AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002463.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002463.01.T01 MTR_1g050530 48.309 207 5 3 49 255 122 226 9.12e-47 155
MsG0180002463.01.T01 MTR_1g050530 43.617 94 3 1 49 142 122 165 1.14e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002463.01.T01 AT5G04440 43.662 142 28 2 114 255 166 255 1.07e-27 107
MsG0180002463.01.T01 AT5G04440 62.903 62 23 0 114 175 166 227 3.10e-19 84.3

Find 54 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATTATATTTCATGGATA+TGG 0.261535 1:+38671590 None:intergenic
CATGCGAACTACATCATTTC+AGG 0.271517 1:-38674900 MsG0180002463.01.T01:CDS
ATGGATATGGTTGAGTAAAT+AGG 0.287345 1:+38671603 None:intergenic
TTTATGCTGATTATATTTCA+TGG 0.309142 1:+38671584 None:intergenic
GAACGACAGTTTGAGTTTGA+TGG 0.319507 1:-38673305 MsG0180002463.01.T01:CDS
GCTGATTCAATTGCTTGCTT+TGG 0.335311 1:+38672618 None:intergenic
ACGGTGATTTCAAAATTATA+TGG 0.339178 1:-38672997 MsG0180002463.01.T01:CDS
GTTTAACAATGTTGTTCATA+AGG 0.340417 1:+38674822 None:intergenic
AACAAACCTGTGACATAAAA+CGG 0.350906 1:+38672554 None:intergenic
TTTAACAATGTTGTTCATAA+GGG 0.351084 1:+38674823 None:intergenic
GAGTACTCCCACCTCAATTA+TGG 0.356989 1:+38672756 None:intergenic
GATTATCAAGCCTGGGCCTC+TGG 0.362325 1:-38669423 MsG0180002463.01.T01:CDS
TTTCTTACATTACAGCTTCA+GGG 0.400629 1:-38673349 MsG0180002463.01.T01:intron
ATGTGGTAATGCAGCTATAA+TGG 0.425880 1:-38672842 MsG0180002463.01.T01:intron
TAATCTTGAGTATTTGTTCA+AGG 0.430233 1:+38672583 None:intergenic
CACAGGTTGCACTTGCACTT+TGG 0.431595 1:-38671647 MsG0180002463.01.T01:intron
TGAGGCATTTCCAGAGGCCC+AGG 0.437530 1:+38669413 None:intergenic
AAGCAAGCAATTGAATCAGC+TGG 0.447176 1:-38672615 MsG0180002463.01.T01:CDS
ATGCCTCACAAGTTCTACTA+TGG 0.451849 1:+38674769 None:intergenic
AGTCACTTTCACACGATATC+CGG 0.455952 1:+38672815 None:intergenic
CGTTCTGAGCAGCGACCATA+GGG 0.458805 1:+38673323 None:intergenic
ATGCCTCAAGGCAACCTCTT+GGG 0.464009 1:-38669398 MsG0180002463.01.T01:CDS
TCGTTCTGAGCAGCGACCAT+AGG 0.478298 1:+38673322 None:intergenic
ACAAACCTGTGACATAAAAC+GGG 0.485378 1:+38672555 None:intergenic
AATGCCTCAAGGCAACCTCT+TGG 0.493109 1:-38669399 MsG0180002463.01.T01:CDS
TTGTGAAAGATTATCAAGCC+TGG 0.500950 1:-38669431 MsG0180002463.01.T01:CDS
ATGCAGCTATAATGGTGAAC+CGG 0.501075 1:-38672834 MsG0180002463.01.T01:intron
TCTTGTTACTTATCGAATCT+CGG 0.506629 1:-38673261 MsG0180002463.01.T01:intron
GGTATTGCTTTGAAAGCGAA+AGG 0.511262 1:+38672639 None:intergenic
TCAAGGCAACCTCTTGGGAC+AGG 0.526109 1:-38669393 MsG0180002463.01.T01:CDS
ACAGCTTCAGGGTTCCCCTA+TGG 0.530007 1:-38673338 MsG0180002463.01.T01:intron
GTTGCACTTGCACTTTGGCA+TGG 0.535731 1:-38671642 MsG0180002463.01.T01:CDS
AGTAAATGTGAATGTAGCTA+AGG 0.537212 1:-38673026 MsG0180002463.01.T01:CDS
CCTCTACTTCTTGAGTAACA+TGG 0.554480 1:+38672968 None:intergenic
TTGCCTTGAGGCATTTCCAG+AGG 0.558238 1:+38669407 None:intergenic
AATGTGAATGTAGCTAAGGA+TGG 0.563109 1:-38673022 MsG0180002463.01.T01:CDS
ATGCGAACTACATCATTTCA+GGG 0.563115 1:-38674899 MsG0180002463.01.T01:CDS
AGCAAGCAATTGAATCAGCT+GGG 0.564610 1:-38672614 MsG0180002463.01.T01:CDS
GGGCCTCTGGAAATGCCTCA+AGG 0.565504 1:-38669410 MsG0180002463.01.T01:CDS
CACATCAGACACCATAATTG+AGG 0.567823 1:-38672767 MsG0180002463.01.T01:intron
TGTGAAAGATTATCAAGCCT+GGG 0.569096 1:-38669430 MsG0180002463.01.T01:CDS
CAGATTTCACCTGTCCCAAG+AGG 0.585810 1:+38669384 None:intergenic
CTGAAATGATGTAGTTCGCA+TGG 0.586010 1:+38674901 None:intergenic
CCATGTTACTCAAGAAGTAG+AGG 0.597334 1:-38672968 MsG0180002463.01.T01:intron
CTATGCAGTCATTGTGACCA+TGG 0.598348 1:-38674864 MsG0180002463.01.T01:CDS
TGAAATGATGTAGTTCGCAT+GGG 0.608200 1:+38674902 None:intergenic
AAGTGACTCAGATAAGTCAC+TGG 0.624597 1:-38672800 MsG0180002463.01.T01:CDS
AATGTAGCTAAGGATGGTTA+CGG 0.650316 1:-38673016 MsG0180002463.01.T01:CDS
ATACCTCACAAGTTCTACCA+TGG 0.682880 1:+38674847 None:intergenic
TGGTTGCAATGATCATGTGT+CGG 0.694727 1:+38674789 None:intergenic
TGTCCCAAGAGGTTGCCTTG+AGG 0.701420 1:+38669395 None:intergenic
TGACCATGGTAGAACTTGTG+AGG 0.721040 1:-38674850 MsG0180002463.01.T01:CDS
CTACTTCTTGAGTAACATGG+AGG 0.744113 1:+38672971 None:intergenic
GTTCTGAGCAGCGACCATAG+GGG 0.776434 1:+38673324 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTTTTTTAACTAAAA+AGG - Chr1:38670263-38670282 MsG0180002463.01.T01:intron 10.0%
!!! TGATTTTTTTTAACTAAAAA+GGG - Chr1:38670264-38670283 MsG0180002463.01.T01:intron 10.0%
!!! TTTTAGTTAAAAAAAATCAT+AGG + Chr1:38670263-38670282 None:intergenic 10.0%
!! AAGAAAAAAGAAATAAGAAA+GGG + Chr1:38670919-38670938 None:intergenic 15.0%
!! AATAATTTATTACTAGAGAT+AGG - Chr1:38674187-38674206 MsG0180002463.01.T01:intron 15.0%
!! AATTATCTAAAAGTTATACA+TGG - Chr1:38673317-38673336 MsG0180002463.01.T01:CDS 15.0%
!! ACGATCAATATATTTAATTA+AGG - Chr1:38670174-38670193 MsG0180002463.01.T01:intron 15.0%
!! TAAGAAAAAAGAAATAAGAA+AGG + Chr1:38670920-38670939 None:intergenic 15.0%
!! TCTCTAGTAATAAATTATTA+TGG + Chr1:38674186-38674205 None:intergenic 15.0%
!!! AAAGTACATGATATTTTAAA+TGG + Chr1:38672508-38672527 None:intergenic 15.0%
!!! AAGTACATGATATTTTAAAT+GGG + Chr1:38672507-38672526 None:intergenic 15.0%
!!! GTTATTATACAATTTTTGTA+TGG + Chr1:38673358-38673377 None:intergenic 15.0%
!!! TCAAATTTTTATACATATAC+TGG + Chr1:38672814-38672833 None:intergenic 15.0%
!!! TTTGAAAATTTTATGACAAT+TGG + Chr1:38674246-38674265 None:intergenic 15.0%
!!! TTTTTAATAATAAGTTTCCT+AGG + Chr1:38674309-38674328 None:intergenic 15.0%
!!! TTTTTTCTATATAAAATCCA+AGG + Chr1:38674282-38674301 None:intergenic 15.0%
!! AACCTTAAAATAACATAATC+TGG - Chr1:38673766-38673785 MsG0180002463.01.T01:intron 20.0%
!! AAGAACAGAAAATTTATAGA+AGG - Chr1:38671988-38672007 MsG0180002463.01.T01:intron 20.0%
!! AATTTGTAGTTGAATATATG+AGG - Chr1:38670670-38670689 MsG0180002463.01.T01:intron 20.0%
!! ACCTTAAAATAACATAATCT+GGG - Chr1:38673767-38673786 MsG0180002463.01.T01:intron 20.0%
!! AGAACAGAAAATTTATAGAA+GGG - Chr1:38671989-38672008 MsG0180002463.01.T01:intron 20.0%
!! ATAAAGACTTTCATCAAATT+CGG - Chr1:38672090-38672109 MsG0180002463.01.T01:intron 20.0%
!! ATCAACAAAATTATGTACAT+TGG + Chr1:38673420-38673439 None:intergenic 20.0%
!! CAAAATAAAATCAGAAGAAA+AGG + Chr1:38671563-38671582 None:intergenic 20.0%
!! CTAAAAGACAATGAAATAAA+AGG + Chr1:38674671-38674690 None:intergenic 20.0%
!! CTAATGGTTTAAACTTTAAA+TGG - Chr1:38673078-38673097 MsG0180002463.01.T01:intron 20.0%
!! GATTTAATGATAAGTAAAGT+AGG + Chr1:38670880-38670899 None:intergenic 20.0%
!! TAAATTTGAGTATTTGTTCA+AGG + Chr1:38673897-38673916 None:intergenic 20.0%
!! TATATAGAAAAAATCATCCT+AGG - Chr1:38674289-38674308 MsG0180002463.01.T01:intron 20.0%
!! TTAACATAAGACCAAAAAAA+GGG - Chr1:38672312-38672331 MsG0180002463.01.T01:intron 20.0%
!! TTATATACAGTCCATATAAA+AGG + Chr1:38674036-38674055 None:intergenic 20.0%
!! TTGAACAAATACTCAAATTT+AGG - Chr1:38673896-38673915 MsG0180002463.01.T01:intron 20.0%
!! TTTAACAATGTTGTTCATAA+GGG + Chr1:38669462-38669481 None:intergenic 20.0%
!!! AATTAAGTTTTTCACATTTG+AGG - Chr1:38670776-38670795 MsG0180002463.01.T01:intron 20.0%
!!! AATTTATCATCTTTTGTAGT+TGG + Chr1:38672771-38672790 None:intergenic 20.0%
!!! AGATTATGTTATTTTAAGGT+TGG + Chr1:38673767-38673786 None:intergenic 20.0%
!!! AGTACATGATATTTTAAATG+GGG + Chr1:38672506-38672525 None:intergenic 20.0%
!!! TAACTATCTTACTTTTAAAG+AGG + Chr1:38672597-38672616 None:intergenic 20.0%
!!! TATTATGGATTTCACATTTT+AGG + Chr1:38674171-38674190 None:intergenic 20.0%
!!! TCTATAAATTTTCTGTTCTT+TGG + Chr1:38671988-38672007 None:intergenic 20.0%
!!! TGAAGTTTTGTACTAATTTT+AGG - Chr1:38674776-38674795 MsG0180002463.01.T01:intron 20.0%
!!! TTTATGCTGATTATATTTCA+TGG + Chr1:38672701-38672720 None:intergenic 20.0%
! AAACAGGATTACTCTATAAA+TGG - Chr1:38673383-38673402 MsG0180002463.01.T01:intron 25.0%
! AAACATTGCAACATGTAATA+TGG + Chr1:38674343-38674362 None:intergenic 25.0%
! AAGAAAAAGATAGTCCTATA+GGG + Chr1:38673038-38673057 None:intergenic 25.0%
! AAGTAATGACTTCATAGATA+TGG + Chr1:38673127-38673146 None:intergenic 25.0%
! AATCTCTATGCATGAATATA+GGG + Chr1:38671871-38671890 None:intergenic 25.0%
! ACGGTGATTTCAAAATTATA+TGG - Chr1:38671285-38671304 MsG0180002463.01.T01:intron 25.0%
! AGTTTAAAAGTCACATTTCT+TGG - Chr1:38674000-38674019 MsG0180002463.01.T01:intron 25.0%
! ATAAATGTGTTTATGTGTCA+AGG - Chr1:38672716-38672735 MsG0180002463.01.T01:intron 25.0%
! CAAATACTCTATAATATCCT+TGG - Chr1:38674262-38674281 MsG0180002463.01.T01:intron 25.0%
! CATCAACATAATTTATAGTG+AGG + Chr1:38673526-38673545 None:intergenic 25.0%
! CTGATTATATTTCATGGATA+TGG + Chr1:38672695-38672714 None:intergenic 25.0%
! CTGTTTATTAGGTAAATGTA+TGG - Chr1:38674514-38674533 MsG0180002463.01.T01:intron 25.0%
! CTTAACATAAGACCAAAAAA+AGG - Chr1:38672311-38672330 MsG0180002463.01.T01:intron 25.0%
! GTCATTTCAATACTTTAATG+TGG - Chr1:38671423-38671442 MsG0180002463.01.T01:intron 25.0%
! GTTTAACAATGTTGTTCATA+AGG + Chr1:38669463-38669482 None:intergenic 25.0%
! TAATCTCTATGCATGAATAT+AGG + Chr1:38671872-38671891 None:intergenic 25.0%
! TAATCTTGAGTATTTGTTCA+AGG + Chr1:38671702-38671721 None:intergenic 25.0%
! TAGAGATTAACATGAGTAAA+TGG - Chr1:38671883-38671902 MsG0180002463.01.T01:intron 25.0%
! TGAATGATACTACTTACTTA+GGG + Chr1:38670598-38670617 None:intergenic 25.0%
! TGTACTACATTCTAATCTAA+TGG - Chr1:38673062-38673081 MsG0180002463.01.T01:intron 25.0%
! TGTATTGGGTCTAATTAATT+AGG + Chr1:38669760-38669779 None:intergenic 25.0%
! TTGAATGATACTACTTACTT+AGG + Chr1:38670599-38670618 None:intergenic 25.0%
! TTTAACTAAAAAGGGTCAAA+GGG - Chr1:38670272-38670291 MsG0180002463.01.T01:intron 25.0%
! TTTATGTAGGTAAATAGCTT+TGG + Chr1:38673457-38673476 None:intergenic 25.0%
!! ATTTTTGTATGAAAGTTGTG+AGG - Chr1:38671796-38671815 MsG0180002463.01.T01:intron 25.0%
!! CACAGATACGTATATAATTT+TGG - Chr1:38673201-38673220 MsG0180002463.01.T01:intron 25.0%
!! CTTTGATTAATTGTGTGTTT+TGG + Chr1:38672453-38672472 None:intergenic 25.0%
!! GGTTCTTATTTCTCTAAATT+TGG + Chr1:38671850-38671869 None:intergenic 25.0%
!! TTTTTGTATGAAAGTTGTGA+GGG - Chr1:38671797-38671816 MsG0180002463.01.T01:intron 25.0%
!!! AATTTTGGTTTGTCAAAACA+TGG - Chr1:38670301-38670320 MsG0180002463.01.T01:intron 25.0%
!!! CTTTTTTTGGTCTTATGTTA+AGG + Chr1:38672313-38672332 None:intergenic 25.0%
!!! TAAGTTTTATTGTTCTTTCC+AGG + Chr1:38673625-38673644 None:intergenic 25.0%
!!! TCCCAGATTATGTTATTTTA+AGG + Chr1:38673771-38673790 None:intergenic 25.0%
!!! TTTTAACTAAAAAGGGTCAA+AGG - Chr1:38670271-38670290 MsG0180002463.01.T01:intron 25.0%
AAACAGATATCTCAAGGATT+AGG + Chr1:38672479-38672498 None:intergenic 30.0%
AAAGAGTGATGACATTGAAT+GGG + Chr1:38669683-38669702 None:intergenic 30.0%
AAAGAGTTCCCTTTATATAG+AGG + Chr1:38669990-38670009 None:intergenic 30.0%
AAAGGGTGAAAAAGAAATAC+GGG + Chr1:38670902-38670921 None:intergenic 30.0%
AAATTTGTAACAAACTGTCC+AGG - Chr1:38674428-38674447 MsG0180002463.01.T01:intron 30.0%
AACAAACCTGTGACATAAAA+CGG + Chr1:38671731-38671750 None:intergenic 30.0%
AACAAATTACAAAGGGATAG+AGG - Chr1:38672274-38672293 MsG0180002463.01.T01:intron 30.0%
AAGGGAAAAAGGAAATTTGT+AGG - Chr1:38671362-38671381 MsG0180002463.01.T01:intron 30.0%
AAGTCAGTATGAGATTAGAA+GGG + Chr1:38670050-38670069 None:intergenic 30.0%
AGAGATTAGAATCTACCTTT+GGG + Chr1:38670019-38670038 None:intergenic 30.0%
AGTAAATGTGAATGTAGCTA+AGG - Chr1:38671256-38671275 MsG0180002463.01.T01:intron 30.0%
AGTACAAAGGAACAAATGAT+TGG - Chr1:38671943-38671962 MsG0180002463.01.T01:intron 30.0%
ATATTGCCAAATGCGAAATT+TGG + Chr1:38669791-38669810 None:intergenic 30.0%
ATGGATATGGTTGAGTAAAT+AGG + Chr1:38672682-38672701 None:intergenic 30.0%
GAAAGGGTGAAAAAGAAATA+CGG + Chr1:38670903-38670922 None:intergenic 30.0%
GAAGAAAAAGATAGTCCTAT+AGG + Chr1:38673039-38673058 None:intergenic 30.0%
GAATGATACTACTTACTTAG+GGG + Chr1:38670597-38670616 None:intergenic 30.0%
GACAATAAAGACTGTCATAT+TGG + Chr1:38673105-38673124 None:intergenic 30.0%
GACGAAGAACAAATTACAAA+GGG - Chr1:38672267-38672286 MsG0180002463.01.T01:intron 30.0%
GACTGTATATAAATTGCGTA+GGG - Chr1:38674044-38674063 MsG0180002463.01.T01:intron 30.0%
GTACAAAGGAACAAATGATT+GGG - Chr1:38671944-38671963 MsG0180002463.01.T01:intron 30.0%
GTTAGTTGTAACAAAGAGAT+TGG + Chr1:38672196-38672215 None:intergenic 30.0%
TAAAGAGTGATGACATTGAA+TGG + Chr1:38669684-38669703 None:intergenic 30.0%
TAATCCTTGAGATATCTGTT+TGG - Chr1:38672478-38672497 MsG0180002463.01.T01:intron 30.0%
TACAAAAAGGGTAGATGAAA+TGG - Chr1:38671199-38671218 MsG0180002463.01.T01:intron 30.0%
TACAACTAACTTTCATGATG+TGG - Chr1:38672206-38672225 MsG0180002463.01.T01:intron 30.0%
TAGTACAATGATGAGTACAA+AGG - Chr1:38671930-38671949 MsG0180002463.01.T01:intron 30.0%
TATTGCCAAATGCGAAATTT+GGG + Chr1:38669790-38669809 None:intergenic 30.0%
TGACGAAGAACAAATTACAA+AGG - Chr1:38672266-38672285 MsG0180002463.01.T01:intron 30.0%
TGCAACATGTAATATGGTAT+TGG + Chr1:38674337-38674356 None:intergenic 30.0%
TGGTATATAATAGCAGTGTA+AGG + Chr1:38672132-38672151 None:intergenic 30.0%
TTATTACTAGAGATAGGTGT+TGG - Chr1:38674193-38674212 MsG0180002463.01.T01:intron 30.0%
TTGAATGTTTACACACATGA+GGG - Chr1:38672830-38672849 MsG0180002463.01.T01:CDS 30.0%
TTTCTTACATTACAGCTTCA+GGG - Chr1:38670933-38670952 MsG0180002463.01.T01:intron 30.0%
TTTGAATGTTTACACACATG+AGG - Chr1:38672829-38672848 MsG0180002463.01.T01:CDS 30.0%
! AATTTGGGATGTGTTTGTAT+TGG + Chr1:38669775-38669794 None:intergenic 30.0%
! ATTTGGGATGTGTTTGTATT+GGG + Chr1:38669774-38669793 None:intergenic 30.0%
! GAGAAATCAGTCCTTTTATA+TGG - Chr1:38674022-38674041 MsG0180002463.01.T01:intron 30.0%
! GATGACTTGTATTATAAAGC+TGG - Chr1:38671065-38671084 MsG0180002463.01.T01:intron 30.0%
! GTTGGAGTAAAAGTTGATTT+GGG + Chr1:38672570-38672589 None:intergenic 30.0%
! TCTTGTTACTTATCGAATCT+CGG - Chr1:38671021-38671040 MsG0180002463.01.T01:intron 30.0%
! TGTTGGAGTAAAAGTTGATT+TGG + Chr1:38672571-38672590 None:intergenic 30.0%
! TTAAACCTGAAAGTTTTGCA+GGG - Chr1:38673696-38673715 MsG0180002463.01.T01:intron 30.0%
! TTTGTAGTTGGCAATTTTTC+TGG + Chr1:38672759-38672778 None:intergenic 30.0%
! TTTTCTTACATTACAGCTTC+AGG - Chr1:38670932-38670951 MsG0180002463.01.T01:intron 30.0%
!! ATTTGATTCATGCTACTTTC+AGG - Chr1:38671397-38671416 MsG0180002463.01.T01:intron 30.0%
!! GTCAAAGGGAGTATAAATTT+TGG - Chr1:38670286-38670305 MsG0180002463.01.T01:intron 30.0%
!! TACTTTTAAAGAGGTCTTGT+TGG + Chr1:38672588-38672607 None:intergenic 30.0%
!!! AAACATGGTTTGGTTTGTTT+TGG - Chr1:38670316-38670335 MsG0180002463.01.T01:intron 30.0%
!!! GTGTTTTGGTCTTATGTTAA+GGG + Chr1:38672439-38672458 None:intergenic 30.0%
!!! TCTCACTTTTGGCTTATATT+TGG + Chr1:38672534-38672553 None:intergenic 30.0%
!!! TGTGTTTTGGTCTTATGTTA+AGG + Chr1:38672440-38672459 None:intergenic 30.0%
!!! TGTTTTGGTCTTATGTTAAG+GGG + Chr1:38672438-38672457 None:intergenic 30.0%
!!! TTTTTGGTCTTATGTTAAGG+AGG + Chr1:38672310-38672329 None:intergenic 30.0%
AAACACCCACCTCTATATAA+AGG - Chr1:38669978-38669997 MsG0180002463.01.T01:intron 35.0%
AAAGTTGAACAACAACCCAA+TGG - Chr1:38670819-38670838 MsG0180002463.01.T01:intron 35.0%
AACACCCACCTCTATATAAA+GGG - Chr1:38669979-38669998 MsG0180002463.01.T01:intron 35.0%
AACAGTAACGATCATCATCA+TGG - Chr1:38669873-38669892 MsG0180002463.01.T01:intron 35.0%
AATGTAGCTAAGGATGGTTA+CGG - Chr1:38671266-38671285 MsG0180002463.01.T01:intron 35.0%
AATGTGAATGTAGCTAAGGA+TGG - Chr1:38671260-38671279 MsG0180002463.01.T01:intron 35.0%
ACAAACCTGTGACATAAAAC+GGG + Chr1:38671730-38671749 None:intergenic 35.0%
ACAAAGAGATTGGAATCACA+TGG + Chr1:38672186-38672205 None:intergenic 35.0%
ACTAGTAGAAAGATTCAGCT+GGG - Chr1:38673863-38673882 MsG0180002463.01.T01:intron 35.0%
ACTCTTATCTAGATCATGAG+AGG - Chr1:38674397-38674416 MsG0180002463.01.T01:intron 35.0%
AGCAAGTCAATATTCAGTGT+TGG - Chr1:38670698-38670717 MsG0180002463.01.T01:intron 35.0%
AGTCAGTATGAGATTAGAAG+GGG + Chr1:38670049-38670068 None:intergenic 35.0%
AGTTCCCTTTATATAGAGGT+GGG + Chr1:38669986-38670005 None:intergenic 35.0%
ATGCGAACTACATCATTTCA+GGG - Chr1:38669383-38669402 MsG0180002463.01.T01:CDS 35.0%
CAAGTCAGTATGAGATTAGA+AGG + Chr1:38670051-38670070 None:intergenic 35.0%
CTATTGTAGAACCATAACTC+TGG + Chr1:38674743-38674762 None:intergenic 35.0%
CTCATCATTGTACTAGTGAA+AGG + Chr1:38671925-38671944 None:intergenic 35.0%
GAATATGTGAGGGTTAATAG+TGG - Chr1:38674471-38674490 MsG0180002463.01.T01:intron 35.0%
GAGAGATTAGAATCTACCTT+TGG + Chr1:38670020-38670039 None:intergenic 35.0%
GAGATTAGAATCTACCTTTG+GGG + Chr1:38670018-38670037 None:intergenic 35.0%
GATTGAAACGAAATCAACCT+TGG + Chr1:38673182-38673201 None:intergenic 35.0%
GCACATTCAACAAACCTAAA+CGG - Chr1:38669616-38669635 MsG0180002463.01.T01:intron 35.0%
GGACTGTATATAAATTGCGT+AGG - Chr1:38674043-38674062 MsG0180002463.01.T01:intron 35.0%
GTGAAATGGTTGAACAAGAA+TGG + Chr1:38670455-38670474 None:intergenic 35.0%
TATCTAGATCATGAGAGGAT+GGG - Chr1:38674402-38674421 MsG0180002463.01.T01:intron 35.0%
TCAACTTTGACAAGCAAAAC+AGG + Chr1:38670807-38670826 None:intergenic 35.0%
TCAAGGAAAACATGCAGTAA+GGG + Chr1:38671142-38671161 None:intergenic 35.0%
TGGAACATAAATACTGACCA+AGG - Chr1:38673162-38673181 MsG0180002463.01.T01:intron 35.0%
TGTGAAAGATTATCAAGCCT+GGG - Chr1:38674852-38674871 MsG0180002463.01.T01:CDS 35.0%
TTATCTAGATCATGAGAGGA+TGG - Chr1:38674401-38674420 MsG0180002463.01.T01:intron 35.0%
TTGGTCAGTATTTATGTTCC+AGG + Chr1:38673163-38673182 None:intergenic 35.0%
TTGTGAAAGATTATCAAGCC+TGG - Chr1:38674851-38674870 MsG0180002463.01.T01:CDS 35.0%
TTTAGTGTATAAAGAGGGCA+AGG + Chr1:38672411-38672430 None:intergenic 35.0%
TTTATCAAGAGCAACGACTT+GGG - Chr1:38669700-38669719 MsG0180002463.01.T01:intron 35.0%
! AAGGTGAAGTCGATTTATGT+AGG + Chr1:38673470-38673489 None:intergenic 35.0%
! AAGTCTTTATTTCCTCCCTT+TGG + Chr1:38672080-38672099 None:intergenic 35.0%
! AATAGTGGAAGGAATTGAGA+AGG - Chr1:38674486-38674505 MsG0180002463.01.T01:intron 35.0%
! ATAGTGGAAGGAATTGAGAA+GGG - Chr1:38674487-38674506 MsG0180002463.01.T01:intron 35.0%
! ATGTGGTAATGCAGCTATAA+TGG - Chr1:38671440-38671459 MsG0180002463.01.T01:intron 35.0%
! CATGTTTTCCTTGACTGTTA+CGG - Chr1:38671148-38671167 MsG0180002463.01.T01:intron 35.0%
! CTTTTTCCCTTTCTCAGAAA+GGG + Chr1:38671353-38671372 None:intergenic 35.0%
! GCTTCAATTGATAACTGGAA+CGG + Chr1:38670106-38670125 None:intergenic 35.0%
! GGAATGCTTCAATTGATAAC+TGG + Chr1:38670111-38670130 None:intergenic 35.0%
! GGAGCTTTAGTGTATAAAGA+GGG + Chr1:38672416-38672435 None:intergenic 35.0%
! GGCAATTTTTCTGGATGTTT+GGG + Chr1:38672750-38672769 None:intergenic 35.0%
! GTTAAACCTGAAAGTTTTGC+AGG - Chr1:38673695-38673714 MsG0180002463.01.T01:intron 35.0%
! TGGCAATTTTTCTGGATGTT+TGG + Chr1:38672751-38672770 None:intergenic 35.0%
! TGGTTTGTCAAAACATGGTT+TGG - Chr1:38670306-38670325 MsG0180002463.01.T01:intron 35.0%
! TGTCAGCTTTTACACAAAAC+TGG - Chr1:38673943-38673962 MsG0180002463.01.T01:intron 35.0%
! TTGTGAGGGTTTGGATTTTT+GGG - Chr1:38671811-38671830 MsG0180002463.01.T01:intron 35.0%
!! AACACTGAATATTGACTTGC+TGG + Chr1:38670699-38670718 None:intergenic 35.0%
!! ACTTTCAGGTTTAACTGTCA+TGG + Chr1:38673690-38673709 None:intergenic 35.0%
!! CTGGACTAACTAAAGCATTT+TGG - Chr1:38669734-38669753 MsG0180002463.01.T01:intron 35.0%
!!! ATTTTAGCTGCAATCGTGAT+AGG - Chr1:38673268-38673287 MsG0180002463.01.T01:CDS 35.0%
!!! GTTTTGGTCTTATGTTAAGG+GGG + Chr1:38672437-38672456 None:intergenic 35.0%
!!! TGGTTTGGTTTGTTTTGGAA+CGG - Chr1:38670321-38670340 MsG0180002463.01.T01:intron 35.0%
AACTGGAATGAACGAAAGAG+TGG - Chr1:38673960-38673979 MsG0180002463.01.T01:intron 40.0%
AAGCAAGCAATTGAATCAGC+TGG - Chr1:38671667-38671686 MsG0180002463.01.T01:intron 40.0%
AAGTGACTCAGATAAGTCAC+TGG - Chr1:38671482-38671501 MsG0180002463.01.T01:intron 40.0%
ACTACCGATGCAGTTATGTA+CGG + Chr1:38670138-38670157 None:intergenic 40.0%
AGAAGGGTAGGCTGTTTATT+AGG - Chr1:38674503-38674522 MsG0180002463.01.T01:intron 40.0%
AGAGATGCTTCATAGAAGCT+AGG + Chr1:38673811-38673830 None:intergenic 40.0%
AGATAGGATACGTTGTCTGA+AGG + Chr1:38673489-38673508 None:intergenic 40.0%
AGATCAGACAACTCGTATCA+TGG + Chr1:38671101-38671120 None:intergenic 40.0%
AGCAAGCAATTGAATCAGCT+GGG - Chr1:38671668-38671687 MsG0180002463.01.T01:intron 40.0%
AGCAGTGTAAGGAATGAGAA+AGG + Chr1:38672121-38672140 None:intergenic 40.0%
AGCCAAGACAAAACAAGAGA+AGG - Chr1:38670394-38670413 MsG0180002463.01.T01:intron 40.0%
AGCTTAATGCAACAGCCATT+GGG + Chr1:38670837-38670856 None:intergenic 40.0%
AGTAAGCATGGGAATATGTG+AGG - Chr1:38674460-38674479 MsG0180002463.01.T01:intron 40.0%
ATACCTCACAAGTTCTACCA+TGG + Chr1:38669438-38669457 None:intergenic 40.0%
ATCAGACACCATAATTGAGG+TGG - Chr1:38671518-38671537 MsG0180002463.01.T01:intron 40.0%
ATCGAATCTCGGTCATTAGT+TGG - Chr1:38671032-38671051 MsG0180002463.01.T01:intron 40.0%
ATCTAGATCATGAGAGGATG+GGG - Chr1:38674403-38674422 MsG0180002463.01.T01:intron 40.0%
ATGCAGCTATAATGGTGAAC+CGG - Chr1:38671448-38671467 MsG0180002463.01.T01:intron 40.0%
ATGCCTCACAAGTTCTACTA+TGG + Chr1:38669516-38669535 None:intergenic 40.0%
ATTGGCATTATCGCAGATGA+TGG + Chr1:38674228-38674247 None:intergenic 40.0%
CAACCATAGTAGAACTTGTG+AGG - Chr1:38669510-38669529 MsG0180002463.01.T01:intron 40.0%
CACATCAGACACCATAATTG+AGG - Chr1:38671515-38671534 MsG0180002463.01.T01:intron 40.0%
CACATCCCAAATTTCGCATT+TGG - Chr1:38669782-38669801 MsG0180002463.01.T01:intron 40.0%
CAGATATCTCAAGGATTAGG+TGG + Chr1:38672476-38672495 None:intergenic 40.0%
CATTAAGCTCTTATCCTGCA+AGG - Chr1:38670848-38670867 MsG0180002463.01.T01:intron 40.0%
CATTCAACAAACCTAAACGG+AGG - Chr1:38669619-38669638 MsG0180002463.01.T01:intron 40.0%
CCATGTTACTCAAGAAGTAG+AGG - Chr1:38671314-38671333 MsG0180002463.01.T01:intron 40.0%
CCTCTACTTCTTGAGTAACA+TGG + Chr1:38671317-38671336 None:intergenic 40.0%
CTACTTCTTGAGTAACATGG+AGG + Chr1:38671314-38671333 None:intergenic 40.0%
CTTTATCAAGAGCAACGACT+TGG - Chr1:38669699-38669718 MsG0180002463.01.T01:intron 40.0%
GAACAGAAACAGACTCCTTA+CGG + Chr1:38670560-38670579 None:intergenic 40.0%
GACTAGTAGAAAGATTCAGC+TGG - Chr1:38673862-38673881 MsG0180002463.01.T01:intron 40.0%
GAGTTCCCTTTATATAGAGG+TGG + Chr1:38669987-38670006 None:intergenic 40.0%
GATATTGCATCTGCTACTCA+TGG + Chr1:38673580-38673599 None:intergenic 40.0%
GATCTTTGTACAAGCCTAAG+AGG - Chr1:38672033-38672052 MsG0180002463.01.T01:intron 40.0%
GCAGTGTAAGGAATGAGAAA+GGG + Chr1:38672120-38672139 None:intergenic 40.0%
GGTAAATGTATGGAGCCATT+TGG - Chr1:38674524-38674543 MsG0180002463.01.T01:intron 40.0%
GTAAGCATGGGAATATGTGA+GGG - Chr1:38674461-38674480 MsG0180002463.01.T01:intron 40.0%
GTAGACTCGCGATACAAAAA+GGG - Chr1:38671187-38671206 MsG0180002463.01.T01:intron 40.0%
GTATGAAAGTTGTGAGGGTT+TGG - Chr1:38671802-38671821 MsG0180002463.01.T01:intron 40.0%
GTCAAGGAAAACATGCAGTA+AGG + Chr1:38671143-38671162 None:intergenic 40.0%
TACTTGTCTGACTGATATCC+TGG - Chr1:38673142-38673161 MsG0180002463.01.T01:intron 40.0%
TATTCATGTCATCCTCTGGA+AGG - Chr1:38673652-38673671 MsG0180002463.01.T01:intron 40.0%
TCAGACACCATAATTGAGGT+GGG - Chr1:38671519-38671538 MsG0180002463.01.T01:intron 40.0%
TCATTCCAAACAGTGCCAAA+GGG - Chr1:38672062-38672081 MsG0180002463.01.T01:intron 40.0%
TCGTTACTGTTCGTTTGAAC+TGG + Chr1:38669864-38669883 None:intergenic 40.0%
TGCATTGCTATGTCGAATTC+AGG - Chr1:38671606-38671625 MsG0180002463.01.T01:CDS 40.0%
TGGAATGACTTCTTCCTCTT+AGG + Chr1:38672050-38672069 None:intergenic 40.0%
TGGAGATAATATCCTTCCAG+AGG + Chr1:38673667-38673686 None:intergenic 40.0%
TGGATAGGGATATGATGACT+TGG + Chr1:38673560-38673579 None:intergenic 40.0%
TGGTTGCAATGATCATGTGT+CGG + Chr1:38669496-38669515 None:intergenic 40.0%
TGTAGACTCGCGATACAAAA+AGG - Chr1:38671186-38671205 MsG0180002463.01.T01:intron 40.0%
TTATCAAGAGCAACGACTTG+GGG - Chr1:38669701-38669720 MsG0180002463.01.T01:intron 40.0%
TTTGTAACAAACTGTCCAGG+TGG - Chr1:38674431-38674450 MsG0180002463.01.T01:intron 40.0%
! AAGACTAAGCGTCTCACTTT+TGG + Chr1:38672545-38672564 None:intergenic 40.0%
! AGTCACTTTCACACGATATC+CGG + Chr1:38671470-38671489 None:intergenic 40.0%
! ATACTTGCTGACTACAGTAG+CGG - Chr1:38674714-38674733 MsG0180002463.01.T01:intron 40.0%
! ATGTGAGGGTTAATAGTGGA+AGG - Chr1:38674475-38674494 MsG0180002463.01.T01:intron 40.0%
! CCTTTCTGAGAAAGGGAAAA+AGG - Chr1:38671351-38671370 MsG0180002463.01.T01:intron 40.0%
! CCTTTTTCCCTTTCTCAGAA+AGG + Chr1:38671354-38671373 None:intergenic 40.0%
! GAACGACAGTTTGAGTTTGA+TGG - Chr1:38670977-38670996 MsG0180002463.01.T01:intron 40.0%
! GCTGATTCAATTGCTTGCTT+TGG + Chr1:38671667-38671686 None:intergenic 40.0%
! GGGAGCTTTAGTGTATAAAG+AGG + Chr1:38672417-38672436 None:intergenic 40.0%
! GTTGTGAGGGTTTGGATTTT+TGG - Chr1:38671810-38671829 MsG0180002463.01.T01:intron 40.0%
! TCAATGGTAAGAGCATGTGA+TGG + Chr1:38669580-38669599 None:intergenic 40.0%
! TCAATTGATAACTGGAACGG+CGG + Chr1:38670103-38670122 None:intergenic 40.0%
! TGTATCGCGAGTCTACATTT+TGG + Chr1:38671183-38671202 None:intergenic 40.0%
! TTCAGGTTTAACTGTCATGG+TGG + Chr1:38673687-38673706 None:intergenic 40.0%
!! GAGTTGATGACAACGTGAAA+TGG + Chr1:38670469-38670488 None:intergenic 40.0%
!! GGACATGATGACTTTGAGAT+AGG + Chr1:38673505-38673524 None:intergenic 40.0%
!! GGTATTGCTTTGAAAGCGAA+AGG + Chr1:38671646-38671665 None:intergenic 40.0%
!! TTACTAGAGATAGGTGTTGG+TGG - Chr1:38674196-38674215 MsG0180002463.01.T01:intron 40.0%
!! TTAGGTTTGTTGAATGTGCG+AGG + Chr1:38669615-38669634 None:intergenic 40.0%
!!! GACCTTCTCTTGTTTTGTCT+TGG + Chr1:38670399-38670418 None:intergenic 40.0%
!!! GGTTGGCAGTGTTTTGTTTA+AGG + Chr1:38673750-38673769 None:intergenic 40.0%
!!! TGTTTTGTCTTGGCTTGTGT+GGG + Chr1:38670389-38670408 None:intergenic 40.0%
!!! TTGGTTTGTTTTGGAACGGA+TGG - Chr1:38670325-38670344 MsG0180002463.01.T01:intron 40.0%
!!! TTGTTTTGTCTTGGCTTGTG+TGG + Chr1:38670390-38670409 None:intergenic 40.0%
AAAGTAGGTACCTACCTTGC+AGG + Chr1:38670865-38670884 None:intergenic 45.0%
AAGCTCTTATCCTGCAAGGT+AGG - Chr1:38670852-38670871 MsG0180002463.01.T01:intron 45.0%
AAGGATTGAACGTGTGAGTG+AGG - Chr1:38670728-38670747 MsG0180002463.01.T01:intron 45.0%
AATTGGGATGGCTTCGTCAT+TGG - Chr1:38670423-38670442 MsG0180002463.01.T01:intron 45.0%
ACAAGAGAAGGTCGAGGAAT+TGG - Chr1:38670406-38670425 MsG0180002463.01.T01:intron 45.0%
ACCACCGTACATAACTGCAT+CGG - Chr1:38670131-38670150 MsG0180002463.01.T01:intron 45.0%
ACTAAAGCTCTCACATACGC+AGG - Chr1:38672346-38672365 MsG0180002463.01.T01:intron 45.0%
ACTACTTACTTAGGGGACGT+TGG + Chr1:38670590-38670609 None:intergenic 45.0%
AGAGGTGATAACCTCCGTTT+AGG + Chr1:38669633-38669652 None:intergenic 45.0%
AGTGATGACATTGAATGGGC+GGG + Chr1:38669679-38669698 None:intergenic 45.0%
ATGTATGGAGCCATTTGGCT+AGG - Chr1:38674529-38674548 MsG0180002463.01.T01:intron 45.0%
CAACTGGCATTCTACCCTAT+AGG - Chr1:38673021-38673040 MsG0180002463.01.T01:CDS 45.0%
CAAGAGAAGGTCGAGGAATT+GGG - Chr1:38670407-38670426 MsG0180002463.01.T01:intron 45.0%
CAGTAAGGGATCTCGATAGT+TGG + Chr1:38671128-38671147 None:intergenic 45.0%
CGTAGATTCCGTAACAGTCA+AGG + Chr1:38671159-38671178 None:intergenic 45.0%
CTAAAGCTCTCACATACGCA+GGG - Chr1:38672347-38672366 MsG0180002463.01.T01:intron 45.0%
CTATGCAGTCATTGTGACCA+TGG - Chr1:38669418-38669437 MsG0180002463.01.T01:CDS 45.0%
GACAAAACAAGAGAAGGTCG+AGG - Chr1:38670400-38670419 MsG0180002463.01.T01:intron 45.0%
GAGCTTAATGCAACAGCCAT+TGG + Chr1:38670838-38670857 None:intergenic 45.0%
GAGGAACATGCTTGTCTCAA+TGG + Chr1:38669596-38669615 None:intergenic 45.0%
GAGTACTCCCACCTCAATTA+TGG + Chr1:38671529-38671548 None:intergenic 45.0%
GAGTGATGACATTGAATGGG+CGG + Chr1:38669680-38669699 None:intergenic 45.0%
GATACAGATTCTCATCGTCC+TGG - Chr1:38673604-38673623 MsG0180002463.01.T01:intron 45.0%
GCATCCCTTTGCGAACTATA+CGG - Chr1:38669532-38669551 MsG0180002463.01.T01:intron 45.0%
GCATCTGCTACTCATGGATA+GGG + Chr1:38673574-38673593 None:intergenic 45.0%
GCGTACAATACACCAATGGT+GGG + Chr1:38672386-38672405 None:intergenic 45.0%
GGAACCGTATAGTTCGCAAA+GGG + Chr1:38669539-38669558 None:intergenic 45.0%
GGTGCCAAACAGATATCTCA+AGG + Chr1:38672485-38672504 None:intergenic 45.0%
GGTTGCGTACAATACACCAA+TGG + Chr1:38672390-38672409 None:intergenic 45.0%
GTCATTCCAAACAGTGCCAA+AGG - Chr1:38672061-38672080 MsG0180002463.01.T01:intron 45.0%
TAACAAACTGTCCAGGTGGA+GGG - Chr1:38674435-38674454 MsG0180002463.01.T01:intron 45.0%
TACTGTGTGCGTCACTAAGA+GGG + Chr1:38674566-38674585 None:intergenic 45.0%
TAGGGTTGAGATCAAACGCT+GGG - Chr1:38674062-38674081 MsG0180002463.01.T01:intron 45.0%
TGACCATGGTAGAACTTGTG+AGG - Chr1:38669432-38669451 MsG0180002463.01.T01:CDS 45.0%
TGCATCTGCTACTCATGGAT+AGG + Chr1:38673575-38673594 None:intergenic 45.0%
TGCGTACAATACACCAATGG+TGG + Chr1:38672387-38672406 None:intergenic 45.0%
TGGAACCGTATAGTTCGCAA+AGG + Chr1:38669540-38669559 None:intergenic 45.0%
TGGAAGGAATTGAGAAGGGT+AGG - Chr1:38674491-38674510 MsG0180002463.01.T01:intron 45.0%
TGTATGGAGCCATTTGGCTA+GGG - Chr1:38674530-38674549 MsG0180002463.01.T01:intron 45.0%
TTGCTGAAGCAAGAAGTGGA+AGG + Chr1:38670500-38670519 None:intergenic 45.0%
TTTACACACATGAGGGTCTG+TGG - Chr1:38672837-38672856 MsG0180002463.01.T01:intron 45.0%
! AATTGATAACTGGAACGGCG+GGG + Chr1:38670101-38670120 None:intergenic 45.0%
! ACCTGAAAGTTTTGCAGGGA+AGG - Chr1:38673700-38673719 MsG0180002463.01.T01:intron 45.0%
! ATTCAGTGTTGGACGCTGAA+AGG - Chr1:38670709-38670728 MsG0180002463.01.T01:intron 45.0%
! CAATTGATAACTGGAACGGC+GGG + Chr1:38670102-38670121 None:intergenic 45.0%
! CCTGAAAGTTTTGCAGGGAA+GGG - Chr1:38673701-38673720 MsG0180002463.01.T01:intron 45.0%
! CTCGTTCCCTTTCTGAGAAA+GGG - Chr1:38671344-38671363 MsG0180002463.01.T01:intron 45.0%
! GAACTCTTTGTTGTCCCCAA+AGG - Chr1:38670001-38670020 MsG0180002463.01.T01:intron 45.0%
! GTGCTATTCATGTCATCCTC+TGG - Chr1:38673648-38673667 MsG0180002463.01.T01:intron 45.0%
! TATCAAGAGCAACGACTTGG+GGG - Chr1:38669702-38669721 MsG0180002463.01.T01:intron 45.0%
! TCGGTAGTCACTTTCTGATC+AGG - Chr1:38670150-38670169 MsG0180002463.01.T01:intron 45.0%
! TCTCGTTCCCTTTCTGAGAA+AGG - Chr1:38671343-38671362 MsG0180002463.01.T01:intron 45.0%
! TGCTTCCCGTTTTATGTCAC+AGG - Chr1:38671722-38671741 MsG0180002463.01.T01:intron 45.0%
! TGTTCGGTAAATCACCGGTT+AGG + Chr1:38672989-38673008 None:intergenic 45.0%
!!! GTTTGTTTTGGAACGGATGG+TGG - Chr1:38670328-38670347 MsG0180002463.01.T01:intron 45.0%
AATGCCTCAAGGCAACCTCT+TGG - Chr1:38674883-38674902 MsG0180002463.01.T01:CDS 50.0%
ACCGATGCAGTTATGTACGG+TGG + Chr1:38670135-38670154 None:intergenic 50.0%
AGAAGGTCGAGGAATTGGGA+TGG - Chr1:38670411-38670430 MsG0180002463.01.T01:intron 50.0%
AGACCAAAAAAAGGGCAGCC+TGG - Chr1:38672320-38672339 MsG0180002463.01.T01:intron 50.0%
AGCACACGTGTGTCGTACAA+CGG - Chr1:38669949-38669968 MsG0180002463.01.T01:intron 50.0%
ATGCCTCAAGGCAACCTCTT+GGG - Chr1:38674884-38674903 MsG0180002463.01.T01:CDS 50.0%
ATGCTTACTAACCCTCCACC+TGG + Chr1:38674449-38674468 None:intergenic 50.0%
CAAAGTGCAAGTGCAACCTG+TGG + Chr1:38672637-38672656 None:intergenic 50.0%
CACAGGTTGCACTTGCACTT+TGG - Chr1:38672635-38672654 MsG0180002463.01.T01:CDS 50.0%
CACATGAAGTGTAACCGCCA+AGG + Chr1:38669914-38669933 None:intergenic 50.0%
CAGATTTCACCTGTCCCAAG+AGG + Chr1:38674901-38674920 None:intergenic 50.0%
CCCTTCCCTGCAAAACTTTC+AGG + Chr1:38673704-38673723 None:intergenic 50.0%
GATGCAGTTATGTACGGTGG+TGG + Chr1:38670132-38670151 None:intergenic 50.0%
GGAGTTGCTGAAGCAAGAAG+TGG + Chr1:38670504-38670523 None:intergenic 50.0%
GGTAGAATGCCAGTTGCTGT+TGG + Chr1:38673017-38673036 None:intergenic 50.0%
GTAACAAACTGTCCAGGTGG+AGG - Chr1:38674434-38674453 MsG0180002463.01.T01:intron 50.0%
GTACTGTGTGCGTCACTAAG+AGG + Chr1:38674567-38674586 None:intergenic 50.0%
GTAGGGTTGAGATCAAACGC+TGG - Chr1:38674061-38674080 MsG0180002463.01.T01:intron 50.0%
GTTCTAACCGAATGCTCCAC+AGG - Chr1:38672618-38672637 MsG0180002463.01.T01:CDS 50.0%
GTTGCACTTGCACTTTGGCA+TGG - Chr1:38672640-38672659 MsG0180002463.01.T01:CDS 50.0%
TCCTTGCTTTCGCACCTAAC+CGG - Chr1:38672972-38672991 MsG0180002463.01.T01:CDS 50.0%
TCTAAAAGAGCTCCCACGAG+CGG - Chr1:38669650-38669669 MsG0180002463.01.T01:intron 50.0%
TTCCAAACAGTGCCAAAGGG+AGG - Chr1:38672065-38672084 MsG0180002463.01.T01:intron 50.0%
TTCCTCCCTTTGGCACTGTT+TGG + Chr1:38672070-38672089 None:intergenic 50.0%
! AATGAGAGTGTGTGCGAGGA+AGG + Chr1:38672163-38672182 None:intergenic 50.0%
! AATGCCAGTTGCTGTTGGAG+GGG + Chr1:38673012-38673031 None:intergenic 50.0%
! AGAATGCCAGTTGCTGTTGG+AGG + Chr1:38673014-38673033 None:intergenic 50.0%
! AGCAACGAAACGGGCTTTGT+GGG + Chr1:38670535-38670554 None:intergenic 50.0%
! AGGTGGAGGGTTAGTAAGCA+TGG - Chr1:38674448-38674467 MsG0180002463.01.T01:intron 50.0%
! AGTGCAACCTGTGGAGCATT+CGG + Chr1:38672628-38672647 None:intergenic 50.0%
! ATCAAGAGCAACGACTTGGG+GGG - Chr1:38669703-38669722 MsG0180002463.01.T01:intron 50.0%
! ATGAGAGTGTGTGCGAGGAA+GGG + Chr1:38672162-38672181 None:intergenic 50.0%
! ATGGAATGAGAGTGTGTGCG+AGG + Chr1:38672167-38672186 None:intergenic 50.0%
! ATTGATAACTGGAACGGCGG+GGG + Chr1:38670100-38670119 None:intergenic 50.0%
! GAATGCCAGTTGCTGTTGGA+GGG + Chr1:38673013-38673032 None:intergenic 50.0%
! GGTGGAGGGTTAGTAAGCAT+GGG - Chr1:38674449-38674468 MsG0180002463.01.T01:intron 50.0%
! TGTGAGAGCTTTAGTGCACC+AGG + Chr1:38672341-38672360 None:intergenic 50.0%
! TTGAGCTTCAGAGTGTCTGC+AGG - Chr1:38670068-38670087 MsG0180002463.01.T01:intron 50.0%
! TTGCCTTGAGGCATTTCCAG+AGG + Chr1:38674878-38674897 None:intergenic 50.0%
!! AGGGGTGTTCGGTAAATCAC+CGG + Chr1:38672994-38673013 None:intergenic 50.0%
!! CAAGAAGTGGAAGGCGTTGT+TGG + Chr1:38670491-38670510 None:intergenic 50.0%
!! TTGTCTTGGCTTGTGTGGGA+TGG + Chr1:38670385-38670404 None:intergenic 50.0%
AACACCCCTCCAACAGCAAC+TGG - Chr1:38673005-38673024 MsG0180002463.01.T01:CDS 55.0%
AACCGCCAAGGAGAGATTCG+CGG + Chr1:38669902-38669921 None:intergenic 55.0%
ACAGCTTCAGGGTTCCCCTA+TGG - Chr1:38670944-38670963 MsG0180002463.01.T01:intron 55.0%
ACATACGCAGGGTCCGAGAA+GGG - Chr1:38672358-38672377 MsG0180002463.01.T01:intron 55.0%
ACCGGTTAGGTGCGAAAGCA+AGG + Chr1:38672976-38672995 None:intergenic 55.0%
AGTAGCGGTGGCCAGAGTTA+TGG - Chr1:38674729-38674748 MsG0180002463.01.T01:intron 55.0%
ATGGAGCCATTTGGCTAGGG+AGG - Chr1:38674533-38674552 MsG0180002463.01.T01:intron 55.0%
CCTTACGGCGAGCAACGAAA+CGG + Chr1:38670545-38670564 None:intergenic 55.0%
CTGCAACCTCCCTAGCCAAA+TGG + Chr1:38674542-38674561 None:intergenic 55.0%
CTTACGGCGAGCAACGAAAC+GGG + Chr1:38670544-38670563 None:intergenic 55.0%
GATTATCAAGCCTGGGCCTC+TGG - Chr1:38674859-38674878 MsG0180002463.01.T01:CDS 55.0%
TACGACACACGTGTGCTCGA+CGG + Chr1:38669946-38669965 None:intergenic 55.0%
TCAAGGCAACCTCTTGGGAC+AGG - Chr1:38674889-38674908 MsG0180002463.01.T01:CDS 55.0%
TGGAGTTGACACGCTTGCGA+TGG + Chr1:38669560-38669579 None:intergenic 55.0%
TGTCCCAAGAGGTTGCCTTG+AGG + Chr1:38674890-38674909 None:intergenic 55.0%
! AAACGGGCTTTGTGGGTCGA+AGG + Chr1:38670528-38670547 None:intergenic 55.0%
! CGTTCTGAGCAGCGACCATA+GGG + Chr1:38670962-38670981 None:intergenic 55.0%
! CTTGCTGACTACAGTAGCGG+TGG - Chr1:38674717-38674736 MsG0180002463.01.T01:intron 55.0%
! GAGCAACGAAACGGGCTTTG+TGG + Chr1:38670536-38670555 None:intergenic 55.0%
! GCTCGTGGGAGCTCTTTTAG+AGG + Chr1:38669651-38669670 None:intergenic 55.0%
! GTTCTGAGCAGCGACCATAG+GGG + Chr1:38670961-38670980 None:intergenic 55.0%
! TCGTTCTGAGCAGCGACCAT+AGG + Chr1:38670963-38670982 None:intergenic 55.0%
! TGGCTTGTGTGGGATGGATG+TGG + Chr1:38670379-38670398 None:intergenic 55.0%
!! GTTGCTGTTGGAGGGGTGTT+CGG + Chr1:38673005-38673024 None:intergenic 55.0%
!!! GCACCAGGCTGCCCTTTTTT+TGG + Chr1:38672326-38672345 None:intergenic 55.0%
ACACACTCTCTACCCGCGAG+AGG - Chr1:38669819-38669838 MsG0180002463.01.T01:intron 60.0%
ACCGCCAAGGAGAGATTCGC+GGG + Chr1:38669901-38669920 None:intergenic 60.0%
CACACTCTCTACCCGCGAGA+GGG - Chr1:38669820-38669839 MsG0180002463.01.T01:intron 60.0%
CACATACGCAGGGTCCGAGA+AGG - Chr1:38672357-38672376 MsG0180002463.01.T01:intron 60.0%
CATACGCAGGGTCCGAGAAG+GGG - Chr1:38672359-38672378 MsG0180002463.01.T01:intron 60.0%
CCGTTTCGTTGCTCGCCGTA+AGG - Chr1:38670542-38670561 MsG0180002463.01.T01:intron 60.0%
GACTTGGGGGGCTACTGTTC+TGG - Chr1:38669715-38669734 MsG0180002463.01.T01:intron 60.0%
GTGCGAGGAAGGGACACACA+TGG + Chr1:38672152-38672171 None:intergenic 60.0%
TCCCGCGAATCTCTCCTTGG+CGG - Chr1:38669897-38669916 MsG0180002463.01.T01:intron 60.0%
! CCAATGGTGGGACCCCTTCT+CGG + Chr1:38672374-38672393 None:intergenic 60.0%
! GGGCCTCTGGAAATGCCTCA+AGG - Chr1:38674872-38674891 MsG0180002463.01.T01:CDS 60.0%
! TGAGGCATTTCCAGAGGCCC+AGG + Chr1:38674872-38674891 None:intergenic 60.0%
CCGAGAAGGGGTCCCACCAT+TGG - Chr1:38672371-38672390 MsG0180002463.01.T01:intron 65.0%
GGCTCCCGCGAATCTCTCCT+TGG - Chr1:38669894-38669913 MsG0180002463.01.T01:intron 65.0%
TTGCTCCGAGCACCCTCTCG+CGG + Chr1:38669835-38669854 None:intergenic 65.0%
! CGGGCTTTGTGGGTCGAAGG+AGG + Chr1:38670525-38670544 None:intergenic 65.0%
!! TCTACCCGCGAGAGGGTGCT+CGG - Chr1:38669827-38669846 MsG0180002463.01.T01:intron 65.0%
AATGGGCGGGAGACCGCTCG+TGG + Chr1:38669666-38669685 None:intergenic 70.0%
ATGGGCGGGAGACCGCTCGT+GGG + Chr1:38669665-38669684 None:intergenic 70.0%
TGCTCCGAGCACCCTCTCGC+GGG + Chr1:38669834-38669853 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 38669383 38674921 38669383 ID=MsG0180002463.01;Name=MsG0180002463.01
Chr1 mRNA 38669383 38674921 38669383 ID=MsG0180002463.01.T01;Parent=MsG0180002463.01;Name=MsG0180002463.01.T01;_AED=0.53;_eAED=0.60;_QI=0|0.16|0.14|0.85|0.5|0.57|7|0|255
Chr1 exon 38674778 38674921 38674778 ID=MsG0180002463.01.T01:exon:12663;Parent=MsG0180002463.01.T01
Chr1 exon 38673262 38673356 38673262 ID=MsG0180002463.01.T01:exon:12664;Parent=MsG0180002463.01.T01
Chr1 exon 38672969 38673069 38672969 ID=MsG0180002463.01.T01:exon:12665;Parent=MsG0180002463.01.T01
Chr1 exon 38672768 38672850 38672768 ID=MsG0180002463.01.T01:exon:12666;Parent=MsG0180002463.01.T01
Chr1 exon 38672503 38672676 38672503 ID=MsG0180002463.01.T01:exon:12667;Parent=MsG0180002463.01.T01
Chr1 exon 38671583 38671664 38671583 ID=MsG0180002463.01.T01:exon:12668;Parent=MsG0180002463.01.T01
Chr1 exon 38669383 38669471 38669383 ID=MsG0180002463.01.T01:exon:12669;Parent=MsG0180002463.01.T01
Chr1 CDS 38674778 38674921 38674778 ID=MsG0180002463.01.T01:cds;Parent=MsG0180002463.01.T01
Chr1 CDS 38673262 38673356 38673262 ID=MsG0180002463.01.T01:cds;Parent=MsG0180002463.01.T01
Chr1 CDS 38672969 38673069 38672969 ID=MsG0180002463.01.T01:cds;Parent=MsG0180002463.01.T01
Chr1 CDS 38672768 38672850 38672768 ID=MsG0180002463.01.T01:cds;Parent=MsG0180002463.01.T01
Chr1 CDS 38672503 38672676 38672503 ID=MsG0180002463.01.T01:cds;Parent=MsG0180002463.01.T01
Chr1 CDS 38671583 38671664 38671583 ID=MsG0180002463.01.T01:cds;Parent=MsG0180002463.01.T01
Chr1 CDS 38669383 38669471 38669383 ID=MsG0180002463.01.T01:cds;Parent=MsG0180002463.01.T01
Gene Sequence

>MsG0180002463.01.T01

ATGCGAACTACATCATTTCAGGGCAAGTACGCTCACTATGCAGTCATTGTGACCATGGTAGAACTTGTGAGGTATTCCCTTATGAACAACATTGTTAAACTTATGAATATCCGACACATGATCATTGCAACCATAGTAGAACTTCTTCAGGGTTCCCCTATGGTCGCTGCTCAGAACGACAGTTTGAGTTTGATGGTCAGTAGTAGTTTGCTAAATCTCTTGTTACTTATCGAATCTCGATGTTACTATTCGTTTAAAGTAGTAAATGTGAATGTAGCTAAGGATGGTTACGGTGATTTCAAAATTATATGGATACCTCCATGTTACTCAAGAAGTAGAGCTATAATGGTGAACCGGATATCGTGTGAAAGTGACTCAGATAAGTCACTGGTGCAGCAACTCACATCAGACACCATAATTGAGGTAAGCATTGACATTCCTTTCGCTTTCAAAGCAATACCAAAGCAAGCAATTGAATCAGCTGGGACTCAAGTCCTTGAACAAATACTCAAGATTATGCTTCCCGTTTTATGTCACAGGTTTGTTAAAGCTCAATATATTATTTACATGTTTGATTTAAGATTTGTTTCTATTTTTGTTGCACTTGCACTTTGGCATGGAAATGTTTCAATGTTGCCTATTTACTCAACCATATCCATGAAATATAATCAGCATAAATTTATTTGTCTTGAACAGCTTGTGAAAGATTATCAAGCCTGGGCCTCTGGAAATGCCTCAAGGCAACCTCTTGGGACAGGTGAAATCTGA

Protein sequence

>MsG0180002463.01.T01

MRTTSFQGKYAHYAVIVTMVELVRYSLMNNIVKLMNIRHMIIATIVELLQGSPMVAAQNDSLSLMVSSSLLNLLLLIESRCYYSFKVVNVNVAKDGYGDFKIIWIPPCYSRSRAIMVNRISCESDSDKSLVQQLTSDTIIEVSIDIPFAFKAIPKQAIESAGTQVLEQILKIMLPVLCHRFVKAQYIIYMFDLRFVSIFVALALWHGNVSMLPIYSTISMKYNQHKFICLEQLVKDYQAWASGNASRQPLGTGEI*