AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018440.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018440.01.T01 MTR_4g011720 80.170 353 30 3 1 352 1 314 0.0 570
MsG0480018440.01.T01 MTR_4g011690 73.938 353 53 2 1 352 1 315 0.0 530
MsG0480018440.01.T01 MTR_4g011720 89.062 256 27 1 1 256 1 255 1.25e-167 468
MsG0480018440.01.T01 MTR_7g090520 35.376 359 182 9 1 352 1 316 3.92e-73 229
MsG0480018440.01.T01 MTR_3g108520 33.623 345 179 9 1 337 1 303 2.24e-59 194
MsG0480018440.01.T01 MTR_1g011600 33.934 333 166 9 1 321 1 291 5.01e-58 190
MsG0480018440.01.T01 MTR_4g021380 31.250 336 182 8 8 334 6 301 1.55e-51 174
MsG0480018440.01.T01 MTR_4g021360 31.176 340 186 8 1 334 1 298 5.46e-51 172
MsG0480018440.01.T01 MTR_6g035160 39.655 174 64 4 164 335 29 163 7.58e-34 123
MsG0480018440.01.T01 MTR_8g030880 26.891 357 203 9 7 352 8 317 3.44e-30 117
MsG0480018440.01.T01 MTR_7g077670 25.902 305 182 4 35 334 30 295 2.10e-25 104
MsG0480018440.01.T01 MTR_5g025090 26.911 327 185 10 9 333 5 279 5.04e-24 100
MsG0480018440.01.T01 MTR_5g025050 26.301 346 186 10 9 339 5 296 3.15e-23 98.6
MsG0480018440.01.T01 MTR_5g027230 26.426 333 188 10 1 331 1 278 3.30e-23 98.6
MsG0480018440.01.T01 MTR_1g070120 24.484 339 201 9 9 340 38 328 4.23e-23 98.6
MsG0480018440.01.T01 MTR_8g024120 25.287 348 191 8 5 338 38 330 4.87e-23 98.6
MsG0480018440.01.T01 MTR_1g070135 24.633 341 188 9 9 335 38 323 1.93e-22 97.1
MsG0480018440.01.T01 MTR_5g024940 27.027 333 167 12 1 331 1 259 8.80e-22 94.0
MsG0480018440.01.T01 MTR_8g074050 25.278 360 207 12 1 349 44 352 2.78e-21 94.0
MsG0480018440.01.T01 MTR_7g102820 25.275 364 181 11 7 339 65 368 1.06e-20 92.4
MsG0480018440.01.T01 MTR_3g092890 25.145 346 186 8 9 339 38 325 1.74e-20 91.3
MsG0480018440.01.T01 MTR_0009s0050 26.074 349 207 10 3 346 41 343 9.57e-20 89.4
MsG0480018440.01.T01 MTR_5g005570 25.000 332 185 12 7 331 35 309 9.93e-20 89.0
MsG0480018440.01.T01 MTR_0009s0050 26.074 349 207 10 3 346 41 343 1.09e-19 89.4
MsG0480018440.01.T01 MTR_4g074130 25.378 331 187 11 7 331 38 314 1.45e-19 89.0
MsG0480018440.01.T01 MTR_1g070085 25.369 339 196 9 9 338 37 327 1.98e-19 88.6
MsG0480018440.01.T01 MTR_1g070085 25.369 339 196 9 9 338 37 327 1.98e-19 88.6
MsG0480018440.01.T01 MTR_7g068650 25.989 354 204 12 7 348 52 359 5.15e-19 87.4
MsG0480018440.01.T01 MTR_4g116010 25.378 331 187 11 3 324 44 323 5.36e-19 87.4
MsG0480018440.01.T01 MTR_5g059130 24.852 338 190 11 7 332 42 327 5.56e-19 87.0
MsG0480018440.01.T01 MTR_1g011580 24.013 304 177 7 9 308 63 316 2.32e-18 85.5
MsG0480018440.01.T01 MTR_7g451860 25.000 332 188 10 7 331 39 316 2.74e-18 85.1
MsG0480018440.01.T01 MTR_7g047670 25.000 332 188 10 7 331 39 316 2.74e-18 85.1
MsG0480018440.01.T01 MTR_4g015790 24.377 361 201 13 7 348 60 367 4.96e-18 84.7
MsG0480018440.01.T01 MTR_1g070100 25.532 235 134 5 116 349 61 255 6.03e-18 82.8
MsG0480018440.01.T01 MTR_3g117420 26.126 333 192 14 1 325 44 330 7.77e-18 84.0
MsG0480018440.01.T01 MTR_7g062580 25.364 343 193 13 8 339 54 344 8.23e-18 84.0
MsG0480018440.01.T01 MTR_8g074070 25.698 358 208 15 1 349 44 352 1.42e-17 83.2
MsG0480018440.01.T01 MTR_5g032880 25.000 336 195 9 9 337 38 323 1.67e-17 84.3
MsG0480018440.01.T01 MTR_5g032880 25.220 341 204 9 9 341 376 673 9.89e-17 82.0
MsG0480018440.01.T01 MTR_4g087090 24.405 336 201 8 9 331 30 325 2.72e-17 82.4
MsG0480018440.01.T01 MTR_1g070085 26.667 225 123 6 116 338 65 249 2.92e-17 80.9
MsG0480018440.01.T01 MTR_0009s0050 27.468 233 127 5 116 346 53 245 2.93e-17 80.9
MsG0480018440.01.T01 MTR_0009s0050 27.468 233 127 5 116 346 53 245 4.78e-17 80.1
MsG0480018440.01.T01 MTR_7g062570 25.575 348 192 13 8 342 54 347 6.69e-17 81.3
MsG0480018440.01.T01 MTR_1g034140 22.923 349 192 11 6 331 24 318 7.20e-17 80.9
MsG0480018440.01.T01 MTR_8g093930 23.768 345 204 12 3 334 41 339 7.28e-17 81.3
MsG0480018440.01.T01 MTR_3g070860 23.333 360 205 11 7 348 48 354 1.41e-16 80.5
MsG0480018440.01.T01 MTR_1g081840 22.941 340 207 10 7 334 51 347 1.50e-16 80.5
MsG0480018440.01.T01 MTR_5g055680 25.217 345 207 10 3 342 41 339 1.69e-16 80.1
MsG0480018440.01.T01 MTR_3g096500 22.841 359 204 11 7 343 64 371 3.85e-16 79.3
MsG0480018440.01.T01 MTR_2g437380 24.438 356 197 9 9 346 50 351 6.37e-16 78.6
MsG0480018440.01.T01 MTR_2g102570 23.235 340 198 9 9 335 52 341 8.90e-16 78.2
MsG0480018440.01.T01 MTR_5g055900 24.348 345 212 8 2 342 40 339 9.21e-16 77.8
MsG0480018440.01.T01 MTR_0009s0050 28.571 203 103 5 146 346 1 163 2.01e-15 73.9
MsG0480018440.01.T01 MTR_7g062600 23.977 342 206 10 8 342 50 344 2.04e-15 77.0
MsG0480018440.01.T01 MTR_1g070135 25.726 241 148 6 9 235 38 261 4.21e-15 75.1
MsG0480018440.01.T01 MTR_5g082750 24.581 358 209 11 4 348 44 353 4.58e-15 75.9
MsG0480018440.01.T01 MTR_3g072820 23.739 337 197 12 5 331 38 324 6.62e-15 75.1
MsG0480018440.01.T01 MTR_8g075890 24.179 335 198 11 8 333 38 325 9.63e-15 75.1
MsG0480018440.01.T01 MTR_3g058610 24.522 314 183 9 29 333 57 325 1.08e-14 74.7
MsG0480018440.01.T01 MTR_8g075830 24.437 311 183 8 31 333 59 325 1.13e-14 74.7
MsG0480018440.01.T01 MTR_7g063730 24.791 359 205 13 8 352 63 370 1.85e-14 73.9
MsG0480018440.01.T01 MTR_2g072890 24.419 344 211 10 4 342 47 346 3.06e-14 73.6
MsG0480018440.01.T01 MTR_8g064200 25.291 344 205 11 5 342 53 350 3.26e-14 73.2
MsG0480018440.01.T01 MTR_8g064200 25.291 344 205 11 5 342 48 345 4.18e-14 72.8
MsG0480018440.01.T01 MTR_1g102070 26.636 214 116 4 122 334 180 353 4.45e-14 73.2
MsG0480018440.01.T01 MTR_7g062550 24.854 342 202 12 8 342 59 352 4.47e-14 73.2
MsG0480018440.01.T01 MTR_7g102720 22.727 352 200 10 9 346 37 330 5.00e-14 72.4
MsG0480018440.01.T01 MTR_6g464620 25.551 227 128 4 124 349 187 373 5.24e-14 72.8
MsG0480018440.01.T01 MTR_2g083030 25.148 338 185 15 2 331 33 310 5.96e-14 72.4
MsG0480018440.01.T01 MTR_2g083000 22.492 329 195 9 8 331 32 305 6.60e-14 72.0
MsG0480018440.01.T01 MTR_5g022020 23.724 333 202 10 8 333 38 325 1.19e-13 71.6
MsG0480018440.01.T01 MTR_1g033810 26.866 335 192 12 4 331 42 330 1.70e-13 71.2
MsG0480018440.01.T01 MTR_5g048470 23.919 347 212 11 2 342 46 346 1.82e-13 71.2
MsG0480018440.01.T01 MTR_3g043900 23.324 343 208 11 9 346 56 348 7.27e-13 69.3
MsG0480018440.01.T01 MTR_3g045230 22.286 350 206 10 9 347 56 350 8.55e-13 68.9
MsG0480018440.01.T01 MTR_5g055690 24.425 348 195 13 9 342 47 340 2.34e-12 67.8
MsG0480018440.01.T01 MTR_5g055820 25.079 315 185 10 36 342 69 340 7.51e-12 66.2
MsG0480018440.01.T01 MTR_6g092620 24.024 333 162 11 7 314 1 267 1.47e-11 65.1
MsG0480018440.01.T01 MTR_4g115990 23.692 325 183 10 3 324 40 302 1.54e-11 65.1
MsG0480018440.01.T01 MTR_8g063070 21.170 359 219 13 5 349 63 371 5.31e-11 63.5
MsG0480018440.01.T01 MTR_3g026150 23.410 346 206 13 3 339 54 349 6.69e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018440.01.T01 AT1G52820 54.213 356 120 4 1 352 1 317 3.82e-137 393
MsG0480018440.01.T01 AT4G03070 47.262 347 133 5 7 346 12 315 1.03e-107 318
MsG0480018440.01.T01 AT1G52820 60.000 240 92 2 1 237 1 239 6.30e-102 301
MsG0480018440.01.T01 AT1G28030 44.167 360 147 9 3 352 7 322 1.27e-95 287
MsG0480018440.01.T01 AT1G52790 38.150 346 172 4 8 351 4 309 2.61e-85 261
MsG0480018440.01.T01 AT1G52800 38.905 347 169 6 8 352 9 314 8.77e-83 254
MsG0480018440.01.T01 AT1G52810 39.601 351 136 7 7 352 10 289 1.34e-77 240
MsG0480018440.01.T01 AT1G80320 31.728 353 189 7 9 352 9 318 2.57e-57 189
MsG0480018440.01.T01 AT1G15540 31.781 365 190 10 1 352 1 319 3.14e-53 178
MsG0480018440.01.T01 AT1G15540 31.781 365 190 10 1 352 1 319 3.14e-53 178
MsG0480018440.01.T01 AT1G15540 31.781 365 190 10 1 352 8 326 3.33e-53 178
MsG0480018440.01.T01 AT1G15540 31.781 365 190 10 1 352 4 322 4.12e-53 178
MsG0480018440.01.T01 AT4G03050 42.308 182 102 1 8 189 7 185 2.31e-44 157
MsG0480018440.01.T01 AT4G03050 37.500 176 69 4 179 352 271 407 5.51e-33 127
MsG0480018440.01.T01 AT4G03050 42.308 182 102 1 8 189 7 185 2.31e-44 157
MsG0480018440.01.T01 AT4G03050 37.500 176 69 4 179 352 271 407 5.51e-33 127
MsG0480018440.01.T01 AT4G23340 25.656 343 194 10 7 339 8 299 4.73e-25 103
MsG0480018440.01.T01 AT2G36690 24.928 349 190 10 7 339 59 351 1.14e-20 92.4
MsG0480018440.01.T01 AT2G36690 24.928 349 190 10 7 339 59 351 1.14e-20 92.4
MsG0480018440.01.T01 AT5G24530 24.713 348 186 9 9 338 38 327 6.21e-19 87.0
MsG0480018440.01.T01 AT1G14120 26.254 339 195 9 9 341 8 297 1.13e-18 85.9
MsG0480018440.01.T01 AT1G14120 26.254 339 195 9 9 341 8 297 1.13e-18 85.9
MsG0480018440.01.T01 AT1G14120 26.254 339 195 9 9 341 8 297 1.13e-18 85.9
MsG0480018440.01.T01 AT5G05600 25.698 358 209 11 3 349 56 367 8.85e-18 84.0
MsG0480018440.01.T01 AT5G51310 23.446 354 198 10 7 339 3 304 1.59e-17 82.8
MsG0480018440.01.T01 AT1G78550 24.706 340 207 12 8 342 52 347 3.05e-17 82.4
MsG0480018440.01.T01 AT2G38240 26.271 354 202 14 3 346 42 346 3.30e-17 82.0
MsG0480018440.01.T01 AT4G21690 22.756 312 186 7 35 332 63 333 7.95e-17 80.9
MsG0480018440.01.T01 AT1G50960 25.667 300 173 8 7 302 38 291 1.35e-16 80.1
MsG0480018440.01.T01 AT1G15550 22.590 332 201 5 9 333 57 339 3.00e-16 79.3
MsG0480018440.01.T01 AT1G78550 25.614 285 166 10 60 339 23 266 4.21e-16 77.8
MsG0480018440.01.T01 AT3G11180 25.424 354 203 12 7 349 93 396 5.62e-16 79.0
MsG0480018440.01.T01 AT5G51810 22.419 339 205 9 7 334 61 352 9.74e-16 78.2
MsG0480018440.01.T01 AT3G11180 25.210 357 206 12 7 352 93 399 1.48e-15 77.8
MsG0480018440.01.T01 AT4G25420 23.304 339 206 10 7 334 59 354 1.62e-15 77.4
MsG0480018440.01.T01 AT3G55970 23.611 360 193 11 9 345 52 352 2.83e-15 76.6
MsG0480018440.01.T01 AT4G21200 24.545 330 188 12 7 331 40 313 3.34e-15 76.3
MsG0480018440.01.T01 AT5G20550 23.596 356 204 12 6 346 42 344 5.43e-15 75.5
MsG0480018440.01.T01 AT3G13610 25.419 358 196 13 3 346 56 356 6.41e-15 75.5
MsG0480018440.01.T01 AT2G44800 25.287 348 204 11 9 348 52 351 7.74e-15 75.1
MsG0480018440.01.T01 AT1G80330 23.442 337 196 9 9 333 49 335 7.78e-15 75.1
MsG0480018440.01.T01 AT5G63590 25.223 337 189 13 7 331 12 297 8.44e-15 74.7
MsG0480018440.01.T01 AT3G51240 23.754 341 204 12 8 339 37 330 1.46e-14 74.3
MsG0480018440.01.T01 AT5G05600 29.098 244 154 10 3 235 56 291 5.06e-14 72.0
MsG0480018440.01.T01 AT4G16330 22.866 328 197 9 29 346 78 359 5.70e-14 72.8
MsG0480018440.01.T01 AT1G55290 23.496 349 202 10 9 346 62 356 1.02e-13 72.0
MsG0480018440.01.T01 AT3G60290 24.646 353 215 10 1 348 45 351 1.11e-13 71.6
MsG0480018440.01.T01 AT5G20400 24.058 345 197 12 7 336 43 337 1.83e-13 70.9
MsG0480018440.01.T01 AT5G63600 22.581 310 184 9 32 332 49 311 2.31e-13 70.5
MsG0480018440.01.T01 AT3G55970 25.000 252 148 9 9 237 52 285 3.99e-13 69.7
MsG0480018440.01.T01 AT5G63600 22.330 309 185 8 32 332 49 310 4.36e-13 69.7
MsG0480018440.01.T01 AT1G30040 23.438 320 180 10 29 331 41 312 7.10e-13 69.3
MsG0480018440.01.T01 AT5G54000 24.277 346 195 11 7 336 44 338 1.01e-12 68.9
MsG0480018440.01.T01 AT5G43440 25.100 251 150 8 7 240 60 289 2.54e-12 67.0
MsG0480018440.01.T01 AT4G16330 23.377 231 132 5 117 346 67 253 3.52e-12 66.2
MsG0480018440.01.T01 AT5G43440 24.026 308 184 13 7 294 60 337 5.61e-12 66.6
MsG0480018440.01.T01 AT3G47190 27.126 247 146 10 7 236 30 259 1.74e-11 65.1
MsG0480018440.01.T01 AT1G80340 23.193 332 197 7 9 332 50 331 2.36e-11 64.7
MsG0480018440.01.T01 AT4G25420 25.000 244 167 9 7 239 59 297 4.44e-11 63.5
MsG0480018440.01.T01 AT1G30040 25.676 222 138 9 30 234 42 253 7.88e-11 62.4
MsG0480018440.01.T01 AT5G63580 28.390 236 145 9 9 234 19 240 8.57e-11 62.0
MsG0480018440.01.T01 AT5G51810 24.686 239 160 8 7 234 61 290 8.97e-11 62.4
MsG0480018440.01.T01 AT5G43450 24.291 247 149 8 7 237 59 283 9.82e-11 62.4

Find 125 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAATCAAATTAGGAAATT+AGG 0.117921 4:+4923975 MsG0480018440.01.T01:five_prime_UTR
CTAATTTCCTAATTTGATTA+AGG 0.153774 4:-4923974 None:intergenic
CTAAACCTTCCACTTGATTT+TGG 0.165013 4:-4924951 None:intergenic
CTCCTCGGAGAAGGAATTTA+TGG 0.165333 4:-4924740 None:intergenic
ACACATCATATATATATTTA+TGG 0.191669 4:-4925687 None:intergenic
TTTATAATGTACCCTTCTTT+GGG 0.224285 4:-4925360 None:intergenic
CATAACCCTGAGATGGTAAT+TGG 0.227792 4:-4924848 None:intergenic
GGGAAGGACCGGTGAAAATA+TGG 0.251843 4:+4923996 MsG0480018440.01.T01:exon
GCTTATCCATTGTCCATCTT+TGG 0.274641 4:-4924983 None:intergenic
TCCATCCGGCCACAAGATAT+TGG 0.294565 4:-4924352 None:intergenic
GCATTACCCTTAATCAAATT+AGG 0.296745 4:+4923967 MsG0480018440.01.T01:five_prime_UTR
TAACTCCCAATTGGGACTTT+TGG 0.307103 4:-4924076 None:intergenic
CTTCATTAGTTACCAATTGA+TGG 0.307473 4:-4925095 None:intergenic
TTAATCAAATTAGGAAATTA+GGG 0.307539 4:+4923976 MsG0480018440.01.T01:five_prime_UTR
CTCTTCTAGTGAAGTAAATA+TGG 0.310135 4:-4924184 None:intergenic
TATATGTTGTTTGCATTCAT+TGG 0.322888 4:+4925758 MsG0480018440.01.T01:three_prime_UTR
AGCTACAAGTCTTCTTCTTC+AGG 0.328794 4:+4925003 MsG0480018440.01.T01:CDS
TAATTTCCTAATTTGATTAA+GGG 0.341755 4:-4923973 None:intergenic
AGGTTATTGAAGTCAATTAT+TGG 0.351381 4:-4924042 None:intergenic
AGTGAAGTCCCAAGTCTATA+AGG 0.368829 4:+4924098 MsG0480018440.01.T01:CDS
GGAAAGCAACTTATTTCCTT+TGG 0.370279 4:-4923726 None:intergenic
AAGCCTTATGATGGCTATCT+TGG 0.371205 4:+4924252 MsG0480018440.01.T01:CDS
CTCATCATCACCCGGTGAAA+TGG 0.378285 4:-4925297 None:intergenic
AATTACACCGGTGTTACGTC+TGG 0.386685 4:+4925537 MsG0480018440.01.T01:three_prime_UTR
GGACTTCACTAACTCCCAAT+TGG 0.386844 4:-4924085 None:intergenic
AAATGCATGTGACCACGATC+TGG 0.392639 4:-4925164 None:intergenic
GGCTGCATTCGCCATTTCAC+CGG 0.398369 4:+4925286 MsG0480018440.01.T01:CDS
TATAAGGCATTAGCAGAGTA+TGG 0.406334 4:+4924114 MsG0480018440.01.T01:CDS
CTATAGCTTATGTTATTAAG+AGG 0.409102 4:+4925659 MsG0480018440.01.T01:three_prime_UTR
TCCTCATCCACCAGCTCCTC+CGG 0.417316 4:-4925387 None:intergenic
ATGTGAACATTGAAAGCAAA+AGG 0.421581 4:-4923798 None:intergenic
TGGAAGCCAAAAGTCCCAAT+TGG 0.421664 4:+4924070 MsG0480018440.01.T01:CDS
ATTTATAAATAACCATCAAT+TGG 0.422148 4:+4925083 MsG0480018440.01.T01:CDS
ACTCAACCAATTACCATCTC+AGG 0.428477 4:+4924842 MsG0480018440.01.T01:CDS
CTGCTAATGCCTTATAGACT+TGG 0.437929 4:-4924107 None:intergenic
TTGATGGTTATTTATAAATG+AGG 0.450763 4:-4925079 None:intergenic
TCCGGAGGAGCTGGTGGATG+AGG 0.453378 4:+4925386 MsG0480018440.01.T01:CDS
TTGAGTAGCTTAGTCTCTAA+AGG 0.454248 4:-4924219 None:intergenic
ACATTAACAACTCTTAAGAC+TGG 0.460983 4:-4923846 None:intergenic
CTCTCATAAAGTGGAACTAC+AGG 0.468829 4:-4924282 None:intergenic
TATAAAAGCTCCGGAGGAGC+TGG 0.478262 4:+4925377 MsG0480018440.01.T01:CDS
CTCAATTAGCTCCTCGGAGA+AGG 0.480469 4:-4924749 None:intergenic
GACTTCACTAACTCCCAATT+GGG 0.486736 4:-4924084 None:intergenic
TGAGTAGCTTAGTCTCTAAA+GGG 0.493999 4:-4924218 None:intergenic
ATGCTTGCTTAGTTTAAGCT+AGG 0.494688 4:-4923948 None:intergenic
ACCAATATCTTGTGGCCGGA+TGG 0.495704 4:+4924351 MsG0480018440.01.T01:CDS
CTCCGAGGAGCTAATTGAGT+TGG 0.496308 4:+4924753 MsG0480018440.01.T01:CDS
AGGAACTCAGCATAATCAAA+AGG 0.497152 4:-4925429 None:intergenic
ATCCAACTCAATTAGCTCCT+CGG 0.499257 4:-4924755 None:intergenic
TGACCAAGATAGCCATCATA+AGG 0.499656 4:-4924255 None:intergenic
ATAGCTCAAACCCATCCCTT+TGG 0.499909 4:-4925640 None:intergenic
CATATCAAAGTCAATAAAAG+TGG 0.500254 4:+4923768 MsG0480018440.01.T01:five_prime_UTR
ATGGCTTTGCGAAGGTGTAA+AGG 0.500853 4:-4924165 None:intergenic
TATAAATGAGGAATAGTGAA+TGG 0.501099 4:-4925067 None:intergenic
AATTATTGGAAGCTTTAGAA+TGG 0.504433 4:-4924028 None:intergenic
GTGTCTAATAAGCCTTATGA+TGG 0.509211 4:+4924243 MsG0480018440.01.T01:CDS
CGGTCTGTGCGCACTTATTG+TGG 0.509968 4:+4925486 MsG0480018440.01.T01:CDS
GGAAGCCAAAAGTCCCAATT+GGG 0.510341 4:+4924071 MsG0480018440.01.T01:CDS
CTACTCTCATGAAGGCCAAA+GGG 0.512486 4:+4925625 MsG0480018440.01.T01:three_prime_UTR
TGACTTCAATAACCTCAACT+TGG 0.518399 4:+4924050 MsG0480018440.01.T01:CDS
AGGGTACATTATAAAAGCTC+CGG 0.518778 4:+4925368 MsG0480018440.01.T01:CDS
TTTCACGCTCGAGAAGGCGT+GGG 0.522167 4:+4925459 MsG0480018440.01.T01:CDS
TTTAGGTGTTGAAAAGTACA+TGG 0.523921 4:+4924807 MsG0480018440.01.T01:CDS
GCTGCATTCGCCATTTCACC+GGG 0.528558 4:+4925287 MsG0480018440.01.T01:CDS
GGAAGGACCGGTGAAAATAT+GGG 0.532015 4:+4923997 MsG0480018440.01.T01:exon
TTAGGAAATTAGGGAAGGAC+CGG 0.534135 4:+4923985 MsG0480018440.01.T01:five_prime_UTR
TTCACGCTCGAGAAGGCGTG+GGG 0.534148 4:+4925460 MsG0480018440.01.T01:CDS
AATGAGGCAAGGTATTCAGC+AGG 0.534999 4:+4925324 MsG0480018440.01.T01:CDS
ATGGCCATCCTCTCATAAAG+TGG 0.539466 4:-4924291 None:intergenic
CTCATGAAGGCCAAAGGGAT+GGG 0.539788 4:+4925630 MsG0480018440.01.T01:three_prime_UTR
TCTCATGAAGGCCAAAGGGA+TGG 0.541383 4:+4925629 MsG0480018440.01.T01:three_prime_UTR
TTATAATGTACCCTTCTTTG+GGG 0.548996 4:-4925359 None:intergenic
CAAACAAGTGACACAAAACT+AGG 0.550916 4:+4924886 MsG0480018440.01.T01:CDS
TCAAATTAGGAAATTAGGGA+AGG 0.553446 4:+4923980 MsG0480018440.01.T01:five_prime_UTR
AAAAGCTCCGGAGGAGCTGG+TGG 0.554268 4:+4925380 MsG0480018440.01.T01:CDS
TTGTACCAAAATCAAGTGGA+AGG 0.554694 4:+4924946 MsG0480018440.01.T01:CDS
TTAGAGATGATGACCAAAGA+TGG 0.562948 4:+4924970 MsG0480018440.01.T01:CDS
CATGACCAATATCTTGTGGC+CGG 0.564885 4:+4924347 MsG0480018440.01.T01:CDS
TGTACTTCATAACCCTGAGA+TGG 0.565517 4:-4924855 None:intergenic
TGTGAACATTGAAAGCAAAA+GGG 0.566042 4:-4923797 None:intergenic
TGCTAATGCCTTATAGACTT+GGG 0.570558 4:-4924106 None:intergenic
TATAGCTTATGTTATTAAGA+GGG 0.570560 4:+4925660 MsG0480018440.01.T01:three_prime_UTR
CTGTAGTTCCACTTTATGAG+AGG 0.580451 4:+4924283 MsG0480018440.01.T01:CDS
AGTTCCACTTTATGAGAGGA+TGG 0.582196 4:+4924287 MsG0480018440.01.T01:CDS
CATATTGTACCAAAATCAAG+TGG 0.585592 4:+4924942 MsG0480018440.01.T01:CDS
CCTCAAAACACGGAGAGGGA+TGG 0.586411 4:-4923821 None:intergenic
AAGTATTACTACTCTCATGA+AGG 0.588140 4:+4925617 MsG0480018440.01.T01:three_prime_UTR
TTTCACCGGGTGATGATGAG+TGG 0.590400 4:+4925300 MsG0480018440.01.T01:CDS
AATGCATGTGACCACGATCT+GGG 0.591901 4:-4925163 None:intergenic
CATTCCCACTCATCATCACC+CGG 0.593548 4:-4925305 None:intergenic
ACAAAGTTCTTGTCAGTGTG+TGG 0.594909 4:-4924916 None:intergenic
TATAATGTACCCTTCTTTGG+GGG 0.599958 4:-4925358 None:intergenic
TGTAATTTGAGAAGTAAATG+TGG 0.600791 4:-4925521 None:intergenic
CTCGAGCGTGAAAATACTTG+AGG 0.604032 4:-4925449 None:intergenic
CTCAACCAATTACCATCTCA+GGG 0.604591 4:+4924843 MsG0480018440.01.T01:CDS
TGCAGGCATGGTCAAACGGG+AGG 0.605635 4:+4925265 MsG0480018440.01.T01:intron
ACTACTCTCATGAAGGCCAA+AGG 0.608150 4:+4925624 MsG0480018440.01.T01:three_prime_UTR
TTCACCGGGTGATGATGAGT+GGG 0.609819 4:+4925301 MsG0480018440.01.T01:CDS
TGATGACCAAAGATGGACAA+TGG 0.610775 4:+4924977 MsG0480018440.01.T01:CDS
CAACACAATACTTCTTACAA+AGG 0.611240 4:-4925787 None:intergenic
ATTTACTTCTCAAATTACAC+CGG 0.612419 4:+4925525 MsG0480018440.01.T01:three_prime_UTR
TAAGATATTTGCATCCTCGA+TGG 0.613439 4:-4924310 None:intergenic
GGTGATGATGAGTGGGAATG+AGG 0.615235 4:+4925308 MsG0480018440.01.T01:CDS
ATGCACAGTATGTGAACCAA+AGG 0.617134 4:+4923710 None:intergenic
ATTACACCGGTGTTACGTCT+GGG 0.619845 4:+4925538 MsG0480018440.01.T01:three_prime_UTR
TCTTGTCAGTGTGTGGACTG+AGG 0.624048 4:-4924909 None:intergenic
CATGAGAGTAGTAATACTTG+AGG 0.629628 4:-4925613 None:intergenic
AAAGCATGACCAATATCTTG+TGG 0.630527 4:+4924343 MsG0480018440.01.T01:CDS
GGATCCTCAAAACACGGAGA+GGG 0.631600 4:-4923825 None:intergenic
TGATGTCGCAGCCCAGATCG+TGG 0.634963 4:+4925152 MsG0480018440.01.T01:CDS
CTCAGGGTTATGAAGTACAA+AGG 0.637097 4:+4924859 MsG0480018440.01.T01:CDS
CATTATATAACTCAATCACA+AGG 0.654704 4:+4923919 MsG0480018440.01.T01:five_prime_UTR
TGATGAGTGGGAATGAGGCA+AGG 0.659052 4:+4925313 MsG0480018440.01.T01:CDS
AAGTAAATATGGCTTTGCGA+AGG 0.659208 4:-4924173 None:intergenic
ACACTACCCAGACGTAACAC+CGG 0.666494 4:-4925544 None:intergenic
GTACATTATAAAAGCTCCGG+AGG 0.668840 4:+4925371 MsG0480018440.01.T01:CDS
TGGATCCTCAAAACACGGAG+AGG 0.681597 4:-4923826 None:intergenic
ATGAGGCAAGGTATTCAGCA+GGG 0.682721 4:+4925325 MsG0480018440.01.T01:CDS
AACCATAAATTCCTTCTCCG+AGG 0.691780 4:+4924738 MsG0480018440.01.T01:CDS
TCACGCTCGAGAAGGCGTGG+GGG 0.693622 4:+4925461 MsG0480018440.01.T01:CDS
AAGACTGGATCCTCAAAACA+CGG 0.694776 4:-4923831 None:intergenic
GTAGCTTAGTCTCTAAAGGG+AGG 0.695642 4:-4924215 None:intergenic
AGGTGTTGAAAAGTACATGG+AGG 0.723372 4:+4924810 MsG0480018440.01.T01:CDS
TTATGAGAGGATGGCCATCG+AGG 0.726896 4:+4924296 MsG0480018440.01.T01:CDS
TGGAACATGTAATAGCAACG+TGG 0.779830 4:-4923747 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTAAAAAGATGATTT+TGG + Chr4:4924780-4924799 MsG0480018440.01.T01:CDS 10.0%
!!! TAAACATTTTAATATTATCA+AGG + Chr4:4923873-4923892 MsG0480018440.01.T01:five_prime_UTR 10.0%
!!! TTTAAAATATTAACAACTTT+AGG - Chr4:4924435-4924454 None:intergenic 10.0%
!! AAAAGCAAATCAAATTAATT+AGG - Chr4:4924711-4924730 None:intergenic 15.0%
!! AAAGCAAATCAAATTAATTA+GGG - Chr4:4924710-4924729 None:intergenic 15.0%
!! AATAATAAATTTCAACAACA+TGG - Chr4:4925196-4925215 None:intergenic 15.0%
!! ACACATCATATATATATTTA+TGG - Chr4:4925690-4925709 None:intergenic 15.0%
!! ATTTATAAATAACCATCAAT+TGG + Chr4:4925083-4925102 MsG0480018440.01.T01:CDS 15.0%
!! GTTGTTGAAATTTATTATTA+TGG + Chr4:4925197-4925216 MsG0480018440.01.T01:intron 15.0%
!! TAATTTCCTAATTTGATTAA+GGG - Chr4:4923976-4923995 None:intergenic 15.0%
!! TTAATCAAATTAGGAAATTA+GGG + Chr4:4923976-4923995 MsG0480018440.01.T01:five_prime_UTR 15.0%
!!! TATTAGTTCTAATGATAAAT+AGG - Chr4:4924673-4924692 None:intergenic 15.0%
!! CTAATTTCCTAATTTGATTA+AGG - Chr4:4923977-4923996 None:intergenic 20.0%
!! CTTAATCAAATTAGGAAATT+AGG + Chr4:4923975-4923994 MsG0480018440.01.T01:five_prime_UTR 20.0%
!! TATAGCTTATGTTATTAAGA+GGG + Chr4:4925660-4925679 MsG0480018440.01.T01:three_prime_UTR 20.0%
!!! ACAAATTTTTATCAAGTTCA+AGG - Chr4:4925738-4925757 None:intergenic 20.0%
!!! TTGATGGTTATTTATAAATG+AGG - Chr4:4925082-4925101 None:intergenic 20.0%
! AGGTTATTGAAGTCAATTAT+TGG - Chr4:4924045-4924064 None:intergenic 25.0%
! ATTTACTTCTCAAATTACAC+CGG + Chr4:4925525-4925544 MsG0480018440.01.T01:three_prime_UTR 25.0%
! CATATCAAAGTCAATAAAAG+TGG + Chr4:4923768-4923787 MsG0480018440.01.T01:five_prime_UTR 25.0%
! CATTATATAACTCAATCACA+AGG + Chr4:4923919-4923938 MsG0480018440.01.T01:five_prime_UTR 25.0%
! CTATAGCTTATGTTATTAAG+AGG + Chr4:4925659-4925678 MsG0480018440.01.T01:three_prime_UTR 25.0%
! TATAAATGAGGAATAGTGAA+TGG - Chr4:4925070-4925089 None:intergenic 25.0%
! TCAATCAAGATATAATGTTG+AGG - Chr4:4924398-4924417 None:intergenic 25.0%
! TGTAATTTGAGAAGTAAATG+TGG - Chr4:4925524-4925543 None:intergenic 25.0%
! TTTATAATGTACCCTTCTTT+GGG - Chr4:4925363-4925382 None:intergenic 25.0%
!! ATTTCTCATGTAAATTTTGC+AGG + Chr4:4925248-4925267 MsG0480018440.01.T01:intron 25.0%
!! TATATGTTGTTTGCATTCAT+TGG + Chr4:4925758-4925777 MsG0480018440.01.T01:three_prime_UTR 25.0%
!! TTTTATAATGTACCCTTCTT+TGG - Chr4:4925364-4925383 None:intergenic 25.0%
!!! AAGATGATTTTGGAAAGTTT+AGG + Chr4:4924790-4924809 MsG0480018440.01.T01:CDS 25.0%
!!! AATTATTGGAAGCTTTAGAA+TGG - Chr4:4924031-4924050 None:intergenic 25.0%
!!! CACTTTTATTGACTTTGATA+TGG - Chr4:4923770-4923789 None:intergenic 25.0%
!!! CTAAAATTTTTGTTTCCATC+CGG - Chr4:4924369-4924388 None:intergenic 25.0%
!!! TCCAATGATAAAACTTGTTA+AGG - Chr4:4924534-4924553 None:intergenic 25.0%
!!! TCCTTAACAAGTTTTATCAT+TGG + Chr4:4924530-4924549 MsG0480018440.01.T01:intron 25.0%
AAGTATTACTACTCTCATGA+AGG + Chr4:4925617-4925636 MsG0480018440.01.T01:three_prime_UTR 30.0%
ACATTAACAACTCTTAAGAC+TGG - Chr4:4923849-4923868 None:intergenic 30.0%
ATGTGAACATTGAAAGCAAA+AGG - Chr4:4923801-4923820 None:intergenic 30.0%
CAAAAGGCTTAAAAAGCAAA+GGG - Chr4:4925416-4925435 None:intergenic 30.0%
CAACACAATACTTCTTACAA+AGG - Chr4:4925790-4925809 None:intergenic 30.0%
CATATTGTACCAAAATCAAG+TGG + Chr4:4924942-4924961 MsG0480018440.01.T01:CDS 30.0%
CTCTTCTAGTGAAGTAAATA+TGG - Chr4:4924187-4924206 None:intergenic 30.0%
CTTCATTAGTTACCAATTGA+TGG - Chr4:4925098-4925117 None:intergenic 30.0%
GCATTACCCTTAATCAAATT+AGG + Chr4:4923967-4923986 MsG0480018440.01.T01:five_prime_UTR 30.0%
TCAAAAGGCTTAAAAAGCAA+AGG - Chr4:4925417-4925436 None:intergenic 30.0%
TCAAATTAGGAAATTAGGGA+AGG + Chr4:4923980-4923999 MsG0480018440.01.T01:five_prime_UTR 30.0%
TGTGAACATTGAAAGCAAAA+GGG - Chr4:4923800-4923819 None:intergenic 30.0%
TTATAATGTACCCTTCTTTG+GGG - Chr4:4925362-4925381 None:intergenic 30.0%
! CGGATGGAAACAAAAATTTT+AGG + Chr4:4924367-4924386 MsG0480018440.01.T01:CDS 30.0%
!! AACAAGTTTTATCATTGGAG+AGG + Chr4:4924535-4924554 MsG0480018440.01.T01:intron 30.0%
!! CACTTGATTTTGGTACAATA+TGG - Chr4:4924944-4924963 None:intergenic 30.0%
!! GTTTACAAAGTTTTATAGCC+AGG - Chr4:4924643-4924662 None:intergenic 30.0%
!! TTTAGGTGTTGAAAAGTACA+TGG + Chr4:4924807-4924826 MsG0480018440.01.T01:CDS 30.0%
AAAGCATGACCAATATCTTG+TGG + Chr4:4924343-4924362 MsG0480018440.01.T01:CDS 35.0%
AGGAACTCAGCATAATCAAA+AGG - Chr4:4925432-4925451 None:intergenic 35.0%
AGGGTACATTATAAAAGCTC+CGG + Chr4:4925368-4925387 MsG0480018440.01.T01:CDS 35.0%
ATGCTTGCTTAGTTTAAGCT+AGG - Chr4:4923951-4923970 None:intergenic 35.0%
CAAACAAGTGACACAAAACT+AGG + Chr4:4924886-4924905 MsG0480018440.01.T01:CDS 35.0%
CATGAGAGTAGTAATACTTG+AGG - Chr4:4925616-4925635 None:intergenic 35.0%
GGAAAGCAACTTATTTCCTT+TGG - Chr4:4923729-4923748 None:intergenic 35.0%
TAAGATATTTGCATCCTCGA+TGG - Chr4:4924313-4924332 None:intergenic 35.0%
TATAATGTACCCTTCTTTGG+GGG - Chr4:4925361-4925380 None:intergenic 35.0%
TGACTTCAATAACCTCAACT+TGG + Chr4:4924050-4924069 MsG0480018440.01.T01:CDS 35.0%
TGAGTAGCTTAGTCTCTAAA+GGG - Chr4:4924221-4924240 None:intergenic 35.0%
TGCTAATGCCTTATAGACTT+GGG - Chr4:4924109-4924128 None:intergenic 35.0%
TTAGAGATGATGACCAAAGA+TGG + Chr4:4924970-4924989 MsG0480018440.01.T01:CDS 35.0%
TTGAGTAGCTTAGTCTCTAA+AGG - Chr4:4924222-4924241 None:intergenic 35.0%
TTGTACCAAAATCAAGTGGA+AGG + Chr4:4924946-4924965 MsG0480018440.01.T01:CDS 35.0%
! AAGTAAATATGGCTTTGCGA+AGG - Chr4:4924176-4924195 None:intergenic 35.0%
! CTAAACCTTCCACTTGATTT+TGG - Chr4:4924954-4924973 None:intergenic 35.0%
! GTGTCTAATAAGCCTTATGA+TGG + Chr4:4924243-4924262 MsG0480018440.01.T01:CDS 35.0%
! TATAAGGCATTAGCAGAGTA+TGG + Chr4:4924114-4924133 MsG0480018440.01.T01:CDS 35.0%
! TCATGTAAATTTTGCAGGCA+TGG + Chr4:4925253-4925272 MsG0480018440.01.T01:intron 35.0%
!!! AGTTTTGTGTCACTTGTTTG+AGG - Chr4:4924886-4924905 None:intergenic 35.0%
!!! GTTTTGTGTCACTTGTTTGA+GGG - Chr4:4924885-4924904 None:intergenic 35.0%
AACCATAAATTCCTTCTCCG+AGG + Chr4:4924738-4924757 MsG0480018440.01.T01:CDS 40.0%
AAGACTGGATCCTCAAAACA+CGG - Chr4:4923834-4923853 None:intergenic 40.0%
ACAAAGTTCTTGTCAGTGTG+TGG - Chr4:4924919-4924938 None:intergenic 40.0%
ACTCAACCAATTACCATCTC+AGG + Chr4:4924842-4924861 MsG0480018440.01.T01:CDS 40.0%
AGCTACAAGTCTTCTTCTTC+AGG + Chr4:4925003-4925022 MsG0480018440.01.T01:CDS 40.0%
AGTGAAGTCCCAAGTCTATA+AGG + Chr4:4924098-4924117 MsG0480018440.01.T01:CDS 40.0%
AGTTCCACTTTATGAGAGGA+TGG + Chr4:4924287-4924306 MsG0480018440.01.T01:CDS 40.0%
ATCCAACTCAATTAGCTCCT+CGG - Chr4:4924758-4924777 None:intergenic 40.0%
CAAGTTTCTTCAAAGTGACC+TGG + Chr4:4924622-4924641 MsG0480018440.01.T01:intron 40.0%
CATAACCCTGAGATGGTAAT+TGG - Chr4:4924851-4924870 None:intergenic 40.0%
CTCAACCAATTACCATCTCA+GGG + Chr4:4924843-4924862 MsG0480018440.01.T01:CDS 40.0%
CTCAGGGTTATGAAGTACAA+AGG + Chr4:4924859-4924878 MsG0480018440.01.T01:CDS 40.0%
CTCTCATAAAGTGGAACTAC+AGG - Chr4:4924285-4924304 None:intergenic 40.0%
CTGCTAATGCCTTATAGACT+TGG - Chr4:4924110-4924129 None:intergenic 40.0%
CTGTAGTTCCACTTTATGAG+AGG + Chr4:4924283-4924302 MsG0480018440.01.T01:CDS 40.0%
GACTTCACTAACTCCCAATT+GGG - Chr4:4924087-4924106 None:intergenic 40.0%
GCTTATCCATTGTCCATCTT+TGG - Chr4:4924986-4925005 None:intergenic 40.0%
GTACATTATAAAAGCTCCGG+AGG + Chr4:4925371-4925390 MsG0480018440.01.T01:CDS 40.0%
TGACCAAGATAGCCATCATA+AGG - Chr4:4924258-4924277 None:intergenic 40.0%
TGATGACCAAAGATGGACAA+TGG + Chr4:4924977-4924996 MsG0480018440.01.T01:CDS 40.0%
TGGAACATGTAATAGCAACG+TGG - Chr4:4923750-4923769 None:intergenic 40.0%
TGTACTTCATAACCCTGAGA+TGG - Chr4:4924858-4924877 None:intergenic 40.0%
TTAGGAAATTAGGGAAGGAC+CGG + Chr4:4923985-4924004 MsG0480018440.01.T01:five_prime_UTR 40.0%
! AAGCCTTATGATGGCTATCT+TGG + Chr4:4924252-4924271 MsG0480018440.01.T01:CDS 40.0%
! AAGTATTTTCACGCTCGAGA+AGG + Chr4:4925453-4925472 MsG0480018440.01.T01:CDS 40.0%
! ATTTTGCAGGCATGGTCAAA+CGG + Chr4:4925261-4925280 MsG0480018440.01.T01:intron 40.0%
! TAACTCCCAATTGGGACTTT+TGG - Chr4:4924079-4924098 None:intergenic 40.0%
! TTCTGAGCCCATATTTTCAC+CGG - Chr4:4924007-4924026 None:intergenic 40.0%
!! AGGTGTTGAAAAGTACATGG+AGG + Chr4:4924810-4924829 MsG0480018440.01.T01:CDS 40.0%
!! GGCAGTTTTGTAGTTGTGAT+TGG + Chr4:4925024-4925043 MsG0480018440.01.T01:CDS 40.0%
AAATGCATGTGACCACGATC+TGG - Chr4:4925167-4925186 None:intergenic 45.0%
AATGCATGTGACCACGATCT+GGG - Chr4:4925166-4925185 None:intergenic 45.0%
ACTACTCTCATGAAGGCCAA+AGG + Chr4:4925624-4925643 MsG0480018440.01.T01:three_prime_UTR 45.0%
ATAGCTCAAACCCATCCCTT+TGG - Chr4:4925643-4925662 None:intergenic 45.0%
ATGGCCATCCTCTCATAAAG+TGG - Chr4:4924294-4924313 None:intergenic 45.0%
CATGACCAATATCTTGTGGC+CGG + Chr4:4924347-4924366 MsG0480018440.01.T01:CDS 45.0%
CTACTCTCATGAAGGCCAAA+GGG + Chr4:4925625-4925644 MsG0480018440.01.T01:three_prime_UTR 45.0%
CTCCTCGGAGAAGGAATTTA+TGG - Chr4:4924743-4924762 None:intergenic 45.0%
CTCGAGCGTGAAAATACTTG+AGG - Chr4:4925452-4925471 None:intergenic 45.0%
GGAAGCCAAAAGTCCCAATT+GGG + Chr4:4924071-4924090 MsG0480018440.01.T01:CDS 45.0%
GGAAGGACCGGTGAAAATAT+GGG + Chr4:4923997-4924016 MsG0480018440.01.T01:exon 45.0%
GGACTTCACTAACTCCCAAT+TGG - Chr4:4924088-4924107 None:intergenic 45.0%
TGGAAGCCAAAAGTCCCAAT+TGG + Chr4:4924070-4924089 MsG0480018440.01.T01:CDS 45.0%
TGTTCTCTACCCCCAAAGAA+GGG + Chr4:4925349-4925368 MsG0480018440.01.T01:CDS 45.0%
TTGTTCTCTACCCCCAAAGA+AGG + Chr4:4925348-4925367 MsG0480018440.01.T01:CDS 45.0%
! AATGAGGCAAGGTATTCAGC+AGG + Chr4:4925324-4925343 MsG0480018440.01.T01:CDS 45.0%
! ATGAGGCAAGGTATTCAGCA+GGG + Chr4:4925325-4925344 MsG0480018440.01.T01:CDS 45.0%
! ATGGCTTTGCGAAGGTGTAA+AGG - Chr4:4924168-4924187 None:intergenic 45.0%
! GTAGCTTAGTCTCTAAAGGG+AGG - Chr4:4924218-4924237 None:intergenic 45.0%
! TTTTGCAGGCATGGTCAAAC+GGG + Chr4:4925262-4925281 MsG0480018440.01.T01:intron 45.0%
!! AATTACACCGGTGTTACGTC+TGG + Chr4:4925537-4925556 MsG0480018440.01.T01:three_prime_UTR 45.0%
!! ATTACACCGGTGTTACGTCT+GGG + Chr4:4925538-4925557 MsG0480018440.01.T01:three_prime_UTR 45.0%
!!! GACTTTTGGCTTCCAAGTTG+AGG - Chr4:4924065-4924084 None:intergenic 45.0%
ACACTACCCAGACGTAACAC+CGG - Chr4:4925547-4925566 None:intergenic 50.0%
ACCAATATCTTGTGGCCGGA+TGG + Chr4:4924351-4924370 MsG0480018440.01.T01:CDS 50.0%
CATTCCCACTCATCATCACC+CGG - Chr4:4925308-4925327 None:intergenic 50.0%
CTCAATTAGCTCCTCGGAGA+AGG - Chr4:4924752-4924771 None:intergenic 50.0%
CTCATCATCACCCGGTGAAA+TGG - Chr4:4925300-4925319 None:intergenic 50.0%
CTCATGAAGGCCAAAGGGAT+GGG + Chr4:4925630-4925649 MsG0480018440.01.T01:three_prime_UTR 50.0%
CTCCGAGGAGCTAATTGAGT+TGG + Chr4:4924753-4924772 MsG0480018440.01.T01:CDS 50.0%
GGATCCTCAAAACACGGAGA+GGG - Chr4:4923828-4923847 None:intergenic 50.0%
GGGAAGGACCGGTGAAAATA+TGG + Chr4:4923996-4924015 MsG0480018440.01.T01:exon 50.0%
TATAAAAGCTCCGGAGGAGC+TGG + Chr4:4925377-4925396 MsG0480018440.01.T01:CDS 50.0%
TCCATCCGGCCACAAGATAT+TGG - Chr4:4924355-4924374 None:intergenic 50.0%
TCTCATGAAGGCCAAAGGGA+TGG + Chr4:4925629-4925648 MsG0480018440.01.T01:three_prime_UTR 50.0%
TGATGAGTGGGAATGAGGCA+AGG + Chr4:4925313-4925332 MsG0480018440.01.T01:CDS 50.0%
TGGATCCTCAAAACACGGAG+AGG - Chr4:4923829-4923848 None:intergenic 50.0%
TTATGAGAGGATGGCCATCG+AGG + Chr4:4924296-4924315 MsG0480018440.01.T01:CDS 50.0%
! GGTGATGATGAGTGGGAATG+AGG + Chr4:4925308-4925327 MsG0480018440.01.T01:CDS 50.0%
! TCTTGTCAGTGTGTGGACTG+AGG - Chr4:4924912-4924931 None:intergenic 50.0%
! TTCACCGGGTGATGATGAGT+GGG + Chr4:4925301-4925320 MsG0480018440.01.T01:CDS 50.0%
! TTTCACCGGGTGATGATGAG+TGG + Chr4:4925300-4925319 MsG0480018440.01.T01:CDS 50.0%
CCTCAAAACACGGAGAGGGA+TGG - Chr4:4923824-4923843 None:intergenic 55.0%
CGGTCTGTGCGCACTTATTG+TGG + Chr4:4925486-4925505 MsG0480018440.01.T01:CDS 55.0%
GCTGCATTCGCCATTTCACC+GGG + Chr4:4925287-4925306 MsG0480018440.01.T01:CDS 55.0%
GGCTGCATTCGCCATTTCAC+CGG + Chr4:4925286-4925305 MsG0480018440.01.T01:CDS 55.0%
! CCATCCCTCTCCGTGTTTTG+AGG + Chr4:4923821-4923840 MsG0480018440.01.T01:five_prime_UTR 55.0%
! TTTCACGCTCGAGAAGGCGT+GGG + Chr4:4925459-4925478 MsG0480018440.01.T01:CDS 55.0%
! TTTTCACGCTCGAGAAGGCG+TGG + Chr4:4925458-4925477 MsG0480018440.01.T01:CDS 55.0%
AAAAGCTCCGGAGGAGCTGG+TGG + Chr4:4925380-4925399 MsG0480018440.01.T01:CDS 60.0%
TCCTCATCCACCAGCTCCTC+CGG - Chr4:4925390-4925409 None:intergenic 60.0%
TGATGTCGCAGCCCAGATCG+TGG + Chr4:4925152-4925171 MsG0480018440.01.T01:CDS 60.0%
TGCAGGCATGGTCAAACGGG+AGG + Chr4:4925265-4925284 MsG0480018440.01.T01:intron 60.0%
! TTCACGCTCGAGAAGGCGTG+GGG + Chr4:4925460-4925479 MsG0480018440.01.T01:CDS 60.0%
! TCACGCTCGAGAAGGCGTGG+GGG + Chr4:4925461-4925480 MsG0480018440.01.T01:CDS 65.0%
! TCCGGAGGAGCTGGTGGATG+AGG + Chr4:4925386-4925405 MsG0480018440.01.T01:CDS 65.0%
! CTCGAGAAGGCGTGGGGGCT+CGG + Chr4:4925466-4925485 MsG0480018440.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 4923716 4925842 4923716 ID=MsG0480018440.01;Name=MsG0480018440.01
Chr4 mRNA 4923716 4925842 4923716 ID=MsG0480018440.01.T01;Parent=MsG0480018440.01;Name=MsG0480018440.01.T01;_AED=0.49;_eAED=0.50;_QI=299|0.5|0.66|1|1|1|3|327|352
Chr4 exon 4923716 4924388 4923716 ID=MsG0480018440.01.T01:exon:1316;Parent=MsG0480018440.01.T01
Chr4 exon 4924735 4925173 4924735 ID=MsG0480018440.01.T01:exon:1317;Parent=MsG0480018440.01.T01
Chr4 exon 4925270 4925842 4925270 ID=MsG0480018440.01.T01:exon:1318;Parent=MsG0480018440.01.T01
Chr4 five_prime_UTR 4923716 4924014 4923716 ID=MsG0480018440.01.T01:five_prime_utr;Parent=MsG0480018440.01.T01
Chr4 CDS 4924015 4924388 4924015 ID=MsG0480018440.01.T01:cds;Parent=MsG0480018440.01.T01
Chr4 CDS 4924735 4925173 4924735 ID=MsG0480018440.01.T01:cds;Parent=MsG0480018440.01.T01
Chr4 CDS 4925270 4925515 4925270 ID=MsG0480018440.01.T01:cds;Parent=MsG0480018440.01.T01
Chr4 three_prime_UTR 4925516 4925842 4925516 ID=MsG0480018440.01.T01:three_prime_utr;Parent=MsG0480018440.01.T01
Gene Sequence

>MsG0480018440.01.T01

ATGGGCTCAGAAACCATTCTAAAGCTTCCAATAATTGACTTCAATAACCTCAACTTGGAAGCCAAAAGTCCCAATTGGGAGTTAGTGAAGTCCCAAGTCTATAAGGCATTAGCAGAGTATGGTTGCTTCGAAGCAATTTTTGATAAAGTTCCTTTACACCTTCGCAAAGCCATATTTACTTCACTAGAAGAGCTCTTTGACCTCCCTTTAGAGACTAAGCTACTCAATGTGTCTAATAAGCCTTATGATGGCTATCTTGGTCAATATCCTGTAGTTCCACTTTATGAGAGGATGGCCATCGAGGATGCAAATATCTTAGAGAAAGTAAAAAGCATGACCAATATCTTGTGGCCGGATGGAAACAAAAATTTTAGTGAAACCATAAATTCCTTCTCCGAGGAGCTAATTGAGTTGGATCAAATTATTAAAAAGATGATTTTGGAAAGTTTAGGTGTTGAAAAGTACATGGAGGAACACATGAACTCAACCAATTACCATCTCAGGGTTATGAAGTACAAAGGCCCTCAAACAAGTGACACAAAACTAGGCCTCAGTCCACACACTGACAAGAACTTTGTGACCATATTGTACCAAAATCAAGTGGAAGGTTTAGAGATGATGACCAAAGATGGACAATGGATAAGCTACAAGTCTTCTTCTTCAGGCAGTTTTGTAGTTGTGATTGGTGATTCTATGCATGTAAATTCCATTCACTATTCCTCATTTATAAATAACCATCAATTGGTAACTAATGAAGTTTTAAATCAGTGTCATGATAGCATAAAAATCTCTGATGTCGCAGCCCAGATCGTGGCATGGTCAAACGGGAGGCTGCATTCGCCATTTCACCGGGTGATGATGAGTGGGAATGAGGCAAGGTATTCAGCAGGGTTGTTCTCTACCCCCAAAGAAGGGTACATTATAAAAGCTCCGGAGGAGCTGGTGGATGAGGAGCACCCTTTGCTTTTTAAGCCTTTTGATTATGCTGAGTTCCTCAAGTATTTTCACGCTCGAGAAGGCGTGGGGGCTCGGTCTGTGCGCACTTATTGTGGTGTTTGA

Protein sequence

>MsG0480018440.01.T01

MGSETILKLPIIDFNNLNLEAKSPNWELVKSQVYKALAEYGCFEAIFDKVPLHLRKAIFTSLEELFDLPLETKLLNVSNKPYDGYLGQYPVVPLYERMAIEDANILEKVKSMTNILWPDGNKNFSETINSFSEELIELDQIIKKMILESLGVEKYMEEHMNSTNYHLRVMKYKGPQTSDTKLGLSPHTDKNFVTILYQNQVEGLEMMTKDGQWISYKSSSSGSFVVVIGDSMHVNSIHYSSFINNHQLVTNEVLNQCHDSIKISDVAAQIVAWSNGRLHSPFHRVMMSGNEARYSAGLFSTPKEGYIIKAPEELVDEEHPLLFKPFDYAEFLKYFHAREGVGARSVRTYCGV*