AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003350.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003350.01.T01 MTR_1g059960 96.629 267 9 0 1 267 1 267 0.0 538
MsG0180003350.01.T01 MTR_1g059960 96.311 244 9 0 24 267 3 246 4.85e-179 492
MsG0180003350.01.T01 MTR_1g059940 84.962 266 40 0 1 266 1 266 5.60e-172 475
MsG0180003350.01.T01 MTR_1g059900 86.000 200 28 0 67 266 1 200 1.81e-129 365
MsG0180003350.01.T01 MTR_7g102960 41.418 268 140 6 7 264 9 269 7.94e-63 199
MsG0180003350.01.T01 MTR_0219s0070 39.852 271 150 7 2 265 6 270 1.37e-61 196
MsG0180003350.01.T01 MTR_1g062880 41.810 232 126 3 35 263 48 273 4.16e-60 192
MsG0180003350.01.T01 MTR_1g062860 36.122 263 158 4 9 266 19 276 3.57e-59 189
MsG0180003350.01.T01 MTR_7g090950 38.433 268 145 5 10 267 8 265 7.83e-56 181
MsG0180003350.01.T01 MTR_0219s0130 50.820 61 30 0 202 262 3 63 1.21e-17 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003350.01.T01 AT3G52720 44.275 262 143 2 6 267 11 269 1.12e-83 252
MsG0180003350.01.T01 AT3G52720 44.275 262 143 2 6 267 11 269 1.12e-83 252
MsG0180003350.01.T01 AT3G52720 44.275 262 143 2 6 267 11 269 1.12e-83 252
MsG0180003350.01.T01 AT3G52720 42.534 221 124 2 6 226 11 228 1.16e-63 199
MsG0180003350.01.T01 AT2G28210 38.806 268 149 6 5 263 10 271 1.91e-61 195
MsG0180003350.01.T01 AT1G08080 39.662 237 137 2 27 263 41 271 5.60e-60 191
MsG0180003350.01.T01 AT1G08065 35.849 265 156 4 7 263 10 268 1.14e-53 175
MsG0180003350.01.T01 AT4G20990 37.391 230 134 4 35 264 45 264 1.37e-53 175
MsG0180003350.01.T01 AT5G04180 38.911 257 142 7 9 258 5 253 7.52e-53 173
MsG0180003350.01.T01 AT4G21000 37.824 193 110 4 34 226 45 227 4.43e-42 145
MsG0180003350.01.T01 AT5G56330 32.787 244 115 5 24 263 136 334 7.87e-35 128
MsG0180003350.01.T01 AT5G56330 39.053 169 94 4 24 184 136 303 4.16e-31 117
MsG0180003350.01.T01 AT2G28210 39.850 133 71 4 5 128 10 142 5.42e-24 95.1

Find 73 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTAAGGGTTTCAATTCT+TGG 0.170815 1:+60988017 None:intergenic
AAACGTGCCAAGGGCAATTT+TGG 0.183202 1:+60986084 None:intergenic
TATTGCAGCCCTCTACAATT+TGG 0.195816 1:-60986400 MsG0180003350.01.T01:CDS
GTTGGAGATATTAACATAAA+TGG 0.232737 1:-60987654 MsG0180003350.01.T01:CDS
AGGAAGGTAGTTTCTGTCTA+AGG 0.249090 1:+60988003 None:intergenic
ATTGAGAGTTCTCTATTCTA+AGG 0.294436 1:-60985518 MsG0180003350.01.T01:three_prime_UTR
CCCCACTTCTCAGGACCATT+TGG 0.327367 1:+60988124 None:intergenic
TTAACAACCAATTCAACATT+GGG 0.341353 1:-60987964 MsG0180003350.01.T01:CDS
ATGTAGAGGAAATAAATAAA+AGG 0.341861 1:-60986060 MsG0180003350.01.T01:CDS
TACATACCCCAATGTTGAAT+TGG 0.343928 1:+60987957 None:intergenic
TTAACAAGTGTAGCATTTGT+AGG 0.346383 1:+60987983 None:intergenic
AATTCTTCTTATTGCAACTT+TGG 0.348144 1:-60988313 MsG0180003350.01.T01:CDS
CAACATATCTATAATATCTA+TGG 0.348697 1:+60986035 None:intergenic
GAATCCCATGTCTCTATTTG+TGG 0.358258 1:+60985657 None:intergenic
TAATCATATCACTCAAATTA+TGG 0.363011 1:-60985425 MsG0180003350.01.T01:three_prime_UTR
ACTCATTAAAACAACTTCAT+TGG 0.366707 1:-60987623 MsG0180003350.01.T01:CDS
TAGATAATAGCTATTCAAAA+TGG 0.372426 1:-60988355 MsG0180003350.01.T01:exon
ATTGCAGCCCTCTACAATTT+GGG 0.374926 1:-60986399 MsG0180003350.01.T01:CDS
CATGCAAAGAAGGTGTCATT+TGG 0.384098 1:-60985994 MsG0180003350.01.T01:CDS
TCGTTTGCAGCATGCTCAAA+TGG 0.388881 1:-60988088 MsG0180003350.01.T01:CDS
AACTCTACCTTGGAGATTAG+AGG 0.392300 1:+60986366 None:intergenic
TGTTATTGTTATCTTCTGTA+AGG 0.397207 1:+60986430 None:intergenic
CTCAGGGTTCCCCACTTCTC+AGG 0.400725 1:+60988115 None:intergenic
TTTAGTTATATTGGACCAAA+TGG 0.408021 1:-60988139 MsG0180003350.01.T01:CDS
GGCATGCACCTGCAGAGCAC+AGG 0.420992 1:-60987602 MsG0180003350.01.T01:CDS
CCATGAGCCCTGTGCTCTGC+AGG 0.431436 1:+60987594 None:intergenic
ACCTTGGAGATTAGAGGATC+AGG 0.444518 1:+60986372 None:intergenic
GGTGTCATTTGGAACATCAT+TGG 0.445336 1:-60985983 MsG0180003350.01.T01:CDS
GTTAACAACCAATTCAACAT+TGG 0.453599 1:-60987965 MsG0180003350.01.T01:CDS
GTTGCCCACACGATTCTCAT+TGG 0.455045 1:+60986114 None:intergenic
TTTATGATAAAGCTAGGTAC+TGG 0.458535 1:-60985600 MsG0180003350.01.T01:three_prime_UTR
GAAGTGGCCTTGCATTGTGC+TGG 0.462504 1:+60985717 None:intergenic
TATCTTCTGTAAGGTGAACT+AGG 0.473509 1:+60986439 None:intergenic
CCTTGGCACGTTTGATGTAG+AGG 0.490692 1:-60986074 MsG0180003350.01.T01:CDS
CAAATGACACCTTCTTTGCA+TGG 0.493029 1:+60985995 None:intergenic
CATAGATATTATAGATATGT+TGG 0.494664 1:-60986034 MsG0180003350.01.T01:CDS
GGAAGGTAGTTTCTGTCTAA+GGG 0.496400 1:+60988004 None:intergenic
CGTTTGCAGCATGCTCAAAT+GGG 0.497742 1:-60988087 MsG0180003350.01.T01:CDS
ATGCTGCAAACGATGGACTC+AGG 0.504036 1:+60988098 None:intergenic
CCTGCAGAGCACAGGGCTCA+TGG 0.505272 1:-60987594 MsG0180003350.01.T01:CDS
CGACCATTCAATGGCTGAAG+TGG 0.505749 1:+60985701 None:intergenic
TATTCTAAGGATGTTCTACT+AGG 0.517315 1:-60985505 MsG0180003350.01.T01:three_prime_UTR
TCATTCATTACAAGTTCCAC+TGG 0.530814 1:+60988052 None:intergenic
AGGCCACTTCAGCCATTGAA+TGG 0.533333 1:-60985704 MsG0180003350.01.T01:CDS
ACTACCCCTCCATGCAAAGA+AGG 0.533789 1:-60986004 MsG0180003350.01.T01:CDS
CCTCTACATCAAACGTGCCA+AGG 0.536082 1:+60986074 None:intergenic
ACCAAATGGTCCTGAGAAGT+GGG 0.541655 1:-60988125 MsG0180003350.01.T01:CDS
GACCAAATGGTCCTGAGAAG+TGG 0.543240 1:-60988126 MsG0180003350.01.T01:CDS
CAAGTGTAGCATTTGTAGGA+AGG 0.546338 1:+60987987 None:intergenic
GCATGCACCTGCAGAGCACA+GGG 0.546819 1:-60987601 MsG0180003350.01.T01:CDS
TGACACCTTCTTTGCATGGA+GGG 0.546979 1:+60985999 None:intergenic
AAAGATGCCAAAATTGCCCT+TGG 0.564204 1:-60986091 MsG0180003350.01.T01:CDS
TTTAGAGGGATACTAACATC+AGG 0.569976 1:+60985568 None:intergenic
TGCTGCAAACGATGGACTCA+GGG 0.573943 1:+60988099 None:intergenic
TTTGAGCATGCTGCAAACGA+TGG 0.579578 1:+60988091 None:intergenic
GACACCTTCTTTGCATGGAG+GGG 0.587126 1:+60986000 None:intergenic
CTCTACATCAAACGTGCCAA+GGG 0.596044 1:+60986075 None:intergenic
TAGAGTTCCAGCACAATGCA+AGG 0.599993 1:-60985724 MsG0180003350.01.T01:CDS
TCCTGATCCTCTAATCTCCA+AGG 0.601948 1:-60986373 MsG0180003350.01.T01:intron
AACTACCACAAATAGAGACA+TGG 0.605284 1:-60985662 MsG0180003350.01.T01:exon
CAGGATCACCCAAATTGTAG+AGG 0.616295 1:+60986391 None:intergenic
CATTTGGAACATCATTGGCA+AGG 0.625922 1:-60985978 MsG0180003350.01.T01:intron
AGGATCACCCAAATTGTAGA+GGG 0.637120 1:+60986392 None:intergenic
ACTACCACAAATAGAGACAT+GGG 0.637186 1:-60985661 MsG0180003350.01.T01:exon
TAACAACCAATTCAACATTG+GGG 0.644450 1:-60987963 MsG0180003350.01.T01:intron
ATGACACCTTCTTTGCATGG+AGG 0.651112 1:+60985998 None:intergenic
GCTAGCCAATGAGAATCGTG+TGG 0.657074 1:-60986119 MsG0180003350.01.T01:CDS
TGGGAAAGCACAAAGTCCAG+TGG 0.663928 1:-60988068 MsG0180003350.01.T01:CDS
CTAGCCAATGAGAATCGTGT+GGG 0.675900 1:-60986118 MsG0180003350.01.T01:CDS
ATATTCCAAATACAGTCATG+AGG 0.687190 1:-60986472 MsG0180003350.01.T01:intron
CCAAATGGTCCTGAGAAGTG+GGG 0.710021 1:-60988124 MsG0180003350.01.T01:CDS
CTTCTGTAAGGTGAACTAGG+TGG 0.710976 1:+60986442 None:intergenic
TGCTGGAACTCTACACCCAG+TGG 0.713140 1:+60985734 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAAAAAAAATTAAACT+AGG - Chr1:60986391-60986410 MsG0180003350.01.T01:CDS 10.0%
!! TAAATGTAGAATTTATTATT+TGG - Chr1:60987486-60987505 MsG0180003350.01.T01:intron 10.0%
!! TAATTCAACAAAATATTTAA+AGG - Chr1:60986980-60986999 MsG0180003350.01.T01:intron 10.0%
!! TTCAAATTATTATTATTAGT+CGG - Chr1:60985886-60985905 MsG0180003350.01.T01:intron 10.0%
!!! ATTTTATTATATATCATATG+AGG + Chr1:60988322-60988341 None:intergenic 10.0%
!!! TAATAGTATACTATTTTTTT+TGG + Chr1:60988365-60988384 None:intergenic 10.0%
!! AAATATTTATAAGCATCATT+TGG + Chr1:60986916-60986935 None:intergenic 15.0%
!! AAATCAACTAATTTGAATTA+AGG + Chr1:60986236-60986255 None:intergenic 15.0%
!! TAAAAACTACATTTAATTCA+TGG + Chr1:60988061-60988080 None:intergenic 15.0%
!! TAATTTGAATTAAGGATTAA+AGG + Chr1:60986228-60986247 None:intergenic 15.0%
!!! AATATAAAGTAATTTGTGTT+TGG - Chr1:60987821-60987840 MsG0180003350.01.T01:intron 15.0%
!!! AATTTTTTTTTCTTTTCCAT+GGG + Chr1:60986386-60986405 None:intergenic 15.0%
!!! ATATAAAGTAATTTGTGTTT+GGG - Chr1:60987822-60987841 MsG0180003350.01.T01:intron 15.0%
!!! ATCTATATTTTTTTTTTTCG+TGG - Chr1:60986581-60986600 MsG0180003350.01.T01:intron 15.0%
!!! ATTTTTTATAAACAGAAAGA+GGG - Chr1:60986772-60986791 MsG0180003350.01.T01:intron 15.0%
!!! TAATTTTTTTTTCTTTTCCA+TGG + Chr1:60986387-60986406 None:intergenic 15.0%
!!! TCAATTTTATAAAACCAATT+CGG + Chr1:60987782-60987801 None:intergenic 15.0%
!!! TTTGTATTAATTTTTGCTTT+TGG - Chr1:60987856-60987875 MsG0180003350.01.T01:intron 15.0%
!! ACTAATAAAAATGGTTTGAA+AGG + Chr1:60987042-60987061 None:intergenic 20.0%
!! ATGTAGAGGAAATAAATAAA+AGG - Chr1:60987627-60987646 MsG0180003350.01.T01:CDS 20.0%
!! ATTTGAAAAGTAGAAATGAT+TGG + Chr1:60985873-60985892 None:intergenic 20.0%
!! CAACAAAATATTTAAAGGAT+AGG - Chr1:60986985-60987004 MsG0180003350.01.T01:intron 20.0%
!! CAACATATCTATAATATCTA+TGG + Chr1:60987655-60987674 None:intergenic 20.0%
!! CATAGATATTATAGATATGT+TGG - Chr1:60987653-60987672 MsG0180003350.01.T01:CDS 20.0%
!! CTAAACTGAAAAAATAATGT+AGG - Chr1:60988137-60988156 MsG0180003350.01.T01:CDS 20.0%
!! TAATCATATCACTCAAATTA+TGG - Chr1:60988262-60988281 MsG0180003350.01.T01:intron 20.0%
!! TAGATAATAGCTATTCAAAA+TGG - Chr1:60985332-60985351 MsG0180003350.01.T01:three_prime_UTR 20.0%
!! TCTAAATGGTATAACAATTA+TGG + Chr1:60986530-60986549 None:intergenic 20.0%
!! TGCTATAACTATAACAATTA+TGG + Chr1:60986556-60986575 None:intergenic 20.0%
!!! AAAAAATGAAAAGTACTTCT+TGG - Chr1:60986443-60986462 MsG0180003350.01.T01:CDS 20.0%
!!! AAAATATAGGTACATTTTGA+AGG - Chr1:60986006-60986025 MsG0180003350.01.T01:CDS 20.0%
!!! AACTAACATTGTAATTTGTA+AGG + Chr1:60987178-60987197 None:intergenic 20.0%
!!! ACAAATTTTATGATAAAGCT+AGG - Chr1:60988081-60988100 MsG0180003350.01.T01:CDS 20.0%
!!! ACATTATTTTTTCAGTTTAG+AGG + Chr1:60988137-60988156 None:intergenic 20.0%
!!! ACTAACATTGTAATTTGTAA+GGG + Chr1:60987177-60987196 None:intergenic 20.0%
!!! AGAACAACTAAAACTTTTAA+AGG - Chr1:60987928-60987947 MsG0180003350.01.T01:intron 20.0%
!!! AGTTTTTTTTATGCTAGATT+CGG - Chr1:60985520-60985539 MsG0180003350.01.T01:three_prime_UTR 20.0%
!!! CATTATTTTTTCAGTTTAGA+GGG + Chr1:60988136-60988155 None:intergenic 20.0%
!!! CATTTTTTATAAACAGAAAG+AGG - Chr1:60986771-60986790 MsG0180003350.01.T01:intron 20.0%
!!! TAAAAGTTTTAGTTGTTCTT+TGG + Chr1:60987927-60987946 None:intergenic 20.0%
!!! TCGGTTAATTTTAGTTATAT+TGG - Chr1:60985539-60985558 MsG0180003350.01.T01:three_prime_UTR 20.0%
!!! TGTCAAGAAATTGTTTTATA+TGG - Chr1:60986957-60986976 MsG0180003350.01.T01:intron 20.0%
!!! TTTTAACCAAAGTAATTAGA+GGG + Chr1:60986266-60986285 None:intergenic 20.0%
!!! TTTTTAACCAAAGTAATTAG+AGG + Chr1:60986267-60986286 None:intergenic 20.0%
!!! TTTTTTATAAACAGAAAGAG+GGG - Chr1:60986773-60986792 MsG0180003350.01.T01:intron 20.0%
! AAAACGAAAAAAAAACAGAG+TGG + Chr1:60988232-60988251 None:intergenic 25.0%
! AACAATTATGGTTGTCTAAA+TGG + Chr1:60986544-60986563 None:intergenic 25.0%
! AACGTTCATATTTGATATCA+CGG - Chr1:60987364-60987383 MsG0180003350.01.T01:intron 25.0%
! AATGGTATAACAATTATGGT+TGG + Chr1:60986526-60986545 None:intergenic 25.0%
! AATTCTTCTTATTGCAACTT+TGG - Chr1:60985374-60985393 MsG0180003350.01.T01:three_prime_UTR 25.0%
! ACAAAGTACACAAATTGTTA+AGG - Chr1:60985947-60985966 MsG0180003350.01.T01:intron 25.0%
! ACACAAATTGTTAAGGAAAA+TGG - Chr1:60985954-60985973 MsG0180003350.01.T01:intron 25.0%
! ACTCATTAAAACAACTTCAT+TGG - Chr1:60986064-60986083 MsG0180003350.01.T01:CDS 25.0%
! AGCTTCATGACTAATAAAAA+TGG + Chr1:60987051-60987070 None:intergenic 25.0%
! AGGTACTAAGTTTAATCAAT+TGG - Chr1:60987729-60987748 MsG0180003350.01.T01:intron 25.0%
! AGTTTAATCAATTGGTTATG+CGG - Chr1:60987737-60987756 MsG0180003350.01.T01:intron 25.0%
! CAAAATATTTAAAGGATAGG+AGG - Chr1:60986988-60987007 MsG0180003350.01.T01:intron 25.0%
! CTTAAAAAGTGGAAAAATTG+TGG - Chr1:60985775-60985794 MsG0180003350.01.T01:CDS 25.0%
! GTTGGAGATATTAACATAAA+TGG - Chr1:60986033-60986052 MsG0180003350.01.T01:CDS 25.0%
! TACACAAATCTCTTAAAAAG+TGG - Chr1:60985764-60985783 MsG0180003350.01.T01:CDS 25.0%
! TGAGTTTCACAATAATCAAT+AGG + Chr1:60986819-60986838 None:intergenic 25.0%
! TGTTATTGTTATCTTCTGTA+AGG + Chr1:60987260-60987279 None:intergenic 25.0%
! TTAACAACCAATTCAACATT+GGG - Chr1:60985723-60985742 MsG0180003350.01.T01:CDS 25.0%
! TTAAGGATTAAAGGAATTAG+AGG + Chr1:60986219-60986238 None:intergenic 25.0%
! TTTAGTTATATTGGACCAAA+TGG - Chr1:60985548-60985567 MsG0180003350.01.T01:three_prime_UTR 25.0%
! TTTATTCCTTGACAAAAATC+TGG + Chr1:60987143-60987162 None:intergenic 25.0%
!! ATCAACTGCATCTATTATTT+TGG + Chr1:60985458-60985477 None:intergenic 25.0%
!! TGCTTATTATGTAGAACTTT+TGG - Chr1:60986699-60986718 MsG0180003350.01.T01:intron 25.0%
!!! ATATTTTTTTTTTTCGTGGC+CGG - Chr1:60986585-60986604 MsG0180003350.01.T01:intron 25.0%
AAGAAAAATATACTGTCCCA+TGG - Chr1:60986367-60986386 MsG0180003350.01.T01:intron 30.0%
AGGGAACAAATATAGAAGAA+AGG + Chr1:60986133-60986152 None:intergenic 30.0%
ATATTCCAAATACAGTCATG+AGG - Chr1:60987215-60987234 MsG0180003350.01.T01:intron 30.0%
ATTGAGAGTTCTCTATTCTA+AGG - Chr1:60988169-60988188 MsG0180003350.01.T01:intron 30.0%
CGGTAGTATATAGTTATGAT+GGG + Chr1:60985805-60985824 None:intergenic 30.0%
GGAACAAATATAGAAGAAAG+GGG + Chr1:60986131-60986150 None:intergenic 30.0%
GGGAACAAATATAGAAGAAA+GGG + Chr1:60986132-60986151 None:intergenic 30.0%
GGTAGTATATAGTTATGATG+GGG + Chr1:60985804-60985823 None:intergenic 30.0%
GGTTGAGTCTGTTAAAATAT+AGG - Chr1:60985993-60986012 MsG0180003350.01.T01:CDS 30.0%
GTATAACAATTATGGTTGGA+GGG + Chr1:60986522-60986541 None:intergenic 30.0%
GTATAGCTACTAATTACATG+TGG - Chr1:60987512-60987531 MsG0180003350.01.T01:intron 30.0%
GTTAACAACCAATTCAACAT+TGG - Chr1:60985722-60985741 MsG0180003350.01.T01:CDS 30.0%
TAACAACCAATTCAACATTG+GGG - Chr1:60985724-60985743 MsG0180003350.01.T01:CDS 30.0%
TCGGTAGTATATAGTTATGA+TGG + Chr1:60985806-60985825 None:intergenic 30.0%
TGACTTAAATAACTCTACCT+TGG + Chr1:60987334-60987353 None:intergenic 30.0%
TTAACAAGTGTAGCATTTGT+AGG + Chr1:60985707-60985726 None:intergenic 30.0%
TTCAAACCCTCTAATTACTT+TGG - Chr1:60986257-60986276 MsG0180003350.01.T01:intron 30.0%
TTTATGATAAAGCTAGGTAC+TGG - Chr1:60988087-60988106 MsG0180003350.01.T01:CDS 30.0%
! ACATATTCGATTTGAAGTGT+CGG + Chr1:60985825-60985844 None:intergenic 30.0%
! ATTATTATTAGTCGGTGTCT+AGG - Chr1:60985894-60985913 MsG0180003350.01.T01:intron 30.0%
! TATTCTAAGGATGTTCTACT+AGG - Chr1:60988182-60988201 MsG0180003350.01.T01:intron 30.0%
! TTAGTTCCAGATTTTTGTCA+AGG - Chr1:60987134-60987153 MsG0180003350.01.T01:intron 30.0%
!! GAAATTGATTTTGACCGAAT+TGG - Chr1:60987765-60987784 MsG0180003350.01.T01:intron 30.0%
!! GTACATTTTGAAGGAAAAGT+TGG - Chr1:60986015-60986034 MsG0180003350.01.T01:CDS 30.0%
!!! TATTTTTTTTTTTCGTGGCC+GGG - Chr1:60986586-60986605 MsG0180003350.01.T01:intron 30.0%
AAAAGGAATGCATTGGGATT+TGG + Chr1:60986171-60986190 None:intergenic 35.0%
AAAGAGGGGAATAAAACGTT+TGG - Chr1:60986787-60986806 MsG0180003350.01.T01:intron 35.0%
AAAGGAATGCATTGGGATTT+GGG + Chr1:60986170-60986189 None:intergenic 35.0%
AACTACCACAAATAGAGACA+TGG - Chr1:60988025-60988044 MsG0180003350.01.T01:CDS 35.0%
AAGTACTTCTTGGAATGACT+TGG - Chr1:60986453-60986472 MsG0180003350.01.T01:CDS 35.0%
ACTACCACAAATAGAGACAT+GGG - Chr1:60988026-60988045 MsG0180003350.01.T01:CDS 35.0%
AGATAGATGTAATTGCTGTC+CGG + Chr1:60986664-60986683 None:intergenic 35.0%
ATTTACCACGAATCCAAACA+AGG - Chr1:60987429-60987448 MsG0180003350.01.T01:intron 35.0%
CAAGAGTCAAGACTATAAAG+TGG - Chr1:60987463-60987482 MsG0180003350.01.T01:intron 35.0%
GACGATGCATAATATATGCA+AGG + Chr1:60986626-60986645 None:intergenic 35.0%
GGTATAACAATTATGGTTGG+AGG + Chr1:60986523-60986542 None:intergenic 35.0%
TAACGGAAAAGGAATGCATT+GGG + Chr1:60986177-60986196 None:intergenic 35.0%
TACATACCCCAATGTTGAAT+TGG + Chr1:60985733-60985752 None:intergenic 35.0%
TATCTTCTGTAAGGTGAACT+AGG + Chr1:60987251-60987270 None:intergenic 35.0%
TCATTCATTACAAGTTCCAC+TGG + Chr1:60985638-60985657 None:intergenic 35.0%
TCGAGTTCAAATGTGGATAA+CGG + Chr1:60986194-60986213 None:intergenic 35.0%
TGAGTCATGTAATCCTTGTT+TGG + Chr1:60987445-60987464 None:intergenic 35.0%
TGCATAATATATGCAAGGTC+CGG + Chr1:60986621-60986640 None:intergenic 35.0%
TGTCTAAGGGTTTCAATTCT+TGG + Chr1:60985673-60985692 None:intergenic 35.0%
TTCTTACTTAATGAGCATGC+AGG - Chr1:60987889-60987908 MsG0180003350.01.T01:intron 35.0%
TTTAGAGGGATACTAACATC+AGG + Chr1:60988122-60988141 None:intergenic 35.0%
! AATGGTGATGTCAACTGATA+TGG - Chr1:60985972-60985991 MsG0180003350.01.T01:intron 35.0%
! ATAACGGAAAAGGAATGCAT+TGG + Chr1:60986178-60986197 None:intergenic 35.0%
! TCAATTTTGCGACCATTCAA+TGG + Chr1:60987998-60988017 None:intergenic 35.0%
! TTCTACTAGGACACTTTTCT+AGG - Chr1:60988195-60988214 MsG0180003350.01.T01:intron 35.0%
!! AGCTTGATAATGACAACTTG+AGG - Chr1:60987067-60987086 MsG0180003350.01.T01:intron 35.0%
!! TCAAATGTGGATAACGGAAA+AGG + Chr1:60986188-60986207 None:intergenic 35.0%
!!! AAAACTTTTAAAGGCACCAC+TGG - Chr1:60987937-60987956 MsG0180003350.01.T01:intron 35.0%
!!! AAACTTTTAAAGGCACCACT+GGG - Chr1:60987938-60987957 MsG0180003350.01.T01:intron 35.0%
!!! AGGACACTTTTCTAGGATTT+TGG - Chr1:60988202-60988221 MsG0180003350.01.T01:intron 35.0%
!!! ATTTTTTTTTTTCGTGGCCG+GGG - Chr1:60986587-60986606 MsG0180003350.01.T01:intron 35.0%
AAAGATGCCAAAATTGCCCT+TGG - Chr1:60987596-60987615 MsG0180003350.01.T01:CDS 40.0%
AACTCTACCTTGGAGATTAG+AGG + Chr1:60987324-60987343 None:intergenic 40.0%
ACTTAATGAGCATGCAGGTT+AGG - Chr1:60987894-60987913 MsG0180003350.01.T01:intron 40.0%
AGGAAGGTAGTTTCTGTCTA+AGG + Chr1:60985687-60985706 None:intergenic 40.0%
AGGATCACCCAAATTGTAGA+GGG + Chr1:60987298-60987317 None:intergenic 40.0%
ATTGCAGCCCTCTACAATTT+GGG - Chr1:60987288-60987307 MsG0180003350.01.T01:intron 40.0%
CAAATGACACCTTCTTTGCA+TGG + Chr1:60987695-60987714 None:intergenic 40.0%
CAAGTGTAGCATTTGTAGGA+AGG + Chr1:60985703-60985722 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+GGG + Chr1:60986619-60986638 None:intergenic 40.0%
CGGTAAATTTGTCGAAGTCA+TGG - Chr1:60987384-60987403 MsG0180003350.01.T01:intron 40.0%
GAATCCCATGTCTCTATTTG+TGG + Chr1:60988033-60988052 None:intergenic 40.0%
GATAGATGTAATTGCTGTCC+GGG + Chr1:60986663-60986682 None:intergenic 40.0%
GCATAATATATGCAAGGTCC+GGG + Chr1:60986620-60986639 None:intergenic 40.0%
GGAAGGTAGTTTCTGTCTAA+GGG + Chr1:60985686-60985705 None:intergenic 40.0%
TATTGCAGCCCTCTACAATT+TGG - Chr1:60987287-60987306 MsG0180003350.01.T01:intron 40.0%
TTATGGTTGGAGGGAGAAAA+TGG + Chr1:60986513-60986532 None:intergenic 40.0%
! CATTTGGAACATCATTGGCA+AGG - Chr1:60987709-60987728 MsG0180003350.01.T01:intron 40.0%
! GTAATCCTTGTTTGGATTCG+TGG + Chr1:60987437-60987456 None:intergenic 40.0%
!! CATGCAAAGAAGGTGTCATT+TGG - Chr1:60987693-60987712 MsG0180003350.01.T01:intron 40.0%
!! GGTGTCATTTGGAACATCAT+TGG - Chr1:60987704-60987723 MsG0180003350.01.T01:intron 40.0%
ACCAAATGGTCCTGAGAAGT+GGG - Chr1:60985562-60985581 MsG0180003350.01.T01:three_prime_UTR 45.0%
ACCTTGGAGATTAGAGGATC+AGG + Chr1:60987318-60987337 None:intergenic 45.0%
AGAGGTCTCGAGTTCAAATG+TGG + Chr1:60986201-60986220 None:intergenic 45.0%
ATGACACCTTCTTTGCATGG+AGG + Chr1:60987692-60987711 None:intergenic 45.0%
CAGGATCACCCAAATTGTAG+AGG + Chr1:60987299-60987318 None:intergenic 45.0%
CGTTTGCAGCATGCTCAAAT+GGG - Chr1:60985600-60985619 MsG0180003350.01.T01:three_prime_UTR 45.0%
CTAGCCAATGAGAATCGTGT+GGG - Chr1:60987569-60987588 MsG0180003350.01.T01:intron 45.0%
CTCTACATCAAACGTGCCAA+GGG + Chr1:60987615-60987634 None:intergenic 45.0%
CTCTGCCTCATGACTGTATT+TGG + Chr1:60987223-60987242 None:intergenic 45.0%
CTTCTGTAAGGTGAACTAGG+TGG + Chr1:60987248-60987267 None:intergenic 45.0%
GGTGTCTAGGTATCAGTGTT+GGG - Chr1:60985907-60985926 MsG0180003350.01.T01:intron 45.0%
TAGAGTTCCAGCACAATGCA+AGG - Chr1:60987963-60987982 MsG0180003350.01.T01:intron 45.0%
TCCTGATCCTCTAATCTCCA+AGG - Chr1:60987314-60987333 MsG0180003350.01.T01:intron 45.0%
TCCTTCTTTCTGATCTGCCA+CGG + Chr1:60986726-60986745 None:intergenic 45.0%
TCGTTTGCAGCATGCTCAAA+TGG - Chr1:60985599-60985618 MsG0180003350.01.T01:three_prime_UTR 45.0%
TGACACCTTCTTTGCATGGA+GGG + Chr1:60987691-60987710 None:intergenic 45.0%
TTGGGAGAGAAGAAGAGAGA+GGG + Chr1:60986152-60986171 None:intergenic 45.0%
TTTGAGCATGCTGCAAACGA+TGG + Chr1:60985599-60985618 None:intergenic 45.0%
TTTGGGAGAGAAGAAGAGAG+AGG + Chr1:60986153-60986172 None:intergenic 45.0%
! AAACGTGCCAAGGGCAATTT+TGG + Chr1:60987606-60987625 None:intergenic 45.0%
! TATGTAGAACTTTTGGCCCG+TGG - Chr1:60986706-60986725 MsG0180003350.01.T01:intron 45.0%
!!! AATATTTTTTATATTTAACT+CGG - Chr1:60986748-60986767 MsG0180003350.01.T01:intron 5.0%
ACTACCCCTCCATGCAAAGA+AGG - Chr1:60987683-60987702 MsG0180003350.01.T01:intron 50.0%
AGGCCACTTCAGCCATTGAA+TGG - Chr1:60987983-60988002 MsG0180003350.01.T01:CDS 50.0%
ATTGCTGTCCGGGATTCAGT+TGG + Chr1:60986653-60986672 None:intergenic 50.0%
CCAAATGGTCCTGAGAAGTG+GGG - Chr1:60985563-60985582 MsG0180003350.01.T01:three_prime_UTR 50.0%
CCTCTACATCAAACGTGCCA+AGG + Chr1:60987616-60987635 None:intergenic 50.0%
CCTTCTTTCTGATCTGCCAC+GGG + Chr1:60986725-60986744 None:intergenic 50.0%
CCTTGGCACGTTTGATGTAG+AGG - Chr1:60987613-60987632 MsG0180003350.01.T01:CDS 50.0%
CGACCATTCAATGGCTGAAG+TGG + Chr1:60987989-60988008 None:intergenic 50.0%
CGGTGTCTAGGTATCAGTGT+TGG - Chr1:60985906-60985925 MsG0180003350.01.T01:intron 50.0%
GACACCTTCTTTGCATGGAG+GGG + Chr1:60987690-60987709 None:intergenic 50.0%
GACCAAATGGTCCTGAGAAG+TGG - Chr1:60985561-60985580 MsG0180003350.01.T01:three_prime_UTR 50.0%
GCTAGCCAATGAGAATCGTG+TGG - Chr1:60987568-60987587 MsG0180003350.01.T01:intron 50.0%
GTTGCCCACACGATTCTCAT+TGG + Chr1:60987576-60987595 None:intergenic 50.0%
TGTCCGGGATTCAGTTGGTT+GGG + Chr1:60986648-60986667 None:intergenic 50.0%
! ATGCTGCAAACGATGGACTC+AGG + Chr1:60985592-60985611 None:intergenic 50.0%
! TGCTGCAAACGATGGACTCA+GGG + Chr1:60985591-60985610 None:intergenic 50.0%
! TGGGAAAGCACAAAGTCCAG+TGG - Chr1:60985619-60985638 MsG0180003350.01.T01:three_prime_UTR 50.0%
CCCCACTTCTCAGGACCATT+TGG + Chr1:60985566-60985585 None:intergenic 55.0%
CCCGTGGCAGATCAGAAAGA+AGG - Chr1:60986722-60986741 MsG0180003350.01.T01:intron 55.0%
CGTCCCAACCAACTGAATCC+CGG - Chr1:60986642-60986661 MsG0180003350.01.T01:intron 55.0%
CTGTCCGGGATTCAGTTGGT+TGG + Chr1:60986649-60986668 None:intergenic 55.0%
TGCTGGAACTCTACACCCAG+TGG + Chr1:60987956-60987975 None:intergenic 55.0%
! GAAGTGGCCTTGCATTGTGC+TGG + Chr1:60987973-60987992 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+CGG + Chr1:60986607-60986626 None:intergenic 60.0%
CTCAGGGTTCCCCACTTCTC+AGG + Chr1:60985575-60985594 None:intergenic 60.0%
GCATGCACCTGCAGAGCACA+GGG - Chr1:60986086-60986105 MsG0180003350.01.T01:CDS 60.0%
CCATGAGCCCTGTGCTCTGC+AGG + Chr1:60986096-60986115 None:intergenic 65.0%
CCTGCAGAGCACAGGGCTCA+TGG - Chr1:60986093-60986112 MsG0180003350.01.T01:CDS 65.0%
GGCATGCACCTGCAGAGCAC+AGG - Chr1:60986085-60986104 MsG0180003350.01.T01:CDS 65.0%
CGTGGCCGGGGTTTGAACCC+CGG - Chr1:60986599-60986618 MsG0180003350.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 60985313 60988396 60985313 ID=MsG0180003350.01;Name=MsG0180003350.01
Chr1 mRNA 60985313 60988396 60985313 ID=MsG0180003350.01.T01;Parent=MsG0180003350.01;Name=MsG0180003350.01.T01;_AED=0.49;_eAED=0.49;_QI=38|1|1|1|1|1|6|357|267
Chr1 exon 60985313 60985798 60985313 ID=MsG0180003350.01.T01:exon:23320;Parent=MsG0180003350.01.T01
Chr1 exon 60985979 60986161 60985979 ID=MsG0180003350.01.T01:exon:23319;Parent=MsG0180003350.01.T01
Chr1 exon 60986374 60986479 60986374 ID=MsG0180003350.01.T01:exon:23318;Parent=MsG0180003350.01.T01
Chr1 exon 60987588 60987694 60987588 ID=MsG0180003350.01.T01:exon:23317;Parent=MsG0180003350.01.T01
Chr1 exon 60987964 60988172 60987964 ID=MsG0180003350.01.T01:exon:23316;Parent=MsG0180003350.01.T01
Chr1 exon 60988289 60988396 60988289 ID=MsG0180003350.01.T01:exon:23315;Parent=MsG0180003350.01.T01
Chr1 five_prime_UTR 60988359 60988396 60988359 ID=MsG0180003350.01.T01:five_prime_utr;Parent=MsG0180003350.01.T01
Chr1 CDS 60988289 60988358 60988289 ID=MsG0180003350.01.T01:cds;Parent=MsG0180003350.01.T01
Chr1 CDS 60987964 60988172 60987964 ID=MsG0180003350.01.T01:cds;Parent=MsG0180003350.01.T01
Chr1 CDS 60987588 60987694 60987588 ID=MsG0180003350.01.T01:cds;Parent=MsG0180003350.01.T01
Chr1 CDS 60986374 60986479 60986374 ID=MsG0180003350.01.T01:cds;Parent=MsG0180003350.01.T01
Chr1 CDS 60985979 60986161 60985979 ID=MsG0180003350.01.T01:cds;Parent=MsG0180003350.01.T01
Chr1 CDS 60985670 60985798 60985670 ID=MsG0180003350.01.T01:cds;Parent=MsG0180003350.01.T01
Chr1 three_prime_UTR 60985313 60985669 60985313 ID=MsG0180003350.01.T01:three_prime_utr;Parent=MsG0180003350.01.T01
Gene Sequence

>MsG0180003350.01.T01

ATGGCTTTGCAGATTTACTTCTCAATTCTTCTTATTGCAACTTTGGCTCTATGCACTTCAGCAAATTATAATTCGGTTAATTTTAGTTATATTGGACCAAATGGTCCTGAGAAGTGGGGAACCCTGAGTCCATCGTTTGCAGCATGCTCAAATGGGAAAGCACAAAGTCCAGTGGAACTTGTAATGAATGATATTGTCATGAACCAAGAATTGAAACCCTTAGACAGAAACTACCTTCCTACAAATGCTACACTTGTTAACAACCAATTCAACATTGGGGTACATTTTGAAGGAAAAGTTGGAGATATTAACATAAATGGAATGAATTACTCATTAAAACAACTTCATTGGCATGCACCTGCAGAGCACAGGGCTCATGGTCGTTTTCATGAGGCAGAGCTCCACCTAGTTCACCTTACAGAAGATAACAATAACATAGCAGTTATTGCAGCCCTCTACAATTTGGGTGATCCTGATCCTCTAATCTCCAAGATTGAAGACAAGTTCTATGAGCTAGCCAATGAGAATCGTGTGGGCAACAAAGATGCCAAAATTGCCCTTGGCACGTTTGATGTAGAGGAAATAAATAAAAGGATCCATAGATATTATAGATATGTTGGCTCTCTCACTACCCCTCCATGCAAAGAAGGTGTCATTTGGAACATCATTGGCAAGGTTAGGACACTCTCCAAAGAACAACTAAAACTTTTAAAGGCACCACTGGGTGTAGAGTTCCAGCACAATGCAAGGCCACTTCAGCCATTGAATGGTCGCAAAATTGAGATGTACAACTACCACAAATAG

Protein sequence

>MsG0180003350.01.T01

MALQIYFSILLIATLALCTSANYNSVNFSYIGPNGPEKWGTLSPSFAACSNGKAQSPVELVMNDIVMNQELKPLDRNYLPTNATLVNNQFNIGVHFEGKVGDININGMNYSLKQLHWHAPAEHRAHGRFHEAELHLVHLTEDNNNIAVIAALYNLGDPDPLISKIEDKFYELANENRVGNKDAKIALGTFDVEEINKRIHRYYRYVGSLTTPPCKEGVIWNIIGKVRTLSKEQLKLLKAPLGVEFQHNARPLQPLNGRKIEMYNYHK*