Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042412.01.T01 | XP_003626872.1 | 99.306 | 144 | 1 | 0 | 7 | 150 | 3 | 146 | 1.32E-103 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042412.01.T01 | G7LEC4 | 99.306 | 144 | 1 | 0 | 7 | 150 | 3 | 146 | 6.30e-104 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048856.01 | MsG0880042412.01 | 0.805195 | 1.500921e-49 | 7.891234e-47 |
| MsG0180000145.01 | MsG0880042412.01 | 0.810528 | 1.102256e-50 | 6.659932e-48 |
| MsG0180000334.01 | MsG0880042412.01 | 0.802157 | 6.408448e-49 | 3.116830e-46 |
| MsG0180001892.01 | MsG0880042412.01 | 0.818531 | 1.866782e-52 | 1.400995e-49 |
| MsG0180003455.01 | MsG0880042412.01 | 0.807864 | 4.104468e-50 | 2.311540e-47 |
| MsG0180003920.01 | MsG0880042412.01 | 0.800328 | 1.517293e-48 | 7.045572e-46 |
| MsG0180003951.01 | MsG0880042412.01 | 0.807830 | 4.173024e-50 | 2.348117e-47 |
| MsG0180004099.01 | MsG0880042412.01 | 0.803793 | 2.942547e-49 | 1.492252e-46 |
| MsG0180004389.01 | MsG0880042412.01 | 0.813322 | 2.714110e-51 | 1.766880e-48 |
| MsG0280006299.01 | MsG0880042412.01 | 0.808441 | 3.093089e-50 | 1.768760e-47 |
| MsG0780040669.01 | MsG0880042412.01 | 0.801859 | 7.381055e-49 | 3.562800e-46 |
| MsG0780041487.01 | MsG0880042412.01 | 0.812411 | 4.297214e-51 | 2.730428e-48 |
| MsG0880041986.01 | MsG0880042412.01 | 0.807962 | 3.911360e-50 | 2.208545e-47 |
| MsG0880042091.01 | MsG0880042412.01 | 0.873711 | 1.190029e-67 | 5.215242e-64 |
| MsG0880042412.01 | MsG0880042520.01 | 0.807845 | 4.142847e-50 | 2.332011e-47 |
| MsG0880042412.01 | MsG0880044210.01 | 0.817055 | 4.020448e-52 | 2.897465e-49 |
| MsG0880042412.01 | MsG0880044782.01 | 0.801875 | 7.323137e-49 | 3.536382e-46 |
| MsG0280010779.01 | MsG0880042412.01 | 0.810360 | 1.198303e-50 | 7.208321e-48 |
| MsG0280010788.01 | MsG0880042412.01 | 0.806126 | 9.567733e-50 | 5.152076e-47 |
| MsG0280010886.01 | MsG0880042412.01 | 0.807187 | 5.713662e-50 | 3.161714e-47 |
| MsG0280010992.01 | MsG0880042412.01 | 0.804405 | 2.195059e-49 | 1.130766e-46 |
| MsG0280011101.01 | MsG0880042412.01 | 0.813591 | 2.368226e-51 | 1.553029e-48 |
| MsG0280011305.01 | MsG0880042412.01 | 0.821947 | 3.079242e-53 | 2.541403e-50 |
| MsG0280011339.01 | MsG0880042412.01 | 0.825222 | 5.273697e-54 | 4.777635e-51 |
| MsG0380013475.01 | MsG0880042412.01 | 0.826823 | 2.195888e-54 | 2.082128e-51 |
| MsG0380014495.01 | MsG0880042412.01 | 0.804787 | 1.826585e-49 | 9.503533e-47 |
| MsG0380014537.01 | MsG0880042412.01 | 0.809154 | 2.176498e-50 | 1.268268e-47 |
| MsG0680031488.01 | MsG0880042412.01 | 0.800032 | 1.742951e-48 | 8.032464e-46 |
| MsG0680031617.01 | MsG0880042412.01 | 0.803651 | 3.148223e-49 | 1.590716e-46 |
| MsG0680031650.01 | MsG0880042412.01 | 0.803985 | 2.683662e-49 | 1.367767e-46 |
| MsG0680034890.01 | MsG0880042412.01 | 0.804643 | 1.957919e-49 | 1.014843e-46 |
| MsG0480018465.01 | MsG0880042412.01 | 0.801991 | 6.933375e-49 | 3.357760e-46 |
| MsG0480020402.01 | MsG0880042412.01 | 0.804367 | 2.235223e-49 | 1.150386e-46 |
| MsG0480020699.01 | MsG0880042412.01 | 0.809508 | 1.828208e-50 | 1.075371e-47 |
| MsG0480020739.01 | MsG0880042412.01 | 0.804897 | 1.732810e-49 | 9.041842e-47 |
| MsG0480020909.01 | MsG0880042412.01 | 0.843412 | 1.423919e-58 | 2.226176e-55 |
| MsG0480021138.01 | MsG0880042412.01 | 0.805279 | 1.441445e-49 | 7.594629e-47 |
| MsG0480021491.01 | MsG0880042412.01 | 0.810883 | 9.235623e-51 | 5.633980e-48 |
| MsG0480022045.01 | MsG0880042412.01 | 0.801677 | 8.044970e-49 | 3.865101e-46 |
| MsG0480022788.01 | MsG0880042412.01 | 0.816403 | 5.631733e-52 | 3.986641e-49 |
| MsG0480023463.01 | MsG0880042412.01 | 0.840372 | 9.046443e-58 | 1.286005e-54 |
| MsG0480023489.01 | MsG0880042412.01 | 0.818640 | 1.763482e-52 | 1.327349e-49 |
| MsG0580024463.01 | MsG0880042412.01 | 0.820820 | 5.603447e-53 | 4.481093e-50 |
| MsG0380015196.01 | MsG0880042412.01 | 0.843712 | 1.184051e-58 | 1.868514e-55 |
| MsG0380015332.01 | MsG0880042412.01 | 0.818886 | 1.551154e-52 | 1.175610e-49 |
| MsG0380015363.01 | MsG0880042412.01 | 0.818167 | 2.258062e-52 | 1.677598e-49 |
| MsG0380015555.01 | MsG0880042412.01 | 0.810562 | 1.083764e-50 | 6.554342e-48 |
| MsG0380015566.01 | MsG0880042412.01 | 0.800478 | 1.414291e-48 | 6.591904e-46 |
| MsG0380015631.01 | MsG0880042412.01 | 0.816547 | 5.228715e-52 | 3.715878e-49 |
| MsG0380015677.01 | MsG0880042412.01 | 0.825511 | 4.505708e-54 | 4.115178e-51 |
| MsG0380015808.01 | MsG0880042412.01 | 0.805540 | 1.270984e-49 | 6.741545e-47 |
| MsG0380016247.01 | MsG0880042412.01 | 0.808153 | 3.561399e-50 | 2.021222e-47 |
| MsG0380017061.01 | MsG0880042412.01 | 0.821051 | 4.957843e-53 | 3.990729e-50 |
| MsG0380017159.01 | MsG0880042412.01 | 0.803713 | 3.056891e-49 | 1.547009e-46 |
| MsG0380017996.01 | MsG0880042412.01 | 0.824136 | 9.506887e-54 | 8.348438e-51 |
| MsG0480018183.01 | MsG0880042412.01 | 0.805943 | 1.045846e-49 | 5.605463e-47 |
| MsG0580027431.01 | MsG0880042412.01 | 0.813859 | 2.067338e-51 | 1.365539e-48 |
| MsG0280007955.01 | MsG0880042412.01 | 0.812329 | 4.477414e-51 | 2.838638e-48 |
| MsG0280008077.01 | MsG0880042412.01 | 0.809497 | 1.837339e-50 | 1.080458e-47 |
| MsG0280009794.01 | MsG0880042412.01 | 0.841755 | 3.920239e-58 | 5.817074e-55 |
| MsG0780036477.01 | MsG0880042412.01 | 0.801788 | 7.631246e-49 | 3.676823e-46 |
| MsG0780036752.01 | MsG0880042412.01 | 0.816867 | 4.432464e-52 | 3.177911e-49 |
| MsG0780036757.01 | MsG0880042412.01 | 0.807428 | 5.080383e-50 | 2.828953e-47 |
| MsG0780036815.01 | MsG0880042412.01 | 0.815667 | 8.221037e-52 | 5.703755e-49 |
| MsG0780037054.01 | MsG0880042412.01 | 0.827665 | 1.380094e-54 | 1.341117e-51 |
| MsG0780037407.01 | MsG0880042412.01 | 0.806138 | 9.514109e-50 | 5.124700e-47 |
| MsG0780038424.01 | MsG0880042412.01 | 0.811436 | 7.007838e-51 | 4.337814e-48 |
| MsG0780039170.01 | MsG0880042412.01 | 0.804949 | 1.689898e-49 | 8.829287e-47 |
| MsG0780039257.01 | MsG0880042412.01 | 0.802007 | 6.880092e-49 | 3.333395e-46 |
| MsG0780040057.01 | MsG0880042412.01 | 0.802657 | 5.055069e-49 | 2.490046e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042412.01.T01 | MTR_8g011470 | 99.306 | 144 | 1 | 0 | 7 | 150 | 3 | 146 | 1.60e-107 | 302 |
| MsG0880042412.01.T01 | MTR_8g011470 | 99.225 | 129 | 1 | 0 | 7 | 135 | 3 | 131 | 1.69e-94 | 269 |
| MsG0880042412.01.T01 | MTR_7g052620 | 55.629 | 151 | 61 | 4 | 6 | 150 | 1 | 151 | 1.71e-56 | 174 |
| MsG0880042412.01.T01 | MTR_7g116610 | 34.783 | 161 | 81 | 6 | 12 | 150 | 3 | 161 | 2.99e-19 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880042412.01.T01 | AT5G48500 | 54.286 | 140 | 48 | 8 | 12 | 137 | 12 | 149 | 7.60e-40 | 132 |
Find 35 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGAAAATATAATATTTA+AGG | 0.085777 | 8:+8378448 | MsG0880042412.01.T01:three_prime_UTR |
| CTATAATATGATAATCTTCT+TGG | 0.285873 | 8:-8378472 | None:intergenic |
| AGCTATGTTACCAGAAATTA+AGG | 0.293215 | 8:+8378630 | MsG0880042412.01.T01:three_prime_UTR |
| TGATTGTTGTTCCACGTAGA+AGG | 0.326423 | 8:+8376660 | MsG0880042412.01.T01:CDS |
| AGGAACCATGTACCAGCATT+TGG | 0.399058 | 8:+8376482 | MsG0880042412.01.T01:CDS |
| TTGTACAAGTCTTCATCAAC+AGG | 0.401129 | 8:-8378036 | None:intergenic |
| GATCAAGATCTTTATGTTGC+TGG | 0.401416 | 8:+8376602 | MsG0880042412.01.T01:CDS |
| TGATTATTGTGCTAAGCTCT+TGG | 0.402533 | 8:+8378500 | MsG0880042412.01.T01:three_prime_UTR |
| CTTTGAGGTGTATCATTGAT+TGG | 0.403387 | 8:+8378586 | MsG0880042412.01.T01:three_prime_UTR |
| TTAGTCTTTGATGTACTTTG+AGG | 0.416023 | 8:+8378571 | MsG0880042412.01.T01:three_prime_UTR |
| CAGCATTTGGAAGCTGGGAT+TGG | 0.423755 | 8:+8376495 | MsG0880042412.01.T01:CDS |
| GATTCAAAGCATTGAGTGAA+TGG | 0.443836 | 8:-8376530 | None:intergenic |
| TCATCAACAGGCTTTGGTGT+TGG | 0.446438 | 8:-8378024 | None:intergenic |
| ATGTACCAGCATTTGGAAGC+TGG | 0.447529 | 8:+8376489 | MsG0880042412.01.T01:CDS |
| CGTGGAACAACAATCATTGC+AGG | 0.459147 | 8:-8376653 | None:intergenic |
| CTTGACATCGGAGTAGGACT+TGG | 0.462136 | 8:-8378000 | None:intergenic |
| AAGTCTTCATCAACAGGCTT+TGG | 0.463769 | 8:-8378030 | None:intergenic |
| GTACATGGTTCCTCTTGAAA+TGG | 0.466033 | 8:-8376472 | None:intergenic |
| GGTACGTTCCCAACATGAAA+AGG | 0.486529 | 8:+8377933 | MsG0880042412.01.T01:CDS |
| ATAGTAGATAGATACTCTCT+TGG | 0.491827 | 8:+8378415 | MsG0880042412.01.T01:three_prime_UTR |
| CAATCCCAGCTTCCAAATGC+TGG | 0.499013 | 8:-8376494 | None:intergenic |
| TGTACCAGCATTTGGAAGCT+GGG | 0.509582 | 8:+8376490 | MsG0880042412.01.T01:CDS |
| AGCTTCCAAATGCTGGTACA+TGG | 0.514670 | 8:-8376487 | None:intergenic |
| GACATCGGAGTAGGACTTGG+TGG | 0.521886 | 8:-8377997 | None:intergenic |
| GATTGTTGTTCCACGTAGAA+GGG | 0.539249 | 8:+8376661 | MsG0880042412.01.T01:CDS |
| TTGGTGGTTCTTTCACAACA+TGG | 0.545398 | 8:-8377981 | None:intergenic |
| TTTGGTGTTGGTCTTGACAT+CGG | 0.551558 | 8:-8378012 | None:intergenic |
| ATCTTCTTTATGTCAAAACT+AGG | 0.563542 | 8:+8378070 | MsG0880042412.01.T01:CDS |
| GTTGGTCTTGACATCGGAGT+AGG | 0.572189 | 8:-8378006 | None:intergenic |
| TCTTTATGTCAAAACTAGGA+AGG | 0.584419 | 8:+8378074 | MsG0880042412.01.T01:CDS |
| TGCTTTGAATCTGCAAGACA+AGG | 0.600221 | 8:+8376542 | MsG0880042412.01.T01:CDS |
| AATAGGAATACCATTTCAAG+AGG | 0.628897 | 8:+8376462 | MsG0880042412.01.T01:intron |
| ATGAGTCAAGAAAATTTGAG+AGG | 0.637897 | 8:+8378351 | MsG0880042412.01.T01:three_prime_UTR |
| TTTGAATCTGCAAGACAAGG+TGG | 0.656042 | 8:+8376545 | MsG0880042412.01.T01:CDS |
| AGGTGACATACCCTTCTACG+TGG | 0.761356 | 8:-8376671 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATTAATTTCTCTA+TGG | + | Chr8:8377182-8377201 | MsG0880042412.01.T01:intron | 10.0% |
| !! | AAATAAAAATGATTAAATGA+AGG | + | Chr8:8378384-8378403 | MsG0880042412.01.T01:three_prime_UTR | 10.0% |
| !! | TGTATATTAGTAAAAAAATA+TGG | - | Chr8:8377441-8377460 | None:intergenic | 10.0% |
| !!! | AAATGAAAATTTAATTTTAG+TGG | - | Chr8:8378137-8378156 | None:intergenic | 10.0% |
| !!! | ATCATTTTTATTTACAATAT+TGG | - | Chr8:8378377-8378396 | None:intergenic | 10.0% |
| !!! | ATTGTATTTTTTTTTTTTTG+AGG | + | Chr8:8377311-8377330 | MsG0880042412.01.T01:intron | 10.0% |
| !!! | TAATTATTTTTCATTAACAA+AGG | - | Chr8:8377173-8377192 | None:intergenic | 10.0% |
| !!! | TTGTATTTTTTTTTTTTTGA+GGG | + | Chr8:8377312-8377331 | MsG0880042412.01.T01:intron | 10.0% |
| !! | AAAAAAAGTGATATTAGAAA+AGG | - | Chr8:8378270-8378289 | None:intergenic | 15.0% |
| !! | TGGATTTAAATCATTAATTA+GGG | + | Chr8:8377011-8377030 | MsG0880042412.01.T01:intron | 15.0% |
| !! | TTGGATTTAAATCATTAATT+AGG | + | Chr8:8377010-8377029 | MsG0880042412.01.T01:intron | 15.0% |
| !!! | AATTTTAATAGTGATAAAGT+AGG | + | Chr8:8377641-8377660 | MsG0880042412.01.T01:intron | 15.0% |
| !!! | ATGAAAACTAAATGTTTTAT+GGG | + | Chr8:8376413-8376432 | MsG0880042412.01.T01:intron | 15.0% |
| !!! | CATCATTTTATTTTATCTAT+AGG | - | Chr8:8376903-8376922 | None:intergenic | 15.0% |
| !!! | TATGAAAACTAAATGTTTTA+TGG | + | Chr8:8376412-8376431 | MsG0880042412.01.T01:intron | 15.0% |
| !! | AAATATGGTCAAAGTTAAAT+AGG | - | Chr8:8377426-8377445 | None:intergenic | 20.0% |
| !! | ATAATTAATTTCTCTATGGT+AGG | + | Chr8:8377186-8377205 | MsG0880042412.01.T01:intron | 20.0% |
| !! | ATAATTGAATATGCACTAAT+AGG | - | Chr8:8378193-8378212 | None:intergenic | 20.0% |
| !! | ATCATTAATGTCAATACATT+AGG | - | Chr8:8377236-8377255 | None:intergenic | 20.0% |
| !! | CTATAATATGATAATCTTCT+TGG | - | Chr8:8378475-8378494 | None:intergenic | 20.0% |
| !! | TTAATAATGCATCTAACTTT+AGG | + | Chr8:8377681-8377700 | MsG0880042412.01.T01:intron | 20.0% |
| !! | TTTATAAAAAGTGACATTTG+TGG | - | Chr8:8377871-8377890 | None:intergenic | 20.0% |
| !!! | ATATATTGATTGTCAAAGTT+AGG | + | Chr8:8376768-8376787 | MsG0880042412.01.T01:intron | 20.0% |
| !!! | GTTTTAATTTTATCCTCAAT+AGG | + | Chr8:8377047-8377066 | MsG0880042412.01.T01:intron | 20.0% |
| !!! | TAATTTGTTGTTAACATTGT+AGG | + | Chr8:8377906-8377925 | MsG0880042412.01.T01:intron | 20.0% |
| !!! | TATATTGATTGTCAAAGTTA+GGG | + | Chr8:8376769-8376788 | MsG0880042412.01.T01:intron | 20.0% |
| !!! | TGAAAACTAAATGTTTTATG+GGG | + | Chr8:8376414-8376433 | MsG0880042412.01.T01:intron | 20.0% |
| !!! | TTTCTTCTTTTTCTCTTAAA+CGG | + | Chr8:8378530-8378549 | MsG0880042412.01.T01:three_prime_UTR | 20.0% |
| ! | ATCTTCTTTATGTCAAAACT+AGG | + | Chr8:8378070-8378089 | MsG0880042412.01.T01:CDS | 25.0% |
| ! | ATTAATGTCAATACATTAGG+AGG | - | Chr8:8377233-8377252 | None:intergenic | 25.0% |
| ! | CCAGAAATTAAGGAAAAAAA+AGG | + | Chr8:8378640-8378659 | MsG0880042412.01.T01:three_prime_UTR | 25.0% |
| ! | TAAATTGTATTGCATCAAAG+TGG | + | Chr8:8377102-8377121 | MsG0880042412.01.T01:intron | 25.0% |
| ! | TCACCAAAAATATAGACAAT+GGG | + | Chr8:8377726-8377745 | MsG0880042412.01.T01:intron | 25.0% |
| ! | TGCATTATTAAACAAAGTCA+TGG | - | Chr8:8377672-8377691 | None:intergenic | 25.0% |
| ! | TTATGAAAGCAAAGTAGTAA+AGG | - | Chr8:8378161-8378180 | None:intergenic | 25.0% |
| !! | AAAACTAAATGTTTTATGGG+GGG | + | Chr8:8376416-8376435 | MsG0880042412.01.T01:intron | 25.0% |
| !! | ATCTTGTTATGATATACACA+TGG | - | Chr8:8377754-8377773 | None:intergenic | 25.0% |
| !! | GAAAACTAAATGTTTTATGG+GGG | + | Chr8:8376415-8376434 | MsG0880042412.01.T01:intron | 25.0% |
| !! | TCTTTCTTTTTCTACTCTTA+CGG | - | Chr8:8377143-8377162 | None:intergenic | 25.0% |
| !!! | CCTTTTTTTTCCTTAATTTC+TGG | - | Chr8:8378643-8378662 | None:intergenic | 25.0% |
| !!! | CGTTTCTTATTTTCTAAAAG+AGG | + | Chr8:8376726-8376745 | MsG0880042412.01.T01:intron | 25.0% |
| !!! | TTGTTTTGCATGTCTTTAAT+TGG | + | Chr8:8376986-8377005 | MsG0880042412.01.T01:intron | 25.0% |
| AATAGGAATACCATTTCAAG+AGG | + | Chr8:8376462-8376481 | MsG0880042412.01.T01:intron | 30.0% | |
| AGCTATGTTACCAGAAATTA+AGG | + | Chr8:8378630-8378649 | MsG0880042412.01.T01:three_prime_UTR | 30.0% | |
| AGGATGTGAAAAAGCAAAAT+TGG | + | Chr8:8377953-8377972 | MsG0880042412.01.T01:CDS | 30.0% | |
| AGGTCACACAACTTTATAAT+TGG | + | Chr8:8377206-8377225 | MsG0880042412.01.T01:intron | 30.0% | |
| ATAGTAGATAGATACTCTCT+TGG | + | Chr8:8378415-8378434 | MsG0880042412.01.T01:three_prime_UTR | 30.0% | |
| ATGAGTCAAGAAAATTTGAG+AGG | + | Chr8:8378351-8378370 | MsG0880042412.01.T01:three_prime_UTR | 30.0% | |
| GGATGTGAAAAAGCAAAATT+GGG | + | Chr8:8377954-8377973 | MsG0880042412.01.T01:CDS | 30.0% | |
| GGTCACACAACTTTATAATT+GGG | + | Chr8:8377207-8377226 | MsG0880042412.01.T01:intron | 30.0% | |
| GTCACCAAAAATATAGACAA+TGG | + | Chr8:8377725-8377744 | MsG0880042412.01.T01:intron | 30.0% | |
| GTTGTTAACATTGTAGGAAA+AGG | + | Chr8:8377912-8377931 | MsG0880042412.01.T01:intron | 30.0% | |
| TATTGCATCAAAGTGGTTAT+AGG | + | Chr8:8377109-8377128 | MsG0880042412.01.T01:intron | 30.0% | |
| TCTTTATGTCAAAACTAGGA+AGG | + | Chr8:8378074-8378093 | MsG0880042412.01.T01:CDS | 30.0% | |
| TTGCATGTCTTTAATTGGAT+TGG | + | Chr8:8376991-8377010 | MsG0880042412.01.T01:intron | 30.0% | |
| TTTAAATAGGTCATCTATCG+CGG | - | Chr8:8377388-8377407 | None:intergenic | 30.0% | |
| ! | GATCCCATTGTCTATATTTT+TGG | - | Chr8:8377732-8377751 | None:intergenic | 30.0% |
| ! | GCTTTATTGTCTCTGTTAAT+GGG | + | Chr8:8377703-8377722 | MsG0880042412.01.T01:intron | 30.0% |
| ! | TTAGTCTTTGATGTACTTTG+AGG | + | Chr8:8378571-8378590 | MsG0880042412.01.T01:three_prime_UTR | 30.0% |
| ! | TTTCACATCCTTTTCATGTT+GGG | - | Chr8:8377944-8377963 | None:intergenic | 30.0% |
| ! | TTTTCACATCCTTTTCATGT+TGG | - | Chr8:8377945-8377964 | None:intergenic | 30.0% |
| !! | GTTTTGACATAAAGAAGATC+TGG | - | Chr8:8378069-8378088 | None:intergenic | 30.0% |
| !! | TTTTTATTTGGGGGTGTAAT+AGG | + | Chr8:8376445-8376464 | MsG0880042412.01.T01:intron | 30.0% |
| ACGAAAACAGAGAAAAGACA+AGG | - | Chr8:8376709-8376728 | None:intergenic | 35.0% | |
| AGACAAGGATAAGAGAGTTA+AGG | - | Chr8:8376694-8376713 | None:intergenic | 35.0% | |
| AGTGGAGAAAAAGCAAAAGA+GGG | - | Chr8:8378119-8378138 | None:intergenic | 35.0% | |
| GATCAAGATCTTTATGTTGC+TGG | + | Chr8:8376602-8376621 | MsG0880042412.01.T01:CDS | 35.0% | |
| TAGTGGAGAAAAAGCAAAAG+AGG | - | Chr8:8378120-8378139 | None:intergenic | 35.0% | |
| TCAGCTGTGTCAAGTATTAA+GGG | + | Chr8:8377599-8377618 | MsG0880042412.01.T01:intron | 35.0% | |
| TGATTATTGTGCTAAGCTCT+TGG | + | Chr8:8378500-8378519 | MsG0880042412.01.T01:three_prime_UTR | 35.0% | |
| TTAAATAGGTCATCTATCGC+GGG | - | Chr8:8377387-8377406 | None:intergenic | 35.0% | |
| TTGTACAAGTCTTCATCAAC+AGG | - | Chr8:8378039-8378058 | None:intergenic | 35.0% | |
| ! | ATGCATTGACATGCGTAATA+AGG | + | Chr8:8377576-8377595 | MsG0880042412.01.T01:intron | 35.0% |
| !! | CTTTGAGGTGTATCATTGAT+TGG | + | Chr8:8378586-8378605 | MsG0880042412.01.T01:three_prime_UTR | 35.0% |
| !! | GATTCAAAGCATTGAGTGAA+TGG | - | Chr8:8376533-8376552 | None:intergenic | 35.0% |
| !! | GGCTTTATTGTCTCTGTTAA+TGG | + | Chr8:8377702-8377721 | MsG0880042412.01.T01:intron | 35.0% |
| AAGTCTTCATCAACAGGCTT+TGG | - | Chr8:8378033-8378052 | None:intergenic | 40.0% | |
| ATGTACAGCAACATAACTCG+CGG | + | Chr8:8376920-8376939 | MsG0880042412.01.T01:intron | 40.0% | |
| CTGTGTCAAGTATTAAGGGA+CGG | + | Chr8:8377603-8377622 | MsG0880042412.01.T01:intron | 40.0% | |
| GGGAATCTATCACTCTATGT+TGG | + | Chr8:8376789-8376808 | MsG0880042412.01.T01:intron | 40.0% | |
| GTACATGGTTCCTCTTGAAA+TGG | - | Chr8:8376475-8376494 | None:intergenic | 40.0% | |
| GTCAGCTGTGTCAAGTATTA+AGG | + | Chr8:8377598-8377617 | MsG0880042412.01.T01:intron | 40.0% | |
| TTTGAATCTGCAAGACAAGG+TGG | + | Chr8:8376545-8376564 | MsG0880042412.01.T01:CDS | 40.0% | |
| TTTGCACACTCTTCCTATTG+AGG | - | Chr8:8377063-8377082 | None:intergenic | 40.0% | |
| ! | AAAAAGCAAAAGAGGGTGTG+TGG | - | Chr8:8378112-8378131 | None:intergenic | 40.0% |
| ! | AAAAGCAAAAGAGGGTGTGT+GGG | - | Chr8:8378111-8378130 | None:intergenic | 40.0% |
| ! | GATTGTTGTTCCACGTAGAA+GGG | + | Chr8:8376661-8376680 | MsG0880042412.01.T01:CDS | 40.0% |
| ! | TAAATGTTTTATGGGGGGTG+TGG | + | Chr8:8376421-8376440 | MsG0880042412.01.T01:intron | 40.0% |
| ! | TGATTGTTGTTCCACGTAGA+AGG | + | Chr8:8376660-8376679 | MsG0880042412.01.T01:CDS | 40.0% |
| ! | TGCTTTGAATCTGCAAGACA+AGG | + | Chr8:8376542-8376561 | MsG0880042412.01.T01:CDS | 40.0% |
| ! | TTGGTGGTTCTTTCACAACA+TGG | - | Chr8:8377984-8378003 | None:intergenic | 40.0% |
| ! | TTTTGCCAATGCAGAAGAGA+GGG | + | Chr8:8378287-8378306 | MsG0880042412.01.T01:intron | 40.0% |
| ! | TTTTTGCCAATGCAGAAGAG+AGG | + | Chr8:8378286-8378305 | MsG0880042412.01.T01:intron | 40.0% |
| !! | TTTGGTGTTGGTCTTGACAT+CGG | - | Chr8:8378015-8378034 | None:intergenic | 40.0% |
| !!! | GGGGGTGTGGTTTTTTATTT+GGG | + | Chr8:8376434-8376453 | MsG0880042412.01.T01:intron | 40.0% |
| !!! | GGGGTGTGGTTTTTTATTTG+GGG | + | Chr8:8376435-8376454 | MsG0880042412.01.T01:intron | 40.0% |
| !!! | GGGTGTGGTTTTTTATTTGG+GGG | + | Chr8:8376436-8376455 | MsG0880042412.01.T01:intron | 40.0% |
| AACTCGCGGTAAGTAACACA+TGG | + | Chr8:8376934-8376953 | MsG0880042412.01.T01:intron | 45.0% | |
| ACTCGCGGTAAGTAACACAT+GGG | + | Chr8:8376935-8376954 | MsG0880042412.01.T01:intron | 45.0% | |
| AGCTTCCAAATGCTGGTACA+TGG | - | Chr8:8376490-8376509 | None:intergenic | 45.0% | |
| AGGAACCATGTACCAGCATT+TGG | + | Chr8:8376482-8376501 | MsG0880042412.01.T01:CDS | 45.0% | |
| ATGTACCAGCATTTGGAAGC+TGG | + | Chr8:8376489-8376508 | MsG0880042412.01.T01:CDS | 45.0% | |
| CGTGGAACAACAATCATTGC+AGG | - | Chr8:8376656-8376675 | None:intergenic | 45.0% | |
| GGTACGTTCCCAACATGAAA+AGG | + | Chr8:8377933-8377952 | MsG0880042412.01.T01:CDS | 45.0% | |
| GTCAAGTATTAAGGGACGGA+GGG | + | Chr8:8377607-8377626 | MsG0880042412.01.T01:intron | 45.0% | |
| TGTACCAGCATTTGGAAGCT+GGG | + | Chr8:8376490-8376509 | MsG0880042412.01.T01:CDS | 45.0% | |
| TGTCAAGTATTAAGGGACGG+AGG | + | Chr8:8377606-8377625 | MsG0880042412.01.T01:intron | 45.0% | |
| ! | AAAGCAAAAGAGGGTGTGTG+GGG | - | Chr8:8378110-8378129 | None:intergenic | 45.0% |
| ! | TCATCAACAGGCTTTGGTGT+TGG | - | Chr8:8378027-8378046 | None:intergenic | 45.0% |
| !!! | GGGGGGTGTGGTTTTTTATT+TGG | + | Chr8:8376433-8376452 | MsG0880042412.01.T01:intron | 45.0% |
| !! | ATTTGAAAATATAATATTTA+AGG | + | Chr8:8378448-8378467 | MsG0880042412.01.T01:three_prime_UTR | 5.0% |
| !!! | AAAATTAAACATTTTTAAAT+AGG | - | Chr8:8377401-8377420 | None:intergenic | 5.0% |
| !!! | TATAAAATTAATAAAACTTT+TGG | - | Chr8:8378242-8378261 | None:intergenic | 5.0% |
| AGGTGACATACCCTTCTACG+TGG | - | Chr8:8376674-8376693 | None:intergenic | 50.0% | |
| ATAGGTCATCTATCGCGGGA+CGG | - | Chr8:8377383-8377402 | None:intergenic | 50.0% | |
| CAATCCCAGCTTCCAAATGC+TGG | - | Chr8:8376497-8376516 | None:intergenic | 50.0% | |
| CACAACCCTCTCTTCTGCAT+TGG | - | Chr8:8378295-8378314 | None:intergenic | 50.0% | |
| CAGCATTTGGAAGCTGGGAT+TGG | + | Chr8:8376495-8376514 | MsG0880042412.01.T01:CDS | 50.0% | |
| CTTGACATCGGAGTAGGACT+TGG | - | Chr8:8378003-8378022 | None:intergenic | 50.0% | |
| !! | GTTGGTCTTGACATCGGAGT+AGG | - | Chr8:8378009-8378028 | None:intergenic | 50.0% |
| GACATCGGAGTAGGACTTGG+TGG | - | Chr8:8378000-8378019 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 8376375 | 8378669 | 8376375 | ID=MsG0880042412.01;Name=MsG0880042412.01 |
| Chr8 | mRNA | 8376375 | 8378669 | 8376375 | ID=MsG0880042412.01.T01;Parent=MsG0880042412.01;Name=MsG0880042412.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0.66|0.75|1|0.33|0.25|4|321|150 |
| Chr8 | exon | 8378301 | 8378669 | 8378301 | ID=MsG0880042412.01.T01:exon:1114;Parent=MsG0880042412.01.T01 |
| Chr8 | exon | 8377928 | 8378095 | 8377928 | ID=MsG0880042412.01.T01:exon:1113;Parent=MsG0880042412.01.T01 |
| Chr8 | exon | 8376467 | 8376682 | 8376467 | ID=MsG0880042412.01.T01:exon:1112;Parent=MsG0880042412.01.T01 |
| Chr8 | exon | 8376375 | 8376395 | 8376375 | ID=MsG0880042412.01.T01:exon:1111;Parent=MsG0880042412.01.T01 |
| Chr8 | CDS | 8376375 | 8376395 | 8376375 | ID=MsG0880042412.01.T01:cds;Parent=MsG0880042412.01.T01 |
| Chr8 | CDS | 8376467 | 8376682 | 8376467 | ID=MsG0880042412.01.T01:cds;Parent=MsG0880042412.01.T01 |
| Chr8 | CDS | 8377928 | 8378095 | 8377928 | ID=MsG0880042412.01.T01:cds;Parent=MsG0880042412.01.T01 |
| Chr8 | CDS | 8378301 | 8378348 | 8378301 | ID=MsG0880042412.01.T01:cds;Parent=MsG0880042412.01.T01 |
| Chr8 | three_prime_UTR | 8378349 | 8378669 | 8378349 | ID=MsG0880042412.01.T01:three_prime_utr;Parent=MsG0880042412.01.T01 |
| Gene Sequence |
| Protein sequence |
