AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040888.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040888.01.T01 MTR_7g100450 81.481 297 16 4 1 269 1 286 4.00e-139 393
MsG0780040888.01.T01 MTR_7g100450 80.498 241 14 3 1 213 1 236 4.03e-105 305
MsG0780040888.01.T01 MTR_1g067560 50.000 292 85 10 1 264 1 259 1.31e-70 218
MsG0780040888.01.T01 MTR_4g062450 34.496 258 116 6 1 249 1 214 6.29e-33 120
MsG0780040888.01.T01 MTR_6g086020 54.688 64 29 0 186 249 65 128 2.62e-21 87.4
MsG0780040888.01.T01 MTR_8g103820 53.125 64 30 0 186 249 66 129 1.19e-20 85.5
MsG0780040888.01.T01 MTR_7g013660 40.000 85 50 1 184 267 2 86 4.48e-14 67.8
MsG0780040888.01.T01 MTR_3g117890 43.836 73 39 1 186 256 26 98 3.99e-11 60.5
MsG0780040888.01.T01 MTR_4g073040 38.372 86 51 1 173 256 15 100 4.68e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040888.01.T01 AT2G37390 39.231 260 131 5 1 249 1 244 1.36e-48 162
MsG0780040888.01.T01 AT2G37390 41.245 257 129 7 1 249 1 243 4.08e-48 160
MsG0780040888.01.T01 AT3G53530 35.662 272 113 9 1 249 1 233 2.35e-36 130
MsG0780040888.01.T01 AT5G02600 52.555 137 45 3 136 252 180 316 2.17e-35 129
MsG0780040888.01.T01 AT5G02600 52.555 137 45 3 136 252 180 316 2.17e-35 129
MsG0780040888.01.T01 AT3G53530 35.531 273 113 10 1 249 1 234 1.52e-34 125
MsG0780040888.01.T01 AT2G28660 69.014 71 22 0 179 249 176 246 4.74e-29 111
MsG0780040888.01.T01 AT3G24450 50.000 64 32 0 186 249 74 137 1.12e-16 75.1
MsG0780040888.01.T01 AT1G66240 43.038 79 42 2 173 249 20 97 1.02e-14 68.9
MsG0780040888.01.T01 AT3G56240 46.970 66 34 1 186 250 3 68 7.09e-14 67.0
MsG0780040888.01.T01 AT3G56240 46.970 66 34 1 186 250 3 68 7.09e-14 67.0
MsG0780040888.01.T01 AT5G27690 40.449 89 46 3 163 250 13 95 6.62e-13 68.2

Find 50 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTGTTGTACTAGATTT+TGG 0.170922 7:-83856347 None:intergenic
ATTAGATTATGACCCTGTTT+TGG 0.240827 7:+83856229 MsG0780040888.01.T01:CDS
GTATGCTTTGAGTCTGAATT+AGG 0.272033 7:+83857700 MsG0780040888.01.T01:three_prime_UTR
AAATGATGTGACAAAATTAA+AGG 0.289010 7:+83857870 MsG0780040888.01.T01:three_prime_UTR
CCAGAAGTTGCTTCATCAAT+TGG 0.294671 7:+83857606 MsG0780040888.01.T01:CDS
GATTTGCATACCTTGCATTC+TGG 0.322525 7:-83856573 None:intergenic
ACCAACTACTGTAACCTTCT+TGG 0.326525 7:-83857523 None:intergenic
GCTTGGTGAGACAGTTTCTT+TGG 0.328826 7:+83856199 MsG0780040888.01.T01:intron
ATGGACAAGTTTAAGGTTGA+TGG 0.338522 7:-83855944 None:intergenic
AGGTGAAGACTGCACAAATT+TGG 0.341639 7:+83857583 MsG0780040888.01.T01:CDS
TCTACCACCAAAGTGATTAA+TGG 0.359645 7:-83855827 None:intergenic
GTTGCAGATTGTGGTGTTAA+GGG 0.363212 7:+83856502 MsG0780040888.01.T01:intron
TGTTGCAGATTGTGGTGTTA+AGG 0.365637 7:+83856501 MsG0780040888.01.T01:intron
CCAATTGATGAAGCAACTTC+TGG 0.381921 7:-83857606 None:intergenic
AGAAACTTTATCTTTGCATA+AGG 0.405664 7:+83857804 MsG0780040888.01.T01:three_prime_UTR
CCTTCTTAAATACTATCAAC+TGG 0.414506 7:-83856120 None:intergenic
ACCTTAGTTAAACCCAAAAC+AGG 0.426654 7:-83856242 None:intergenic
AAGGTTGTGAAGGGAAGGTT+AGG 0.448311 7:+83856540 MsG0780040888.01.T01:CDS
ATGATTAGTGTTAAGACATA+TGG 0.448878 7:-83855773 None:intergenic
TCACCCGTTGTGATGAGAAA+TGG 0.454829 7:-83857921 None:intergenic
ATGCTTGCCATTACGCTCAA+TGG 0.459884 7:-83857555 None:intergenic
GCCAAGAAGGTTACAGTAGT+TGG 0.460899 7:+83857522 MsG0780040888.01.T01:CDS
GTGTCAGTGAGATCTCTTGC+TGG 0.463146 7:-83855895 None:intergenic
TCCAACACCATTAATCACTT+TGG 0.465049 7:+83855820 MsG0780040888.01.T01:CDS
GGCTGCAAAGTCTATGTTGA+AGG 0.474842 7:-83857502 None:intergenic
GTTGCTTCATCAATTGGATC+TGG 0.476518 7:+83857612 MsG0780040888.01.T01:CDS
GGTGAGACAGTTTCTTTGGA+TGG 0.476989 7:+83856203 MsG0780040888.01.T01:intron
CATAGACTTTGCAGCCAAGA+AGG 0.492938 7:+83857509 MsG0780040888.01.T01:CDS
AGGGTTTCTCTACACTGTAA+AGG 0.497170 7:+83856521 MsG0780040888.01.T01:CDS
TGGACAAGTTTAAGGTTGAT+GGG 0.502719 7:-83855943 None:intergenic
AACACCATTAATCACTTTGG+TGG 0.517962 7:+83855823 MsG0780040888.01.T01:CDS
ACCAAAGTGATTAATGGTGT+TGG 0.523108 7:-83855821 None:intergenic
TAAAATCTCTTCAAAAGCTA+CGG 0.526871 7:-83857768 None:intergenic
GATGGGGTTGTGGCGATCAA+TGG 0.538267 7:-83855851 None:intergenic
CAAATATGATCTAATTGAAG+AGG 0.540737 7:+83857655 MsG0780040888.01.T01:exon
AGTTTAAGGTTGATGGGTGA+AGG 0.543572 7:-83855937 None:intergenic
GTTAAGACATATGGCTGTTG+AGG 0.547442 7:-83855764 None:intergenic
GATCTGTGATGATGGGGTTG+TGG 0.561276 7:-83855861 None:intergenic
TGTAACTCCATTGAGCGTAA+TGG 0.561591 7:+83857548 MsG0780040888.01.T01:CDS
CTGTAAAGGTTGTGAAGGGA+AGG 0.564183 7:+83856535 MsG0780040888.01.T01:CDS
CTACACTGTAAAGGTTGTGA+AGG 0.566064 7:+83856530 MsG0780040888.01.T01:CDS
AGGTTGATGGGTGAAGGAGA+AGG 0.573141 7:-83855931 None:intergenic
ATCTCACTGACACTGCTCCT+AGG 0.576489 7:+83855905 MsG0780040888.01.T01:CDS
TGAAGAGGAAAATAGACTGT+TGG 0.579155 7:+83857670 MsG0780040888.01.T01:three_prime_UTR
AAACATCTCTCCAGAATGCA+AGG 0.579496 7:+83856563 MsG0780040888.01.T01:CDS
CGTAATGGCAAGCATATCAA+AGG 0.592668 7:+83857563 MsG0780040888.01.T01:CDS
TACACTGTAAAGGTTGTGAA+GGG 0.606760 7:+83856531 MsG0780040888.01.T01:CDS
GGTGAAGGAGAAGGTGACCT+AGG 0.609366 7:-83855922 None:intergenic
CCTTAGTTAAACCCAAAACA+GGG 0.664376 7:-83856241 None:intergenic
AAAATCTAGTACAACAAACC+AGG 0.681480 7:+83856349 MsG0780040888.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAATTTAATCTTTAGTT+GGG - Chr7:83857093-83857112 None:intergenic 15.0%
!! AGGTTATATATGAATATTAT+TGG + Chr7:83856796-83856815 MsG0780040888.01.T01:intron 15.0%
!! TACAAAATTTAATCTTTAGT+TGG - Chr7:83857094-83857113 None:intergenic 15.0%
!! TTTCACATATAAGAAAAATA+AGG + Chr7:83856776-83856795 MsG0780040888.01.T01:intron 15.0%
!!! AAGAGATTTTATAGTTTAAT+TGG + Chr7:83857780-83857799 MsG0780040888.01.T01:three_prime_UTR 15.0%
!!! AATGTAATTAAATTTTCTCT+TGG - Chr7:83857846-83857865 None:intergenic 15.0%
!!! ACTAAAGATTAAATTTTGTA+TGG + Chr7:83857094-83857113 MsG0780040888.01.T01:intron 15.0%
!!! ATGTAATTAAATTTTCTCTT+GGG - Chr7:83857845-83857864 None:intergenic 15.0%
!!! TTAAGATACATTCTTTTAAA+TGG - Chr7:83856896-83856915 None:intergenic 15.0%
!! AAATGAAATAACCATGTTTA+TGG + Chr7:83857396-83857415 MsG0780040888.01.T01:intron 20.0%
!! AAATGATGTGACAAAATTAA+AGG + Chr7:83857870-83857889 MsG0780040888.01.T01:three_prime_UTR 20.0%
!! ACAAAAAAATAACGTTTAGA+AGG - Chr7:83856747-83856766 None:intergenic 20.0%
!! ATTTAATATCAAACACAAGT+GGG + Chr7:83857129-83857148 MsG0780040888.01.T01:intron 20.0%
!! TATTTAATATCAAACACAAG+TGG + Chr7:83857128-83857147 MsG0780040888.01.T01:intron 20.0%
!! TTTCATTTCGAAAAATCAAT+CGG - Chr7:83857384-83857403 None:intergenic 20.0%
!!! AACATGGATATAAATAGTTT+TGG - Chr7:83857331-83857350 None:intergenic 20.0%
!!! ATTTATATCCATGTTTTACA+TGG + Chr7:83857336-83857355 MsG0780040888.01.T01:intron 20.0%
!!! CTTTACAAACTAATTTTGTA+AGG - Chr7:83857210-83857229 None:intergenic 20.0%
!!! TAATTTTGTAAGGTTAAGTT+AGG - Chr7:83857200-83857219 None:intergenic 20.0%
!!! TATCGTTATTATTTTGTTGA+GGG - Chr7:83856863-83856882 None:intergenic 20.0%
!!! TTCAATATTTCTTTTTGCAT+TGG + Chr7:83857455-83857474 MsG0780040888.01.T01:intron 20.0%
!!! TTTTACAGAATCTTAATAAC+TGG - Chr7:83856667-83856686 None:intergenic 20.0%
!!! TTTTGCATTGGTAATTAAAT+GGG + Chr7:83857467-83857486 MsG0780040888.01.T01:intron 20.0%
!!! TTTTTGCATTGGTAATTAAA+TGG + Chr7:83857466-83857485 MsG0780040888.01.T01:intron 20.0%
! AAAAAATAACGTTTAGAAGG+TGG - Chr7:83856744-83856763 None:intergenic 25.0%
! AAAATTACCAAATCACTAAG+AGG - Chr7:83857304-83857323 None:intergenic 25.0%
! AATATGACCTATTTAGTAGT+GGG - Chr7:83857244-83857263 None:intergenic 25.0%
! AGAAACTTTATCTTTGCATA+AGG + Chr7:83857804-83857823 MsG0780040888.01.T01:three_prime_UTR 25.0%
! ATAGTATTTAAGAAGGAGTA+GGG + Chr7:83856127-83856146 MsG0780040888.01.T01:intron 25.0%
! ATGATTAGTGTTAAGACATA+TGG - Chr7:83855776-83855795 None:intergenic 25.0%
! ATTTGAATCCATGTAAAACA+TGG - Chr7:83857347-83857366 None:intergenic 25.0%
! CAAATATGATCTAATTGAAG+AGG + Chr7:83857655-83857674 MsG0780040888.01.T01:exon 25.0%
! TAAAATCTCTTCAAAAGCTA+CGG - Chr7:83857771-83857790 None:intergenic 25.0%
! TAATCCATGTTATTATCAAG+AGG - Chr7:83857281-83857300 None:intergenic 25.0%
!! GATTAAATTTTGTATGGAGA+TGG + Chr7:83857100-83857119 MsG0780040888.01.T01:intron 25.0%
!!! GTATCGTTATTATTTTGTTG+AGG - Chr7:83856864-83856883 None:intergenic 25.0%
AAAATCTAGTACAACAAACC+AGG + Chr7:83856349-83856368 MsG0780040888.01.T01:CDS 30.0%
AATTACTCCCACTACTAAAT+AGG + Chr7:83857234-83857253 MsG0780040888.01.T01:intron 30.0%
ATAAAACGCTACCATAAACA+TGG - Chr7:83857410-83857429 None:intergenic 30.0%
CCTTCTTAAATACTATCAAC+TGG - Chr7:83856123-83856142 None:intergenic 30.0%
CTTCAATACCATTTGATTGA+TGG - Chr7:83856628-83856647 None:intergenic 30.0%
GAATATGACCTATTTAGTAG+TGG - Chr7:83857245-83857264 None:intergenic 30.0%
GATAGTATTTAAGAAGGAGT+AGG + Chr7:83856126-83856145 MsG0780040888.01.T01:intron 30.0%
GTTATAGACTTATAGTAGCT+AGG - Chr7:83856722-83856741 None:intergenic 30.0%
TTTAACGAGGCTTATATCAA+AGG + Chr7:83856974-83856993 MsG0780040888.01.T01:intron 30.0%
! ATTAGATTATGACCCTGTTT+TGG + Chr7:83856229-83856248 MsG0780040888.01.T01:CDS 30.0%
! ATTTTCTCTTGGGAGAAATT+AGG - Chr7:83857835-83857854 None:intergenic 30.0%
! TCTGTTGTTTGTTTCATGTT+TGG + Chr7:83856458-83856477 MsG0780040888.01.T01:intron 30.0%
! TTAGATTATGACCCTGTTTT+GGG + Chr7:83856230-83856249 MsG0780040888.01.T01:CDS 30.0%
!! CCAGTTGATAGTATTTAAGA+AGG + Chr7:83856120-83856139 MsG0780040888.01.T01:intron 30.0%
!! CTTTTTCATGGACAAGTTTA+AGG - Chr7:83855954-83855973 None:intergenic 30.0%
!! TCTAGACAATGTTTTTAACG+AGG + Chr7:83856961-83856980 MsG0780040888.01.T01:intron 30.0%
!!! TGGTTTGTTGTACTAGATTT+TGG - Chr7:83856350-83856369 None:intergenic 30.0%
!!! TGTTTTTCTTGGCTTTTTCA+TGG - Chr7:83855966-83855985 None:intergenic 30.0%
AAATATCTTGACGAAGTAGG+AGG - Chr7:83856179-83856198 None:intergenic 35.0%
AACACCATTAATCACTTTGG+TGG + Chr7:83855823-83855842 MsG0780040888.01.T01:CDS 35.0%
ACCAAAGTGATTAATGGTGT+TGG - Chr7:83855824-83855843 None:intergenic 35.0%
ACCTTAGTTAAACCCAAAAC+AGG - Chr7:83856245-83856264 None:intergenic 35.0%
ACTTCGTCAAGATATTTGCT+TGG + Chr7:83856182-83856201 MsG0780040888.01.T01:intron 35.0%
AGCAAATATCTTGACGAAGT+AGG - Chr7:83856182-83856201 None:intergenic 35.0%
AGGCTTATATCAAAGGACAA+AGG + Chr7:83856981-83857000 MsG0780040888.01.T01:intron 35.0%
ATAATGATCCATAACCAGTG+AGG + Chr7:83857030-83857049 MsG0780040888.01.T01:intron 35.0%
CCTTAGTTAAACCCAAAACA+GGG - Chr7:83856244-83856263 None:intergenic 35.0%
TACACTGTAAAGGTTGTGAA+GGG + Chr7:83856531-83856550 MsG0780040888.01.T01:CDS 35.0%
TATTATCAAGAGGCCTACAT+CGG - Chr7:83857271-83857290 None:intergenic 35.0%
TCCAACACCATTAATCACTT+TGG + Chr7:83855820-83855839 MsG0780040888.01.T01:CDS 35.0%
TCTACCACCAAAGTGATTAA+TGG - Chr7:83855830-83855849 None:intergenic 35.0%
TGAAGAGGAAAATAGACTGT+TGG + Chr7:83857670-83857689 MsG0780040888.01.T01:three_prime_UTR 35.0%
TGATCAGACCATCAATCAAA+TGG + Chr7:83856617-83856636 MsG0780040888.01.T01:intron 35.0%
TGGATTACCTCTTAGTGATT+TGG + Chr7:83857294-83857313 MsG0780040888.01.T01:intron 35.0%
! ATGGACAAGTTTAAGGTTGA+TGG - Chr7:83855947-83855966 None:intergenic 35.0%
! ATTGGTAATTAAATGGGCAG+GGG + Chr7:83857473-83857492 MsG0780040888.01.T01:intron 35.0%
! CATTGGTAATTAAATGGGCA+GGG + Chr7:83857472-83857491 MsG0780040888.01.T01:intron 35.0%
! CTTTTTGGATCTGTGATGAT+GGG - Chr7:83855871-83855890 None:intergenic 35.0%
! GTATGCTTTGAGTCTGAATT+AGG + Chr7:83857700-83857719 MsG0780040888.01.T01:three_prime_UTR 35.0%
! GTGAATTTTGTTGCAGATTG+TGG + Chr7:83856493-83856512 MsG0780040888.01.T01:intron 35.0%
! TAGGCCTCTTGATAATAACA+TGG + Chr7:83857274-83857293 MsG0780040888.01.T01:intron 35.0%
! TCTTTTTGGATCTGTGATGA+TGG - Chr7:83855872-83855891 None:intergenic 35.0%
! TGGACAAGTTTAAGGTTGAT+GGG - Chr7:83855946-83855965 None:intergenic 35.0%
!! TTTTTGGATCTGTGATGATG+GGG - Chr7:83855870-83855889 None:intergenic 35.0%
!!! CTTTGAAGCAGTGTTTTTCT+TGG - Chr7:83855977-83855996 None:intergenic 35.0%
!!! TGTACTAGATTTTGGAACAG+AGG - Chr7:83856342-83856361 None:intergenic 35.0%
AAACATCTCTCCAGAATGCA+AGG + Chr7:83856563-83856582 MsG0780040888.01.T01:CDS 40.0%
ACCAACTACTGTAACCTTCT+TGG - Chr7:83857526-83857545 None:intergenic 40.0%
AGGGTTTCTCTACACTGTAA+AGG + Chr7:83856521-83856540 MsG0780040888.01.T01:CDS 40.0%
AGGTGAAGACTGCACAAATT+TGG + Chr7:83857583-83857602 MsG0780040888.01.T01:CDS 40.0%
CATGAAACAAACAACAGACC+TGG - Chr7:83856456-83856475 None:intergenic 40.0%
CCAATTGATGAAGCAACTTC+TGG - Chr7:83857609-83857628 None:intergenic 40.0%
CCAGAAGTTGCTTCATCAAT+TGG + Chr7:83857606-83857625 MsG0780040888.01.T01:CDS 40.0%
CGTAATGGCAAGCATATCAA+AGG + Chr7:83857563-83857582 MsG0780040888.01.T01:CDS 40.0%
CTACACTGTAAAGGTTGTGA+AGG + Chr7:83856530-83856549 MsG0780040888.01.T01:CDS 40.0%
GATTTGCATACCTTGCATTC+TGG - Chr7:83856576-83856595 None:intergenic 40.0%
GGAGGAGTGATTAAATCAGA+AGG - Chr7:83856161-83856180 None:intergenic 40.0%
GGAGTGATTAAATCAGAAGG+TGG - Chr7:83856158-83856177 None:intergenic 40.0%
GGTCATATTCTATCCGATGT+AGG + Chr7:83857255-83857274 MsG0780040888.01.T01:intron 40.0%
GTTAAGACATATGGCTGTTG+AGG - Chr7:83855767-83855786 None:intergenic 40.0%
GTTGCTTCATCAATTGGATC+TGG + Chr7:83857612-83857631 MsG0780040888.01.T01:CDS 40.0%
TGTAACTCCATTGAGCGTAA+TGG + Chr7:83857548-83857567 MsG0780040888.01.T01:CDS 40.0%
! GCATTGGTAATTAAATGGGC+AGG + Chr7:83857471-83857490 MsG0780040888.01.T01:intron 40.0%
! GTTGCAGATTGTGGTGTTAA+GGG + Chr7:83856502-83856521 MsG0780040888.01.T01:intron 40.0%
! TCTCTTGCTGGAGTTCTTTT+TGG - Chr7:83855886-83855905 None:intergenic 40.0%
! TGTTGCAGATTGTGGTGTTA+AGG + Chr7:83856501-83856520 MsG0780040888.01.T01:intron 40.0%
!! AACTCTAAGACATGTCTTGC+AGG - Chr7:83857168-83857187 None:intergenic 40.0%
!! AGTTTAAGGTTGATGGGTGA+AGG - Chr7:83855940-83855959 None:intergenic 40.0%
!!! CCCTGTTTTGGGTTTAACTA+AGG + Chr7:83856241-83856260 MsG0780040888.01.T01:CDS 40.0%
AAGGTTGTGAAGGGAAGGTT+AGG + Chr7:83856540-83856559 MsG0780040888.01.T01:CDS 45.0%
ATGCTTGCCATTACGCTCAA+TGG - Chr7:83857558-83857577 None:intergenic 45.0%
CATAGACTTTGCAGCCAAGA+AGG + Chr7:83857509-83857528 MsG0780040888.01.T01:CDS 45.0%
CTGTAAAGGTTGTGAAGGGA+AGG + Chr7:83856535-83856554 MsG0780040888.01.T01:CDS 45.0%
GAATGTGTACTCAAGCTCCT+CGG + Chr7:83856420-83856439 MsG0780040888.01.T01:intron 45.0%
GAGAGAGAGAGATACTAACC+TGG - Chr7:83856370-83856389 None:intergenic 45.0%
GCCAAGAAGGTTACAGTAGT+TGG + Chr7:83857522-83857541 MsG0780040888.01.T01:CDS 45.0%
GGCTGCAAAGTCTATGTTGA+AGG - Chr7:83857505-83857524 None:intergenic 45.0%
GGTGAGACAGTTTCTTTGGA+TGG + Chr7:83856203-83856222 MsG0780040888.01.T01:intron 45.0%
TAACCAGTGAGGTTGGATCT+AGG + Chr7:83857041-83857060 MsG0780040888.01.T01:intron 45.0%
TGATCCATAACCAGTGAGGT+TGG + Chr7:83857034-83857053 MsG0780040888.01.T01:intron 45.0%
! AGATCCAACCTCACTGGTTA+TGG - Chr7:83857041-83857060 None:intergenic 45.0%
! GCTTGGTGAGACAGTTTCTT+TGG + Chr7:83856199-83856218 MsG0780040888.01.T01:intron 45.0%
ATCTCACTGACACTGCTCCT+AGG + Chr7:83855905-83855924 MsG0780040888.01.T01:CDS 50.0%
GACCTGGTTATCATCAACCG+AGG - Chr7:83856440-83856459 None:intergenic 50.0%
GTGTCAGTGAGATCTCTTGC+TGG - Chr7:83855898-83855917 None:intergenic 50.0%
TCTCCTAGATCCAACCTCAC+TGG - Chr7:83857047-83857066 None:intergenic 50.0%
!! AGGTTGATGGGTGAAGGAGA+AGG - Chr7:83855934-83855953 None:intergenic 50.0%
!! CTCCTCGGTTGATGATAACC+AGG + Chr7:83856435-83856454 MsG0780040888.01.T01:intron 50.0%
!! GATCTGTGATGATGGGGTTG+TGG - Chr7:83855864-83855883 None:intergenic 50.0%
GATGGGGTTGTGGCGATCAA+TGG - Chr7:83855854-83855873 None:intergenic 55.0%
GGTGAAGGAGAAGGTGACCT+AGG - Chr7:83855925-83855944 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 83855730 83857931 83855730 ID=MsG0780040888.01;Name=MsG0780040888.01
Chr7 mRNA 83855730 83857931 83855730 ID=MsG0780040888.01.T01;Parent=MsG0780040888.01;Name=MsG0780040888.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0.66|0.5|1|1|1|4|263|269
Chr7 exon 83855730 83856129 83855730 ID=MsG0780040888.01.T01:exon:17739;Parent=MsG0780040888.01.T01
Chr7 exon 83856213 83856370 83856213 ID=MsG0780040888.01.T01:exon:17740;Parent=MsG0780040888.01.T01
Chr7 exon 83856509 83856584 83856509 ID=MsG0780040888.01.T01:exon:17741;Parent=MsG0780040888.01.T01
Chr7 exon 83857493 83857931 83857493 ID=MsG0780040888.01.T01:exon:17742;Parent=MsG0780040888.01.T01
Chr7 CDS 83855730 83856129 83855730 ID=MsG0780040888.01.T01:cds;Parent=MsG0780040888.01.T01
Chr7 CDS 83856213 83856370 83856213 ID=MsG0780040888.01.T01:cds;Parent=MsG0780040888.01.T01
Chr7 CDS 83856509 83856584 83856509 ID=MsG0780040888.01.T01:cds;Parent=MsG0780040888.01.T01
Chr7 CDS 83857493 83857668 83857493 ID=MsG0780040888.01.T01:cds;Parent=MsG0780040888.01.T01
Chr7 three_prime_UTR 83857669 83857931 83857669 ID=MsG0780040888.01.T01:three_prime_utr;Parent=MsG0780040888.01.T01
Gene Sequence

>MsG0780040888.01.T01

ATGAAAGGCATTGAAATCTTCTGTGCATCACAAGCCTCAACAGCCATATGTCTTAACACTAATCATGCTTCTTCTTCTTCTACTTCATCTTCCAACACCATTAATCACTTTGGTGGTAGAGCCATTGATCGCCACAACCCCATCATCACAGATCCAAAAAGAACTCCAGCAAGAGATCTCACTGACACTGCTCCTAGGTCACCTTCTCCTTCACCCATCAACCTTAAACTTGTCCATGAAAAAGCCAAGAAAAACACTGCTTCAAAGCTTAGTGATAAGAAAAAGAAAAATGCAACAAAGAGTACTCATGAATATGATCAGAAGAAGAAGAAAAGTACTACTACAACAGAAAAAGTGACTGAACATATTGCAAACAATTACTCTTCAAAACCAGTTGATATTTCTTTGGATGGTGTATTAGATTATGACCCTGTTTTGGGTTTAACTAAGGTTGATGATAATAAAAAGAAAGCTCAAGTGCTTCATGAAGATGAAGATAAACATTCATCTAAACAGTATTCAAGCTCCTCTGTTCCAAAATCTAGTACAACAAACCAGATTGTGGTGTTAAGGGTTTCTCTACACTGTAAAGGTTGTGAAGGGAAGGTTAGGAAACATCTCTCCAGAATGCAAGGGGTAACGTCCTTCAACATAGACTTTGCAGCCAAGAAGGTTACAGTAGTTGGTGATGTAACTCCATTGAGCGTAATGGCAAGCATATCAAAGGTGAAGACTGCACAAATTTGGCCAGAAGTTGCTTCATCAATTGGATCTGGTGCTGCTGAAGCAAAGAAAACAAATATGATCTAA

Protein sequence

>MsG0780040888.01.T01

MKGIEIFCASQASTAICLNTNHASSSSTSSSNTINHFGGRAIDRHNPIITDPKRTPARDLTDTAPRSPSPSPINLKLVHEKAKKNTASKLSDKKKKNATKSTHEYDQKKKKSTTTTEKVTEHIANNYSSKPVDISLDGVLDYDPVLGLTKVDDNKKKAQVLHEDEDKHSSKQYSSSSVPKSSTTNQIVVLRVSLHCKGCEGKVRKHLSRMQGVTSFNIDFAAKKVTVVGDVTPLSVMASISKVKTAQIWPEVASSIGSGAAEAKKTNMI*