AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030961.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030961.01.T01 MTR_6g015320 95.595 454 20 0 6 459 4 457 0.0 894
MsG0680030961.01.T01 MTR_6g015315 80.879 455 80 3 9 459 4 455 0.0 725
MsG0680030961.01.T01 MTR_6g015310 72.113 355 55 2 80 434 23 333 4.32e-179 504
MsG0680030961.01.T01 MTR_6g015815 55.603 464 188 9 8 459 6 463 7.49e-174 496
MsG0680030961.01.T01 MTR_6g015850 56.616 461 183 8 9 459 7 460 8.65e-171 488
MsG0680030961.01.T01 MTR_6g015830 54.526 464 191 9 9 459 7 463 6.49e-166 476
MsG0680030961.01.T01 MTR_7g014330 46.004 463 228 9 11 458 3 458 1.54e-140 411
MsG0680030961.01.T01 MTR_7g014230 45.435 460 229 10 11 455 5 457 1.99e-137 403
MsG0680030961.01.T01 MTR_7g014250 44.276 463 236 10 11 458 3 458 2.13e-131 387
MsG0680030961.01.T01 MTR_7g014200 41.845 466 250 10 8 456 7 468 1.79e-111 337
MsG0680030961.01.T01 MTR_7g014160 40.928 474 246 14 9 456 8 473 4.64e-106 323
MsG0680030961.01.T01 MTR_7g013850 39.381 485 260 9 1 456 1 480 3.30e-104 319
MsG0680030961.01.T01 MTR_7g014610 38.784 477 259 12 9 458 7 477 2.10e-102 314
MsG0680030961.01.T01 MTR_7g014360 42.228 386 199 7 78 458 22 388 6.39e-100 305
MsG0680030961.01.T01 MTR_7g014620 38.158 456 234 10 21 456 5 432 1.80e-88 277
MsG0680030961.01.T01 MTR_2g089765 32.083 480 290 11 7 459 15 485 2.62e-70 231
MsG0680030961.01.T01 MTR_2g089670 33.186 452 265 12 27 456 41 477 5.96e-66 219
MsG0680030961.01.T01 MTR_8g012750 32.618 466 273 12 25 459 20 475 1.25e-65 219
MsG0680030961.01.T01 MTR_3g028210 30.498 482 297 11 1 459 1 467 1.03e-64 216
MsG0680030961.01.T01 MTR_2g089650 31.098 492 284 15 1 461 1 468 5.04e-64 214
MsG0680030961.01.T01 MTR_7g014630 41.155 277 150 7 8 273 7 281 6.35e-61 203
MsG0680030961.01.T01 MTR_2g089755 31.398 465 262 13 31 460 37 479 5.64e-60 204
MsG0680030961.01.T01 MTR_2g089735 31.532 444 260 12 44 460 39 465 7.11e-59 201
MsG0680030961.01.T01 MTR_3g087640 29.979 477 283 15 18 460 17 476 7.92e-58 198
MsG0680030961.01.T01 MTR_7g014310 38.532 327 151 9 116 441 31 308 5.21e-57 191
MsG0680030961.01.T01 MTR_7g015860 30.753 478 265 12 12 452 8 456 1.47e-50 178
MsG0680030961.01.T01 MTR_7g014180 47.399 173 88 2 4 173 1 173 7.19e-47 160
MsG0680030961.01.T01 MTR_2g089665 30.000 430 191 12 13 433 7 335 2.46e-40 148
MsG0680030961.01.T01 MTR_7g014670 39.785 186 103 6 277 457 79 260 1.34e-32 125
MsG0680030961.01.T01 MTR_3g435300 30.627 271 166 7 18 275 11 272 1.02e-31 122
MsG0680030961.01.T01 MTR_7g014205 39.098 133 68 2 292 424 1 120 4.40e-24 97.1
MsG0680030961.01.T01 MTR_2g064495 23.515 421 277 15 47 452 39 429 4.23e-23 101
MsG0680030961.01.T01 MTR_7g014210 43.966 116 62 2 311 425 24 137 1.41e-22 94.4
MsG0680030961.01.T01 MTR_2g105330 23.515 421 277 15 47 452 39 429 1.62e-22 99.8
MsG0680030961.01.T01 MTR_8g075610 23.373 415 280 15 47 451 30 416 2.31e-22 99.4
MsG0680030961.01.T01 MTR_4g007540 23.810 420 270 16 47 448 39 426 6.04e-22 98.2
MsG0680030961.01.T01 MTR_3g026310 25.000 464 299 17 8 449 2 438 1.12e-19 91.7
MsG0680030961.01.T01 MTR_4g094842 25.240 313 200 9 145 449 152 438 8.80e-19 89.0
MsG0680030961.01.T01 MTR_3g088420 24.810 395 252 12 31 411 24 387 8.86e-18 85.9
MsG0680030961.01.T01 MTR_8g096530 25.902 305 200 7 148 448 140 422 7.50e-17 82.8
MsG0680030961.01.T01 MTR_3g049150 24.471 425 267 17 64 459 51 450 1.68e-16 82.0
MsG0680030961.01.T01 MTR_4g022825 26.449 276 175 9 145 411 138 394 1.83e-16 81.6
MsG0680030961.01.T01 MTR_4g127650 22.737 475 311 14 10 456 10 456 9.01e-16 79.7
MsG0680030961.01.T01 MTR_4g022800 27.622 286 175 11 139 411 130 396 1.36e-15 79.0
MsG0680030961.01.T01 MTR_4g022720 24.458 323 205 11 139 449 130 425 6.44e-15 77.0
MsG0680030961.01.T01 MTR_3g026950 23.810 420 271 15 62 452 48 447 1.05e-14 76.3
MsG0680030961.01.T01 MTR_7g014340 49.275 69 31 2 11 76 3 70 1.20e-14 70.1
MsG0680030961.01.T01 MTR_4g022290 23.218 435 259 18 6 411 8 396 1.21e-14 76.3
MsG0680030961.01.T01 MTR_8g079710 23.000 400 257 14 31 411 29 396 1.41e-14 75.9
MsG0680030961.01.T01 MTR_7g014220 54.839 62 27 1 25 86 12 72 1.54e-14 69.3
MsG0680030961.01.T01 MTR_5g026320 26.406 409 246 19 43 432 52 424 2.30e-14 75.5
MsG0680030961.01.T01 MTR_7g086000 19.588 485 325 14 9 457 3 458 6.01e-14 73.9
MsG0680030961.01.T01 MTR_3g101960 22.811 434 290 15 31 445 29 436 3.98e-13 71.6
MsG0680030961.01.T01 MTR_4g013050 21.981 414 242 12 68 456 53 410 4.80e-13 70.9
MsG0680030961.01.T01 MTR_7g056087 23.364 428 275 17 49 454 41 437 8.24e-13 70.5
MsG0680030961.01.T01 MTR_7g084940 21.888 466 300 15 10 452 16 440 8.50e-13 70.5
MsG0680030961.01.T01 MTR_7g084910 25.301 332 207 12 54 366 48 357 9.83e-13 70.1
MsG0680030961.01.T01 MTR_4g022760 23.861 373 227 14 23 371 16 355 1.07e-12 69.7
MsG0680030961.01.T01 MTR_7g085990 23.677 359 229 12 131 459 117 460 1.35e-12 70.1
MsG0680030961.01.T01 MTR_2g089745 45.714 70 38 0 390 459 11 80 1.51e-12 63.5
MsG0680030961.01.T01 MTR_5g084870 23.101 316 212 9 142 452 129 418 1.77e-12 69.3
MsG0680030961.01.T01 MTR_4g097090 22.708 480 320 17 4 456 1 456 2.39e-12 68.9
MsG0680030961.01.T01 MTR_8g079970 22.122 443 291 16 24 448 14 420 2.71e-12 68.9
MsG0680030961.01.T01 MTR_3g435290 31.897 116 73 2 345 460 12 121 4.32e-12 63.5
MsG0680030961.01.T01 MTR_7g085930 24.090 357 230 11 131 459 121 464 2.19e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030961.01.T01 AT5G39090 35.870 460 274 10 5 457 3 448 9.98e-89 278
MsG0680030961.01.T01 AT5G39050 35.941 473 268 14 8 457 8 468 6.02e-85 269
MsG0680030961.01.T01 AT3G29635 36.242 447 251 14 28 457 26 455 6.76e-82 260
MsG0680030961.01.T01 AT3G29590 33.839 461 277 13 8 457 6 449 2.40e-80 256
MsG0680030961.01.T01 AT3G29680 35.307 456 274 12 10 457 6 448 7.95e-80 255
MsG0680030961.01.T01 AT5G39080 33.262 469 275 15 8 452 3 457 1.76e-78 252
MsG0680030961.01.T01 AT3G29670 34.475 438 266 8 29 458 27 451 4.40e-78 250
MsG0680030961.01.T01 AT5G61160 30.786 458 294 11 9 454 2 448 3.86e-76 245
MsG0680030961.01.T01 AT1G03940 31.847 471 283 15 11 457 9 465 2.89e-61 207
MsG0680030961.01.T01 AT1G03495 33.837 331 191 11 20 332 19 339 1.08e-40 149
MsG0680030961.01.T01 AT5G23940 25.629 437 286 15 29 446 23 439 5.98e-23 101
MsG0680030961.01.T01 AT3G29720 34.426 183 109 6 105 283 26 201 4.73e-21 92.0
MsG0680030961.01.T01 AT5G48930 25.223 337 221 11 130 454 115 432 7.17e-21 95.1
MsG0680030961.01.T01 AT3G29690 31.410 156 98 3 304 458 33 180 3.98e-20 88.2
MsG0680030961.01.T01 AT2G19070 23.125 480 304 17 10 456 4 451 3.21e-19 90.1
MsG0680030961.01.T01 AT3G48720 25.117 426 264 17 44 452 41 428 2.35e-18 87.4
MsG0680030961.01.T01 AT3G26040 24.471 425 238 15 65 460 56 426 9.73e-13 70.5
MsG0680030961.01.T01 AT5G63560 22.753 356 224 13 68 408 61 380 3.19e-12 68.6
MsG0680030961.01.T01 AT5G07850 23.487 413 286 11 47 448 49 442 1.28e-11 67.0
MsG0680030961.01.T01 AT5G38130 23.797 395 262 11 62 441 73 443 1.36e-11 67.0
MsG0680030961.01.T01 AT5G67160 25.614 285 181 8 144 426 139 394 1.68e-11 66.2

Find 81 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTAATGCAAATTATTT+TGG 0.039056 6:-12212610 MsG0680030961.01.T01:CDS
CCAAAATAATTTGCATTAAT+TGG 0.091109 6:+12212610 None:intergenic
TGTTAAATGGTTTGGAAAAT+TGG 0.194705 6:-12212471 MsG0680030961.01.T01:CDS
AACAAATAATCGAAGCTTAA+AGG 0.216613 6:-12212869 MsG0680030961.01.T01:CDS
ATTTGACTCAGCTACAATTA+AGG 0.240047 6:+12213242 None:intergenic
GGGTTTATTAGTGCTCTTAA+AGG 0.251648 6:-12212529 MsG0680030961.01.T01:CDS
GTGCTTATTTGTTGTCATTA+GGG 0.252895 6:-12212708 MsG0680030961.01.T01:CDS
AATTGATGTGTTAGATGATT+TGG 0.257556 6:-12212503 MsG0680030961.01.T01:CDS
AAAGAAGTGGTTGATACATT+TGG 0.269259 6:+12213402 None:intergenic
GTGTTAGATGATTTGGAAAA+TGG 0.274871 6:-12212496 MsG0680030961.01.T01:CDS
TGTGCTTATTTGTTGTCATT+AGG 0.279006 6:-12212709 MsG0680030961.01.T01:CDS
TAACTTTCTTTGACACACTA+TGG 0.279069 6:-12213467 MsG0680030961.01.T01:CDS
ATCTAAGGTTGAAAATAAAA+AGG 0.282585 6:-12212752 MsG0680030961.01.T01:CDS
TTGGAAAATGGTGTGTTAAA+TGG 0.282675 6:-12212484 MsG0680030961.01.T01:CDS
AAAACAGTTAATCCCAAGTT+TGG 0.285883 6:-12213172 MsG0680030961.01.T01:CDS
ACCATCATTATTCCTATTTC+CGG 0.295858 6:+12212285 None:intergenic
TCAAGAGAGTGTTTGAGATT+TGG 0.304260 6:+12213363 None:intergenic
TTTGTTTGAATTATCACCTT+TGG 0.324163 6:-12212803 MsG0680030961.01.T01:CDS
TTTGACTCAGCTACAATTAA+GGG 0.333807 6:+12213243 None:intergenic
TCATGTGAAATTTCCAAACT+TGG 0.337619 6:+12213159 None:intergenic
AAGAAGTGGTTGATACATTT+GGG 0.337994 6:+12213403 None:intergenic
TAAGAAATATGCACAATCTA+AGG 0.339968 6:-12212767 MsG0680030961.01.T01:CDS
GAAGTAACATCAACTTTCTT+AGG 0.346906 6:+12212337 None:intergenic
CAACTTTGTTTATGAATGCT+TGG 0.362678 6:-12213038 MsG0680030961.01.T01:CDS
ATAATCGAAGCTTAAAGGTT+TGG 0.373753 6:-12212864 MsG0680030961.01.T01:CDS
TTCTTGTTGGTAACATCATA+TGG 0.376227 6:-12213317 MsG0680030961.01.T01:CDS
TGAATTTCATTTATTCCTAA+AGG 0.386899 6:+12212922 None:intergenic
AAATGGTGTGTTAAATGGTT+TGG 0.391639 6:-12212479 MsG0680030961.01.T01:CDS
CAACACTTCCTCCTTCTTGT+TGG 0.397153 6:-12213330 MsG0680030961.01.T01:CDS
TCCATTATAAAAGACCCTTT+AGG 0.400364 6:-12212937 MsG0680030961.01.T01:CDS
GAATTTCATTTATTCCTAAA+GGG 0.407307 6:+12212923 None:intergenic
ACACACCATGCAGCTGTTGA+TGG 0.410923 6:-12213069 MsG0680030961.01.T01:CDS
GTGTTTGAGATTTGGAAGAA+TGG 0.421678 6:+12213371 None:intergenic
TACCGGGTCACCTAGGTTTG+AGG 0.428257 6:-12212389 MsG0680030961.01.T01:CDS
TAGTGTGTCAAAGAAAGTTA+AGG 0.428756 6:+12213470 None:intergenic
GGTTTATTAGTGCTCTTAAA+GGG 0.434713 6:-12212528 MsG0680030961.01.T01:CDS
AATGATGGTGGAATTGAGAT+TGG 0.442831 6:-12212271 MsG0680030961.01.T01:CDS
GACTTTGAACAAGCAACAAA+TGG 0.453802 6:-12212245 MsG0680030961.01.T01:CDS
CCAATACAAAATCCATGGTT+AGG 0.454240 6:+12213099 None:intergenic
TTGAATCCTTGCAAGTTTGA+AGG 0.454277 6:-12212192 None:intergenic
CATGTGAAATTTCCAAACTT+GGG 0.459105 6:+12213160 None:intergenic
ACTTTGATAGATGTTGTTGA+TGG 0.460798 6:+12213546 None:intergenic
AAATAATTTGCATTAATTGG+TGG 0.462390 6:+12212613 None:intergenic
AAGTTAAGGGAAAAGTGGTT+GGG 0.463539 6:+12213484 None:intergenic
AGTGTGTCAAAGAAAGTTAA+GGG 0.481845 6:+12213471 None:intergenic
GCAATCTAAAACATCTAGAA+AGG 0.487853 6:-12212437 MsG0680030961.01.T01:CDS
AAAGAAAGTTAAGGGAAAAG+TGG 0.493670 6:+12213479 None:intergenic
ACTAGGGACATAGTTGATGA+TGG 0.495669 6:+12213275 None:intergenic
TGCTTATTTGTTGTCATTAG+GGG 0.498107 6:-12212707 MsG0680030961.01.T01:CDS
TAGAAGAAGAGACGTTCAAC+TGG 0.500653 6:+12213432 None:intergenic
CTCAGCTACAATTAAGGGAA+TGG 0.503277 6:+12213248 None:intergenic
GTAAATCCTTCAAACTTGCA+AGG 0.512498 6:+12212186 None:intergenic
AAACTATAAACCTCAAACCT+AGG 0.518440 6:+12212379 None:intergenic
TAAGAAAGTTGATGTTACTT+CGG 0.530062 6:-12212335 MsG0680030961.01.T01:CDS
AAAGTTAAGGGAAAAGTGGT+TGG 0.535581 6:+12213483 None:intergenic
TAAGGGAAAAGTGGTTGGGG+AGG 0.538764 6:+12213488 None:intergenic
TGTTGATTGTAGGTCACGCT+TGG 0.550010 6:-12212638 MsG0680030961.01.T01:CDS
AAAACAATAAGTGCAACAAA+TGG 0.550059 6:-12212841 MsG0680030961.01.T01:CDS
AGTTAAGGGAAAAGTGGTTG+GGG 0.552744 6:+12213485 None:intergenic
AGGCATTGTTAGAAGATGGT+GGG 0.559443 6:-12212549 MsG0680030961.01.T01:CDS
TCCGGAAATAGGAATAATGA+TGG 0.569496 6:-12212286 MsG0680030961.01.T01:CDS
ATTAAGGGAATGGAATCACT+AGG 0.573426 6:+12213258 None:intergenic
GAGGCATTGTTAGAAGATGG+TGG 0.582858 6:-12212550 MsG0680030961.01.T01:CDS
CTAGGGACATAGTTGATGAT+GGG 0.584622 6:+12213276 None:intergenic
ACAAATGGTGAAGCAGTCAA+AGG 0.589991 6:-12212826 MsG0680030961.01.T01:CDS
TTTGAACAAGCAACAAATGG+AGG 0.592025 6:-12212242 MsG0680030961.01.T01:CDS
AATGGAATCAAAGAAAGAAG+TGG 0.597523 6:+12213389 None:intergenic
TTATACCAATACAAAATCCA+TGG 0.607037 6:+12213094 None:intergenic
TTTCTATTACCGGGTCACCT+AGG 0.609709 6:-12212396 MsG0680030961.01.T01:CDS
GGAAATAGGAATAATGATGG+TGG 0.614158 6:-12212283 MsG0680030961.01.T01:CDS
AACCTCAAACCTAGGTGACC+CGG 0.614262 6:+12212387 None:intergenic
GTTACTTCGGTTGATAGACC+AGG 0.617818 6:-12212322 MsG0680030961.01.T01:CDS
AAGAAGAGACGTTCAACTGG+TGG 0.634712 6:+12213435 None:intergenic
ATTAGTTGTGCATGAAACTG+AGG 0.641688 6:-12212569 MsG0680030961.01.T01:CDS
ACTGAGGCATTGTTAGAAGA+TGG 0.644512 6:-12212553 MsG0680030961.01.T01:CDS
ACATAGTTGATGATGGGATG+TGG 0.647494 6:+12213282 None:intergenic
ATGGGATGTGGTGAATCTTG+TGG 0.652055 6:+12213294 None:intergenic
TGATGTTACCAACAAGAAGG+AGG 0.653468 6:+12213322 None:intergenic
ATATGATGTTACCAACAAGA+AGG 0.654769 6:+12213319 None:intergenic
TTAAGGGAATGGAATCACTA+GGG 0.654848 6:+12213259 None:intergenic
ATCAACAGCTGCATGGTGTG+TGG 0.669169 6:+12213071 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAATTCATTCAAAAAAA+TGG - Chr6:12212844-12212863 MsG0680030961.01.T01:CDS 15.0%
!!! CAATTAATGCAAATTATTTT+GGG - Chr6:12213144-12213163 MsG0680030961.01.T01:CDS 15.0%
!!! TATAAGATTTTTTCTATTAC+CGG - Chr6:12213347-12213366 MsG0680030961.01.T01:CDS 15.0%
!! GAATTTCATTTATTCCTAAA+GGG + Chr6:12212833-12212852 None:intergenic 20.0%
!! TGAATTTCATTTATTCCTAA+AGG + Chr6:12212834-12212853 None:intergenic 20.0%
!!! AAATAATTTGCATTAATTGG+TGG + Chr6:12213143-12213162 None:intergenic 20.0%
!!! AGGTTTATAGTTTTGATTTT+GGG - Chr6:12213384-12213403 MsG0680030961.01.T01:CDS 20.0%
!!! ATAAGATTTTTTCTATTACC+GGG - Chr6:12213348-12213367 MsG0680030961.01.T01:CDS 20.0%
!!! ATCTAAGGTTGAAAATAAAA+AGG - Chr6:12213001-12213020 MsG0680030961.01.T01:CDS 20.0%
!!! CCAAAATAATTTGCATTAAT+TGG + Chr6:12213146-12213165 None:intergenic 20.0%
!!! CCAATTAATGCAAATTATTT+TGG - Chr6:12213143-12213162 MsG0680030961.01.T01:CDS 20.0%
! AAAACAATAAGTGCAACAAA+TGG - Chr6:12212912-12212931 MsG0680030961.01.T01:CDS 25.0%
! AACAAATAATCGAAGCTTAA+AGG - Chr6:12212884-12212903 MsG0680030961.01.T01:CDS 25.0%
! AATTGATGTGTTAGATGATT+TGG - Chr6:12213250-12213269 MsG0680030961.01.T01:CDS 25.0%
! TAAGAAATATGCACAATCTA+AGG - Chr6:12212986-12213005 MsG0680030961.01.T01:CDS 25.0%
! TCAAAAAAATGGATGAATGT+TGG - Chr6:12212855-12212874 MsG0680030961.01.T01:CDS 25.0%
! TTATACCAATACAAAATCCA+TGG + Chr6:12212662-12212681 None:intergenic 25.0%
! TTTGTTTGAATTATCACCTT+TGG - Chr6:12212950-12212969 MsG0680030961.01.T01:CDS 25.0%
!! TAAAAAGGTTTCAACTTTTG+CGG - Chr6:12213016-12213035 MsG0680030961.01.T01:CDS 25.0%
!! TGTTAAATGGTTTGGAAAAT+TGG - Chr6:12213282-12213301 MsG0680030961.01.T01:CDS 25.0%
!! TTAAGCTTTTGAATATCCAA+AGG + Chr6:12212969-12212988 None:intergenic 25.0%
!!! AAAAAAGGTGTTAGATTTTG+AGG + Chr6:12212789-12212808 None:intergenic 25.0%
!!! ATAATGGACCTATCAAAAAA+AGG + Chr6:12212804-12212823 None:intergenic 25.0%
!!! ATCTAACACCTTTTTTTGAT+AGG - Chr6:12212793-12212812 MsG0680030961.01.T01:CDS 25.0%
!!! ATTTTGAGGTAAAAACATAG+AGG + Chr6:12212775-12212794 None:intergenic 25.0%
!!! GAGGTTTATAGTTTTGATTT+TGG - Chr6:12213383-12213402 MsG0680030961.01.T01:CDS 25.0%
!!! TAAGAAAGTTGATGTTACTT+CGG - Chr6:12213418-12213437 MsG0680030961.01.T01:CDS 25.0%
!!! TTATAGTTTTGATTTTGGGT+GGG - Chr6:12213388-12213407 MsG0680030961.01.T01:CDS 25.0%
!!! TTTATAGTTTTGATTTTGGG+TGG - Chr6:12213387-12213406 MsG0680030961.01.T01:CDS 25.0%
!!! TTTTGAGGTAAAAACATAGA+GGG + Chr6:12212774-12212793 None:intergenic 25.0%
!!! TTTTTCAACTTCACAAAGAT+TGG + Chr6:12212559-12212578 None:intergenic 25.0%
AAAAAATGGATGAATGTTGG+TGG - Chr6:12212858-12212877 MsG0680030961.01.T01:CDS 30.0%
AAAAACCAAAAATGCCTTGT+TGG + Chr6:12213093-12213112 None:intergenic 30.0%
AAAACAGTTAATCCCAAGTT+TGG - Chr6:12212581-12212600 MsG0680030961.01.T01:CDS 30.0%
AAACTATAAACCTCAAACCT+AGG + Chr6:12213377-12213396 None:intergenic 30.0%
AAAGAAAGTTAAGGGAAAAG+TGG + Chr6:12212277-12212296 None:intergenic 30.0%
AAATGGTGTGTTAAATGGTT+TGG - Chr6:12213274-12213293 MsG0680030961.01.T01:CDS 30.0%
AATGGAATCAAAGAAAGAAG+TGG + Chr6:12212367-12212386 None:intergenic 30.0%
ACCATCATTATTCCTATTTC+CGG + Chr6:12213471-12213490 None:intergenic 30.0%
ACTTTGATAGATGTTGTTGA+TGG + Chr6:12212210-12212229 None:intergenic 30.0%
AGTGTGTCAAAGAAAGTTAA+GGG + Chr6:12212285-12212304 None:intergenic 30.0%
ATAATCGAAGCTTAAAGGTT+TGG - Chr6:12212889-12212908 MsG0680030961.01.T01:CDS 30.0%
ATATGATGTTACCAACAAGA+AGG + Chr6:12212437-12212456 None:intergenic 30.0%
ATTTGACTCAGCTACAATTA+AGG + Chr6:12212514-12212533 None:intergenic 30.0%
CATGTGAAATTTCCAAACTT+GGG + Chr6:12212596-12212615 None:intergenic 30.0%
GAAGTAACATCAACTTTCTT+AGG + Chr6:12213419-12213438 None:intergenic 30.0%
GGTTTATTAGTGCTCTTAAA+GGG - Chr6:12213225-12213244 MsG0680030961.01.T01:CDS 30.0%
TAACTTTCTTTGACACACTA+TGG - Chr6:12212286-12212305 MsG0680030961.01.T01:CDS 30.0%
TAGTGTGTCAAAGAAAGTTA+AGG + Chr6:12212286-12212305 None:intergenic 30.0%
TCATGTGAAATTTCCAAACT+TGG + Chr6:12212597-12212616 None:intergenic 30.0%
TCCATTATAAAAGACCCTTT+AGG - Chr6:12212816-12212835 MsG0680030961.01.T01:CDS 30.0%
TTGGAAAATGGTGTGTTAAA+TGG - Chr6:12213269-12213288 MsG0680030961.01.T01:CDS 30.0%
TTTGACTCAGCTACAATTAA+GGG + Chr6:12212513-12212532 None:intergenic 30.0%
! AAAACCAAAAATGCCTTGTT+GGG + Chr6:12213092-12213111 None:intergenic 30.0%
! AAAGAAGTGGTTGATACATT+TGG + Chr6:12212354-12212373 None:intergenic 30.0%
! AAGAAGTGGTTGATACATTT+GGG + Chr6:12212353-12212372 None:intergenic 30.0%
! CAACTTTGTTTATGAATGCT+TGG - Chr6:12212715-12212734 MsG0680030961.01.T01:CDS 30.0%
! GCAATCTAAAACATCTAGAA+AGG - Chr6:12213316-12213335 MsG0680030961.01.T01:CDS 30.0%
! GTGTTAGATGATTTGGAAAA+TGG - Chr6:12213257-12213276 MsG0680030961.01.T01:CDS 30.0%
! TCCTAAAGGGTCTTTTATAA+TGG + Chr6:12212820-12212839 None:intergenic 30.0%
!! GTGCTTATTTGTTGTCATTA+GGG - Chr6:12213045-12213064 MsG0680030961.01.T01:CDS 30.0%
!! TGCTTATTTGTTGTCATTAG+GGG - Chr6:12213046-12213065 MsG0680030961.01.T01:CDS 30.0%
!! TGTGCTTATTTGTTGTCATT+AGG - Chr6:12213044-12213063 MsG0680030961.01.T01:CDS 30.0%
!! TTCTTGTTGGTAACATCATA+TGG - Chr6:12212436-12212455 MsG0680030961.01.T01:CDS 30.0%
!!! AACAAGGCATTTTTGGTTTT+TGG - Chr6:12213092-12213111 MsG0680030961.01.T01:CDS 30.0%
!!! TATAGTTTTGATTTTGGGTG+GGG - Chr6:12213389-12213408 MsG0680030961.01.T01:CDS 30.0%
AAAGTTAAGGGAAAAGTGGT+TGG + Chr6:12212273-12212292 None:intergenic 35.0%
AAGTTAAGGGAAAAGTGGTT+GGG + Chr6:12212272-12212291 None:intergenic 35.0%
ATTAAGGGAATGGAATCACT+AGG + Chr6:12212498-12212517 None:intergenic 35.0%
ATTAGTTGTGCATGAAACTG+AGG - Chr6:12213184-12213203 MsG0680030961.01.T01:CDS 35.0%
CCAATACAAAATCCATGGTT+AGG + Chr6:12212657-12212676 None:intergenic 35.0%
GACTTTGAACAAGCAACAAA+TGG - Chr6:12213508-12213527 MsG0680030961.01.T01:CDS 35.0%
GGAAATAGGAATAATGATGG+TGG - Chr6:12213470-12213489 MsG0680030961.01.T01:CDS 35.0%
GGGTTTATTAGTGCTCTTAA+AGG - Chr6:12213224-12213243 MsG0680030961.01.T01:CDS 35.0%
TCCGGAAATAGGAATAATGA+TGG - Chr6:12213467-12213486 MsG0680030961.01.T01:CDS 35.0%
TTAAGGGAATGGAATCACTA+GGG + Chr6:12212497-12212516 None:intergenic 35.0%
TTTGAACAAGCAACAAATGG+AGG - Chr6:12213511-12213530 MsG0680030961.01.T01:CDS 35.0%
! CCTAACCATGGATTTTGTAT+TGG - Chr6:12212654-12212673 MsG0680030961.01.T01:CDS 35.0%
! CTTTTTATCTGTCCGGAAAT+AGG - Chr6:12213456-12213475 MsG0680030961.01.T01:CDS 35.0%
! GTGTTTGAGATTTGGAAGAA+TGG + Chr6:12212385-12212404 None:intergenic 35.0%
! TTTGCTCGACTTTTTGTTCA+AGG - Chr6:12213536-12213555 MsG0680030961.01.T01:CDS 35.0%
!! AAAACCCAACAAGGCATTTT+TGG - Chr6:12213085-12213104 MsG0680030961.01.T01:CDS 35.0%
!! AATGATGGTGGAATTGAGAT+TGG - Chr6:12213482-12213501 MsG0680030961.01.T01:CDS 35.0%
!! TCAAGAGAGTGTTTGAGATT+TGG + Chr6:12212393-12212412 None:intergenic 35.0%
!!! GTCACTTTTTTTCCTAACCA+TGG - Chr6:12212642-12212661 MsG0680030961.01.T01:CDS 35.0%
!!! TAGAGGGTGTGTTTTTTTCA+AGG + Chr6:12212758-12212777 None:intergenic 35.0%
!!! TGGTTTTTGGTGTTGATTGT+AGG - Chr6:12213105-12213124 MsG0680030961.01.T01:CDS 35.0%
ACAAATGGTGAAGCAGTCAA+AGG - Chr6:12212927-12212946 MsG0680030961.01.T01:CDS 40.0%
AGTTAAGGGAAAAGTGGTTG+GGG + Chr6:12212271-12212290 None:intergenic 40.0%
CTCAGCTACAATTAAGGGAA+TGG + Chr6:12212508-12212527 None:intergenic 40.0%
TAGAAGAAGAGACGTTCAAC+TGG + Chr6:12212324-12212343 None:intergenic 40.0%
TGACCAACAAAAACCCAACA+AGG - Chr6:12213076-12213095 MsG0680030961.01.T01:CDS 40.0%
TGATGTTACCAACAAGAAGG+AGG + Chr6:12212434-12212453 None:intergenic 40.0%
! AGGCATTGTTAGAAGATGGT+GGG - Chr6:12213204-12213223 MsG0680030961.01.T01:CDS 40.0%
! ATTTTCCATCAACAGCTGCA+TGG + Chr6:12212692-12212711 None:intergenic 40.0%
!! ACATAGTTGATGATGGGATG+TGG + Chr6:12212474-12212493 None:intergenic 40.0%
!! ACTAGGGACATAGTTGATGA+TGG + Chr6:12212481-12212500 None:intergenic 40.0%
!! ACTGAGGCATTGTTAGAAGA+TGG - Chr6:12213200-12213219 MsG0680030961.01.T01:CDS 40.0%
!! ATGCCTTGTTGGGTTTTTGT+TGG + Chr6:12213082-12213101 None:intergenic 40.0%
!! CTAGGGACATAGTTGATGAT+GGG + Chr6:12212480-12212499 None:intergenic 40.0%
!!! GGGTGTGTTTTTTTCAAGGT+TGG + Chr6:12212754-12212773 None:intergenic 40.0%
AAGAAGAGACGTTCAACTGG+TGG + Chr6:12212321-12212340 None:intergenic 45.0%
ATGGGATGTGGTGAATCTTG+TGG + Chr6:12212462-12212481 None:intergenic 45.0%
CAACACTTCCTCCTTCTTGT+TGG - Chr6:12212423-12212442 MsG0680030961.01.T01:CDS 45.0%
TTTCTATTACCGGGTCACCT+AGG - Chr6:12213357-12213376 MsG0680030961.01.T01:CDS 45.0%
! CCAGGAGCTTTTTATCTGTC+CGG - Chr6:12213449-12213468 MsG0680030961.01.T01:CDS 45.0%
! GTTGGGGAGGTTTCATTTTG+TGG + Chr6:12212255-12212274 None:intergenic 45.0%
! TGTTGATTGTAGGTCACGCT+TGG - Chr6:12213115-12213134 MsG0680030961.01.T01:CDS 45.0%
!! GAGGCATTGTTAGAAGATGG+TGG - Chr6:12213203-12213222 MsG0680030961.01.T01:CDS 45.0%
!! GTTACTTCGGTTGATAGACC+AGG - Chr6:12213431-12213450 MsG0680030961.01.T01:CDS 45.0%
AACCTCAAACCTAGGTGACC+CGG + Chr6:12213369-12213388 None:intergenic 50.0%
ACACACCATGCAGCTGTTGA+TGG - Chr6:12212684-12212703 MsG0680030961.01.T01:CDS 50.0%
ATCAACAGCTGCATGGTGTG+TGG + Chr6:12212685-12212704 None:intergenic 50.0%
CCGGACAGATAAAAAGCTCC+TGG + Chr6:12213452-12213471 None:intergenic 50.0%
TAAGGGAAAAGTGGTTGGGG+AGG + Chr6:12212268-12212287 None:intergenic 50.0%
TACCGGGTCACCTAGGTTTG+AGG - Chr6:12213364-12213383 MsG0680030961.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 12212195 12213580 12212195 ID=MsG0680030961.01;Name=MsG0680030961.01
Chr6 mRNA 12212195 12213580 12212195 ID=MsG0680030961.01.T01;Parent=MsG0680030961.01;Name=MsG0680030961.01.T01;_AED=0.18;_eAED=0.18;_QI=0|-1|0|1|-1|1|1|0|461
Chr6 exon 12212195 12213580 12212195 ID=MsG0680030961.01.T01:exon:8768;Parent=MsG0680030961.01.T01
Chr6 CDS 12212195 12213580 12212195 ID=MsG0680030961.01.T01:cds;Parent=MsG0680030961.01.T01
Gene Sequence

>MsG0680030961.01.T01

ATGGCATCATTACCATCAACAACATCTATCAAAGTTCATCAAGTTCTTTCTATAGCACCACAAAATGAAACCTCCCCAACCACTTTTCCCTTAACTTTCTTTGACACACTATGGATAAGACAACCACCAGTTGAACGTCTCTTCTTCTATGAACTCCCAAATGTATCAACCACTTCTTTCTTTGATTCCATTCTTCCAAATCTCAAACACTCTCTTGAACTCACACTTCAACACTTCCTCCTTCTTGTTGGTAACATCATATGGCCACAAGATTCACCACATCCCATCATCAACTATGTCCCTAGTGATTCCATTCCCTTAATTGTAGCTGAGTCAAATGAAAATTTCAATCTCTTATGTTCCAATCTTTGTGAAGTTGAAAAAAGAAAACAGTTAATCCCAAGTTTGGAAATTTCACATGAAAAAGCATCAATTATTTCACTACAAGTCACTTTTTTTCCTAACCATGGATTTTGTATTGGTATAACCACACACCATGCAGCTGTTGATGGAAAATCTTCAACTTTGTTTATGAATGCTTGGTCTTATTTTTGTTCCAACCTTGAAAAAAACACACCCTCTATGTTTTTACCTCAAAATCTAACACCTTTTTTTGATAGGTCCATTATAAAAGACCCTTTAGGAATAAATGAAATTCATTCAAAAAAATGGATGAATGTTGGTGGAGAAACAAATAATCGAAGCTTAAAGGTTTGGAAAACAATAAGTGCAACAAATGGTGAAGCAGTCAAAGGTTTGTTTGAATTATCACCTTTGGATATTCAAAAGCTTAAGAAATATGCACAATCTAAGGTTGAAAATAAAAAGGTTTCAACTTTTGCGGTTACATGTGCTTATTTGTTGTCATTAGGGGTTAAAGTTGACCAACAAAAACCCAACAAGGCATTTTTGGTTTTTGGTGTTGATTGTAGGTCACGCTTGGATCCACCAATTAATGCAAATTATTTTGGGAATTGTATTGTGTCAAGATTAGTTGTGCATGAAACTGAGGCATTGTTAGAAGATGGTGGGTTTATTAGTGCTCTTAAAGGGATAATTGATGTGTTAGATGATTTGGAAAATGGTGTGTTAAATGGTTTGGAAAATTGGATGTCAATGATGCAATCTAAAACATCTAGAAAGGATGAGACTTATAAGATTTTTTCTATTACCGGGTCACCTAGGTTTGAGGTTTATAGTTTTGATTTTGGGTGGGGTAAGCCTAAGAAAGTTGATGTTACTTCGGTTGATAGACCAGGAGCTTTTTATCTGTCCGGAAATAGGAATAATGATGGTGGAATTGAGATTGGTTTGACTTTGAACAAGCAACAAATGGAGGTTTTTGCTCGACTTTTTGTTCAAGGACTTGAATCCTTGCAAGTTTGA

Protein sequence

>MsG0680030961.01.T01

MASLPSTTSIKVHQVLSIAPQNETSPTTFPLTFFDTLWIRQPPVERLFFYELPNVSTTSFFDSILPNLKHSLELTLQHFLLLVGNIIWPQDSPHPIINYVPSDSIPLIVAESNENFNLLCSNLCEVEKRKQLIPSLEISHEKASIISLQVTFFPNHGFCIGITTHHAAVDGKSSTLFMNAWSYFCSNLEKNTPSMFLPQNLTPFFDRSIIKDPLGINEIHSKKWMNVGGETNNRSLKVWKTISATNGEAVKGLFELSPLDIQKLKKYAQSKVENKKVSTFAVTCAYLLSLGVKVDQQKPNKAFLVFGVDCRSRLDPPINANYFGNCIVSRLVVHETEALLEDGGFISALKGIIDVLDDLENGVLNGLENWMSMMQSKTSRKDETYKIFSITGSPRFEVYSFDFGWGKPKKVDVTSVDRPGAFYLSGNRNNDGGIEIGLTLNKQQMEVFARLFVQGLESLQV*