AlfalfaGEDB | MsG0480019337.01

M. sativa cultivar ZhongmuNo.1 / MsG0480019337.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019337.01.T01	XP_004506453.1	75.41	61	14	1	17	76	380	440	2.14E-17	86.3

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480019337.01.T01	A0A1S2YL64	75.410	61	14	1	17	76	380	440	1.02e-17	86.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0480019337.01	0.823348	1.453534e-53	1.248285e-50
MsG0080047944.01	MsG0480019337.01	0.813271	2.785597e-51	1.810774e-48
MsG0080047959.01	MsG0480019337.01	0.802203	6.272712e-49	3.054215e-46
MsG0080048856.01	MsG0480019337.01	0.801266	9.763947e-49	4.642759e-46
MsG0080048874.01	MsG0480019337.01	0.802481	5.496874e-49	2.695557e-46
MsG0180000470.01	MsG0480019337.01	0.830988	2.153540e-55	2.306026e-52
MsG0180000550.01	MsG0480019337.01	0.807570	4.739930e-50	2.648997e-47
MsG0180000650.01	MsG0480019337.01	0.804434	2.164139e-49	1.115705e-46
MsG0180001063.01	MsG0480019337.01	0.810093	1.367861e-50	8.170964e-48
MsG0180001410.01	MsG0480019337.01	0.806429	8.263432e-50	4.484129e-47
MsG0180001971.01	MsG0480019337.01	0.812928	3.312658e-51	2.133499e-48
MsG0180002089.01	MsG0480019337.01	0.818212	2.205353e-52	1.640489e-49
MsG0180002195.01	MsG0480019337.01	0.810738	9.926996e-51	6.032168e-48
MsG0180003669.01	MsG0480019337.01	0.840686	7.490139e-58	1.075142e-54
MsG0180004264.01	MsG0480019337.01	0.829438	5.147256e-55	5.268053e-52
MsG0180005050.01	MsG0480019337.01	0.802840	4.634465e-49	2.293696e-46
MsG0180005250.01	MsG0480019337.01	0.801340	9.431769e-49	4.493129e-46
MsG0180005763.01	MsG0480019337.01	0.806669	7.353691e-50	4.014765e-47
MsG0180006257.01	MsG0480019337.01	0.828320	9.601245e-55	9.509906e-52
MsG0280006324.01	MsG0480019337.01	0.816316	5.888817e-52	4.159044e-49
MsG0280010698.01	MsG0480019337.01	0.811487	6.829793e-51	4.233333e-48
MsG0280011156.01	MsG0480019337.01	0.800705	1.271729e-48	5.961407e-46
MsG0280011175.01	MsG0480019337.01	0.816875	4.413020e-52	3.164808e-49
MsG0380011609.01	MsG0480019337.01	0.826872	2.137431e-54	2.029564e-51
MsG0380011755.01	MsG0480019337.01	0.803295	3.732536e-49	1.868732e-46
MsG0380011895.01	MsG0480019337.01	0.801012	1.100555e-48	5.200000e-46
MsG0380014251.01	MsG0480019337.01	0.811998	5.289183e-51	3.323065e-48
MsG0380014537.01	MsG0480019337.01	0.800596	1.337949e-48	6.254877e-46
MsG0380014573.01	MsG0480019337.01	0.803413	3.528041e-49	1.771780e-46
MsG0480018964.01	MsG0480019337.01	0.829586	4.738980e-55	4.871198e-52
MsG0480019336.01	MsG0480019337.01	0.805837	1.100724e-49	5.883596e-47
MsG0480019337.01	MsG0480019795.01	0.811835	5.738232e-51	3.589391e-48
MsG0480019337.01	MsG0480020634.01	0.818541	1.857459e-52	1.394366e-49
MsG0480019337.01	MsG0480021536.01	0.820877	5.438469e-53	4.356144e-50
MsG0480019337.01	MsG0480021558.01	0.814751	1.313293e-51	8.886671e-49
MsG0480019337.01	MsG0480021853.01	0.818127	2.305160e-52	1.710752e-49
MsG0480019337.01	MsG0480021925.01	0.813357	2.666262e-51	1.737397e-48
MsG0480019337.01	MsG0480022222.01	0.800004	1.766458e-48	8.134860e-46
MsG0480019337.01	MsG0480022259.01	0.816658	4.935646e-52	3.518572e-49
MsG0480019337.01	MsG0480022795.01	0.801543	8.568501e-49	4.102844e-46
MsG0480019337.01	MsG0480023654.01	0.809644	1.708957e-50	1.008949e-47
MsG0480019337.01	MsG0480023707.01	0.810543	1.093947e-50	6.612380e-48
MsG0480019337.01	MsG0580024552.01	0.811828	5.758200e-51	3.601216e-48
MsG0480019337.01	MsG0580025022.01	0.823490	1.346884e-53	1.161450e-50
MsG0480019337.01	MsG0580025201.01	0.800530	1.380307e-48	6.442045e-46
MsG0480019337.01	MsG0580025638.01	0.807278	5.465386e-50	3.031586e-47
MsG0480019337.01	MsG0580026165.01	0.802140	6.461459e-49	3.141149e-46
MsG0480019337.01	MsG0580027833.01	0.807112	5.925987e-50	3.272687e-47
MsG0480019337.01	MsG0580027922.01	0.803496	3.391322e-49	1.706773e-46
MsG0480019337.01	MsG0580028527.01	0.800526	1.383222e-48	6.454899e-46
MsG0480019337.01	MsG0580028990.01	0.808472	3.046275e-50	1.743377e-47
MsG0480019337.01	MsG0580029554.01	0.802165	6.385574e-49	3.106291e-46
MsG0480019337.01	MsG0680030316.01	0.813625	2.328258e-51	1.528209e-48
MsG0480019337.01	MsG0680030882.01	0.823258	1.526133e-53	1.307351e-50
MsG0480019337.01	MsG0680031355.01	0.815852	7.475393e-52	5.212413e-49
MsG0480019337.01	MsG0680031505.01	0.807076	6.032158e-50	3.328204e-47
MsG0480019337.01	MsG0680032996.01	0.806373	8.490895e-50	4.600907e-47
MsG0480019337.01	MsG0680033412.01	0.815476	9.066551e-52	6.257967e-49
MsG0480019337.01	MsG0680034230.01	0.806382	8.451085e-50	4.580402e-47
MsG0480019337.01	MsG0680034565.01	0.823058	1.699390e-53	1.447695e-50
MsG0480019337.01	MsG0680035347.01	0.816295	5.951540e-52	4.200991e-49
MsG0480019337.01	MsG0680035573.01	0.813521	2.454674e-51	1.606643e-48
MsG0480019337.01	MsG0680035692.01	0.841580	4.358324e-58	6.432506e-55
MsG0480019337.01	MsG0680035694.01	0.804457	2.140048e-49	1.103960e-46
MsG0480019337.01	MsG0680035844.01	0.830393	3.012208e-55	3.169504e-52
MsG0480019337.01	MsG0780036128.01	0.826430	2.724309e-54	2.554435e-51
MsG0480019337.01	MsG0780036498.01	0.808488	3.022010e-50	1.730185e-47
MsG0480019337.01	MsG0780037054.01	0.813435	2.563555e-51	1.674005e-48
MsG0480019337.01	MsG0780038391.01	0.806799	6.901729e-50	3.780877e-47
MsG0480019337.01	MsG0780038401.01	0.810226	1.280531e-50	7.675531e-48
MsG0480019337.01	MsG0780038654.01	0.805498	1.296493e-49	6.869706e-47
MsG0480019337.01	MsG0780039252.01	0.806616	7.543017e-50	4.112688e-47
MsG0480019337.01	MsG0780040576.01	-0.806401	8.375264e-50	4.541472e-47
MsG0480019337.01	MsG0780040596.01	0.820539	6.501281e-53	5.158600e-50
MsG0480019337.01	MsG0780040704.01	0.810836	9.454844e-51	5.760358e-48
MsG0480019337.01	MsG0780041456.01	0.840165	1.024505e-57	1.447221e-54
MsG0480019337.01	MsG0880041836.01	0.838974	2.090730e-57	2.846446e-54
MsG0480019337.01	MsG0880042232.01	0.800776	1.229517e-48	5.774145e-46
MsG0480019337.01	MsG0880042294.01	0.812462	4.187919e-51	2.664644e-48
MsG0480019337.01	MsG0880042698.01	0.802605	5.181401e-49	2.548936e-46
MsG0480019337.01	MsG0880042800.01	0.817770	2.775726e-52	2.039983e-49
MsG0480019337.01	MsG0880042966.01	0.832852	7.461429e-56	8.443207e-53
MsG0480019337.01	MsG0880043509.01	0.807602	4.665922e-50	2.609794e-47
MsG0480019337.01	MsG0880044085.01	0.805326	1.408759e-49	7.431753e-47
MsG0480019337.01	MsG0880044415.01	0.801513	8.691674e-49	4.158653e-46
MsG0480019337.01	MsG0880044416.01	0.806419	8.301230e-50	4.503454e-47
MsG0480019337.01	MsG0880044574.01	0.820516	6.580439e-53	5.217811e-50
MsG0480019337.01	MsG0880045895.01	0.800497	1.401661e-48	6.536300e-46
MsG0480019337.01	MsG0880045896.01	0.813066	3.088818e-51	1.996757e-48
MsG0480019337.01	MsG0880045937.01	0.810514	1.110177e-50	6.705346e-48
MsG0480019337.01	MsG0880046620.01	0.803193	3.918320e-49	1.956721e-46
MsG0380015566.01	MsG0480019337.01	0.834308	3.230471e-56	3.818969e-53
MsG0380015720.01	MsG0480019337.01	0.832189	1.089440e-55	1.208691e-52
MsG0380015933.01	MsG0480019337.01	0.820830	5.575721e-53	4.460127e-50
MsG0380016004.01	MsG0480019337.01	0.804617	1.982209e-49	1.026751e-46
MsG0380016064.01	MsG0480019337.01	0.819615	1.058297e-52	8.183785e-50
MsG0380016475.01	MsG0480019337.01	0.822125	2.800182e-53	2.322884e-50
MsG0380016910.01	MsG0480019337.01	0.822412	2.402560e-53	2.009550e-50
MsG0380017140.01	MsG0480019337.01	0.811030	8.582981e-51	5.256373e-48
MsG0380017461.01	MsG0480019337.01	0.827442	1.560640e-54	1.506949e-51
MsG0380017680.01	MsG0480019337.01	0.819364	1.207223e-52	9.270061e-50
MsG0480018163.01	MsG0480019337.01	0.821273	4.408608e-53	3.569991e-50
MsG0480018250.01	MsG0480019337.01	0.800427	1.448345e-48	6.742299e-46
MsG0280006491.01	MsG0480019337.01	0.807189	5.706460e-50	3.157942e-47
MsG0280008112.01	MsG0480019337.01	0.811421	7.059531e-51	4.368018e-48
MsG0280008615.01	MsG0480019337.01	0.839160	1.870349e-57	2.560879e-54
MsG0280008894.01	MsG0480019337.01	0.821920	3.123879e-53	2.576307e-50
MsG0280009297.01	MsG0480019337.01	0.807544	4.800094e-50	2.680903e-47
MsG0280010443.01	MsG0480019337.01	0.823580	1.282853e-53	1.109045e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 13 sgRNAs with CRISPR-Local

Find 13 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTGATAATGTTGCTGTTAT+AGG	0.203344	4:+18629770	MsG0480019337.01.T01:CDS
ATCCTGTTGTTGCATGTAAT+AGG	0.349513	4:+18629671	MsG0480019337.01.T01:CDS
ACATGCAACAACAGGATATC+TGG	0.351520	4:-18629665	None:intergenic
TCCTGTTGTTGCATGTAATA+GGG	0.398078	4:+18629672	MsG0480019337.01.T01:CDS
CTTCTTCTACCGTTTGATGA+AGG	0.424965	4:-18629842	None:intergenic
AGTCATTTCGATATTCTTGT+TGG	0.454214	4:-18629896	None:intergenic
TTCTTCTACCGTTTGATGAA+GGG	0.463767	4:-18629841	None:intergenic
TCCCTATTACATGCAACAAC+AGG	0.466654	4:-18629673	None:intergenic
TCAAACGGTAGAAGAAGAAA+TGG	0.486110	4:+18629848	MsG0480019337.01.T01:CDS
CTGTTAGACCCTTCATCAAA+CGG	0.513492	4:+18629833	MsG0480019337.01.T01:CDS
TCAACATTCCTATTTAACAG+AGG	0.637888	4:-18629752	None:intergenic
TGCAGCTGTAGAATCAGTCA+TGG	0.650502	4:-18629717	None:intergenic
AGGCTCAGAAATTCAGACAA+CGG	0.673554	4:+18629790	MsG0480019337.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TCAACATTCCTATTTAACAG+AGG	-	Chr4:18629755-18629774	None:intergenic	30.0%
!!	GTTGATAATGTTGCTGTTAT+AGG	+	Chr4:18629770-18629789	MsG0480019337.01.T01:CDS	30.0%
	ATCCTGTTGTTGCATGTAAT+AGG	+	Chr4:18629671-18629690	MsG0480019337.01.T01:CDS	35.0%
	TCAAACGGTAGAAGAAGAAA+TGG	+	Chr4:18629848-18629867	MsG0480019337.01.T01:CDS	35.0%
	TCCTGTTGTTGCATGTAATA+GGG	+	Chr4:18629672-18629691	MsG0480019337.01.T01:CDS	35.0%
	TTCTTCTACCGTTTGATGAA+GGG	-	Chr4:18629844-18629863	None:intergenic	35.0%
!	CTTTTGTGCCTCTGTTAAAT+AGG	+	Chr4:18629744-18629763	MsG0480019337.01.T01:CDS	35.0%
	ACATGCAACAACAGGATATC+TGG	-	Chr4:18629668-18629687	None:intergenic	40.0%
	AGGCTCAGAAATTCAGACAA+CGG	+	Chr4:18629790-18629809	MsG0480019337.01.T01:CDS	40.0%
	CTGTTAGACCCTTCATCAAA+CGG	+	Chr4:18629833-18629852	MsG0480019337.01.T01:CDS	40.0%
	CTTCTTCTACCGTTTGATGA+AGG	-	Chr4:18629845-18629864	None:intergenic	40.0%
	TCCCTATTACATGCAACAAC+AGG	-	Chr4:18629676-18629695	None:intergenic	40.0%
	TGCAGCTGTAGAATCAGTCA+TGG	-	Chr4:18629720-18629739	None:intergenic	45.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	18629656	18629916	18629656	ID=MsG0480019337.01;Name=MsG0480019337.01
Chr4	mRNA	18629656	18629916	18629656	ID=MsG0480019337.01.T01;Parent=MsG0480019337.01;Name=MsG0480019337.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|86
Chr4	exon	18629656	18629916	18629656	ID=MsG0480019337.01.T01:exon:10874;Parent=MsG0480019337.01.T01
Chr4	CDS	18629656	18629916	18629656	ID=MsG0480019337.01.T01:cds;Parent=MsG0480019337.01.T01

Gene Sequence	>MsG0480019337.01.T01 ATGGCTTATCCAGATATCCTGTTGTTGCATGTAATAGGGAATCTTGCTCAAGATGTTGTTGCCATGACTGATTCTACAGCTGCAGCAGCTTTTGTGCCTCTGTTAAATAGGAATGTTGATAATGTTGCTGTTATAGGCTCAGAAATTCAGACAACGGATAGAAACTTACAGATTAGTCTGTTAGACCCTTCATCAAACGGTAGAAGAAGAAATGGCGTTTCAAGACAAGTTTCAAATGAACCAACAAGAATATCGAAATGA
Protein sequence	>MsG0480019337.01.T01 MAYPDILLLHVIGNLAQDVVAMTDSTAAAAFVPLLNRNVDNVAVIGSEIQTTDRNLQISLLDPSSNGRRRNGVSRQVSNEPTRISK*