Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018965.01.T01 | AES87101.2 | 97.046 | 474 | 14 | 0 | 1 | 474 | 6 | 479 | 0 | 962 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018965.01.T01 | Q9XID5 | 25.229 | 218 | 159 | 2 | 14 | 231 | 155 | 368 | 1.51E-12 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018965.01.T01 | G7JTD5 | 97.046 | 474 | 14 | 0 | 1 | 474 | 6 | 479 | 0.0 | 962 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048652.01 | MsG0480018965.01 | 0.832169 | 1.101782e-55 | 1.221644e-52 |
| MsG0080049042.01 | MsG0480018965.01 | 0.826857 | 2.155529e-54 | 2.045823e-51 |
| MsG0180001079.01 | MsG0480018965.01 | 0.801773 | 7.687179e-49 | 3.702263e-46 |
| MsG0180001802.01 | MsG0480018965.01 | 0.807733 | 4.375510e-50 | 2.455917e-47 |
| MsG0180003375.01 | MsG0480018965.01 | 0.802327 | 5.913498e-49 | 2.888707e-46 |
| MsG0180004491.01 | MsG0480018965.01 | 0.811966 | 5.372808e-51 | 3.372734e-48 |
| MsG0380012913.01 | MsG0480018965.01 | 0.809337 | 1.988722e-50 | 1.164529e-47 |
| MsG0380012918.01 | MsG0480018965.01 | 0.804300 | 2.307829e-49 | 1.185714e-46 |
| MsG0380013405.01 | MsG0480018965.01 | 0.823989 | 1.029289e-53 | 9.001176e-51 |
| MsG0380013406.01 | MsG0480018965.01 | 0.819825 | 9.476607e-53 | 7.371925e-50 |
| MsG0380013986.01 | MsG0480018965.01 | -0.806478 | 8.066539e-50 | 4.382817e-47 |
| MsG0380014410.01 | MsG0480018965.01 | 0.805990 | 1.021951e-49 | 5.484119e-47 |
| MsG0480018965.01 | MsG0480019107.01 | 0.839619 | 1.422115e-57 | 1.974767e-54 |
| MsG0480018965.01 | MsG0480019726.01 | 0.813266 | 2.792362e-51 | 1.814943e-48 |
| MsG0480018965.01 | MsG0480020722.01 | 0.828858 | 7.114798e-55 | 7.157930e-52 |
| MsG0480018965.01 | MsG0480023094.01 | 0.805483 | 1.306007e-49 | 6.917528e-47 |
| MsG0480018965.01 | MsG0480023195.01 | 0.826716 | 2.328690e-54 | 2.201176e-51 |
| MsG0480018965.01 | MsG0580025117.01 | 0.815135 | 1.079366e-51 | 7.379693e-49 |
| MsG0480018965.01 | MsG0580027641.01 | 0.835898 | 1.283033e-56 | 1.590758e-53 |
| MsG0480018965.01 | MsG0680030545.01 | 0.809809 | 1.575128e-50 | 9.339624e-48 |
| MsG0480018965.01 | MsG0680030961.01 | 0.819542 | 1.099621e-52 | 8.486610e-50 |
| MsG0480018965.01 | MsG0680035842.01 | 0.811485 | 6.839394e-51 | 4.238951e-48 |
| MsG0480018965.01 | MsG0780037751.01 | 0.800033 | 1.742397e-48 | 8.030001e-46 |
| MsG0480018965.01 | MsG0780039917.01 | 0.803124 | 4.048529e-49 | 2.018062e-46 |
| MsG0480018965.01 | MsG0780040480.01 | 0.808574 | 2.896373e-50 | 1.661950e-47 |
| MsG0480018965.01 | MsG0780040574.01 | 0.804025 | 2.632823e-49 | 1.343210e-46 |
| MsG0480018965.01 | MsG0780040878.01 | 0.814969 | 1.174995e-51 | 7.997761e-49 |
| MsG0480018965.01 | MsG0780041133.01 | 0.805203 | 1.494887e-49 | 7.861247e-47 |
| MsG0480018965.01 | MsG0880042810.01 | 0.822550 | 2.230983e-53 | 1.873437e-50 |
| MsG0480018965.01 | MsG0880043185.01 | 0.814967 | 1.176198e-51 | 8.005565e-49 |
| MsG0480018965.01 | MsG0880043364.01 | 0.801696 | 7.970333e-49 | 3.831130e-46 |
| MsG0480018965.01 | MsG0880045861.01 | 0.812630 | 3.848783e-51 | 2.459555e-48 |
| MsG0480018965.01 | MsG0880047714.01 | 0.817101 | 3.926708e-52 | 2.833303e-49 |
| MsG0380017766.01 | MsG0480018965.01 | 0.801597 | 8.351892e-49 | 4.004388e-46 |
| MsG0480018440.01 | MsG0480018965.01 | 0.810476 | 1.131158e-50 | 6.825320e-48 |
| MsG0280007759.01 | MsG0480018965.01 | 0.828641 | 8.029192e-55 | 8.027982e-52 |
| MsG0280007760.01 | MsG0480018965.01 | 0.825586 | 4.325080e-54 | 3.958833e-51 |
| MsG0280007786.01 | MsG0480018965.01 | 0.807979 | 3.879341e-50 | 2.191428e-47 |
| MsG0280010296.01 | MsG0480018965.01 | 0.808516 | 2.980063e-50 | 1.707438e-47 |
| MsG0280010502.01 | MsG0480018965.01 | 0.807614 | 4.638941e-50 | 2.595519e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018965.01.T01 | MTR_4g021260 | 97.046 | 474 | 14 | 0 | 1 | 474 | 6 | 479 | 0.0 | 962 |
| MsG0480018965.01.T01 | MTR_7g063040 | 47.579 | 475 | 223 | 8 | 12 | 473 | 23 | 484 | 1.45e-140 | 412 |
| MsG0480018965.01.T01 | MTR_0318s0020 | 29.289 | 478 | 271 | 9 | 14 | 474 | 128 | 555 | 7.92e-57 | 198 |
| MsG0480018965.01.T01 | MTR_6g461910 | 29.899 | 495 | 298 | 12 | 5 | 474 | 27 | 497 | 1.54e-53 | 188 |
| MsG0480018965.01.T01 | MTR_1g073890 | 43.458 | 214 | 112 | 2 | 12 | 225 | 44 | 248 | 4.51e-46 | 169 |
| MsG0480018965.01.T01 | MTR_1g073890 | 41.096 | 146 | 81 | 2 | 325 | 470 | 405 | 545 | 1.05e-29 | 122 |
| MsG0480018965.01.T01 | MTR_1g044135 | 40.187 | 214 | 118 | 1 | 12 | 225 | 41 | 244 | 4.80e-46 | 169 |
| MsG0480018965.01.T01 | MTR_1g044135 | 45.205 | 146 | 75 | 3 | 325 | 470 | 435 | 575 | 8.12e-33 | 132 |
| MsG0480018965.01.T01 | MTR_3g091180 | 42.254 | 142 | 82 | 0 | 326 | 467 | 422 | 563 | 3.37e-31 | 127 |
| MsG0480018965.01.T01 | MTR_3g091180 | 28.231 | 294 | 178 | 6 | 3 | 282 | 15 | 289 | 6.06e-25 | 108 |
| MsG0480018965.01.T01 | MTR_1g092540 | 32.520 | 246 | 136 | 8 | 237 | 468 | 341 | 570 | 1.56e-30 | 125 |
| MsG0480018965.01.T01 | MTR_1g092540 | 30.045 | 223 | 148 | 1 | 3 | 225 | 15 | 229 | 1.82e-29 | 122 |
| MsG0480018965.01.T01 | MTR_7g103490 | 39.726 | 146 | 87 | 1 | 329 | 474 | 395 | 539 | 9.71e-27 | 113 |
| MsG0480018965.01.T01 | MTR_7g103490 | 25.940 | 266 | 177 | 5 | 4 | 261 | 19 | 272 | 1.17e-15 | 79.7 |
| MsG0480018965.01.T01 | MTR_1g061540 | 38.514 | 148 | 79 | 4 | 323 | 467 | 379 | 517 | 5.85e-23 | 102 |
| MsG0480018965.01.T01 | MTR_1g061540 | 27.897 | 233 | 158 | 2 | 10 | 239 | 25 | 250 | 1.29e-19 | 92.0 |
| MsG0480018965.01.T01 | MTR_1g096970 | 25.000 | 232 | 168 | 2 | 14 | 245 | 51 | 276 | 4.29e-14 | 74.7 |
| MsG0480018965.01.T01 | MTR_1g096970 | 28.571 | 147 | 88 | 3 | 328 | 464 | 269 | 408 | 2.99e-11 | 65.9 |
| MsG0480018965.01.T01 | MTR_3g114010 | 24.766 | 214 | 155 | 2 | 14 | 227 | 122 | 329 | 3.66e-12 | 68.9 |
| MsG0480018965.01.T01 | MTR_1g025340 | 24.775 | 222 | 153 | 3 | 8 | 225 | 121 | 332 | 2.63e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018965.01.T01 | AT3G23160 | 40.807 | 223 | 122 | 2 | 4 | 226 | 34 | 246 | 1.03e-47 | 172 |
| MsG0480018965.01.T01 | AT3G23160 | 39.744 | 156 | 88 | 4 | 316 | 470 | 347 | 497 | 3.82e-29 | 120 |
| MsG0480018965.01.T01 | AT5G51670 | 26.585 | 489 | 293 | 8 | 2 | 474 | 20 | 458 | 9.95e-45 | 163 |
| MsG0480018965.01.T01 | AT5G51670 | 26.585 | 489 | 293 | 8 | 2 | 474 | 20 | 458 | 9.95e-45 | 163 |
| MsG0480018965.01.T01 | AT5G04550 | 29.412 | 221 | 147 | 1 | 14 | 234 | 26 | 237 | 1.44e-26 | 113 |
| MsG0480018965.01.T01 | AT5G04550 | 37.255 | 153 | 96 | 0 | 322 | 474 | 425 | 577 | 4.92e-26 | 112 |
| MsG0480018965.01.T01 | AT5G04550 | 29.412 | 221 | 147 | 1 | 14 | 234 | 26 | 237 | 1.44e-26 | 113 |
| MsG0480018965.01.T01 | AT5G04550 | 37.255 | 153 | 96 | 0 | 322 | 474 | 425 | 577 | 4.92e-26 | 112 |
| MsG0480018965.01.T01 | AT1G34320 | 25.229 | 218 | 159 | 2 | 14 | 231 | 155 | 368 | 1.54e-13 | 73.6 |
| MsG0480018965.01.T01 | AT1G34320 | 25.229 | 218 | 159 | 2 | 14 | 231 | 155 | 368 | 1.54e-13 | 73.6 |
Find 161 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCATGCTCTTTGGTTT+TGG | 0.148875 | 4:+12555826 | MsG0480018965.01.T01:CDS |
| GACAACAACAACAACGTTAT+TGG | 0.208028 | 4:+12555584 | MsG0480018965.01.T01:CDS |
| GCGAGGATGCCGAGGGTTTC+GGG | 0.218886 | 4:-12555148 | None:intergenic |
| AGCCAAGATCACAACATTTC+TGG | 0.242412 | 4:-12555378 | None:intergenic |
| GACATTGCATTACTCTGATT+TGG | 0.257344 | 4:+12556446 | MsG0480018965.01.T01:CDS |
| CACAACATTTCTGGCCTATA+CGG | 0.259057 | 4:-12555369 | None:intergenic |
| TTAGTTGCTACTTTGGAAAT+AGG | 0.267306 | 4:-12555958 | None:intergenic |
| CGGACTTCACCACACGCTTC+TGG | 0.270749 | 4:-12555933 | None:intergenic |
| GGCGAGGATGCCGAGGGTTT+CGG | 0.276811 | 4:-12555149 | None:intergenic |
| ATTTCAAGGAAACATCATTA+TGG | 0.291243 | 4:+12555689 | MsG0480018965.01.T01:CDS |
| GTTTGACCATTGTTGCCTTC+TGG | 0.297365 | 4:+12555849 | MsG0480018965.01.T01:CDS |
| TTGAGAAACCTTATCACATT+AGG | 0.320704 | 4:-12555982 | None:intergenic |
| TTGGGTTGAGTTGTGTATAT+TGG | 0.321774 | 4:+12556502 | MsG0480018965.01.T01:CDS |
| AACAACAATTCCATGCTCTT+TGG | 0.324326 | 4:+12555820 | MsG0480018965.01.T01:CDS |
| CGAAGGATGGCGGGAGGCGG+TGG | 0.324835 | 4:+12556311 | MsG0480018965.01.T01:CDS |
| TCCCGGTAGCATCTCGTATA+AGG | 0.330031 | 4:-12556205 | None:intergenic |
| TTCGGGCTCCGGCATCGTCT+TGG | 0.333568 | 4:-12555131 | None:intergenic |
| GGCCAGAAATGTTGTGATCT+TGG | 0.339336 | 4:+12555376 | MsG0480018965.01.T01:CDS |
| ACCTTCATCCTCAATCTTCC+CGG | 0.355259 | 4:-12556222 | None:intergenic |
| TCATTGAAATATTCCATGTT+TGG | 0.355934 | 4:-12555634 | None:intergenic |
| GTGGAGTTGGGCTTGCTTTG+AGG | 0.358617 | 4:+12556109 | MsG0480018965.01.T01:CDS |
| ATTAGGTTTAGTTGCTACTT+TGG | 0.363302 | 4:-12555965 | None:intergenic |
| CAGAAGCGTGTGGTGAAGTC+CGG | 0.375902 | 4:+12555934 | MsG0480018965.01.T01:CDS |
| GTGGCATGGGGAAAGGCATT+TGG | 0.376216 | 4:+12556380 | MsG0480018965.01.T01:CDS |
| ATTCAAATATGTCACACCTT+TGG | 0.384344 | 4:-12555266 | None:intergenic |
| AGGATGGCGGGAGGCGGTGG+AGG | 0.392441 | 4:+12556314 | MsG0480018965.01.T01:CDS |
| TCGGGCTCCGGCATCGTCTT+GGG | 0.396084 | 4:-12555130 | None:intergenic |
| GGAATACATGGCAGAATTAG+AGG | 0.396823 | 4:+12555546 | MsG0480018965.01.T01:CDS |
| ATGCCGAGGGTTTCGGGCTC+CGG | 0.397498 | 4:-12555142 | None:intergenic |
| TCCATGTTTGGCTTGAGACT+TGG | 0.400728 | 4:-12555622 | None:intergenic |
| CCAACTCCACCCACTGTTGA+TGG | 0.409492 | 4:-12556096 | None:intergenic |
| GAGAGTTGTATGGCAGCTTT+CGG | 0.410983 | 4:-12555453 | None:intergenic |
| GTTCGGCAGCGGCGAGGGTG+AGG | 0.414338 | 4:-12555309 | None:intergenic |
| TGACAAAACGGTTGGGATCA+TGG | 0.418669 | 4:+12555723 | MsG0480018965.01.T01:CDS |
| GAGGCGACACATGGTCTTAC+CGG | 0.422452 | 4:-12555179 | None:intergenic |
| ATGACACAGTCCGGTGGCAT+GGG | 0.427068 | 4:+12556367 | MsG0480018965.01.T01:CDS |
| CCCAACCAACACTTCCACTA+TGG | 0.427548 | 4:-12556484 | None:intergenic |
| CATCAACAGTGGGTGGAGTT+GGG | 0.434715 | 4:+12556097 | MsG0480018965.01.T01:CDS |
| GTCGAGCTCCTCGAGGCGTT+CGG | 0.435485 | 4:-12555326 | None:intergenic |
| CTCCTCGAGGCGTTCGGCAG+CGG | 0.438208 | 4:-12555320 | None:intergenic |
| AAAGCAAGTGCAAAATTTCA+AGG | 0.441316 | 4:+12555675 | MsG0480018965.01.T01:CDS |
| GGCCGAAGGATGGCGGGAGG+CGG | 0.443863 | 4:+12556308 | MsG0480018965.01.T01:CDS |
| CAAACATTTGACAAAACGGT+TGG | 0.446907 | 4:+12555715 | MsG0480018965.01.T01:CDS |
| TTGAATTATGATACAATTCA+CGG | 0.446923 | 4:-12555876 | None:intergenic |
| GCCATAGTGGAAGTGTTGGT+TGG | 0.454513 | 4:+12556483 | MsG0480018965.01.T01:CDS |
| TTCGCTGGCCGAAGGATGGC+GGG | 0.455116 | 4:+12556302 | MsG0480018965.01.T01:CDS |
| CCATCAACAGTGGGTGGAGT+TGG | 0.455394 | 4:+12556096 | MsG0480018965.01.T01:CDS |
| ATTAATGTATGCTCCGAAAA+CGG | 0.456639 | 4:-12555782 | None:intergenic |
| CACCGCCTCCCGCCATCCTT+CGG | 0.458454 | 4:-12556310 | None:intergenic |
| AAACTCATCTCCGCAACCTC+TGG | 0.460643 | 4:+12555508 | MsG0480018965.01.T01:CDS |
| GGAGACAACGCTCTGCCAAT+AGG | 0.466454 | 4:-12556146 | None:intergenic |
| CTATTCTGCCATGGAATACA+TGG | 0.470183 | 4:+12555534 | MsG0480018965.01.T01:CDS |
| GATGAATGGTAATAATGATA+AGG | 0.470751 | 4:+12556056 | MsG0480018965.01.T01:CDS |
| ACTCCACCCACTGTTGATGG+TGG | 0.471222 | 4:-12556093 | None:intergenic |
| AGAATAGAGACCAGAGGTTG+CGG | 0.471407 | 4:-12555518 | None:intergenic |
| ATTCGCTGGCCGAAGGATGG+CGG | 0.476327 | 4:+12556301 | MsG0480018965.01.T01:CDS |
| CTCCAACTGTCGCGGGCGCG+TGG | 0.476734 | 4:-12556167 | None:intergenic |
| CAAATCACGGTGTTTCAGAA+TGG | 0.477832 | 4:+12555896 | MsG0480018965.01.T01:CDS |
| GAAACAAACATTTGACAAAA+CGG | 0.478541 | 4:+12555711 | MsG0480018965.01.T01:CDS |
| CAACTAAACCTAATGTGATA+AGG | 0.478852 | 4:+12555974 | MsG0480018965.01.T01:CDS |
| GGCATCCTCGCCTTTGACGC+CGG | 0.480797 | 4:+12555160 | MsG0480018965.01.T01:CDS |
| AATTACACCTTGTTTAAGAT+CGG | 0.483559 | 4:-12555425 | None:intergenic |
| CAGTCCGGTGGCATGGGGAA+AGG | 0.485092 | 4:+12556373 | MsG0480018965.01.T01:CDS |
| CTCCACCCACTGTTGATGGT+GGG | 0.486986 | 4:-12556092 | None:intergenic |
| CATGACACAGTCCGGTGGCA+TGG | 0.487633 | 4:+12556366 | MsG0480018965.01.T01:CDS |
| CCATAGTGGAAGTGTTGGTT+GGG | 0.488653 | 4:+12556484 | MsG0480018965.01.T01:CDS |
| TGCTACTTTGGAAATAGGCC+CGG | 0.489137 | 4:-12555953 | None:intergenic |
| CTCCACGCGCCCGCGACAGT+TGG | 0.489465 | 4:+12556165 | MsG0480018965.01.T01:CDS |
| GGTGATTTCTTCGTCGGAGA+GGG | 0.494191 | 4:-12555218 | None:intergenic |
| GAGGCGTTCGGCAGCGGCGA+GGG | 0.495495 | 4:-12555314 | None:intergenic |
| GGCATTCGCTGGCCGAAGGA+TGG | 0.496251 | 4:+12556298 | MsG0480018965.01.T01:CDS |
| TACAACCTCATGGAGGAGCT+TGG | 0.498310 | 4:-12555239 | None:intergenic |
| GAGCTTGGTGATTTCTTCGT+CGG | 0.499026 | 4:-12555224 | None:intergenic |
| GGAGGCGGTGGAGGAGCTGA+TGG | 0.501521 | 4:+12556323 | MsG0480018965.01.T01:CDS |
| AGGACATGACGGGCATTCGC+TGG | 0.501959 | 4:+12556287 | MsG0480018965.01.T01:CDS |
| AAACATTTGACAAAACGGTT+GGG | 0.503683 | 4:+12555716 | MsG0480018965.01.T01:CDS |
| ATAGAGCTCCGAGAGTTGTA+TGG | 0.505072 | 4:-12555463 | None:intergenic |
| GCCTTATACGAGATGCTACC+GGG | 0.508415 | 4:+12556204 | MsG0480018965.01.T01:CDS |
| CATGGTCTTACCGGCGTCAA+AGG | 0.512290 | 4:-12555170 | None:intergenic |
| GAAGGTAAAGGCAAAGCTAA+AGG | 0.512981 | 4:+12556239 | MsG0480018965.01.T01:CDS |
| GAAGGCAGAGACTGCCATAG+TGG | 0.513473 | 4:+12556470 | MsG0480018965.01.T01:CDS |
| GGGAGTTGTAGAGGGAGATG+AGG | 0.514614 | 4:-12555198 | None:intergenic |
| AGAAGCGTGTGGTGAAGTCC+GGG | 0.516857 | 4:+12555935 | MsG0480018965.01.T01:CDS |
| GCGTCCTCTCCAACTGTCGC+GGG | 0.517317 | 4:-12556174 | None:intergenic |
| GCTGATGGAATGGCTGTCTC+CGG | 0.518843 | 4:+12556338 | MsG0480018965.01.T01:CDS |
| TGCGTCCTCTCCAACTGTCG+CGG | 0.521818 | 4:-12556175 | None:intergenic |
| AAAGGGACGGTGGGCGAAAG+AGG | 0.522218 | 4:+12556257 | MsG0480018965.01.T01:CDS |
| AAGGTAAAGGCAAAGCTAAA+GGG | 0.526928 | 4:+12556240 | MsG0480018965.01.T01:CDS |
| GGCCTTATACGAGATGCTAC+CGG | 0.527085 | 4:+12556203 | MsG0480018965.01.T01:CDS |
| CGGTGGAGGAGCTGATGGAA+TGG | 0.527306 | 4:+12556328 | MsG0480018965.01.T01:CDS |
| ATGCCGGAGCCCGAAACCCT+CGG | 0.527389 | 4:+12555139 | MsG0480018965.01.T01:CDS |
| CGGACTGTGTCATGCGCCAC+CGG | 0.530830 | 4:-12556357 | None:intergenic |
| AGATGCTACCGGGAAGATTG+AGG | 0.533778 | 4:+12556214 | MsG0480018965.01.T01:CDS |
| TCCACCCACTGTTGATGGTG+GGG | 0.537885 | 4:-12556091 | None:intergenic |
| CGAGGCGTTCGGCAGCGGCG+AGG | 0.538162 | 4:-12555315 | None:intergenic |
| CGTCGGAGAGGGAGTTGTAG+AGG | 0.538811 | 4:-12555207 | None:intergenic |
| GACGGGCATTCGCTGGCCGA+AGG | 0.539920 | 4:+12556294 | MsG0480018965.01.T01:CDS |
| CGCCGCTGCCGAACGCCTCG+AGG | 0.540932 | 4:+12555318 | MsG0480018965.01.T01:CDS |
| CGGTGGCGCATGACACAGTC+CGG | 0.543794 | 4:+12556358 | MsG0480018965.01.T01:CDS |
| CTCTGGTCTCTATTCTGCCA+TGG | 0.545017 | 4:+12555525 | MsG0480018965.01.T01:CDS |
| CGTCTTGGGACGCCGTGACA+TGG | 0.547021 | 4:-12555116 | None:intergenic |
| ACAACATTTCTGGCCTATAC+GGG | 0.547369 | 4:-12555368 | None:intergenic |
| GTATGCTAATGTGATCCTAT+TGG | 0.548194 | 4:+12556131 | MsG0480018965.01.T01:CDS |
| TCTCAACAATCCTATGCCAA+TGG | 0.552517 | 4:+12555999 | MsG0480018965.01.T01:CDS |
| CGGCAGCGGCGAGGGTGAGG+AGG | 0.553195 | 4:-12555306 | None:intergenic |
| GCCGTTACTGTCTCCCGTAT+AGG | 0.555645 | 4:+12555355 | MsG0480018965.01.T01:CDS |
| GTCGGAGAGGGAGTTGTAGA+GGG | 0.558708 | 4:-12555206 | None:intergenic |
| CATGGCAGAATTAGAGGCCG+CGG | 0.559813 | 4:+12555552 | MsG0480018965.01.T01:CDS |
| ACGGCGTCCCAAGACGATGC+CGG | 0.560395 | 4:+12555123 | MsG0480018965.01.T01:CDS |
| AATGCCTTTCCCCATGCCAC+CGG | 0.562612 | 4:-12556377 | None:intergenic |
| TTGTATCATAATTCAAATCA+CGG | 0.562907 | 4:+12555883 | MsG0480018965.01.T01:CDS |
| GAAAGCTGCCATACAACTCT+CGG | 0.563189 | 4:+12555455 | MsG0480018965.01.T01:CDS |
| TAATTCTGCCATGTATTCCA+TGG | 0.568001 | 4:-12555542 | None:intergenic |
| GCATTACTCTGATTTGGAGA+AGG | 0.568074 | 4:+12556452 | MsG0480018965.01.T01:CDS |
| ACCAAGTCTCAAGCCAAACA+TGG | 0.570002 | 4:+12555621 | MsG0480018965.01.T01:CDS |
| CGACCAGAAGCAAAATCCAT+TGG | 0.571841 | 4:-12556015 | None:intergenic |
| GGCAAAGCTAAAGGGACGGT+GGG | 0.580234 | 4:+12556248 | MsG0480018965.01.T01:CDS |
| GAGGAAGACGAAGGACATGA+CGG | 0.581220 | 4:+12556276 | MsG0480018965.01.T01:CDS |
| GTTTAAGATCGGCGTAGACA+AGG | 0.581591 | 4:-12555414 | None:intergenic |
| GAAGCAAAATCCATTGGCAT+AGG | 0.584255 | 4:-12556009 | None:intergenic |
| TATCAAGATCATTGAGAAAG+CGG | 0.584982 | 4:+12555483 | MsG0480018965.01.T01:CDS |
| CGTCAAAGGCGAGGATGCCG+AGG | 0.586508 | 4:-12555156 | None:intergenic |
| TGACACAGTCCGGTGGCATG+GGG | 0.591371 | 4:+12556368 | MsG0480018965.01.T01:CDS |
| AAACCCAAAACCAAAGAGCA+TGG | 0.593286 | 4:-12555830 | None:intergenic |
| AAGATTGAGGATGAAGGTAA+AGG | 0.594217 | 4:+12556227 | MsG0480018965.01.T01:CDS |
| ACCGGGAAGATTGAGGATGA+AGG | 0.596287 | 4:+12556221 | MsG0480018965.01.T01:CDS |
| TGGTGATTTCTTCGTCGGAG+AGG | 0.596626 | 4:-12555219 | None:intergenic |
| GATGGAATGGCTGTCTCCGG+TGG | 0.597624 | 4:+12556341 | MsG0480018965.01.T01:CDS |
| CTCGCCCCACCATCAACAGT+GGG | 0.598648 | 4:+12556087 | MsG0480018965.01.T01:CDS |
| AGGAAGACGAAGGACATGAC+GGG | 0.601959 | 4:+12556277 | MsG0480018965.01.T01:CDS |
| CGCGCCCGCGACAGTTGGAG+AGG | 0.602717 | 4:+12556170 | MsG0480018965.01.T01:CDS |
| GTGTATATTGGTGTGAGAGA+AGG | 0.603744 | 4:+12556514 | MsG0480018965.01.T01:CDS |
| GACTGCCATAGTGGAAGTGT+TGG | 0.604067 | 4:+12556479 | MsG0480018965.01.T01:CDS |
| GCCCCACCATCAACAGTGGG+TGG | 0.608490 | 4:+12556090 | MsG0480018965.01.T01:CDS |
| GCTCGCCCCACCATCAACAG+TGG | 0.608921 | 4:+12556086 | MsG0480018965.01.T01:CDS |
| CATGAGGTTGTAAAATCCAA+AGG | 0.609869 | 4:+12555250 | MsG0480018965.01.T01:CDS |
| GGAACTGAGAAAATGATGAA+TGG | 0.609978 | 4:+12556042 | MsG0480018965.01.T01:CDS |
| GTTGTGATCTTGGCTTAGCG+AGG | 0.614453 | 4:+12555386 | MsG0480018965.01.T01:CDS |
| GCTGGCCGAAGGATGGCGGG+AGG | 0.618111 | 4:+12556305 | MsG0480018965.01.T01:CDS |
| GAGGGAGATGAGGCGACACA+TGG | 0.620252 | 4:-12555188 | None:intergenic |
| GGTGTTCCAGAAGGCAACAA+TGG | 0.622560 | 4:-12555855 | None:intergenic |
| AAACGGTTGGGATCATGGCA+AGG | 0.623863 | 4:+12555728 | MsG0480018965.01.T01:CDS |
| ACAATTCACGGTGTTCCAGA+AGG | 0.624994 | 4:-12555864 | None:intergenic |
| AGTTGGAGAGGACGCACGTG+AGG | 0.630790 | 4:+12556182 | MsG0480018965.01.T01:CDS |
| GTCAAAGGCGAGGATGCCGA+GGG | 0.638397 | 4:-12555155 | None:intergenic |
| GCCTATACGGGAGACAGTAA+CGG | 0.642874 | 4:-12555356 | None:intergenic |
| TGGTCGTGGCTACCATGTCA+CGG | 0.644384 | 4:+12555104 | None:intergenic |
| AGGCAAAGCTAAAGGGACGG+TGG | 0.644739 | 4:+12556247 | MsG0480018965.01.T01:CDS |
| TCTTACCGGCGTCAAAGGCG+AGG | 0.655393 | 4:-12555165 | None:intergenic |
| TGGCGCATGACACAGTCCGG+TGG | 0.657914 | 4:+12556361 | MsG0480018965.01.T01:CDS |
| AAGATTCGAGACAAAGCCTA+CGG | 0.662914 | 4:+12556410 | MsG0480018965.01.T01:CDS |
| GTCTACGCCGATCTTAAACA+AGG | 0.667452 | 4:+12555418 | MsG0480018965.01.T01:CDS |
| GTCTGCAGAAGCATCGCCGT+AGG | 0.681125 | 4:-12556426 | None:intergenic |
| CGGTGTTGTCGAGCTCCTCG+AGG | 0.682713 | 4:-12555333 | None:intergenic |
| TAAAGGCAAAGCTAAAGGGA+CGG | 0.687543 | 4:+12556244 | MsG0480018965.01.T01:CDS |
| GGAAGCACTCCAGAAGCGTG+TGG | 0.698720 | 4:+12555924 | MsG0480018965.01.T01:CDS |
| CGGTGTTTCAGAATGGTACG+AGG | 0.698741 | 4:+12555903 | MsG0480018965.01.T01:CDS |
| TGGGCGAAAGAGGAAGACGA+AGG | 0.704118 | 4:+12556267 | MsG0480018965.01.T01:CDS |
| AATCACCAAGCTCCTCCATG+AGG | 0.706734 | 4:+12555234 | MsG0480018965.01.T01:CDS |
| CATGGCAGAATAGAGACCAG+AGG | 0.720520 | 4:-12555524 | None:intergenic |
| TATACGGGAGACAGTAACGG+CGG | 0.803788 | 4:-12555353 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAATTATGATACAATTCA+CGG | - | Chr4:12555879-12555898 | None:intergenic | 20.0% |
| !! | TTGTATCATAATTCAAATCA+CGG | + | Chr4:12555883-12555902 | MsG0480018965.01.T01:CDS | 20.0% |
| ! | ATTTCAAGGAAACATCATTA+TGG | + | Chr4:12555689-12555708 | MsG0480018965.01.T01:CDS | 25.0% |
| ! | GAAACAAACATTTGACAAAA+CGG | + | Chr4:12555711-12555730 | MsG0480018965.01.T01:CDS | 25.0% |
| ! | GATGAATGGTAATAATGATA+AGG | + | Chr4:12556056-12556075 | MsG0480018965.01.T01:CDS | 25.0% |
| ! | TCATTGAAATATTCCATGTT+TGG | - | Chr4:12555637-12555656 | None:intergenic | 25.0% |
| !! | AATTACACCTTGTTTAAGAT+CGG | - | Chr4:12555428-12555447 | None:intergenic | 25.0% |
| AAACATTTGACAAAACGGTT+GGG | + | Chr4:12555716-12555735 | MsG0480018965.01.T01:CDS | 30.0% | |
| AAAGCAAGTGCAAAATTTCA+AGG | + | Chr4:12555675-12555694 | MsG0480018965.01.T01:CDS | 30.0% | |
| ATTAATGTATGCTCCGAAAA+CGG | - | Chr4:12555785-12555804 | None:intergenic | 30.0% | |
| ATTCAAATATGTCACACCTT+TGG | - | Chr4:12555269-12555288 | None:intergenic | 30.0% | |
| CAACTAAACCTAATGTGATA+AGG | + | Chr4:12555974-12555993 | MsG0480018965.01.T01:CDS | 30.0% | |
| TATCAAGATCATTGAGAAAG+CGG | + | Chr4:12555483-12555502 | MsG0480018965.01.T01:CDS | 30.0% | |
| TTGAGAAACCTTATCACATT+AGG | - | Chr4:12555985-12556004 | None:intergenic | 30.0% | |
| ! | ATTAGGTTTAGTTGCTACTT+TGG | - | Chr4:12555968-12555987 | None:intergenic | 30.0% |
| !! | TTAGTTGCTACTTTGGAAAT+AGG | - | Chr4:12555961-12555980 | None:intergenic | 30.0% |
| AACAACAATTCCATGCTCTT+TGG | + | Chr4:12555820-12555839 | MsG0480018965.01.T01:CDS | 35.0% | |
| AAGATTGAGGATGAAGGTAA+AGG | + | Chr4:12556227-12556246 | MsG0480018965.01.T01:CDS | 35.0% | |
| AAGGTAAAGGCAAAGCTAAA+GGG | + | Chr4:12556240-12556259 | MsG0480018965.01.T01:CDS | 35.0% | |
| CAAACATTTGACAAAACGGT+TGG | + | Chr4:12555715-12555734 | MsG0480018965.01.T01:CDS | 35.0% | |
| CATGAGGTTGTAAAATCCAA+AGG | + | Chr4:12555250-12555269 | MsG0480018965.01.T01:CDS | 35.0% | |
| GACAACAACAACAACGTTAT+TGG | + | Chr4:12555584-12555603 | MsG0480018965.01.T01:CDS | 35.0% | |
| GACATTGCATTACTCTGATT+TGG | + | Chr4:12556446-12556465 | MsG0480018965.01.T01:CDS | 35.0% | |
| GGAACTGAGAAAATGATGAA+TGG | + | Chr4:12556042-12556061 | MsG0480018965.01.T01:CDS | 35.0% | |
| GTATGCTAATGTGATCCTAT+TGG | + | Chr4:12556131-12556150 | MsG0480018965.01.T01:CDS | 35.0% | |
| TAATTCTGCCATGTATTCCA+TGG | - | Chr4:12555545-12555564 | None:intergenic | 35.0% | |
| ! | CTTTGGATTTTACAACCTCA+TGG | - | Chr4:12555252-12555271 | None:intergenic | 35.0% |
| !! | AATTCCATGCTCTTTGGTTT+TGG | + | Chr4:12555826-12555845 | MsG0480018965.01.T01:CDS | 35.0% |
| !! | TTGGGTTGAGTTGTGTATAT+TGG | + | Chr4:12556502-12556521 | MsG0480018965.01.T01:CDS | 35.0% |
| !!! | ATTCCATGCTCTTTGGTTTT+GGG | + | Chr4:12555827-12555846 | MsG0480018965.01.T01:CDS | 35.0% |
| !!! | TTGTTGTCTTTTTTTCTCCG+CGG | - | Chr4:12555572-12555591 | None:intergenic | 35.0% |
| AAACCCAAAACCAAAGAGCA+TGG | - | Chr4:12555833-12555852 | None:intergenic | 40.0% | |
| AAGATTCGAGACAAAGCCTA+CGG | + | Chr4:12556410-12556429 | MsG0480018965.01.T01:CDS | 40.0% | |
| AGCCAAGATCACAACATTTC+TGG | - | Chr4:12555381-12555400 | None:intergenic | 40.0% | |
| CAAATCACGGTGTTTCAGAA+TGG | + | Chr4:12555896-12555915 | MsG0480018965.01.T01:CDS | 40.0% | |
| CTATTCTGCCATGGAATACA+TGG | + | Chr4:12555534-12555553 | MsG0480018965.01.T01:CDS | 40.0% | |
| GAAGCAAAATCCATTGGCAT+AGG | - | Chr4:12556012-12556031 | None:intergenic | 40.0% | |
| GAAGGTAAAGGCAAAGCTAA+AGG | + | Chr4:12556239-12556258 | MsG0480018965.01.T01:CDS | 40.0% | |
| GGAATACATGGCAGAATTAG+AGG | + | Chr4:12555546-12555565 | MsG0480018965.01.T01:CDS | 40.0% | |
| GTGTATATTGGTGTGAGAGA+AGG | + | Chr4:12556514-12556533 | MsG0480018965.01.T01:CDS | 40.0% | |
| TAAAGGCAAAGCTAAAGGGA+CGG | + | Chr4:12556244-12556263 | MsG0480018965.01.T01:CDS | 40.0% | |
| TCTCAACAATCCTATGCCAA+TGG | + | Chr4:12555999-12556018 | MsG0480018965.01.T01:CDS | 40.0% | |
| ! | GAGGAGGAAATTTTCTTGGT+TGG | - | Chr4:12555293-12555312 | None:intergenic | 40.0% |
| ! | GCAAGAATATGCTCCGTTTT+CGG | + | Chr4:12555769-12555788 | MsG0480018965.01.T01:CDS | 40.0% |
| ! | TGGATTTTACAACCTCATGG+AGG | - | Chr4:12555249-12555268 | None:intergenic | 40.0% |
| !! | ACAACATTTCTGGCCTATAC+GGG | - | Chr4:12555371-12555390 | None:intergenic | 40.0% |
| !! | ATGCCAATGGATTTTGCTTC+TGG | + | Chr4:12556012-12556031 | MsG0480018965.01.T01:CDS | 40.0% |
| !! | CACAACATTTCTGGCCTATA+CGG | - | Chr4:12555372-12555391 | None:intergenic | 40.0% |
| !! | GCATTACTCTGATTTGGAGA+AGG | + | Chr4:12556452-12556471 | MsG0480018965.01.T01:CDS | 40.0% |
| ACAATTCACGGTGTTCCAGA+AGG | - | Chr4:12555867-12555886 | None:intergenic | 45.0% | |
| ACCAAGTCTCAAGCCAAACA+TGG | + | Chr4:12555621-12555640 | MsG0480018965.01.T01:CDS | 45.0% | |
| ACCTTCATCCTCAATCTTCC+CGG | - | Chr4:12556225-12556244 | None:intergenic | 45.0% | |
| AGAATAGAGACCAGAGGTTG+CGG | - | Chr4:12555521-12555540 | None:intergenic | 45.0% | |
| ATAGAGCTCCGAGAGTTGTA+TGG | - | Chr4:12555466-12555485 | None:intergenic | 45.0% | |
| CGACCAGAAGCAAAATCCAT+TGG | - | Chr4:12556018-12556037 | None:intergenic | 45.0% | |
| GAAAGCTGCCATACAACTCT+CGG | + | Chr4:12555455-12555474 | MsG0480018965.01.T01:CDS | 45.0% | |
| GAGAGTTGTATGGCAGCTTT+CGG | - | Chr4:12555456-12555475 | None:intergenic | 45.0% | |
| GGCCAGAAATGTTGTGATCT+TGG | + | Chr4:12555376-12555395 | MsG0480018965.01.T01:CDS | 45.0% | |
| GTCTACGCCGATCTTAAACA+AGG | + | Chr4:12555418-12555437 | MsG0480018965.01.T01:CDS | 45.0% | |
| GTTTGACCATTGTTGCCTTC+TGG | + | Chr4:12555849-12555868 | MsG0480018965.01.T01:CDS | 45.0% | |
| TGACAAAACGGTTGGGATCA+TGG | + | Chr4:12555723-12555742 | MsG0480018965.01.T01:CDS | 45.0% | |
| ! | GAGCTTGGTGATTTCTTCGT+CGG | - | Chr4:12555227-12555246 | None:intergenic | 45.0% |
| ! | GATTTTGCTTCTGGTCGTGA+CGG | + | Chr4:12556021-12556040 | MsG0480018965.01.T01:CDS | 45.0% |
| ! | GGGTGAGGAGGAAATTTTCT+TGG | - | Chr4:12555297-12555316 | None:intergenic | 45.0% |
| ! | GTTTAAGATCGGCGTAGACA+AGG | - | Chr4:12555417-12555436 | None:intergenic | 45.0% |
| !! | CCATAGTGGAAGTGTTGGTT+GGG | + | Chr4:12556484-12556503 | MsG0480018965.01.T01:CDS | 45.0% |
| !! | TCCATGTTTGGCTTGAGACT+TGG | - | Chr4:12555625-12555644 | None:intergenic | 45.0% |
| !! | TGCTACTTTGGAAATAGGCC+CGG | - | Chr4:12555956-12555975 | None:intergenic | 45.0% |
| AAACGGTTGGGATCATGGCA+AGG | + | Chr4:12555728-12555747 | MsG0480018965.01.T01:CDS | 50.0% | |
| AAACTCATCTCCGCAACCTC+TGG | + | Chr4:12555508-12555527 | MsG0480018965.01.T01:CDS | 50.0% | |
| AATCACCAAGCTCCTCCATG+AGG | + | Chr4:12555234-12555253 | MsG0480018965.01.T01:CDS | 50.0% | |
| ACCGGGAAGATTGAGGATGA+AGG | + | Chr4:12556221-12556240 | MsG0480018965.01.T01:CDS | 50.0% | |
| AGATGCTACCGGGAAGATTG+AGG | + | Chr4:12556214-12556233 | MsG0480018965.01.T01:CDS | 50.0% | |
| AGGAAGACGAAGGACATGAC+GGG | + | Chr4:12556277-12556296 | MsG0480018965.01.T01:CDS | 50.0% | |
| CATCAACAGTGGGTGGAGTT+GGG | + | Chr4:12556097-12556116 | MsG0480018965.01.T01:CDS | 50.0% | |
| CATGGCAGAATAGAGACCAG+AGG | - | Chr4:12555527-12555546 | None:intergenic | 50.0% | |
| CCCAACCAACACTTCCACTA+TGG | - | Chr4:12556487-12556506 | None:intergenic | 50.0% | |
| CGGTGTTTCAGAATGGTACG+AGG | + | Chr4:12555903-12555922 | MsG0480018965.01.T01:CDS | 50.0% | |
| CTCTGGTCTCTATTCTGCCA+TGG | + | Chr4:12555525-12555544 | MsG0480018965.01.T01:CDS | 50.0% | |
| GAGGAAGACGAAGGACATGA+CGG | + | Chr4:12556276-12556295 | MsG0480018965.01.T01:CDS | 50.0% | |
| GCCTATACGGGAGACAGTAA+CGG | - | Chr4:12555359-12555378 | None:intergenic | 50.0% | |
| GCCTTATACGAGATGCTACC+GGG | + | Chr4:12556204-12556223 | MsG0480018965.01.T01:CDS | 50.0% | |
| GGTGATTTCTTCGTCGGAGA+GGG | - | Chr4:12555221-12555240 | None:intergenic | 50.0% | |
| GGTGTTCCAGAAGGCAACAA+TGG | - | Chr4:12555858-12555877 | None:intergenic | 50.0% | |
| GTTGTGATCTTGGCTTAGCG+AGG | + | Chr4:12555386-12555405 | MsG0480018965.01.T01:CDS | 50.0% | |
| TACAACCTCATGGAGGAGCT+TGG | - | Chr4:12555242-12555261 | None:intergenic | 50.0% | |
| TATACGGGAGACAGTAACGG+CGG | - | Chr4:12555356-12555375 | None:intergenic | 50.0% | |
| TCCCGGTAGCATCTCGTATA+AGG | - | Chr4:12556208-12556227 | None:intergenic | 50.0% | |
| TGGTGATTTCTTCGTCGGAG+AGG | - | Chr4:12555222-12555241 | None:intergenic | 50.0% | |
| ! | GACTGCCATAGTGGAAGTGT+TGG | + | Chr4:12556479-12556498 | MsG0480018965.01.T01:CDS | 50.0% |
| ! | GGCCTTATACGAGATGCTAC+CGG | + | Chr4:12556203-12556222 | MsG0480018965.01.T01:CDS | 50.0% |
| !! | GCCATAGTGGAAGTGTTGGT+TGG | + | Chr4:12556483-12556502 | MsG0480018965.01.T01:CDS | 50.0% |
| AATGCCTTTCCCCATGCCAC+CGG | - | Chr4:12556380-12556399 | None:intergenic | 55.0% | |
| AGGCAAAGCTAAAGGGACGG+TGG | + | Chr4:12556247-12556266 | MsG0480018965.01.T01:CDS | 55.0% | |
| ATGACACAGTCCGGTGGCAT+GGG | + | Chr4:12556367-12556386 | MsG0480018965.01.T01:CDS | 55.0% | |
| CATGGCAGAATTAGAGGCCG+CGG | + | Chr4:12555552-12555571 | MsG0480018965.01.T01:CDS | 55.0% | |
| CCAACTCCACCCACTGTTGA+TGG | - | Chr4:12556099-12556118 | None:intergenic | 55.0% | |
| CCATCAACAGTGGGTGGAGT+TGG | + | Chr4:12556096-12556115 | MsG0480018965.01.T01:CDS | 55.0% | |
| GAAGGCAGAGACTGCCATAG+TGG | + | Chr4:12556470-12556489 | MsG0480018965.01.T01:CDS | 55.0% | |
| GCCGTTACTGTCTCCCGTAT+AGG | + | Chr4:12555355-12555374 | MsG0480018965.01.T01:CDS | 55.0% | |
| GCTGATGGAATGGCTGTCTC+CGG | + | Chr4:12556338-12556357 | MsG0480018965.01.T01:CDS | 55.0% | |
| GGAGACAACGCTCTGCCAAT+AGG | - | Chr4:12556149-12556168 | None:intergenic | 55.0% | |
| GGCAAAGCTAAAGGGACGGT+GGG | + | Chr4:12556248-12556267 | MsG0480018965.01.T01:CDS | 55.0% | |
| GGGAGTTGTAGAGGGAGATG+AGG | - | Chr4:12555201-12555220 | None:intergenic | 55.0% | |
| GTCGGAGAGGGAGTTGTAGA+GGG | - | Chr4:12555209-12555228 | None:intergenic | 55.0% | |
| TGGGCGAAAGAGGAAGACGA+AGG | + | Chr4:12556267-12556286 | MsG0480018965.01.T01:CDS | 55.0% | |
| ! | ACTCCACCCACTGTTGATGG+TGG | - | Chr4:12556096-12556115 | None:intergenic | 55.0% |
| ! | AGAAGCGTGTGGTGAAGTCC+GGG | + | Chr4:12555935-12555954 | MsG0480018965.01.T01:CDS | 55.0% |
| ! | CAGAAGCGTGTGGTGAAGTC+CGG | + | Chr4:12555934-12555953 | MsG0480018965.01.T01:CDS | 55.0% |
| ! | CATGGTCTTACCGGCGTCAA+AGG | - | Chr4:12555173-12555192 | None:intergenic | 55.0% |
| ! | GAGGCGACACATGGTCTTAC+CGG | - | Chr4:12555182-12555201 | None:intergenic | 55.0% |
| ! | GTGGAGTTGGGCTTGCTTTG+AGG | + | Chr4:12556109-12556128 | MsG0480018965.01.T01:CDS | 55.0% |
| !! | CTCCACCCACTGTTGATGGT+GGG | - | Chr4:12556095-12556114 | None:intergenic | 55.0% |
| !! | GTGGCATGGGGAAAGGCATT+TGG | + | Chr4:12556380-12556399 | MsG0480018965.01.T01:CDS | 55.0% |
| !! | TCCACCCACTGTTGATGGTG+GGG | - | Chr4:12556094-12556113 | None:intergenic | 55.0% |
| AAAGGGACGGTGGGCGAAAG+AGG | + | Chr4:12556257-12556276 | MsG0480018965.01.T01:CDS | 60.0% | |
| AGTTGGAGAGGACGCACGTG+AGG | + | Chr4:12556182-12556201 | MsG0480018965.01.T01:CDS | 60.0% | |
| ATTCGCTGGCCGAAGGATGG+CGG | + | Chr4:12556301-12556320 | MsG0480018965.01.T01:CDS | 60.0% | |
| CATGACACAGTCCGGTGGCA+TGG | + | Chr4:12556366-12556385 | MsG0480018965.01.T01:CDS | 60.0% | |
| CGGACTTCACCACACGCTTC+TGG | - | Chr4:12555936-12555955 | None:intergenic | 60.0% | |
| CGGTGGAGGAGCTGATGGAA+TGG | + | Chr4:12556328-12556347 | MsG0480018965.01.T01:CDS | 60.0% | |
| CGTCGGAGAGGGAGTTGTAG+AGG | - | Chr4:12555210-12555229 | None:intergenic | 60.0% | |
| CTCGCCCCACCATCAACAGT+GGG | + | Chr4:12556087-12556106 | MsG0480018965.01.T01:CDS | 60.0% | |
| GAGGGAGATGAGGCGACACA+TGG | - | Chr4:12555191-12555210 | None:intergenic | 60.0% | |
| GATGGAATGGCTGTCTCCGG+TGG | + | Chr4:12556341-12556360 | MsG0480018965.01.T01:CDS | 60.0% | |
| GTCAAAGGCGAGGATGCCGA+GGG | - | Chr4:12555158-12555177 | None:intergenic | 60.0% | |
| TCTTACCGGCGTCAAAGGCG+AGG | - | Chr4:12555168-12555187 | None:intergenic | 60.0% | |
| TGACACAGTCCGGTGGCATG+GGG | + | Chr4:12556368-12556387 | MsG0480018965.01.T01:CDS | 60.0% | |
| TGCGTCCTCTCCAACTGTCG+CGG | - | Chr4:12556178-12556197 | None:intergenic | 60.0% | |
| !! | AGGACATGACGGGCATTCGC+TGG | + | Chr4:12556287-12556306 | MsG0480018965.01.T01:CDS | 60.0% |
| !! | GGAAGCACTCCAGAAGCGTG+TGG | + | Chr4:12555924-12555943 | MsG0480018965.01.T01:CDS | 60.0% |
| !! | GTCTGCAGAAGCATCGCCGT+AGG | - | Chr4:12556429-12556448 | None:intergenic | 60.0% |
| ACGGCGTCCCAAGACGATGC+CGG | + | Chr4:12555123-12555142 | MsG0480018965.01.T01:CDS | 65.0% | |
| ATGCCGAGGGTTTCGGGCTC+CGG | - | Chr4:12555145-12555164 | None:intergenic | 65.0% | |
| ATGCCGGAGCCCGAAACCCT+CGG | + | Chr4:12555139-12555158 | MsG0480018965.01.T01:CDS | 65.0% | |
| CAGTCCGGTGGCATGGGGAA+AGG | + | Chr4:12556373-12556392 | MsG0480018965.01.T01:CDS | 65.0% | |
| CGGACTGTGTCATGCGCCAC+CGG | - | Chr4:12556360-12556379 | None:intergenic | 65.0% | |
| CGGTGGCGCATGACACAGTC+CGG | + | Chr4:12556358-12556377 | MsG0480018965.01.T01:CDS | 65.0% | |
| CGTCAAAGGCGAGGATGCCG+AGG | - | Chr4:12555159-12555178 | None:intergenic | 65.0% | |
| GCCCCACCATCAACAGTGGG+TGG | + | Chr4:12556090-12556109 | MsG0480018965.01.T01:CDS | 65.0% | |
| GCGAGGATGCCGAGGGTTTC+GGG | - | Chr4:12555151-12555170 | None:intergenic | 65.0% | |
| GCGTCCTCTCCAACTGTCGC+GGG | - | Chr4:12556177-12556196 | None:intergenic | 65.0% | |
| GCTCGCCCCACCATCAACAG+TGG | + | Chr4:12556086-12556105 | MsG0480018965.01.T01:CDS | 65.0% | |
| GGCATCCTCGCCTTTGACGC+CGG | + | Chr4:12555160-12555179 | MsG0480018965.01.T01:CDS | 65.0% | |
| GGCATTCGCTGGCCGAAGGA+TGG | + | Chr4:12556298-12556317 | MsG0480018965.01.T01:CDS | 65.0% | |
| GGCGAGGATGCCGAGGGTTT+CGG | - | Chr4:12555152-12555171 | None:intergenic | 65.0% | |
| TCGGGCTCCGGCATCGTCTT+GGG | - | Chr4:12555133-12555152 | None:intergenic | 65.0% | |
| TGGCGCATGACACAGTCCGG+TGG | + | Chr4:12556361-12556380 | MsG0480018965.01.T01:CDS | 65.0% | |
| TTCGCTGGCCGAAGGATGGC+GGG | + | Chr4:12556302-12556321 | MsG0480018965.01.T01:CDS | 65.0% | |
| TTCGGGCTCCGGCATCGTCT+TGG | - | Chr4:12555134-12555153 | None:intergenic | 65.0% | |
| ! | GTCGAGCTCCTCGAGGCGTT+CGG | - | Chr4:12555329-12555348 | None:intergenic | 65.0% |
| !! | CGGTGTTGTCGAGCTCCTCG+AGG | - | Chr4:12555336-12555355 | None:intergenic | 65.0% |
| CACCGCCTCCCGCCATCCTT+CGG | - | Chr4:12556313-12556332 | None:intergenic | 70.0% | |
| GACGGGCATTCGCTGGCCGA+AGG | + | Chr4:12556294-12556313 | MsG0480018965.01.T01:CDS | 70.0% | |
| GGAGGCGGTGGAGGAGCTGA+TGG | + | Chr4:12556323-12556342 | MsG0480018965.01.T01:CDS | 70.0% | |
| ! | CTCCTCGAGGCGTTCGGCAG+CGG | - | Chr4:12555323-12555342 | None:intergenic | 70.0% |
| CGCGCCCGCGACAGTTGGAG+AGG | + | Chr4:12556170-12556189 | MsG0480018965.01.T01:CDS | 75.0% | |
| CTCCAACTGTCGCGGGCGCG+TGG | - | Chr4:12556170-12556189 | None:intergenic | 75.0% | |
| CTCCACGCGCCCGCGACAGT+TGG | + | Chr4:12556165-12556184 | MsG0480018965.01.T01:CDS | 75.0% | |
| GTTCGGCAGCGGCGAGGGTG+AGG | - | Chr4:12555312-12555331 | None:intergenic | 75.0% | |
| ! | GAGGCGTTCGGCAGCGGCGA+GGG | - | Chr4:12555317-12555336 | None:intergenic | 75.0% |
| !! | AGGATGGCGGGAGGCGGTGG+AGG | + | Chr4:12556314-12556333 | MsG0480018965.01.T01:CDS | 75.0% |
| !! | CGAAGGATGGCGGGAGGCGG+TGG | + | Chr4:12556311-12556330 | MsG0480018965.01.T01:CDS | 75.0% |
| !! | GCTGGCCGAAGGATGGCGGG+AGG | + | Chr4:12556305-12556324 | MsG0480018965.01.T01:CDS | 75.0% |
| !! | GGCCGAAGGATGGCGGGAGG+CGG | + | Chr4:12556308-12556327 | MsG0480018965.01.T01:CDS | 75.0% |
| ! | CGCCGCTGCCGAACGCCTCG+AGG | + | Chr4:12555318-12555337 | MsG0480018965.01.T01:CDS | 80.0% |
| ! | CGGCAGCGGCGAGGGTGAGG+AGG | - | Chr4:12555309-12555328 | None:intergenic | 80.0% |
| !! | CGAGGCGTTCGGCAGCGGCG+AGG | - | Chr4:12555318-12555337 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 12555118 | 12556542 | 12555118 | ID=MsG0480018965.01;Name=MsG0480018965.01 |
| Chr4 | mRNA | 12555118 | 12556542 | 12555118 | ID=MsG0480018965.01.T01;Parent=MsG0480018965.01;Name=MsG0480018965.01.T01;_AED=0.20;_eAED=0.20;_QI=0|-1|0|1|-1|1|1|0|474 |
| Chr4 | exon | 12555118 | 12556542 | 12555118 | ID=MsG0480018965.01.T01:exon:7796;Parent=MsG0480018965.01.T01 |
| Chr4 | CDS | 12555118 | 12556542 | 12555118 | ID=MsG0480018965.01.T01:cds;Parent=MsG0480018965.01.T01 |
| Gene Sequence |
| Protein sequence |
