AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010055.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010055.01.T01 MTR_2g076590 80.909 440 77 4 1 435 1 438 0.0 711
MsG0280010055.01.T01 MTR_2g076490 80.137 438 64 4 1 435 1 418 0.0 705
MsG0280010055.01.T01 MTR_2g076610 71.141 298 62 3 89 384 19 294 5.01e-149 426
MsG0280010055.01.T01 MTR_2g076650 77.600 250 40 2 33 282 2 235 8.74e-138 395
MsG0280010055.01.T01 MTR_2g089440 27.346 373 216 15 93 432 80 430 2.31e-21 97.4
MsG0280010055.01.T01 MTR_7g092050 28.065 367 214 19 60 409 48 381 2.81e-21 97.1
MsG0280010055.01.T01 MTR_1g012550 25.840 387 233 16 63 432 65 414 4.62e-21 96.7
MsG0280010055.01.T01 MTR_3g031480 26.446 363 220 14 63 402 45 383 1.41e-19 92.0
MsG0280010055.01.T01 MTR_1g099400 24.286 420 254 20 60 432 33 435 1.73e-19 91.7
MsG0280010055.01.T01 MTR_2g089360 26.431 367 216 15 93 428 77 420 2.67e-19 91.3
MsG0280010055.01.T01 MTR_3g031640 26.404 356 230 12 63 403 42 380 3.58e-19 90.9
MsG0280010055.01.T01 MTR_3g031580 25.837 418 264 16 34 433 18 407 4.13e-19 90.5
MsG0280010055.01.T01 MTR_7g058830 26.263 396 247 17 60 433 47 419 3.35e-18 87.8
MsG0280010055.01.T01 MTR_0280s0040 26.168 428 234 20 51 432 38 429 4.35e-18 87.4
MsG0280010055.01.T01 MTR_7g056663 24.260 338 204 14 93 400 75 390 6.15e-18 87.0
MsG0280010055.01.T01 MTR_7g058530 27.128 376 234 14 60 416 48 402 8.50e-18 86.7
MsG0280010055.01.T01 MTR_2g011160 25.556 360 223 14 63 400 48 384 1.24e-17 85.9
MsG0280010055.01.T01 MTR_2g011160 25.556 360 223 14 63 400 48 384 1.35e-17 85.5
MsG0280010055.01.T01 MTR_8g465510 25.867 375 223 13 57 400 38 388 2.62e-17 85.1
MsG0280010055.01.T01 MTR_3g102400 25.474 369 213 16 60 397 45 382 2.81e-17 84.7
MsG0280010055.01.T01 MTR_7g072460 25.749 334 206 14 112 433 101 404 2.94e-17 84.0
MsG0280010055.01.T01 MTR_3g107070 23.016 378 250 12 63 430 41 387 3.07e-17 84.7
MsG0280010055.01.T01 MTR_4g098890 22.353 340 212 13 93 402 652 969 3.12e-17 85.1
MsG0280010055.01.T01 MTR_2g011150 26.111 360 221 14 63 400 50 386 4.35e-17 84.3
MsG0280010055.01.T01 MTR_3g031610 25.191 393 254 13 63 435 42 414 5.53e-17 84.0
MsG0280010055.01.T01 MTR_2g073250 24.079 407 238 18 52 432 52 413 7.32e-17 83.6
MsG0280010055.01.T01 MTR_3g031470 27.424 361 226 14 63 402 44 389 9.89e-17 83.2
MsG0280010055.01.T01 MTR_7g056450 24.934 381 233 18 52 405 47 401 1.74e-16 82.4
MsG0280010055.01.T01 MTR_7g056450 24.934 381 233 18 52 405 37 391 2.17e-16 82.0
MsG0280010055.01.T01 MTR_2g011170 25.826 333 201 12 93 400 73 384 6.65e-16 80.5
MsG0280010055.01.T01 MTR_2g011170 25.826 333 201 12 93 400 73 384 6.88e-16 80.5
MsG0280010055.01.T01 MTR_3g031500 26.593 361 208 16 96 433 2 328 1.31e-15 79.7
MsG0280010055.01.T01 MTR_7g056510 23.939 330 209 12 93 400 65 374 2.67e-15 78.6
MsG0280010055.01.T01 MTR_5g067290 42.478 113 59 3 91 197 78 190 2.92e-15 77.8
MsG0280010055.01.T01 MTR_7g056510 23.939 330 209 12 93 400 75 384 3.40e-15 78.2
MsG0280010055.01.T01 MTR_7g056510 23.939 330 209 12 93 400 75 384 3.62e-15 78.2
MsG0280010055.01.T01 MTR_2g011180 25.444 338 200 16 93 400 76 391 3.98e-15 78.2
MsG0280010055.01.T01 MTR_7g056510 23.939 330 209 12 93 400 75 384 4.35e-15 77.8
MsG0280010055.01.T01 MTR_7g056510 23.939 330 209 12 93 400 75 384 4.71e-15 77.8
MsG0280010055.01.T01 MTR_3g031600 26.479 355 229 12 63 402 42 379 5.03e-15 77.8
MsG0280010055.01.T01 MTR_2g011180 25.444 338 200 15 93 400 76 391 6.71e-15 77.4
MsG0280010055.01.T01 MTR_5g067250 24.927 341 210 11 91 406 77 396 7.23e-15 77.4
MsG0280010055.01.T01 MTR_8g013560 25.806 372 220 17 93 433 77 423 1.89e-14 76.3
MsG0280010055.01.T01 MTR_3g031490 25.815 399 241 18 63 433 42 413 2.97e-14 75.5
MsG0280010055.01.T01 MTR_2g080100 23.058 399 237 18 60 432 61 415 3.32e-14 75.1
MsG0280010055.01.T01 MTR_8g030500 24.688 401 253 18 60 433 31 409 4.84e-14 74.7
MsG0280010055.01.T01 MTR_7g056623 25.797 345 195 17 93 403 55 372 7.06e-14 74.3
MsG0280010055.01.T01 MTR_2g080080 23.398 359 211 17 93 430 90 405 7.99e-14 73.9
MsG0280010055.01.T01 MTR_2g103810 37.168 113 66 2 60 172 56 163 1.02e-13 73.9
MsG0280010055.01.T01 MTR_8g013610 24.599 374 223 15 93 433 78 425 1.04e-13 73.9
MsG0280010055.01.T01 MTR_6g043510 26.690 281 164 12 93 360 72 323 1.19e-13 73.6
MsG0280010055.01.T01 MTR_7g056430 23.932 351 209 19 90 405 410 737 3.16e-13 72.4
MsG0280010055.01.T01 MTR_6g043790 26.515 264 142 10 93 339 77 305 3.61e-13 72.0
MsG0280010055.01.T01 MTR_7g056420 23.932 351 209 19 90 405 410 737 3.62e-13 72.4
MsG0280010055.01.T01 MTR_2g080090 22.951 366 215 17 93 432 90 414 4.26e-13 71.6
MsG0280010055.01.T01 MTR_8g465470 23.056 373 218 16 63 400 78 416 6.95e-13 71.2
MsG0280010055.01.T01 MTR_7g103870 26.263 396 232 18 63 432 63 424 8.22e-13 70.5
MsG0280010055.01.T01 MTR_3g007650 25.000 476 268 22 1 432 5 435 8.49e-13 70.9
MsG0280010055.01.T01 MTR_8g465580 24.750 400 257 17 60 434 43 423 1.39e-12 70.1
MsG0280010055.01.T01 MTR_3g007630 23.709 426 236 18 60 432 45 434 1.41e-12 70.1
MsG0280010055.01.T01 MTR_2g089290 44.444 90 42 4 93 177 84 170 1.94e-12 69.7
MsG0280010055.01.T01 MTR_4g114240 22.951 427 289 18 1 402 1 412 3.66e-12 68.9
MsG0280010055.01.T01 MTR_8g465990 24.036 337 203 14 93 400 77 389 3.68e-12 68.6
MsG0280010055.01.T01 MTR_8g465410 25.500 400 254 17 60 434 43 423 4.16e-12 68.6
MsG0280010055.01.T01 MTR_3g019530 25.826 333 196 16 93 400 79 385 4.56e-12 68.6
MsG0280010055.01.T01 MTR_3g019530 25.826 333 196 16 93 400 79 385 5.09e-12 68.6
MsG0280010055.01.T01 MTR_3g019530 25.826 333 196 16 93 400 79 385 5.34e-12 68.6
MsG0280010055.01.T01 MTR_3g019530 25.826 333 196 16 93 400 79 385 5.48e-12 68.2
MsG0280010055.01.T01 MTR_8g465990 24.036 337 203 14 93 400 77 389 5.63e-12 68.2
MsG0280010055.01.T01 MTR_8g465990 24.036 337 203 14 93 400 77 389 5.71e-12 68.2
MsG0280010055.01.T01 MTR_3g019530 25.826 333 196 16 93 400 79 385 6.03e-12 68.2
MsG0280010055.01.T01 MTR_7g056617 24.638 345 210 15 93 409 81 403 7.08e-12 67.8
MsG0280010055.01.T01 MTR_4g081665 24.933 373 207 16 63 400 46 380 1.03e-11 67.4
MsG0280010055.01.T01 MTR_4g081675 25.664 339 200 17 91 400 73 388 1.13e-11 67.4
MsG0280010055.01.T01 MTR_7g056640 24.625 333 209 14 93 403 103 415 1.49e-11 67.0
MsG0280010055.01.T01 MTR_2g081500 36.364 121 69 5 93 205 76 196 1.80e-11 66.6
MsG0280010055.01.T01 MTR_3g020330 24.773 331 203 14 93 400 79 386 1.99e-11 66.6
MsG0280010055.01.T01 MTR_1g052880 23.832 428 226 19 46 414 29 415 2.08e-11 66.6
MsG0280010055.01.T01 MTR_4g081685 25.000 372 223 18 60 400 43 389 2.46e-11 66.2
MsG0280010055.01.T01 MTR_2g011190 28.400 250 142 12 93 328 80 306 4.70e-11 65.5
MsG0280010055.01.T01 MTR_4g081730 26.113 337 199 16 93 400 73 388 5.40e-11 65.1
MsG0280010055.01.T01 MTR_3g020230 25.904 332 200 18 93 400 79 388 5.72e-11 65.1
MsG0280010055.01.T01 MTR_5g013070 24.103 390 229 15 63 410 47 411 5.85e-11 65.1
MsG0280010055.01.T01 MTR_8g011410 23.810 357 202 16 93 410 80 405 6.37e-11 65.1
MsG0280010055.01.T01 MTR_8g051540 32.461 191 109 9 69 246 68 251 7.73e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010055.01.T01 AT1G78860 47.454 432 209 8 15 434 9 434 6.28e-138 403
MsG0280010055.01.T01 AT1G78850 46.050 443 221 7 1 434 1 434 2.91e-137 401
MsG0280010055.01.T01 AT1G78830 43.202 456 219 11 10 431 5 454 2.43e-118 353
MsG0280010055.01.T01 AT1G78820 41.304 460 230 11 6 431 1 454 9.95e-113 339
MsG0280010055.01.T01 AT1G16905 42.143 420 209 7 28 434 24 422 8.73e-112 335
MsG0280010055.01.T01 AT4G00340 26.954 371 231 14 54 407 31 378 5.38e-23 102
MsG0280010055.01.T01 AT4G00340 26.954 371 231 14 54 407 31 378 5.39e-23 102
MsG0280010055.01.T01 AT5G24080 25.000 400 238 17 60 415 49 430 5.14e-22 99.8
MsG0280010055.01.T01 AT4G32300 24.725 364 234 12 60 411 52 387 2.30e-21 97.4
MsG0280010055.01.T01 AT5G35370 24.033 362 228 15 93 432 86 422 3.58e-20 94.0
MsG0280010055.01.T01 AT1G61380 26.844 339 197 15 93 402 70 386 9.78e-19 89.4
MsG0280010055.01.T01 AT4G21390 25.680 331 208 12 93 400 79 394 4.85e-18 87.4
MsG0280010055.01.T01 AT1G11330 25.513 341 207 13 93 404 84 406 5.06e-18 87.0
MsG0280010055.01.T01 AT4G21390 25.680 331 208 12 93 400 79 394 5.12e-18 87.4
MsG0280010055.01.T01 AT4G11900 24.795 488 241 25 14 432 16 446 6.05e-18 86.7
MsG0280010055.01.T01 AT4G11900 24.795 488 241 25 14 432 16 446 6.05e-18 86.7
MsG0280010055.01.T01 AT4G11900 24.694 490 243 25 14 434 16 448 6.72e-18 86.7
MsG0280010055.01.T01 AT4G11900 24.694 490 243 25 14 434 16 448 6.86e-18 86.7
MsG0280010055.01.T01 AT4G11900 24.694 490 243 25 14 434 16 448 6.86e-18 86.7
MsG0280010055.01.T01 AT1G11330 25.513 341 207 13 93 404 84 406 6.91e-18 87.0
MsG0280010055.01.T01 AT1G11330 25.513 341 207 13 93 404 84 406 7.41e-18 86.7
MsG0280010055.01.T01 AT4G11900 24.694 490 243 25 14 434 16 448 8.02e-18 86.7
MsG0280010055.01.T01 AT4G11900 24.694 490 243 25 14 434 16 448 8.02e-18 86.7
MsG0280010055.01.T01 AT3G12000 26.486 370 224 16 63 405 56 404 8.17e-18 85.5
MsG0280010055.01.T01 AT4G11900 24.694 490 243 25 14 434 16 448 9.67e-18 86.3
MsG0280010055.01.T01 AT4G11900 26.382 398 207 21 93 434 12 379 3.22e-17 84.7
MsG0280010055.01.T01 AT4G11900 26.382 398 207 21 93 434 12 379 4.83e-17 84.3
MsG0280010055.01.T01 AT5G03700 23.940 401 235 17 55 432 56 409 5.76e-16 80.1
MsG0280010055.01.T01 AT3G51710 22.319 345 218 10 102 434 103 409 1.28e-15 79.3
MsG0280010055.01.T01 AT1G65790 26.796 362 214 17 63 400 51 385 3.52e-15 78.2
MsG0280010055.01.T01 AT1G65790 26.796 362 214 17 63 400 51 385 3.52e-15 78.2
MsG0280010055.01.T01 AT1G65790 27.108 332 195 15 92 400 78 385 3.83e-15 78.2
MsG0280010055.01.T01 AT1G61610 26.455 378 214 20 60 400 48 398 3.97e-15 78.2
MsG0280010055.01.T01 AT1G61610 26.455 378 214 20 60 400 48 398 4.61e-15 78.2
MsG0280010055.01.T01 AT1G61370 24.490 343 201 12 93 402 74 391 6.58e-15 77.4
MsG0280010055.01.T01 AT2G19130 22.604 407 264 18 51 430 34 416 7.92e-15 77.4
MsG0280010055.01.T01 AT1G61360 25.664 339 201 14 93 402 69 385 1.05e-14 77.0
MsG0280010055.01.T01 AT2G41890 27.215 316 194 12 103 405 91 383 2.22e-14 75.9
MsG0280010055.01.T01 AT1G11300 22.714 339 206 12 93 399 77 391 1.93e-13 73.2
MsG0280010055.01.T01 AT1G11300 22.714 339 206 12 93 399 77 391 1.94e-13 72.8
MsG0280010055.01.T01 AT1G34300 25.260 289 174 12 60 342 46 298 1.69e-12 70.1
MsG0280010055.01.T01 AT4G27290 23.023 430 247 18 9 400 4 387 5.47e-12 68.6
MsG0280010055.01.T01 AT4G27290 23.023 430 247 18 9 400 4 387 5.96e-12 68.2
MsG0280010055.01.T01 AT1G61360 24.923 325 194 13 106 402 2 304 6.63e-12 68.2
MsG0280010055.01.T01 AT1G61360 24.923 325 194 13 106 402 2 304 6.63e-12 68.2
MsG0280010055.01.T01 AT1G61360 24.923 325 194 13 106 402 2 304 6.63e-12 68.2
MsG0280010055.01.T01 AT1G61420 25.513 341 193 17 93 402 73 383 7.88e-12 67.8
MsG0280010055.01.T01 AT1G61420 25.513 341 193 17 93 402 73 383 8.31e-12 67.8
MsG0280010055.01.T01 AT1G61420 25.513 341 193 17 93 402 73 383 8.31e-12 67.8
MsG0280010055.01.T01 AT1G61480 24.629 337 201 16 93 402 73 383 9.57e-12 67.8
MsG0280010055.01.T01 AT1G65800 36.000 150 84 6 63 203 51 197 1.83e-11 66.6
MsG0280010055.01.T01 AT1G65800 36.000 150 84 6 63 203 51 197 2.56e-11 66.2
MsG0280010055.01.T01 AT1G11280 24.036 337 208 14 93 402 77 392 4.56e-11 65.5
MsG0280010055.01.T01 AT1G11280 24.036 337 208 14 93 402 77 392 5.87e-11 65.1
MsG0280010055.01.T01 AT1G11280 24.036 337 208 14 93 402 87 402 6.55e-11 65.1
MsG0280010055.01.T01 AT1G11280 24.036 337 208 14 93 402 77 392 6.59e-11 65.1
MsG0280010055.01.T01 AT1G11280 24.036 337 208 14 93 402 87 402 6.92e-11 65.1
MsG0280010055.01.T01 AT1G61400 24.702 336 202 15 93 402 83 393 9.07e-11 64.7
MsG0280010055.01.T01 AT1G61400 24.702 336 202 15 93 402 83 393 9.18e-11 64.7

Find 74 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTGATCAATATTTAA+AGG 0.203871 2:+63555970 MsG0280010055.01.T01:CDS
CCTATTGGAATTCATCTAAT+TGG 0.210505 2:+63556122 MsG0280010055.01.T01:CDS
CCAGAGAGATGTGGAAAATT+TGG 0.215504 2:+63556418 MsG0280010055.01.T01:CDS
GATCAATATTTAAAGGCTAA+TGG 0.303903 2:+63555977 MsG0280010055.01.T01:CDS
ATACTAAAGGTAAATTTGTT+TGG 0.328214 2:+63555918 MsG0280010055.01.T01:CDS
GTTAAAGTGCTATTATTTAC+CGG 0.352398 2:-63556268 None:intergenic
CAAACAAATACTTCGAATAA+AGG 0.354635 2:+63555848 MsG0280010055.01.T01:CDS
TAATATAAAGTCAACCCTTT+GGG 0.365772 2:-63556070 None:intergenic
GGCTTATCTTATTACTTATT+AGG 0.367191 2:-63556763 None:intergenic
CCAATTAGATGAATTCCAAT+AGG 0.367562 2:-63556122 None:intergenic
GATGAATTCCAATAGGGAAT+TGG 0.367962 2:-63556115 None:intergenic
GGACCATTCATAGTAGAATA+TGG 0.369527 2:+63555593 MsG0280010055.01.T01:CDS
ATAAAGGTGTTGTTGCCTTT+AGG 0.371600 2:+63555864 MsG0280010055.01.T01:CDS
CACCTAGGCCAATTCCCTAT+TGG 0.373218 2:+63556107 MsG0280010055.01.T01:CDS
ATATCTGATCCATTTGAGAT+TGG 0.374078 2:+63556190 MsG0280010055.01.T01:CDS
ATAGCACTTTAACATATCTA+AGG 0.382513 2:+63556278 MsG0280010055.01.T01:CDS
TGTTGATGGACCTTATAGTT+TGG 0.383460 2:+63556039 MsG0280010055.01.T01:CDS
AGAGCTAGAGTGAAGGCATT+TGG 0.389629 2:-63555680 None:intergenic
TTAAATATTGATCAACCAAA+AGG 0.390291 2:-63555967 None:intergenic
TCATCCTACAGATACCCTTT+TGG 0.400336 2:+63555952 MsG0280010055.01.T01:CDS
GTAATATAAAGTCAACCCTT+TGG 0.401606 2:-63556071 None:intergenic
GACCTTCAAAACTTGTTAGT+AGG 0.402178 2:+63555999 MsG0280010055.01.T01:CDS
GCCTTTAGGTTACTCTCAAA+TGG 0.414987 2:+63555878 MsG0280010055.01.T01:CDS
TTTGTCAACTCAGGTGAACT+TGG 0.428871 2:+63555572 MsG0280010055.01.T01:CDS
TATCTAAGGCTAGGAATTGA+TGG 0.429940 2:+63556292 MsG0280010055.01.T01:CDS
TTTCATTACTACAAAATTGA+AGG 0.432875 2:+63556547 MsG0280010055.01.T01:CDS
ACCTGAGTTGACAAATTTGA+AGG 0.439119 2:-63555564 None:intergenic
TTGATGTGCGTGATGGTGTT+TGG 0.440720 2:+63556341 MsG0280010055.01.T01:CDS
AAGTGCAATCCAATCTCAAA+TGG 0.453322 2:-63556199 None:intergenic
GCCAACACACTTACAATCCT+TGG 0.454150 2:-63556641 None:intergenic
TGGAGAATGGAACATTTGCT+TGG 0.471864 2:+63556476 MsG0280010055.01.T01:CDS
CCTCCATATTCTACTATGAA+TGG 0.498115 2:-63555596 None:intergenic
GAACAATAATGTGAGAAAAG+AGG 0.499200 2:-63555492 None:intergenic
CAATTAGATGAATTCCAATA+GGG 0.502032 2:-63556121 None:intergenic
TTCACTCTAGCTCTTCGAAT+GGG 0.502190 2:+63555689 MsG0280010055.01.T01:CDS
TTTCACAATGTTGCCTCTGG+TGG 0.505022 2:+63556226 MsG0280010055.01.T01:CDS
TTCAATGCTCCATTCCAAGT+TGG 0.505787 2:+63555641 MsG0280010055.01.T01:CDS
AACACCTTGAGTTATCTTTG+TGG 0.506678 2:-63556672 None:intergenic
ACCATTTGAGAGTAACCTAA+AGG 0.511899 2:-63555879 None:intergenic
TCGAATGGGACTTCAACGTT+CGG 0.513870 2:+63555703 MsG0280010055.01.T01:CDS
TAAATATTGATCAACCAAAA+GGG 0.517574 2:-63555966 None:intergenic
ACCTTCAAATTTGTCAACTC+AGG 0.519002 2:+63555563 MsG0280010055.01.T01:CDS
TATTTGCTTCCCACACCCAC+CGG 0.528405 2:-63555736 None:intergenic
ATGCTGATGGAAGAATTGTT+TGG 0.528512 2:+63555825 MsG0280010055.01.T01:CDS
CTTGTGTTGGCTAATGCTGA+TGG 0.532407 2:+63555812 MsG0280010055.01.T01:CDS
TATGAAAATATTTAGTGAGC+CGG 0.539381 2:+63556249 MsG0280010055.01.T01:CDS
TACATGAGTAAATACACTAC+TGG 0.539734 2:+63556580 MsG0280010055.01.T01:CDS
TTCCAATAGGGAATTGGCCT+AGG 0.540750 2:-63556109 None:intergenic
GTTGGTTGTCCATTGGAGAA+TGG 0.552362 2:+63556463 MsG0280010055.01.T01:CDS
TTGTAGAAACCAACTTGGAA+TGG 0.552949 2:-63555650 None:intergenic
TGGGTGTGGGAAGCAAATAA+AGG 0.558011 2:+63555740 MsG0280010055.01.T01:CDS
TCAATGTGTTGGTTGTCCAT+TGG 0.564083 2:+63556456 MsG0280010055.01.T01:CDS
GATTGCATGAGAAATGAAAG+TGG 0.566775 2:-63555525 None:intergenic
ACAAAGATAACTCAAGGTGT+TGG 0.569098 2:+63556674 MsG0280010055.01.T01:CDS
TGGAAAATTTGGACTTTGTG+AGG 0.578223 2:+63556429 MsG0280010055.01.T01:CDS
AAACACCATCACGCACATCA+AGG 0.588769 2:-63556339 None:intergenic
ACTTTAACATATCTAAGGCT+AGG 0.589291 2:+63556283 MsG0280010055.01.T01:CDS
TATTTCCTTGATGTGCGTGA+TGG 0.592648 2:+63556334 MsG0280010055.01.T01:CDS
GTTACTCTCAAATGGTAACA+TGG 0.602406 2:+63555886 MsG0280010055.01.T01:CDS
CTTAATAAAACCCACATGTG+TGG 0.606669 2:-63556737 None:intergenic
GCAAATGTTCCATTCTCCAA+TGG 0.608211 2:-63556472 None:intergenic
TGTGAGGATAGTCAATGTGT+TGG 0.608846 2:+63556445 MsG0280010055.01.T01:CDS
CTTCACTCTAGCTCTTCGAA+TGG 0.609842 2:+63555688 MsG0280010055.01.T01:CDS
AGTTCAAAATACCACACATG+TGG 0.615945 2:+63556726 MsG0280010055.01.T01:CDS
TAGTGTTGTAGAAACCAACT+TGG 0.616231 2:-63555655 None:intergenic
TGTTGATGGAAATCTTGTGT+TGG 0.627952 2:+63555799 MsG0280010055.01.T01:CDS
TCTACCACAAAGATAACTCA+AGG 0.628662 2:+63556668 MsG0280010055.01.T01:CDS
TCAACCAAAAGGGTATCTGT+AGG 0.635839 2:-63555956 None:intergenic
ACCAAGGATTGTAAGTGTGT+TGG 0.640719 2:+63556640 MsG0280010055.01.T01:CDS
TGTCAATTACCAGAGAGATG+TGG 0.650824 2:+63556409 MsG0280010055.01.T01:CDS
TTGTGCAAATAAATGTACCA+AGG 0.661724 2:+63556624 MsG0280010055.01.T01:CDS
GTTCAAAATACCACACATGT+GGG 0.676015 2:+63556727 MsG0280010055.01.T01:CDS
CATTCGAAGAGCTAGAGTGA+AGG 0.676387 2:-63555687 None:intergenic
CCATTCATAGTAGAATATGG+AGG 0.699892 2:+63555596 MsG0280010055.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATATTGATCAACCAAAA+GGG - Chr2:63555969-63555988 None:intergenic 20.0%
!! TTAAATATTGATCAACCAAA+AGG - Chr2:63555970-63555989 None:intergenic 20.0%
!! TTTCATTACTACAAAATTGA+AGG + Chr2:63556547-63556566 MsG0280010055.01.T01:CDS 20.0%
!! TTTGGTTGATCAATATTTAA+AGG + Chr2:63555970-63555989 MsG0280010055.01.T01:CDS 20.0%
!!! ATACTAAAGGTAAATTTGTT+TGG + Chr2:63555918-63555937 MsG0280010055.01.T01:CDS 20.0%
!!! ATGGTTTTAATTGATACTAA+AGG + Chr2:63555905-63555924 MsG0280010055.01.T01:CDS 20.0%
! ACAAAAGTAAAAATTCACCT+AGG + Chr2:63556092-63556111 MsG0280010055.01.T01:CDS 25.0%
! ATAGCACTTTAACATATCTA+AGG + Chr2:63556278-63556297 MsG0280010055.01.T01:CDS 25.0%
! CAAACAAATACTTCGAATAA+AGG + Chr2:63555848-63555867 MsG0280010055.01.T01:CDS 25.0%
! CAATTAGATGAATTCCAATA+GGG - Chr2:63556124-63556143 None:intergenic 25.0%
! GATCAATATTTAAAGGCTAA+TGG + Chr2:63555977-63555996 MsG0280010055.01.T01:CDS 25.0%
! TAATATAAAGTCAACCCTTT+GGG - Chr2:63556073-63556092 None:intergenic 25.0%
! TATGAAAATATTTAGTGAGC+CGG + Chr2:63556249-63556268 MsG0280010055.01.T01:CDS 25.0%
! TCAGAAAAAGAAAATGTTGA+TGG + Chr2:63556025-63556044 MsG0280010055.01.T01:CDS 25.0%
!! AATTTGAAGGTTTCATTTTG+TGG - Chr2:63555554-63555573 None:intergenic 25.0%
!! GTTAAAGTGCTATTATTTAC+CGG - Chr2:63556271-63556290 None:intergenic 25.0%
!!! GAAAATGCAACTTTTTCATT+AGG + Chr2:63555776-63555795 MsG0280010055.01.T01:CDS 25.0%
CCAATTAGATGAATTCCAAT+AGG - Chr2:63556125-63556144 None:intergenic 30.0%
CCTATTGGAATTCATCTAAT+TGG + Chr2:63556122-63556141 MsG0280010055.01.T01:CDS 30.0%
GAACAATAATGTGAGAAAAG+AGG - Chr2:63555495-63555514 None:intergenic 30.0%
GGATCAAAAACCAAACTATA+AGG - Chr2:63556052-63556071 None:intergenic 30.0%
GTAATATAAAGTCAACCCTT+TGG - Chr2:63556074-63556093 None:intergenic 30.0%
TACATGAGTAAATACACTAC+TGG + Chr2:63556580-63556599 MsG0280010055.01.T01:CDS 30.0%
TTGTGCAAATAAATGTACCA+AGG + Chr2:63556624-63556643 MsG0280010055.01.T01:CDS 30.0%
! AAAGTTGCATTTTCATCAAC+TGG - Chr2:63555770-63555789 None:intergenic 30.0%
! AAATATTTTCATACCACCAG+AGG - Chr2:63556242-63556261 None:intergenic 30.0%
! AAGTGTAATGCTAAGCTTTT+AGG + Chr2:63556505-63556524 MsG0280010055.01.T01:CDS 30.0%
! ACTTTAACATATCTAAGGCT+AGG + Chr2:63556283-63556302 MsG0280010055.01.T01:CDS 30.0%
! ATATCTGATCCATTTGAGAT+TGG + Chr2:63556190-63556209 MsG0280010055.01.T01:CDS 30.0%
! ATGTGAGAAAAGAGGTTTTT+AGG - Chr2:63555487-63555506 None:intergenic 30.0%
!!! ACTTTTTCATTAGGTGTTGA+TGG + Chr2:63555785-63555804 MsG0280010055.01.T01:CDS 30.0%
AACACCTTGAGTTATCTTTG+TGG - Chr2:63556675-63556694 None:intergenic 35.0%
AAGTGCAATCCAATCTCAAA+TGG - Chr2:63556202-63556221 None:intergenic 35.0%
ACAAAGATAACTCAAGGTGT+TGG + Chr2:63556674-63556693 MsG0280010055.01.T01:CDS 35.0%
ACCATTTGAGAGTAACCTAA+AGG - Chr2:63555882-63555901 None:intergenic 35.0%
ACCTTCAAATTTGTCAACTC+AGG + Chr2:63555563-63555582 MsG0280010055.01.T01:CDS 35.0%
AGTTCAAAATACCACACATG+TGG + Chr2:63556726-63556745 MsG0280010055.01.T01:CDS 35.0%
ATGCTGATGGAAGAATTGTT+TGG + Chr2:63555825-63555844 MsG0280010055.01.T01:CDS 35.0%
CCATTCATAGTAGAATATGG+AGG + Chr2:63555596-63555615 MsG0280010055.01.T01:CDS 35.0%
CCTCCATATTCTACTATGAA+TGG - Chr2:63555599-63555618 None:intergenic 35.0%
CTTAATAAAACCCACATGTG+TGG - Chr2:63556740-63556759 None:intergenic 35.0%
GATGAATTCCAATAGGGAAT+TGG - Chr2:63556118-63556137 None:intergenic 35.0%
GATTGCATGAGAAATGAAAG+TGG - Chr2:63555528-63555547 None:intergenic 35.0%
GGACCATTCATAGTAGAATA+TGG + Chr2:63555593-63555612 MsG0280010055.01.T01:CDS 35.0%
GTTACTCTCAAATGGTAACA+TGG + Chr2:63555886-63555905 MsG0280010055.01.T01:CDS 35.0%
GTTCAAAATACCACACATGT+GGG + Chr2:63556727-63556746 MsG0280010055.01.T01:CDS 35.0%
TAGTGTTGTAGAAACCAACT+TGG - Chr2:63555658-63555677 None:intergenic 35.0%
TCTACCACAAAGATAACTCA+AGG + Chr2:63556668-63556687 MsG0280010055.01.T01:CDS 35.0%
TGGAAAATTTGGACTTTGTG+AGG + Chr2:63556429-63556448 MsG0280010055.01.T01:CDS 35.0%
TTGTAGAAACCAACTTGGAA+TGG - Chr2:63555653-63555672 None:intergenic 35.0%
! ACCTGAGTTGACAAATTTGA+AGG - Chr2:63555567-63555586 None:intergenic 35.0%
! TATCTAAGGCTAGGAATTGA+TGG + Chr2:63556292-63556311 MsG0280010055.01.T01:CDS 35.0%
! TGTTGATGGAAATCTTGTGT+TGG + Chr2:63555799-63555818 MsG0280010055.01.T01:CDS 35.0%
! TGTTGATGGACCTTATAGTT+TGG + Chr2:63556039-63556058 MsG0280010055.01.T01:CDS 35.0%
!! AGCCTACTAACAAGTTTTGA+AGG - Chr2:63556004-63556023 None:intergenic 35.0%
!! ATAAAGGTGTTGTTGCCTTT+AGG + Chr2:63555864-63555883 MsG0280010055.01.T01:CDS 35.0%
!! GACCTTCAAAACTTGTTAGT+AGG + Chr2:63555999-63556018 MsG0280010055.01.T01:CDS 35.0%
!!! AGTTTGGTTTTTGATCCCAA+AGG + Chr2:63556055-63556074 MsG0280010055.01.T01:CDS 35.0%
!!! CACACATGTGGGTTTTATTA+AGG + Chr2:63556738-63556757 MsG0280010055.01.T01:CDS 35.0%
!!! GTTTGGTTTTTGATCCCAAA+GGG + Chr2:63556056-63556075 MsG0280010055.01.T01:CDS 35.0%
!!! TTTTTTCACAATGTTGCCTC+TGG + Chr2:63556223-63556242 MsG0280010055.01.T01:CDS 35.0%
ACCAAGGATTGTAAGTGTGT+TGG + Chr2:63556640-63556659 MsG0280010055.01.T01:CDS 40.0%
CCAGAGAGATGTGGAAAATT+TGG + Chr2:63556418-63556437 MsG0280010055.01.T01:CDS 40.0%
GCAAATGTTCCATTCTCCAA+TGG - Chr2:63556475-63556494 None:intergenic 40.0%
TATTTCCTTGATGTGCGTGA+TGG + Chr2:63556334-63556353 MsG0280010055.01.T01:CDS 40.0%
TGGAGAATGGAACATTTGCT+TGG + Chr2:63556476-63556495 MsG0280010055.01.T01:CDS 40.0%
TGTCAATTACCAGAGAGATG+TGG + Chr2:63556409-63556428 MsG0280010055.01.T01:CDS 40.0%
TGTGAGGATAGTCAATGTGT+TGG + Chr2:63556445-63556464 MsG0280010055.01.T01:CDS 40.0%
TTCAATGCTCCATTCCAAGT+TGG + Chr2:63555641-63555660 MsG0280010055.01.T01:CDS 40.0%
TTTGTCAACTCAGGTGAACT+TGG + Chr2:63555572-63555591 MsG0280010055.01.T01:CDS 40.0%
! CCAAATTTTCCACATCTCTC+TGG - Chr2:63556421-63556440 None:intergenic 40.0%
! GCCTTTAGGTTACTCTCAAA+TGG + Chr2:63555878-63555897 MsG0280010055.01.T01:CDS 40.0%
! TCATCCTACAGATACCCTTT+TGG + Chr2:63555952-63555971 MsG0280010055.01.T01:CDS 40.0%
!! TCAACCAAAAGGGTATCTGT+AGG - Chr2:63555959-63555978 None:intergenic 40.0%
!! TCAATGTGTTGGTTGTCCAT+TGG + Chr2:63556456-63556475 MsG0280010055.01.T01:CDS 40.0%
!! TTCACTCTAGCTCTTCGAAT+GGG + Chr2:63555689-63555708 MsG0280010055.01.T01:CDS 40.0%
AAACACCATCACGCACATCA+AGG - Chr2:63556342-63556361 None:intergenic 45.0%
CATTCGAAGAGCTAGAGTGA+AGG - Chr2:63555690-63555709 None:intergenic 45.0%
GCCAACACACTTACAATCCT+TGG - Chr2:63556644-63556663 None:intergenic 45.0%
GTTGGTTGTCCATTGGAGAA+TGG + Chr2:63556463-63556482 MsG0280010055.01.T01:CDS 45.0%
TCGAATGGGACTTCAACGTT+CGG + Chr2:63555703-63555722 MsG0280010055.01.T01:CDS 45.0%
TGGGTGTGGGAAGCAAATAA+AGG + Chr2:63555740-63555759 MsG0280010055.01.T01:CDS 45.0%
TTTCACAATGTTGCCTCTGG+TGG + Chr2:63556226-63556245 MsG0280010055.01.T01:CDS 45.0%
! TTCCAATAGGGAATTGGCCT+AGG - Chr2:63556112-63556131 None:intergenic 45.0%
! TTGATGTGCGTGATGGTGTT+TGG + Chr2:63556341-63556360 MsG0280010055.01.T01:CDS 45.0%
!! AGAGCTAGAGTGAAGGCATT+TGG - Chr2:63555683-63555702 None:intergenic 45.0%
!! CTTCACTCTAGCTCTTCGAA+TGG + Chr2:63555688-63555707 MsG0280010055.01.T01:CDS 45.0%
!! CTTGTGTTGGCTAATGCTGA+TGG + Chr2:63555812-63555831 MsG0280010055.01.T01:CDS 45.0%
CACCTAGGCCAATTCCCTAT+TGG + Chr2:63556107-63556126 MsG0280010055.01.T01:CDS 50.0%
TATTTGCTTCCCACACCCAC+CGG - Chr2:63555739-63555758 None:intergenic 50.0%
! AACGTTCGGAGCAGCTTTTC+CGG + Chr2:63555717-63555736 MsG0280010055.01.T01:CDS 50.0%
! TTCGGAGCAGCTTTTCCGGT+GGG + Chr2:63555721-63555740 MsG0280010055.01.T01:CDS 55.0%
! AGCAGCTTTTCCGGTGGGTG+TGG + Chr2:63555726-63555745 MsG0280010055.01.T01:CDS 60.0%
! GCAGCTTTTCCGGTGGGTGT+GGG + Chr2:63555727-63555746 MsG0280010055.01.T01:CDS 60.0%
! GTTCGGAGCAGCTTTTCCGG+TGG + Chr2:63555720-63555739 MsG0280010055.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 63555467 63556774 63555467 ID=MsG0280010055.01;Name=MsG0280010055.01
Chr2 mRNA 63555467 63556774 63555467 ID=MsG0280010055.01.T01;Parent=MsG0280010055.01;Name=MsG0280010055.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|435
Chr2 exon 63555467 63556774 63555467 ID=MsG0280010055.01.T01:exon:10146;Parent=MsG0280010055.01.T01
Chr2 CDS 63555467 63556774 63555467 ID=MsG0280010055.01.T01:cds;Parent=MsG0280010055.01.T01
Gene Sequence

>MsG0280010055.01.T01

ATGTCTTTTGTTCTTCTCCTAAAAACCTCTTTTCTCACATTATTGTTCTTATCATTCTCCACTTTCATTTCTCATGCAATCGTACCACAAAATGAAACCTTCAAATTTGTCAACTCAGGTGAACTTGGACCATTCATAGTAGAATATGGAGGTGATTACAGAATGATAAGCATATTCAATGCTCCATTCCAAGTTGGTTTCTACAACACTACTCCAAATGCCTTCACTCTAGCTCTTCGAATGGGACTTCAACGTTCGGAGCAGCTTTTCCGGTGGGTGTGGGAAGCAAATAAAGGTAATCCAGTTGATGAAAATGCAACTTTTTCATTAGGTGTTGATGGAAATCTTGTGTTGGCTAATGCTGATGGAAGAATTGTTTGGCAAACAAATACTTCGAATAAAGGTGTTGTTGCCTTTAGGTTACTCTCAAATGGTAACATGGTTTTAATTGATACTAAAGGTAAATTTGTTTGGCAAAGTTTTGATCATCCTACAGATACCCTTTTGGTTGATCAATATTTAAAGGCTAATGGACCTTCAAAACTTGTTAGTAGGCTTTCAGAAAAAGAAAATGTTGATGGACCTTATAGTTTGGTTTTTGATCCCAAAGGGTTGACTTTATATTACAAAAGTAAAAATTCACCTAGGCCAATTCCCTATTGGAATTCATCTAATTGGTATTCATTTGATTTTAAACAATTTACATTAGAAAAAGTCACACTCATATCTGATCCATTTGAGATTGGATTGCACTTGTTTTTTCACAATGTTGCCTCTGGTGGTATGAAAATATTTAGTGAGCCGGTAAATAATAGCACTTTAACATATCTAAGGCTAGGAATTGATGGTAACATTAAAATTCACACTTATTTCCTTGATGTGCGTGATGGTGTTTGGCAAGTGATGTACACTCTCTTTGATAGAAATTTTGATGAGAGTGAGTGTCAATTACCAGAGAGATGTGGAAAATTTGGACTTTGTGAGGATAGTCAATGTGTTGGTTGTCCATTGGAGAATGGAACATTTGCTTGGAGCAATAAGTGTAATGCTAAGCTTTTAGGAGAATGCAAAACAAGTGAGTTTCATTACTACAAAATTGAAGGAGTTGAGCATTACATGAGTAAATACACTACTGGTGATAGAGTAAGTGAAGATACTTGTGCAAATAAATGTACCAAGGATTGTAAGTGTGTTGGCTATTTCTACCACAAAGATAACTCAAGGTGTTGGATTGCTTATGATCTTCAAACTCTTACTAGAGTTCAAAATACCACACATGTGGGTTTTATTAAGGTGCCTAATAAGTAA

Protein sequence

>MsG0280010055.01.T01

MSFVLLLKTSFLTLLFLSFSTFISHAIVPQNETFKFVNSGELGPFIVEYGGDYRMISIFNAPFQVGFYNTTPNAFTLALRMGLQRSEQLFRWVWEANKGNPVDENATFSLGVDGNLVLANADGRIVWQTNTSNKGVVAFRLLSNGNMVLIDTKGKFVWQSFDHPTDTLLVDQYLKANGPSKLVSRLSEKENVDGPYSLVFDPKGLTLYYKSKNSPRPIPYWNSSNWYSFDFKQFTLEKVTLISDPFEIGLHLFFHNVASGGMKIFSEPVNNSTLTYLRLGIDGNIKIHTYFLDVRDGVWQVMYTLFDRNFDESECQLPERCGKFGLCEDSQCVGCPLENGTFAWSNKCNAKLLGECKTSEFHYYKIEGVEHYMSKYTTGDRVSEDTCANKCTKDCKCVGYFYHKDNSRCWIAYDLQTLTRVQNTTHVGFIKVPNK*