AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680030356.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030356.01.T01 MTR_6g004930 95.606 569 13 5 1 561 1 565 0.0 1067
MsG0680030356.01.T01 MTR_6g004940 64.810 395 76 7 161 531 1 356 2.17e-135 398
MsG0680030356.01.T01 MTR_0004s0130 29.885 174 93 4 56 216 12 169 6.89e-19 90.5
MsG0680030356.01.T01 MTR_2g090360 31.579 171 105 3 49 216 6 167 1.36e-16 83.2
MsG0680030356.01.T01 MTR_2g090360 31.544 149 96 3 68 216 5 147 4.41e-15 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680030356.01.T01 AT3G01560 43.281 573 225 20 1 547 1 499 5.94e-91 289
MsG0680030356.01.T01 AT3G01560 44.651 430 167 14 125 547 5 370 2.40e-68 226
MsG0680030356.01.T01 AT5G14540 41.265 332 127 11 1 304 7 298 7.96e-56 197
MsG0680030356.01.T01 AT4G28300 31.325 166 103 3 55 214 14 174 1.20e-15 80.1
MsG0680030356.01.T01 AT4G28300 37.778 90 56 0 125 214 27 116 6.22e-15 77.8

Find 214 sgRNAs with CRISPR-Local

Find 479 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAATACGACGTCGTTTA+TGG 0.118460 6:+1042203 MsG0680030356.01.T01:exon
TCTGGATATGGTACATTATC+TGG 0.152917 6:+1047981 MsG0680030356.01.T01:CDS
ATCTTTGATTTGGGTTGATT+TGG 0.202225 6:+1048729 MsG0680030356.01.T01:three_prime_UTR
GGAGGTTGAGGAGGTGCATT+AGG 0.241389 6:-1047492 None:intergenic
GCTTATCCAGCACTGTATTT+AGG 0.248589 6:-1048301 None:intergenic
TTTCCACGTTATCTTTGATT+TGG 0.250493 6:+1048719 MsG0680030356.01.T01:three_prime_UTR
GGCAGTTGGTATTGCTGATT+TGG 0.254348 6:-1047633 None:intergenic
GTTCTCCTGGAGCTGGTAAC+AGG 0.264309 6:+1048174 MsG0680030356.01.T01:CDS
TCAATAAATAAAAGTGGATT+TGG 0.268544 6:+1048634 MsG0680030356.01.T01:three_prime_UTR
TTGCAGTTGAGGTGGATTTC+CGG 0.277046 6:-1047778 None:intergenic
CTAACTGTTAACAGATTTGA+TGG 0.282200 6:+1048692 MsG0680030356.01.T01:three_prime_UTR
TGAACAGGTGGTGGCAAGTA+TGG 0.300203 6:-1047597 None:intergenic
AGTGAGAATTACTTTGGAAT+TGG 0.300882 6:-1042478 None:intergenic
CAACCTTCCCAACAGTTCTA+TGG 0.307696 6:+1047903 MsG0680030356.01.T01:CDS
TGTGCAGAACTATGGTTCTT+TGG 0.308399 6:+1045405 MsG0680030356.01.T01:intron
GGTAAGGCATCCTGAATAAA+AGG 0.320758 6:-1048835 None:intergenic
TCTTTGATTTGGGTTGATTT+GGG 0.325662 6:+1048730 MsG0680030356.01.T01:three_prime_UTR
GAAGATATTGTTGAGTTTGC+AGG 0.333603 6:-1047425 None:intergenic
AGATGGTGGCTGGCGGAGAT+TGG 0.345438 6:-1047859 None:intergenic
TTCCACGTTATCTTTGATTT+GGG 0.346573 6:+1048720 MsG0680030356.01.T01:three_prime_UTR
GGATGTGGCTGCTGAGTTAA+AGG 0.364654 6:-1047654 None:intergenic
CAACATATACAGGTGCAAAC+AGG 0.369517 6:+1047246 MsG0680030356.01.T01:intron
GGAAGGTTGAGGAGGTCCGC+TGG 0.372446 6:-1047889 None:intergenic
GGTGAGTTCTGGTTTCTACT+TGG 0.372649 6:-1045570 None:intergenic
TCTGAGGAACAGTTGGGGTT+GGG 0.374059 6:-1047569 None:intergenic
AGTCGACAAAGTTGCCACTA+TGG 0.375561 6:+1048214 MsG0680030356.01.T01:CDS
GTTTATGGACAAACAGATAA+TGG 0.379393 6:+1042218 MsG0680030356.01.T01:CDS
TATTGATTTGGAAGTTGAGC+TGG 0.379878 6:-1047537 None:intergenic
TCACCATCTTGAGAGTTCTA+TGG 0.380351 6:+1045588 MsG0680030356.01.T01:CDS
GGGACCTGAGAGTATTGATT+TGG 0.381717 6:-1047549 None:intergenic
GCGAGTTACTCTTCTGGATA+TGG 0.385894 6:+1047969 MsG0680030356.01.T01:CDS
GAGGTTGAGGAGGTGCATTA+GGG 0.392897 6:-1047491 None:intergenic
GTTCACGATTCTTCTTGTTA+AGG 0.399167 6:-1042290 None:intergenic
GTCGATGAAATCGTTGTTGT+TGG 0.399316 6:-1042268 None:intergenic
TCAAAGAAATAAGAACAAAA+TGG 0.401372 6:-1048543 None:intergenic
AGATCAAGATAGTCATGAAT+TGG 0.401418 6:-1048596 None:intergenic
CCTACTGAGCCATATCGATA+TGG 0.402683 6:+1048005 MsG0680030356.01.T01:CDS
CCTGGTGCGAGTTACTCTTC+TGG 0.414200 6:+1047963 MsG0680030356.01.T01:CDS
CATAAGGTGGTTCCTCTAGA+TGG 0.414395 6:-1047815 None:intergenic
ACTCTCAAGATGGTGAGTTC+TGG 0.417745 6:-1045581 None:intergenic
TCTGCAGTAAGTGGTGGTTC+AGG 0.419285 6:+1048152 MsG0680030356.01.T01:CDS
GATGGTGGCTGGCGGAGATT+GGG 0.419902 6:-1047858 None:intergenic
GGTCCGCTGGGTGGCTGAGA+TGG 0.426894 6:-1047876 None:intergenic
TGTGGGAGTACGCGGGCAGT+AGG 0.431246 6:-1048113 None:intergenic
TATTTATGCATAATAAATGT+TGG 0.432188 6:-1048856 None:intergenic
TATCGCTTCTTTCGCGATGA+TGG 0.432759 6:+1048413 MsG0680030356.01.T01:three_prime_UTR
TATGGCGGACCACCTCAATA+TGG 0.437524 6:+1048023 MsG0680030356.01.T01:CDS
GAGTTCTATGGATGATTTGA+AGG 0.438756 6:+1045600 MsG0680030356.01.T01:CDS
TGGGTGGCTGAGATGGTGGC+TGG 0.440005 6:-1047869 None:intergenic
GGAATTTCCTGAGATTGAAC+AGG 0.441932 6:-1047612 None:intergenic
AATTTGCATCATGTTCTAGA+AGG 0.442921 6:+1045529 MsG0680030356.01.T01:CDS
CTCTGAGGAACAGTTGGGGT+TGG 0.445981 6:-1047570 None:intergenic
GCTTTGAAGGTTTATGAGGA+AGG 0.455373 6:+1048466 MsG0680030356.01.T01:three_prime_UTR
GTGAGTTCTGGTTTCTACTT+GGG 0.461793 6:-1045569 None:intergenic
TGGGTAACCGTTTCCACCAC+TGG 0.462468 6:-1048084 None:intergenic
GATCTCTCTGAGGAACAGTT+GGG 0.462714 6:-1047575 None:intergenic
GGTGCCCCTGGTTGAGGATG+TGG 0.464633 6:-1047669 None:intergenic
CTGGAAGCCGCCGAAGCGTT+AGG 0.465415 6:-1048065 None:intergenic
CTGGATATGGTACATTATCT+GGG 0.467302 6:+1047982 MsG0680030356.01.T01:CDS
ACCTCAACTGCAATCTTCCA+TGG 0.469026 6:+1047788 MsG0680030356.01.T01:CDS
ACAGATGAAGTTTGCTGCAC+AGG 0.469179 6:-1047387 None:intergenic
TTTCGCGATGATGGTTTATG+AGG 0.469401 6:+1048422 MsG0680030356.01.T01:three_prime_UTR
CCATCTTGAGGTTGGTATTG+TGG 0.474274 6:+1048758 MsG0680030356.01.T01:three_prime_UTR
TTGTCGACTATATCATCAAC+AGG 0.475344 6:-1048200 None:intergenic
TGCGGAGGTGCCCCTGGTTG+AGG 0.476318 6:-1047675 None:intergenic
GCGATGATGGTTTATGAGGA+AGG 0.476649 6:+1048426 MsG0680030356.01.T01:three_prime_UTR
AGGTTGAGGAGGTGCATTAG+GGG 0.476796 6:-1047490 None:intergenic
TCGAACAATGAAGAAACATA+TGG 0.477114 6:+1045504 MsG0680030356.01.T01:CDS
GGTGGTCCGCCATATCGATA+TGG 0.479221 6:-1048014 None:intergenic
ATGCATAATAAATGTTGGTA+AGG 0.479684 6:-1048851 None:intergenic
TCAAGCAAAAGCAGATGTAA+TGG 0.480116 6:+1048791 MsG0680030356.01.T01:three_prime_UTR
AAGATATTGTTGAGTTTGCA+GGG 0.482811 6:-1047424 None:intergenic
CAGCAACAGAGAGGTTGGTT+TGG 0.486990 6:+1048350 MsG0680030356.01.T01:CDS
GGATCTCTCTGAGGAACAGT+TGG 0.488207 6:-1047576 None:intergenic
GTCACAACTACCTAACGCTT+CGG 0.489064 6:+1048055 MsG0680030356.01.T01:CDS
GTATCTGTTGGAAATAATCA+TGG 0.490366 6:+1045622 MsG0680030356.01.T01:CDS
GGTTCAGGTTCTCCTGGAGC+TGG 0.491108 6:+1048167 MsG0680030356.01.T01:CDS
GTTTCCCTCACATGATCTCT+AGG 0.493026 6:-1048242 None:intergenic
AACGATGAAGAAGAATGATC+AGG 0.494414 6:-1042432 None:intergenic
GCCACCACCTGTTCAATCTC+AGG 0.494644 6:+1047605 MsG0680030356.01.T01:CDS
AGTGGTGGTTCAGGTTCTCC+TGG 0.495836 6:+1048161 MsG0680030356.01.T01:CDS
ATGCAGTAGGTATTGCTTGT+GGG 0.496173 6:-1048130 None:intergenic
TTGGATTAGAAGGTGTAAGA+AGG 0.496894 6:+1042045 None:intergenic
GAGGTGGCAAACTTTGTTGA+GGG 0.499915 6:-1047515 None:intergenic
TCCTGAGATTGAACAGGTGG+TGG 0.500615 6:-1047606 None:intergenic
TGTTGATGCGGAGGTGCCCC+TGG 0.501541 6:-1047681 None:intergenic
CCATATCGATATGGCTCAGT+AGG 0.503012 6:-1048005 None:intergenic
TAAGTCTGAGAAGGAACATA+AGG 0.503459 6:-1047831 None:intergenic
AATGCAAGCTCAGCTACAAC+TGG 0.504070 6:+1047299 MsG0680030356.01.T01:CDS
GGTTGAGGAGGTGCATTAGG+GGG 0.504519 6:-1047489 None:intergenic
CAACAGCCACCGCATTCATC+CGG 0.505529 6:+1047759 MsG0680030356.01.T01:CDS
CTTTGAAGGTTTATGAGGAA+GGG 0.506268 6:+1048467 MsG0680030356.01.T01:three_prime_UTR
TCTGTTAACAGTTAGTTATG+TGG 0.509355 6:-1048684 None:intergenic
AATAATCATGGAATCACTGA+TGG 0.511625 6:+1045634 MsG0680030356.01.T01:CDS
GATGAATGCGGTGGCTGTTG+TGG 0.514588 6:-1047756 None:intergenic
GAAGGTTGAGGAGGTCCGCT+GGG 0.515293 6:-1047888 None:intergenic
GGGTTGATCCATCTTGAGGT+TGG 0.516303 6:+1048750 MsG0680030356.01.T01:three_prime_UTR
AACGCTTCGGCGGCTTCCAG+TGG 0.517765 6:+1048068 MsG0680030356.01.T01:CDS
GCGGCTTCCAGTGGTGGAAA+CGG 0.518066 6:+1048077 MsG0680030356.01.T01:CDS
CGATGATGGTTTATGAGGAA+GGG 0.518787 6:+1048427 MsG0680030356.01.T01:three_prime_UTR
ATCATGTGAGGGAAACGGTT+CGG 0.519055 6:+1048249 MsG0680030356.01.T01:CDS
GTGGGAGTACGCGGGCAGTA+GGG 0.525756 6:-1048112 None:intergenic
TTGAAGCATCAACAGCGCTC+TGG 0.526502 6:-1045465 None:intergenic
ACTTCCAAATCAATACTCTC+AGG 0.527251 6:+1047545 MsG0680030356.01.T01:CDS
GTCGACAAAGTTGCCACTAT+GGG 0.527260 6:+1048215 MsG0680030356.01.T01:CDS
CAGCAGCCACATCCTCAACC+AGG 0.527408 6:+1047663 MsG0680030356.01.T01:CDS
CACAGGATCTGATGTGGCAC+GGG 0.529555 6:-1047370 None:intergenic
CCGCTGGGTGGCTGAGATGG+TGG 0.532280 6:-1047873 None:intergenic
CGGTGTTCCATAGAACTGTT+GGG 0.532437 6:-1047910 None:intergenic
GCTTCGGCGGCTTCCAGTGG+TGG 0.534650 6:+1048071 MsG0680030356.01.T01:CDS
AACAGGGGTGCATGATATCA+AGG 0.535028 6:+1047263 MsG0680030356.01.T01:CDS
TGATGGGAAATTGAGGCTGT+TGG 0.535199 6:+1045651 MsG0680030356.01.T01:CDS
GTTGGAGAATATTCTTTCTG+AGG 0.538216 6:+1045669 MsG0680030356.01.T01:CDS
ATTTGGGTTGATCCATCTTG+AGG 0.539232 6:+1048746 MsG0680030356.01.T01:three_prime_UTR
GTTCGGAAGCTGACAGAGAA+TGG 0.539452 6:+1048266 MsG0680030356.01.T01:CDS
ATATGCAGCAACAGAGAGGT+TGG 0.542821 6:+1048345 MsG0680030356.01.T01:CDS
ATGATCAGGAAGTGAACGAA+TGG 0.543991 6:-1042418 None:intergenic
CCCATGGAAGATTGCAGTTG+AGG 0.546082 6:-1047789 None:intergenic
GAAACCACGGGGATTGATTG+TGG 0.547752 6:-1047465 None:intergenic
GATGATTTGAAGGTATCTGT+TGG 0.550649 6:+1045610 MsG0680030356.01.T01:CDS
TTCTCCTGGAGCTGGTAACA+GGG 0.552561 6:+1048175 MsG0680030356.01.T01:CDS
GGCTGTTGTGGAGGTAGATG+AGG 0.553096 6:-1047744 None:intergenic
AACAGAGAGGTTGGTTTGGT+AGG 0.553859 6:+1048354 MsG0680030356.01.T01:CDS
AACATATACAGGTGCAAACA+GGG 0.554029 6:+1047247 MsG0680030356.01.T01:intron
ATGGAAGATTGCAGTTGAGG+TGG 0.554693 6:-1047786 None:intergenic
GGAACCCTGTTACCAGCTCC+AGG 0.557039 6:-1048179 None:intergenic
GACTGTTTACTACCATATTG+AGG 0.557194 6:-1048035 None:intergenic
CCACAATACCAACCTCAAGA+TGG 0.558214 6:-1048758 None:intergenic
CGCGGGCAGTAGGGAGCTGT+GGG 0.561381 6:-1048103 None:intergenic
TAGAGATCATGTGAGGGAAA+CGG 0.562181 6:+1048244 MsG0680030356.01.T01:CDS
GTGGCTGAGATGGTGGCTGG+CGG 0.563635 6:-1047866 None:intergenic
CCTACTGCATCTGCAGTAAG+TGG 0.565690 6:+1048143 MsG0680030356.01.T01:CDS
TTGGGAGGATAAGTCTGAGA+AGG 0.566348 6:-1047840 None:intergenic
GCGGTGTTCCATAGAACTGT+TGG 0.568740 6:-1047911 None:intergenic
ACGCGGGCAGTAGGGAGCTG+TGG 0.569642 6:-1048104 None:intergenic
GGTGGCTGGCGGAGATTGGG+AGG 0.569643 6:-1047855 None:intergenic
TTTGAAGGTTTATGAGGAAG+GGG 0.571670 6:+1048468 MsG0680030356.01.T01:three_prime_UTR
GCACAGGATCTGATGTGGCA+CGG 0.579401 6:-1047371 None:intergenic
GTATTGCTTGTGGGAGTACG+CGG 0.579602 6:-1048121 None:intergenic
GATGATGGTTTATGAGGAAG+GGG 0.579806 6:+1048428 MsG0680030356.01.T01:three_prime_UTR
TAGAACTGTTGGGAAGGTTG+AGG 0.579906 6:-1047900 None:intergenic
GGAGGTGGCAAACTTTGTTG+AGG 0.579955 6:-1047516 None:intergenic
ATGGGTTGAAAATCGTAGCT+AGG 0.582541 6:-1042399 None:intergenic
CAGATAATGGATCTAAGCCA+TGG 0.583832 6:+1042231 MsG0680030356.01.T01:CDS
CCTCAACTGCAATCTTCCAT+GGG 0.585108 6:+1047789 MsG0680030356.01.T01:CDS
CCAGAAGAGTAACTCGCACC+AGG 0.585361 6:-1047963 None:intergenic
CTGGATAAGCTTATGAATGA+AGG 0.585757 6:+1048314 MsG0680030356.01.T01:CDS
AGCAGCCACATCCTCAACCA+GGG 0.586197 6:+1047664 MsG0680030356.01.T01:CDS
ATCTCTAGGGAATCCCATAG+TGG 0.587762 6:-1048228 None:intergenic
AGTTGACCTAAATACAGTGC+TGG 0.587959 6:+1048295 MsG0680030356.01.T01:CDS
TGATTTGGAAGTTGAGCTGG+AGG 0.590060 6:-1047534 None:intergenic
TGATCAGGAAGTGAACGAAT+GGG 0.594320 6:-1042417 None:intergenic
CATCCATAGAACTCTCAAGA+TGG 0.597918 6:-1045591 None:intergenic
AACTGTTGGGAAGGTTGAGG+AGG 0.598242 6:-1047897 None:intergenic
ATAATCATGGAATCACTGAT+GGG 0.603214 6:+1045635 MsG0680030356.01.T01:CDS
TTTGGAAGTTGAGCTGGAGG+TGG 0.603503 6:-1047531 None:intergenic
GGCTGAGAGTATTGATGATG+AGG 0.603851 6:-1047717 None:intergenic
GGTGGCAAACTTTGTTGAGG+GGG 0.604162 6:-1047513 None:intergenic
GGTTGAGGAGGTCCGCTGGG+TGG 0.604968 6:-1047885 None:intergenic
TGTGGAAGATTATAAGACGA+AGG 0.605650 6:-1047447 None:intergenic
TGCTGATATTGTTGATGCGG+AGG 0.607900 6:-1047690 None:intergenic
TTATGTTTGTGCTTAAAACG+TGG 0.608517 6:-1042132 None:intergenic
TTCCTCTAGATGGTGACCCA+TGG 0.609804 6:-1047805 None:intergenic
GATGCAGTAGGTATTGCTTG+TGG 0.612043 6:-1048131 None:intergenic
TTCTAGAAGGTGTTAGTGCG+CGG 0.613505 6:+1045542 MsG0680030356.01.T01:CDS
TTTCCCTCACATGATCTCTA+GGG 0.616191 6:-1048241 None:intergenic
TTCCATGGGTCACCATCTAG+AGG 0.616790 6:+1047803 MsG0680030356.01.T01:CDS
CCACTTACTGCAGATGCAGT+AGG 0.618868 6:-1048143 None:intergenic
GTCTGCTGATATTGTTGATG+CGG 0.620702 6:-1047693 None:intergenic
TTCTATGGAACACCGCCACA+AGG 0.620721 6:+1047918 MsG0680030356.01.T01:CDS
AAGCTTATGAATGAAGGTGG+TGG 0.622241 6:+1048320 MsG0680030356.01.T01:CDS
TTGAAGGTTTATGAGGAAGG+GGG 0.623366 6:+1048469 MsG0680030356.01.T01:three_prime_UTR
GAACCACCATCGAGTAGACC+TGG 0.628427 6:+1047945 MsG0680030356.01.T01:CDS
GAATCACTGATGGGAAATTG+AGG 0.629747 6:+1045644 MsG0680030356.01.T01:CDS
GAATGCGGTGGCTGTTGTGG+AGG 0.630061 6:-1047753 None:intergenic
GCTGCTGAGTTAAAGGCAGT+TGG 0.630771 6:-1047647 None:intergenic
GTTCCATAGAACTGTTGGGA+AGG 0.631446 6:-1047906 None:intergenic
GCTGAGAGTATTGATGATGA+GGG 0.632355 6:-1047716 None:intergenic
GTCTGAGAAGGAACATAAGG+TGG 0.637200 6:-1047828 None:intergenic
ATCTCTCTGAGGAACAGTTG+GGG 0.642126 6:-1047574 None:intergenic
CTCGCACCAGGTCTACTCGA+TGG 0.643974 6:-1047951 None:intergenic
TAAACCTTCAAAGCAAAACA+AGG 0.644842 6:-1048457 None:intergenic
TGGAAGATGATGATCCTCCA+TGG 0.644949 6:-1042248 None:intergenic
GTAGCTAGGAACAATATCAT+CGG 0.645739 6:-1042385 None:intergenic
GCAGCCACATCCTCAACCAG+GGG 0.647975 6:+1047665 MsG0680030356.01.T01:CDS
TGTGGAGGTAGATGAGGCGG+TGG 0.648997 6:-1047738 None:intergenic
AACCCAAATCAAAGATAACG+TGG 0.656028 6:-1048722 None:intergenic
GAATTGGAATCAGAATTCCA+AGG 0.657124 6:-1042462 None:intergenic
ACTGCATCTGCAGTAAGTGG+TGG 0.658963 6:+1048146 MsG0680030356.01.T01:CDS
AGGTGGCAAACTTTGTTGAG+GGG 0.660893 6:-1047514 None:intergenic
TGTTGTGGAGGTAGATGAGG+CGG 0.661173 6:-1047741 None:intergenic
AGATATTGTTGAGTTTGCAG+GGG 0.662805 6:-1047423 None:intergenic
ATTTCCTGAGATTGAACAGG+TGG 0.665381 6:-1047609 None:intergenic
GATGGTGGTTCATATCCTTG+TGG 0.666986 6:-1047933 None:intergenic
TATTGCTTGTGGGAGTACGC+GGG 0.670170 6:-1048120 None:intergenic
GATTCCCTAGAGATCATGTG+AGG 0.674405 6:+1048237 MsG0680030356.01.T01:CDS
TGTTTACTACCATATTGAGG+TGG 0.680049 6:-1048032 None:intergenic
GCACCAGGTCTACTCGATGG+TGG 0.681299 6:-1047948 None:intergenic
CCACCATCTCAGCCACCCAG+CGG 0.689523 6:+1047873 MsG0680030356.01.T01:CDS
ATTCCCTAGAGATCATGTGA+GGG 0.691841 6:+1048238 MsG0680030356.01.T01:CDS
GGTGGATTTCCGGATGAATG+CGG 0.691921 6:-1047768 None:intergenic
GATAAGCTTATGAATGAAGG+TGG 0.692443 6:+1048317 MsG0680030356.01.T01:CDS
ACAACTACCTAACGCTTCGG+CGG 0.699351 6:+1048058 MsG0680030356.01.T01:CDS
ACTGAGCCATATCGATATGG+CGG 0.701260 6:+1048008 MsG0680030356.01.T01:CDS
GGCAAGTATGGATCTCTCTG+AGG 0.701957 6:-1047585 None:intergenic
GGATTTCCGGATGAATGCGG+TGG 0.703500 6:-1047765 None:intergenic
GGTGGTTCATATCCTTGTGG+CGG 0.711124 6:-1047930 None:intergenic
TTGCTGCACAGGATCTGATG+TGG 0.720740 6:-1047376 None:intergenic
ATGATGGTTTATGAGGAAGG+GGG 0.721364 6:+1048429 MsG0680030356.01.T01:three_prime_UTR
CTGAGAGTATTGATGATGAG+GGG 0.722939 6:-1047715 None:intergenic
TCTTCCACAATCAATCCCCG+TGG 0.724568 6:+1047461 MsG0680030356.01.T01:CDS
ACATATACAGGTGCAAACAG+GGG 0.731424 6:+1047248 MsG0680030356.01.T01:intron
GGTGATATGCAGCAACAGAG+AGG 0.768274 6:+1048341 MsG0680030356.01.T01:CDS
ATAATGGATCTAAGCCATGG+AGG 0.784217 6:+1042234 MsG0680030356.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATAAATTTATATACTTA+GGG - Chr6:1043245-1043264 None:intergenic 10.0%
!! TCTTATAAATTTATATACTT+AGG - Chr6:1043246-1043265 None:intergenic 10.0%
!!! TATTTTTCAATAAATAAAAG+TGG + Chr6:1048628-1048647 MsG0680030356.01.T01:three_prime_UTR 10.0%
!!! TTATTTTAAATTTCTTTAAC+GGG + Chr6:1046790-1046809 MsG0680030356.01.T01:intron 10.0%
!! AACTTTGCATAATATTAAAA+AGG - Chr6:1045031-1045050 None:intergenic 15.0%
!! AAGGTTGTATATATAATTAT+GGG + Chr6:1046218-1046237 MsG0680030356.01.T01:intron 15.0%
!! AATAACTATAATCGAAATTA+GGG - Chr6:1042512-1042531 None:intergenic 15.0%
!! TAATAACTATAATCGAAATT+AGG - Chr6:1042513-1042532 None:intergenic 15.0%
!! TATTTATGCATAATAAATGT+TGG - Chr6:1048859-1048878 None:intergenic 15.0%
!! TTATCTTAGTTATTTGTTTA+TGG + Chr6:1045166-1045185 MsG0680030356.01.T01:intron 15.0%
!!! AATGTTTTGTTGTATTTAAA+AGG + Chr6:1044023-1044042 MsG0680030356.01.T01:intron 15.0%
!!! ATAAATTTTTTAAGTTACCA+AGG - Chr6:1044939-1044958 None:intergenic 15.0%
!!! TAGTTTAACCTTAAAATTTT+CGG + Chr6:1045873-1045892 MsG0680030356.01.T01:intron 15.0%
!!! TATTATTTATAAGCTTGTTA+AGG + Chr6:1042913-1042932 MsG0680030356.01.T01:intron 15.0%
!!! TATTTTAAATTTCTTTAACG+GGG + Chr6:1046791-1046810 MsG0680030356.01.T01:intron 15.0%
!!! TTTTGAGAAAGATTATTTTT+TGG - Chr6:1044636-1044655 None:intergenic 15.0%
!! AAAACAAATTATTTGGATGA+TGG + Chr6:1047040-1047059 MsG0680030356.01.T01:intron 20.0%
!! AAACAAATTATTTGGATGAT+GGG + Chr6:1047041-1047060 MsG0680030356.01.T01:intron 20.0%
!! AATATTGAAAATTGTGAATG+TGG + Chr6:1046674-1046693 MsG0680030356.01.T01:intron 20.0%
!! AATTTGTGTGATTGAAAATT+AGG + Chr6:1042572-1042591 MsG0680030356.01.T01:intron 20.0%
!! ACAAAGGAAAACAAATTATT+TGG + Chr6:1047033-1047052 MsG0680030356.01.T01:intron 20.0%
!! AGAAATTAATGTTAGAAGTT+GGG - Chr6:1045722-1045741 None:intergenic 20.0%
!! AGAACAAAATGGTAAAAAAA+CGG - Chr6:1048535-1048554 None:intergenic 20.0%
!! CAAGGTTGTATATATAATTA+TGG + Chr6:1046217-1046236 MsG0680030356.01.T01:intron 20.0%
!! TATTATGTTTGTCATTAGTT+GGG + Chr6:1046098-1046117 MsG0680030356.01.T01:intron 20.0%
!! TCAAAGAAATAAGAACAAAA+TGG - Chr6:1048546-1048565 None:intergenic 20.0%
!! TGAACTAAAATTAAAGCTTT+AGG + Chr6:1045951-1045970 MsG0680030356.01.T01:intron 20.0%
!! TTAGCCTATAATTATATAGT+TGG + Chr6:1046487-1046506 MsG0680030356.01.T01:intron 20.0%
!! TTAGTCATATACTTAACTTA+AGG + Chr6:1044313-1044332 MsG0680030356.01.T01:intron 20.0%
!! TTATTATGTTTGTCATTAGT+TGG + Chr6:1046097-1046116 MsG0680030356.01.T01:intron 20.0%
!! TTCTATTGTAAATCATAATG+AGG + Chr6:1043436-1043455 MsG0680030356.01.T01:intron 20.0%
!! TTGAAATTGATTGTATAAAG+TGG + Chr6:1043680-1043699 MsG0680030356.01.T01:intron 20.0%
!!! AAATTAAAGCTTTAGGTATT+AGG + Chr6:1045958-1045977 MsG0680030356.01.T01:intron 20.0%
!!! ATTATTGTTTTCATCATGAA+AGG + Chr6:1046718-1046737 MsG0680030356.01.T01:intron 20.0%
!!! ATTTTAGTTCATTTTTAGCA+TGG - Chr6:1045942-1045961 None:intergenic 20.0%
!!! CTTTTTGTTGATTCAAATAT+TGG + Chr6:1045770-1045789 MsG0680030356.01.T01:intron 20.0%
!!! GAGTTTCTCAATTTTTTTTT+TGG - Chr6:1043527-1043546 None:intergenic 20.0%
!!! TAAATATAGCAATTTTGCAT+TGG + Chr6:1046281-1046300 MsG0680030356.01.T01:intron 20.0%
!!! TAATTTGAAGTTTATAGCTT+AGG + Chr6:1042729-1042748 MsG0680030356.01.T01:intron 20.0%
!!! TATAATTTTGCCTTTTATTC+AGG + Chr6:1048825-1048844 MsG0680030356.01.T01:three_prime_UTR 20.0%
!!! TCAATAAATAAAAGTGGATT+TGG + Chr6:1048634-1048653 MsG0680030356.01.T01:three_prime_UTR 20.0%
!!! TTTAATGCTTCTGAAAATAT+AGG + Chr6:1044055-1044074 MsG0680030356.01.T01:intron 20.0%
!!! TTTGATTTGATTACTATGTA+AGG + Chr6:1042686-1042705 MsG0680030356.01.T01:intron 20.0%
! AAAAAAAATTGAGAAACTCG+TGG + Chr6:1043528-1043547 MsG0680030356.01.T01:intron 25.0%
! AACCTAAGAAAAAGTAACAA+AGG + Chr6:1046908-1046927 MsG0680030356.01.T01:intron 25.0%
! AATCTATACAACAATGGTTA+AGG + Chr6:1044779-1044798 MsG0680030356.01.T01:intron 25.0%
! AGTATATGACTAATTATGAG+TGG - Chr6:1044306-1044325 None:intergenic 25.0%
! ATACTACTATACTAGATTAG+TGG + Chr6:1046017-1046036 MsG0680030356.01.T01:intron 25.0%
! ATATAGGTCTTACTTATGTA+AGG + Chr6:1044071-1044090 MsG0680030356.01.T01:intron 25.0%
! ATGCATAATAAATGTTGGTA+AGG - Chr6:1048854-1048873 None:intergenic 25.0%
! ATGTCAAACAAAAGAGTAAA+AGG - Chr6:1047225-1047244 None:intergenic 25.0%
! ATTATGTTTGTCATTAGTTG+GGG + Chr6:1046099-1046118 MsG0680030356.01.T01:intron 25.0%
! ATTGTAAATCATAATGAGGT+TGG + Chr6:1043440-1043459 MsG0680030356.01.T01:intron 25.0%
! CAACTTCTAACATTAATTTC+TGG + Chr6:1045721-1045740 MsG0680030356.01.T01:intron 25.0%
! CACTCCAACTATATAATTAT+AGG - Chr6:1046494-1046513 None:intergenic 25.0%
! CAGAAATTAATGTTAGAAGT+TGG - Chr6:1045723-1045742 None:intergenic 25.0%
! CCATTAATTGAGTAGTTTAA+AGG + Chr6:1043575-1043594 MsG0680030356.01.T01:intron 25.0%
! CCTTTAAACTACTCAATTAA+TGG - Chr6:1043578-1043597 None:intergenic 25.0%
! CTTTCAATGATACAAAGTAA+AGG + Chr6:1044428-1044447 MsG0680030356.01.T01:intron 25.0%
! GAAATTAATGTTAGAAGTTG+GGG - Chr6:1045721-1045740 None:intergenic 25.0%
! TAAAGTAGTGAGAATTACTT+TGG - Chr6:1042487-1042506 None:intergenic 25.0%
! TATAGGTCTTACTTATGTAA+GGG + Chr6:1044072-1044091 MsG0680030356.01.T01:intron 25.0%
! TCCTTAATTCATCACAAAAA+TGG + Chr6:1042348-1042367 MsG0680030356.01.T01:CDS 25.0%
! TGAAAACAATAATGTAAGAG+TGG - Chr6:1046711-1046730 None:intergenic 25.0%
! TGAGATTATCTACTAAGTAT+GGG - Chr6:1043202-1043221 None:intergenic 25.0%
! TTAATTCATCACAAAAATGG+CGG + Chr6:1042351-1042370 MsG0680030356.01.T01:CDS 25.0%
! TTGAATAAGTGCATAGTAAA+AGG + Chr6:1045049-1045068 MsG0680030356.01.T01:intron 25.0%
! TTGAGATTATCTACTAAGTA+TGG - Chr6:1043203-1043222 None:intergenic 25.0%
!! AAACTGTAATGTTTTCTTGT+GGG + Chr6:1048572-1048591 MsG0680030356.01.T01:three_prime_UTR 25.0%
!! AATTACAACATTTTGTACCT+TGG + Chr6:1044919-1044938 MsG0680030356.01.T01:intron 25.0%
!! ACTTTGATGTTGTCATTTAT+AGG - Chr6:1044244-1044263 None:intergenic 25.0%
!! TTTGTCTTGTTGTGAAAATT+AGG + Chr6:1042616-1042635 MsG0680030356.01.T01:intron 25.0%
!!! AATGAAAAGTGTCTGTTAAA+AGG + Chr6:1044115-1044134 MsG0680030356.01.T01:intron 25.0%
!!! ACATTATTTTTGCTTTGCTT+TGG + Chr6:1045239-1045258 MsG0680030356.01.T01:intron 25.0%
!!! AGAAAGATTATTTTTTGGTC+GGG - Chr6:1044631-1044650 None:intergenic 25.0%
!!! ATTATTTTTGCTTTGCTTTG+GGG + Chr6:1045241-1045260 MsG0680030356.01.T01:intron 25.0%
!!! ATTTTGAGAGTTTAGATGAA+TGG + Chr6:1042649-1042668 MsG0680030356.01.T01:intron 25.0%
!!! CATTATTTTTGCTTTGCTTT+GGG + Chr6:1045240-1045259 MsG0680030356.01.T01:intron 25.0%
!!! GAGAAAGATTATTTTTTGGT+CGG - Chr6:1044632-1044651 None:intergenic 25.0%
!!! GTCGATGAATTTTTAGAATA+GGG - Chr6:1043505-1043524 None:intergenic 25.0%
!!! TCGATGAATTTTTAGAATAG+GGG - Chr6:1043504-1043523 None:intergenic 25.0%
!!! TGTTTTTGTATAAGCTATCT+TGG + Chr6:1043119-1043138 MsG0680030356.01.T01:intron 25.0%
!!! TTGTTTTGATAAATTAAGCC+TGG - Chr6:1045824-1045843 None:intergenic 25.0%
AAAAGGTTCAAACTACGAAT+AGG + Chr6:1044491-1044510 MsG0680030356.01.T01:intron 30.0%
AAAATAAGCTCAATCCAAAC+AGG + Chr6:1043040-1043059 MsG0680030356.01.T01:intron 30.0%
AAAGATAAGTTTGTGAGATC+TGG + Chr6:1045087-1045106 MsG0680030356.01.T01:intron 30.0%
AAAGGTTCAAACTACGAATA+GGG + Chr6:1044492-1044511 MsG0680030356.01.T01:intron 30.0%
AACACAGTATTGTCAAATAG+CGG + Chr6:1043825-1043844 MsG0680030356.01.T01:intron 30.0%
AAGATATTGTTGAGTTTGCA+GGG - Chr6:1047427-1047446 None:intergenic 30.0%
AATAATATATCGCACCATCT+TGG + Chr6:1045337-1045356 MsG0680030356.01.T01:intron 30.0%
AATAATCATGGAATCACTGA+TGG + Chr6:1045634-1045653 MsG0680030356.01.T01:CDS 30.0%
ACTACCGTTTATTCTTATTC+TGG + Chr6:1047195-1047214 MsG0680030356.01.T01:intron 30.0%
AGATCAAGATAGTCATGAAT+TGG - Chr6:1048599-1048618 None:intergenic 30.0%
AGGACCAGAATAAGAATAAA+CGG - Chr6:1047202-1047221 None:intergenic 30.0%
AGTTTACACATAAGCACTAA+GGG - Chr6:1043066-1043085 None:intergenic 30.0%
ATAATCATGGAATCACTGAT+GGG + Chr6:1045635-1045654 MsG0680030356.01.T01:CDS 30.0%
ATGAATGAAGAAAACGACAA+AGG + Chr6:1047017-1047036 MsG0680030356.01.T01:intron 30.0%
ATGTATGTATCAGACTAATC+TGG + Chr6:1045276-1045295 MsG0680030356.01.T01:intron 30.0%
ATTGAAAATTGTGAATGTGG+TGG + Chr6:1046677-1046696 MsG0680030356.01.T01:intron 30.0%
CATATGCATAAAGTTCTCTA+TGG - Chr6:1047067-1047086 None:intergenic 30.0%
CTAACTGTTAACAGATTTGA+TGG + Chr6:1048692-1048711 MsG0680030356.01.T01:three_prime_UTR 30.0%
GATTGCAATCTATACAACAA+TGG + Chr6:1044773-1044792 MsG0680030356.01.T01:intron 30.0%
GTAGCAAGATAGTAAAACAT+TGG + Chr6:1044197-1044216 MsG0680030356.01.T01:intron 30.0%
GTATCTGTTGGAAATAATCA+TGG + Chr6:1045622-1045641 MsG0680030356.01.T01:CDS 30.0%
GTTTATGGACAAACAGATAA+TGG + Chr6:1042218-1042237 MsG0680030356.01.T01:CDS 30.0%
GTTTGACATACAACATATAC+AGG + Chr6:1047236-1047255 MsG0680030356.01.T01:intron 30.0%
TAAACCTTCAAAGCAAAACA+AGG - Chr6:1048460-1048479 None:intergenic 30.0%
TAGTTTACACATAAGCACTA+AGG - Chr6:1043067-1043086 None:intergenic 30.0%
TATTTAATCGTCAGCCAAAA+AGG + Chr6:1046937-1046956 MsG0680030356.01.T01:intron 30.0%
TCAAACAAAAGAGTAAAAGG+AGG - Chr6:1047222-1047241 None:intergenic 30.0%
TCATAATATCATAACCTGTG+AGG - Chr6:1046577-1046596 None:intergenic 30.0%
TCGAACAATGAAGAAACATA+TGG + Chr6:1045504-1045523 MsG0680030356.01.T01:CDS 30.0%
TCTATCGTTTACAACTCATA+TGG + Chr6:1046621-1046640 MsG0680030356.01.T01:intron 30.0%
TCTGTTAACAGTTAGTTATG+TGG - Chr6:1048687-1048706 None:intergenic 30.0%
TTATGTTTGTGCTTAAAACG+TGG - Chr6:1042135-1042154 None:intergenic 30.0%
TTGTTCTTAGGATAATGCTA+GGG + Chr6:1043960-1043979 MsG0680030356.01.T01:intron 30.0%
TTTCCACGTTATCTTTGATT+TGG + Chr6:1048719-1048738 MsG0680030356.01.T01:three_prime_UTR 30.0%
! AAGTTTCAGCATTGAATGTT+AGG + Chr6:1045110-1045129 MsG0680030356.01.T01:intron 30.0%
! AATTTGCATCATGTTCTAGA+AGG + Chr6:1045529-1045548 MsG0680030356.01.T01:CDS 30.0%
! ACTGCAAACCGAAAATTTTA+AGG - Chr6:1045884-1045903 None:intergenic 30.0%
! AGTTCTAACATTGTCAAGAT+CGG + Chr6:1044140-1044159 MsG0680030356.01.T01:intron 30.0%
! GAAACTGTAATGTTTTCTTG+TGG + Chr6:1048571-1048590 MsG0680030356.01.T01:three_prime_UTR 30.0%
! GTTGTTGTTGTATAGCATTA+GGG + Chr6:1042824-1042843 MsG0680030356.01.T01:intron 30.0%
! TAGAGGTAGTATTTCTTTTG+TGG - Chr6:1044373-1044392 None:intergenic 30.0%
! TTCCACGTTATCTTTGATTT+GGG + Chr6:1048720-1048739 MsG0680030356.01.T01:three_prime_UTR 30.0%
! TTGACATAACTTTTGCACTA+TGG + Chr6:1046138-1046157 MsG0680030356.01.T01:intron 30.0%
! TTGTCGAATAGTTGATATAG+TGG + Chr6:1043745-1043764 MsG0680030356.01.T01:intron 30.0%
!! AAAATTTTCGGTTTGCAGTT+TGG + Chr6:1045885-1045904 MsG0680030356.01.T01:intron 30.0%
!! AAATTTTCGGTTTGCAGTTT+GGG + Chr6:1045886-1045905 MsG0680030356.01.T01:intron 30.0%
!! ACACATTCCATTGTTTTGTA+AGG + Chr6:1046961-1046980 MsG0680030356.01.T01:intron 30.0%
!! ACATAAGTTTTGTGACTGTT+TGG - Chr6:1043173-1043192 None:intergenic 30.0%
!! AGTGAGAATTACTTTGGAAT+TGG - Chr6:1042481-1042500 None:intergenic 30.0%
!! ATCTTTGATTTGGGTTGATT+TGG + Chr6:1048729-1048748 MsG0680030356.01.T01:three_prime_UTR 30.0%
!! CATAAGTTTTGTGACTGTTT+GGG - Chr6:1043172-1043191 None:intergenic 30.0%
!! CATTAATTTCTGGCAACATT+TGG + Chr6:1045731-1045750 MsG0680030356.01.T01:intron 30.0%
!! GGAAAAGCATTGTAAAAGAA+AGG - Chr6:1046541-1046560 None:intergenic 30.0%
!! GTCGTTTTCTTCATTCATTT+AGG - Chr6:1047015-1047034 None:intergenic 30.0%
!! GTGTTTTTACATGCTACTAT+TGG + Chr6:1047126-1047145 MsG0680030356.01.T01:intron 30.0%
!! TCTTTGATTTGGGTTGATTT+GGG + Chr6:1048730-1048749 MsG0680030356.01.T01:three_prime_UTR 30.0%
!! TTGTCACTTTAGTTAACTCT+GGG + Chr6:1046060-1046079 MsG0680030356.01.T01:intron 30.0%
!!! AGCCTTTGTTACTTTTTCTT+AGG - Chr6:1046913-1046932 None:intergenic 30.0%
!!! ATGAATTTTTAGAATAGGGG+AGG - Chr6:1043501-1043520 None:intergenic 30.0%
!!! CATGCTTTTTTGTTGTTCTT+AGG + Chr6:1043948-1043967 MsG0680030356.01.T01:intron 30.0%
!!! GCCATTTTTGTGATGAATTA+AGG - Chr6:1042352-1042371 None:intergenic 30.0%
!!! GGTCGATGAATTTTTAGAAT+AGG - Chr6:1043506-1043525 None:intergenic 30.0%
!!! TTTTGCTTTGAAGGTTTATG+AGG + Chr6:1048462-1048481 MsG0680030356.01.T01:three_prime_UTR 30.0%
AAAATTGTGAATGTGGTGGT+TGG + Chr6:1046681-1046700 MsG0680030356.01.T01:intron 35.0%
AACATATACAGGTGCAAACA+GGG + Chr6:1047247-1047266 MsG0680030356.01.T01:intron 35.0%
AACCCAAATCAAAGATAACG+TGG - Chr6:1048725-1048744 None:intergenic 35.0%
AACGATGAAGAAGAATGATC+AGG - Chr6:1042435-1042454 None:intergenic 35.0%
AACTCCGAATAAATTGTGGT+TGG + Chr6:1043330-1043349 MsG0680030356.01.T01:intron 35.0%
AAGAAAACCCTAAACCAAGA+TGG - Chr6:1045354-1045373 None:intergenic 35.0%
AAGGTCAAACAACACGATAT+AGG + Chr6:1044588-1044607 MsG0680030356.01.T01:intron 35.0%
AATGAATACGACGTCGTTTA+TGG + Chr6:1042203-1042222 MsG0680030356.01.T01:exon 35.0%
ACTTCCAAATCAATACTCTC+AGG + Chr6:1047545-1047564 MsG0680030356.01.T01:CDS 35.0%
AGATATTGTTGAGTTTGCAG+GGG - Chr6:1047426-1047445 None:intergenic 35.0%
AGGTCAAACAACACGATATA+GGG + Chr6:1044589-1044608 MsG0680030356.01.T01:intron 35.0%
AGTGCAGAGGTAATCTAAAT+TGG + Chr6:1043552-1043571 MsG0680030356.01.T01:intron 35.0%
ATTAGATGTCAGTGTCAAAC+TGG - Chr6:1043614-1043633 None:intergenic 35.0%
ATTGGTGTATAATTGCGACT+CGG + Chr6:1047144-1047163 MsG0680030356.01.T01:intron 35.0%
CATATCCCACTAAGTAAAGT+CGG - Chr6:1042799-1042818 None:intergenic 35.0%
CATGCGATTTGACTCATTAA+GGG + Chr6:1044716-1044735 MsG0680030356.01.T01:intron 35.0%
CGATTGAAGTTAGTGCTTAA+TGG + Chr6:1043913-1043932 MsG0680030356.01.T01:intron 35.0%
CTAACTTCAATCGTAAAACG+CGG - Chr6:1043906-1043925 None:intergenic 35.0%
CTGGATAAGCTTATGAATGA+AGG + Chr6:1048314-1048333 MsG0680030356.01.T01:CDS 35.0%
CTGGATATGGTACATTATCT+GGG + Chr6:1047982-1048001 MsG0680030356.01.T01:CDS 35.0%
GAAAGATGTGAACTTCTGAA+TGG + Chr6:1044514-1044533 MsG0680030356.01.T01:intron 35.0%
GAAGATATTGTTGAGTTTGC+AGG - Chr6:1047428-1047447 None:intergenic 35.0%
GAATTGGAATCAGAATTCCA+AGG - Chr6:1042465-1042484 None:intergenic 35.0%
GACTGTTTACTACCATATTG+AGG - Chr6:1048038-1048057 None:intergenic 35.0%
GAGAAACTCCGAATAAATTG+TGG + Chr6:1043326-1043345 MsG0680030356.01.T01:intron 35.0%
GAGTTCTATGGATGATTTGA+AGG + Chr6:1045600-1045619 MsG0680030356.01.T01:CDS 35.0%
GATAAGCTTATGAATGAAGG+TGG + Chr6:1048317-1048336 MsG0680030356.01.T01:CDS 35.0%
GTAAATCATAATGAGGTTGG+TGG + Chr6:1043443-1043462 MsG0680030356.01.T01:intron 35.0%
GTAGCTAGGAACAATATCAT+CGG - Chr6:1042388-1042407 None:intergenic 35.0%
GTTCACGATTCTTCTTGTTA+AGG - Chr6:1042293-1042312 None:intergenic 35.0%
GTTGGAGAATATTCTTTCTG+AGG + Chr6:1045669-1045688 MsG0680030356.01.T01:CDS 35.0%
GTTGTTCTTAGGATAATGCT+AGG + Chr6:1043959-1043978 MsG0680030356.01.T01:intron 35.0%
TAAGTCTGAGAAGGAACATA+AGG - Chr6:1047834-1047853 None:intergenic 35.0%
TATCAACTATTCGACAACAC+TGG - Chr6:1043742-1043761 None:intergenic 35.0%
TATCTTAACATGTGCCTTGA+GGG + Chr6:1046452-1046471 MsG0680030356.01.T01:intron 35.0%
TATTCTCAATGATTCTGCCT+AGG + Chr6:1044163-1044182 MsG0680030356.01.T01:intron 35.0%
TCAAAATACACTTGCAAGAG+TGG - Chr6:1043664-1043683 None:intergenic 35.0%
TCAAGCAAAAGCAGATGTAA+TGG + Chr6:1048791-1048810 MsG0680030356.01.T01:three_prime_UTR 35.0%
TCTGCCAACCACAATTTATT+CGG - Chr6:1043337-1043356 None:intergenic 35.0%
TCTGGATATGGTACATTATC+TGG + Chr6:1047981-1048000 MsG0680030356.01.T01:CDS 35.0%
TGTGGAAGATTATAAGACGA+AGG - Chr6:1047450-1047469 None:intergenic 35.0%
TGTTTACTACCATATTGAGG+TGG - Chr6:1048035-1048054 None:intergenic 35.0%
TTAGAGTTATCGTTTCTCAC+AGG - Chr6:1047093-1047112 None:intergenic 35.0%
TTATATACTTAGGGCCTCTT+TGG - Chr6:1043236-1043255 None:intergenic 35.0%
TTGAAGTTAGTGCTTAATGG+AGG + Chr6:1043916-1043935 MsG0680030356.01.T01:intron 35.0%
TTGTTTAACATGTGCCCTAA+GGG - Chr6:1046259-1046278 None:intergenic 35.0%
TTTGAAGGTTTATGAGGAAG+GGG + Chr6:1048468-1048487 MsG0680030356.01.T01:three_prime_UTR 35.0%
! CAATGGAATGTGTTCCTTTT+TGG - Chr6:1046954-1046973 None:intergenic 35.0%
! CCATAGTTCTGCACAAAATA+AGG - Chr6:1045400-1045419 None:intergenic 35.0%
! CTTATGTAAGGGCAACTTTT+AGG + Chr6:1044083-1044102 MsG0680030356.01.T01:intron 35.0%
! CTTTGAAGGTTTATGAGGAA+GGG + Chr6:1048467-1048486 MsG0680030356.01.T01:three_prime_UTR 35.0%
! GGTTGTTGTTGTATAGCATT+AGG + Chr6:1042823-1042842 MsG0680030356.01.T01:intron 35.0%
! GTATTTCTTTTGTGGACTTC+TGG - Chr6:1044365-1044384 None:intergenic 35.0%
! GTGTTGACCTTACAAAACAA+TGG - Chr6:1046971-1046990 None:intergenic 35.0%
! TTGTCGACTATATCATCAAC+AGG - Chr6:1048203-1048222 None:intergenic 35.0%
!! GATGATTTGAAGGTATCTGT+TGG + Chr6:1045610-1045629 MsG0680030356.01.T01:CDS 35.0%
!! GTTGTCACTTTAGTTAACTC+TGG + Chr6:1046059-1046078 MsG0680030356.01.T01:intron 35.0%
!! TATTGATTTGGAAGTTGAGC+TGG - Chr6:1047540-1047559 None:intergenic 35.0%
!! TGTCACTTTAGTTAACTCTG+GGG + Chr6:1046061-1046080 MsG0680030356.01.T01:intron 35.0%
!!! CCTTATTTTGTGCAGAACTA+TGG + Chr6:1045397-1045416 MsG0680030356.01.T01:intron 35.0%
!!! CTATCCTTGTTTTGCTTTGA+AGG + Chr6:1048453-1048472 MsG0680030356.01.T01:three_prime_UTR 35.0%
AAGCTTATGAATGAAGGTGG+TGG + Chr6:1048320-1048339 MsG0680030356.01.T01:CDS 40.0%
AAGTTAGTGCTTAATGGAGG+AGG + Chr6:1043919-1043938 MsG0680030356.01.T01:intron 40.0%
AATACACTTGCAAGAGTGGA+AGG - Chr6:1043660-1043679 None:intergenic 40.0%
ACAGAAGACATGAACAGAGA+GGG + Chr6:1044455-1044474 MsG0680030356.01.T01:intron 40.0%
ACATATACAGGTGCAAACAG+GGG + Chr6:1047248-1047267 MsG0680030356.01.T01:intron 40.0%
AGAGATGAAAATTTCGAGGC+AGG + Chr6:1044548-1044567 MsG0680030356.01.T01:intron 40.0%
AGTTGACCTAAATACAGTGC+TGG + Chr6:1048295-1048314 MsG0680030356.01.T01:CDS 40.0%
ATACAACCTTGATATCCCCT+AGG - Chr6:1046208-1046227 None:intergenic 40.0%
ATATCGCACCATCTTGGTTT+AGG + Chr6:1045343-1045362 MsG0680030356.01.T01:intron 40.0%
ATGAGTGGTTTCAGATGCTA+TGG - Chr6:1044291-1044310 None:intergenic 40.0%
ATGATCAGGAAGTGAACGAA+TGG - Chr6:1042421-1042440 None:intergenic 40.0%
ATGATGGTTTATGAGGAAGG+GGG + Chr6:1048429-1048448 MsG0680030356.01.T01:three_prime_UTR 40.0%
ATTCATCACAAAAATGGCGG+TGG + Chr6:1042354-1042373 MsG0680030356.01.T01:CDS 40.0%
ATTCCCTAGAGATCATGTGA+GGG + Chr6:1048238-1048257 MsG0680030356.01.T01:CDS 40.0%
ATTTCCTGAGATTGAACAGG+TGG - Chr6:1047612-1047631 None:intergenic 40.0%
CAACATATACAGGTGCAAAC+AGG + Chr6:1047246-1047265 MsG0680030356.01.T01:intron 40.0%
CATCCATAGAACTCTCAAGA+TGG - Chr6:1045594-1045613 None:intergenic 40.0%
CGACTTTACTTAGTGGGATA+TGG + Chr6:1042797-1042816 MsG0680030356.01.T01:intron 40.0%
CGAGAGAGATGAAAATTTCG+AGG + Chr6:1044544-1044563 MsG0680030356.01.T01:intron 40.0%
GAATCACTGATGGGAAATTG+AGG + Chr6:1045644-1045663 MsG0680030356.01.T01:CDS 40.0%
GAGATGAAAATTTCGAGGCA+GGG + Chr6:1044549-1044568 MsG0680030356.01.T01:intron 40.0%
GCAGTTTGGGTAACTATACT+TGG + Chr6:1045899-1045918 MsG0680030356.01.T01:intron 40.0%
GCATGCGATTTGACTCATTA+AGG + Chr6:1044715-1044734 MsG0680030356.01.T01:intron 40.0%
GCTTATCCAGCACTGTATTT+AGG - Chr6:1048304-1048323 None:intergenic 40.0%
GGAATTTCCTGAGATTGAAC+AGG - Chr6:1047615-1047634 None:intergenic 40.0%
GGTCAAACAACACGATATAG+GGG + Chr6:1044590-1044609 MsG0680030356.01.T01:intron 40.0%
GTATAGCATTAGGGTCTGTT+TGG + Chr6:1042833-1042852 MsG0680030356.01.T01:intron 40.0%
GTATCTTAACATGTGCCTTG+AGG + Chr6:1046451-1046470 MsG0680030356.01.T01:intron 40.0%
GTCGATGAAATCGTTGTTGT+TGG - Chr6:1042271-1042290 None:intergenic 40.0%
GTCTGCTGATATTGTTGATG+CGG - Chr6:1047696-1047715 None:intergenic 40.0%
GTTGTTTAACATGTGCCCTA+AGG - Chr6:1046260-1046279 None:intergenic 40.0%
TAAATTGTGGTTGGCAGAGA+TGG + Chr6:1043339-1043358 MsG0680030356.01.T01:intron 40.0%
TAGAGATCATGTGAGGGAAA+CGG + Chr6:1048244-1048263 MsG0680030356.01.T01:CDS 40.0%
TATCGCACCATCTTGGTTTA+GGG + Chr6:1045344-1045363 MsG0680030356.01.T01:intron 40.0%
TCAAACAAGCCAATCCAAAG+AGG + Chr6:1043219-1043238 MsG0680030356.01.T01:intron 40.0%
TCACCATCTTGAGAGTTCTA+TGG + Chr6:1045588-1045607 MsG0680030356.01.T01:CDS 40.0%
TCTTAGGATAATGCTAGGGA+GGG + Chr6:1043964-1043983 MsG0680030356.01.T01:intron 40.0%
TGATCAGGAAGTGAACGAAT+GGG - Chr6:1042420-1042439 None:intergenic 40.0%
TGTAGCGTCGTGTAATACAT+AGG + Chr6:1045307-1045326 MsG0680030356.01.T01:intron 40.0%
TGTGAACTTCTGAATGGAGA+AGG + Chr6:1044520-1044539 MsG0680030356.01.T01:intron 40.0%
TGTGCAGAACTATGGTTCTT+TGG + Chr6:1045405-1045424 MsG0680030356.01.T01:intron 40.0%
TTAATGTTAGAAGTTGGGGC+AGG - Chr6:1045717-1045736 None:intergenic 40.0%
TTACTTAGTGGGATATGGCT+TGG + Chr6:1042802-1042821 MsG0680030356.01.T01:intron 40.0%
TTCTTAGGATAATGCTAGGG+AGG + Chr6:1043963-1043982 MsG0680030356.01.T01:intron 40.0%
TTGAAGGTTTATGAGGAAGG+GGG + Chr6:1048469-1048488 MsG0680030356.01.T01:three_prime_UTR 40.0%
TTTCCCTCACATGATCTCTA+GGG - Chr6:1048244-1048263 None:intergenic 40.0%
! ATGCAGTAGGTATTGCTTGT+GGG - Chr6:1048133-1048152 None:intergenic 40.0%
! ATGGGTTGAAAATCGTAGCT+AGG - Chr6:1042402-1042421 None:intergenic 40.0%
! ATGTAGCCGACTTTACTTAG+TGG + Chr6:1042790-1042809 MsG0680030356.01.T01:intron 40.0%
! CGATGATGGTTTATGAGGAA+GGG + Chr6:1048427-1048446 MsG0680030356.01.T01:three_prime_UTR 40.0%
! GATGATGGTTTATGAGGAAG+GGG + Chr6:1048428-1048447 MsG0680030356.01.T01:three_prime_UTR 40.0%
! GATGTTGAATGCACGCTTTT+TGG + Chr6:1046328-1046347 MsG0680030356.01.T01:intron 40.0%
! GGATTCTTTTGAACCTGCAA+AGG + Chr6:1045426-1045445 MsG0680030356.01.T01:CDS 40.0%
! GGTAAGGCATCCTGAATAAA+AGG - Chr6:1048838-1048857 None:intergenic 40.0%
! GTCACTTTAGTTAACTCTGG+GGG + Chr6:1046062-1046081 MsG0680030356.01.T01:intron 40.0%
! TGATTCTGCCTAGGATTAGT+TGG + Chr6:1044172-1044191 MsG0680030356.01.T01:intron 40.0%
! TGTAGCCGACTTTACTTAGT+GGG + Chr6:1042791-1042810 MsG0680030356.01.T01:intron 40.0%
! TTTCGCGATGATGGTTTATG+AGG + Chr6:1048422-1048441 MsG0680030356.01.T01:three_prime_UTR 40.0%
! TTTTCTACAGTCACCTTTGC+AGG - Chr6:1045442-1045461 None:intergenic 40.0%
!! AAAGGCATCATCACAGATAG+AGG - Chr6:1046523-1046542 None:intergenic 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG - Chr6:1046469-1046488 None:intergenic 40.0%
!! ATAATGGATCTAAGCCATGG+AGG + Chr6:1042234-1042253 MsG0680030356.01.T01:CDS 40.0%
!! ATTCTGCCTAGGATTAGTTG+GGG + Chr6:1044174-1044193 MsG0680030356.01.T01:intron 40.0%
!! ATTTGGGTTGATCCATCTTG+AGG + Chr6:1048746-1048765 MsG0680030356.01.T01:three_prime_UTR 40.0%
!! CAGATAATGGATCTAAGCCA+TGG + Chr6:1042231-1042250 MsG0680030356.01.T01:CDS 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG + Chr6:1046242-1046261 MsG0680030356.01.T01:intron 40.0%
!! CTGAGAGTATTGATGATGAG+GGG - Chr6:1047718-1047737 None:intergenic 40.0%
!! CTTCATCGTTTTCAAGACCT+TGG + Chr6:1042445-1042464 MsG0680030356.01.T01:CDS 40.0%
!! GATTCTGCCTAGGATTAGTT+GGG + Chr6:1044173-1044192 MsG0680030356.01.T01:intron 40.0%
!! GCTGAGAGTATTGATGATGA+GGG - Chr6:1047719-1047738 None:intergenic 40.0%
!! GCTTTGAAGGTTTATGAGGA+AGG + Chr6:1048466-1048485 MsG0680030356.01.T01:three_prime_UTR 40.0%
!! GGGTTTCTGAAGTACAGAAA+AGG + Chr6:1044569-1044588 MsG0680030356.01.T01:intron 40.0%
!! GTGAGTTCTGGTTTCTACTT+GGG - Chr6:1045572-1045591 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG + Chr6:1046241-1046260 MsG0680030356.01.T01:intron 40.0%
AATGCAAGCTCAGCTACAAC+TGG + Chr6:1047299-1047318 MsG0680030356.01.T01:CDS 45.0%
ACCTCAACTGCAATCTTCCA+TGG + Chr6:1047788-1047807 MsG0680030356.01.T01:CDS 45.0%
ACCTGTGAGGCTATATTGTG+TGG - Chr6:1046564-1046583 None:intergenic 45.0%
ACCTTTCGCTCACAATAGCT+GGG + Chr6:1043366-1043385 MsG0680030356.01.T01:intron 45.0%
ACTCTCAAGATGGTGAGTTC+TGG - Chr6:1045584-1045603 None:intergenic 45.0%
ACTGAGCCATATCGATATGG+CGG + Chr6:1048008-1048027 MsG0680030356.01.T01:CDS 45.0%
AGGTGGCAAACTTTGTTGAG+GGG - Chr6:1047517-1047536 None:intergenic 45.0%
AGTCGACAAAGTTGCCACTA+TGG + Chr6:1048214-1048233 MsG0680030356.01.T01:CDS 45.0%
ATAAGCACTAAGGGCCTGTT+TGG - Chr6:1043057-1043076 None:intergenic 45.0%
ATAGTGGCGCTATAGCATAG+CGG + Chr6:1043761-1043780 MsG0680030356.01.T01:intron 45.0%
ATATGCAGCAACAGAGAGGT+TGG + Chr6:1048345-1048364 MsG0680030356.01.T01:CDS 45.0%
ATCATGTGAGGGAAACGGTT+CGG + Chr6:1048249-1048268 MsG0680030356.01.T01:CDS 45.0%
ATGGAAGATTGCAGTTGAGG+TGG - Chr6:1047789-1047808 None:intergenic 45.0%
CAACACGATATAGGGGAACA+AGG + Chr6:1044597-1044616 MsG0680030356.01.T01:intron 45.0%
CAACCTTCCCAACAGTTCTA+TGG + Chr6:1047903-1047922 MsG0680030356.01.T01:CDS 45.0%
CACAGAAGACATGAACAGAG+AGG + Chr6:1044454-1044473 MsG0680030356.01.T01:intron 45.0%
CATAAGGTGGTTCCTCTAGA+TGG - Chr6:1047818-1047837 None:intergenic 45.0%
CCACAATACCAACCTCAAGA+TGG - Chr6:1048761-1048780 None:intergenic 45.0%
CCATATCGATATGGCTCAGT+AGG - Chr6:1048008-1048027 None:intergenic 45.0%
CCCAGCCAACATACACAAAT+GGG - Chr6:1046166-1046185 None:intergenic 45.0%
CCTACTGAGCCATATCGATA+TGG + Chr6:1048005-1048024 MsG0680030356.01.T01:CDS 45.0%
CCTCAACTGCAATCTTCCAT+GGG + Chr6:1047789-1047808 MsG0680030356.01.T01:CDS 45.0%
CCTGTGAGGCTATATTGTGT+GGG - Chr6:1046563-1046582 None:intergenic 45.0%
CGGTGTTCCATAGAACTGTT+GGG - Chr6:1047913-1047932 None:intergenic 45.0%
CTGTGAGGCTATATTGTGTG+GGG - Chr6:1046562-1046581 None:intergenic 45.0%
GAGGTGGCAAACTTTGTTGA+GGG - Chr6:1047518-1047537 None:intergenic 45.0%
GATTCCCTAGAGATCATGTG+AGG + Chr6:1048237-1048256 MsG0680030356.01.T01:CDS 45.0%
GCATTAGGGTCTGTTTGGAT+TGG + Chr6:1042838-1042857 MsG0680030356.01.T01:intron 45.0%
GCGAGTTACTCTTCTGGATA+TGG + Chr6:1047969-1047988 MsG0680030356.01.T01:CDS 45.0%
GTCACAACTACCTAACGCTT+CGG + Chr6:1048055-1048074 MsG0680030356.01.T01:CDS 45.0%
GTCGACAAAGTTGCCACTAT+GGG + Chr6:1048215-1048234 MsG0680030356.01.T01:CDS 45.0%
GTCTGAGAAGGAACATAAGG+TGG - Chr6:1047831-1047850 None:intergenic 45.0%
GTTCCATAGAACTGTTGGGA+AGG - Chr6:1047909-1047928 None:intergenic 45.0%
GTTTCCCTCACATGATCTCT+AGG - Chr6:1048245-1048264 None:intergenic 45.0%
TACTTAGGGCCTCTTTGGAT+TGG - Chr6:1043231-1043250 None:intergenic 45.0%
TAGAACTGTTGGGAAGGTTG+AGG - Chr6:1047903-1047922 None:intergenic 45.0%
TATCGCTTCTTTCGCGATGA+TGG + Chr6:1048413-1048432 MsG0680030356.01.T01:three_prime_UTR 45.0%
TCCCAGCCAACATACACAAA+TGG - Chr6:1046167-1046186 None:intergenic 45.0%
TCCCATTTGTGTATGTTGGC+TGG + Chr6:1046162-1046181 MsG0680030356.01.T01:intron 45.0%
TGAAAGATGACTTCCACGCA+AGG - Chr6:1044414-1044433 None:intergenic 45.0%
TGATGGGAAATTGAGGCTGT+TGG + Chr6:1045651-1045670 MsG0680030356.01.T01:CDS 45.0%
TGCTGATATTGTTGATGCGG+AGG - Chr6:1047693-1047712 None:intergenic 45.0%
TGGAAGATGATGATCCTCCA+TGG - Chr6:1042251-1042270 None:intergenic 45.0%
TGGCTCCCATTTGTGTATGT+TGG + Chr6:1046158-1046177 MsG0680030356.01.T01:intron 45.0%
TGGGAAAATGGTGGTCATGT+GGG + Chr6:1046182-1046201 MsG0680030356.01.T01:intron 45.0%
TTGGGAGGATAAGTCTGAGA+AGG - Chr6:1047843-1047862 None:intergenic 45.0%
! AACAGGGGTGCATGATATCA+AGG + Chr6:1047263-1047282 MsG0680030356.01.T01:CDS 45.0%
! ATCTCTAGGGAATCCCATAG+TGG - Chr6:1048231-1048250 None:intergenic 45.0%
! ATCTCTCTGAGGAACAGTTG+GGG - Chr6:1047577-1047596 None:intergenic 45.0%
! CCCATTTGTGTATGTTGGCT+GGG + Chr6:1046163-1046182 MsG0680030356.01.T01:intron 45.0%
! GATCTCTCTGAGGAACAGTT+GGG - Chr6:1047578-1047597 None:intergenic 45.0%
! GATGCAGTAGGTATTGCTTG+TGG - Chr6:1048134-1048153 None:intergenic 45.0%
! GATGGTGGTTCATATCCTTG+TGG - Chr6:1047936-1047955 None:intergenic 45.0%
! GCGATGATGGTTTATGAGGA+AGG + Chr6:1048426-1048445 MsG0680030356.01.T01:three_prime_UTR 45.0%
! GGCAGTTGGTATTGCTGATT+TGG - Chr6:1047636-1047655 None:intergenic 45.0%
! GTGTATGTTGGCTGGGAAAA+TGG + Chr6:1046170-1046189 MsG0680030356.01.T01:intron 45.0%
! TATGTTGGCTGGGAAAATGG+TGG + Chr6:1046173-1046192 MsG0680030356.01.T01:intron 45.0%
! TGATTTGGAAGTTGAGCTGG+AGG - Chr6:1047537-1047556 None:intergenic 45.0%
! TTCTTTTGTGGACTTCTGGC+TGG - Chr6:1044361-1044380 None:intergenic 45.0%
! TTGCAGTTGAGGTGGATTTC+CGG - Chr6:1047781-1047800 None:intergenic 45.0%
!! AACAGAGAGGTTGGTTTGGT+AGG + Chr6:1048354-1048373 MsG0680030356.01.T01:CDS 45.0%
!! ACAGATGAAGTTTGCTGCAC+AGG - Chr6:1047390-1047409 None:intergenic 45.0%
!! CCATCTTGAGGTTGGTATTG+TGG + Chr6:1048758-1048777 MsG0680030356.01.T01:three_prime_UTR 45.0%
!! GGCTGAGAGTATTGATGATG+AGG - Chr6:1047720-1047739 None:intergenic 45.0%
!! GGGACCTGAGAGTATTGATT+TGG - Chr6:1047552-1047571 None:intergenic 45.0%
!! GGTGAGTTCTGGTTTCTACT+TGG - Chr6:1045573-1045592 None:intergenic 45.0%
!! TCTTTTGTGGACTTCTGGCT+GGG - Chr6:1044360-1044379 None:intergenic 45.0%
!! TTCTAGAAGGTGTTAGTGCG+CGG + Chr6:1045542-1045561 MsG0680030356.01.T01:CDS 45.0%
!! TTCTGCCTAGGATTAGTTGG+GGG + Chr6:1044175-1044194 MsG0680030356.01.T01:intron 45.0%
!!! ATTATTTTAAATTTCTTTAA+CGG + Chr6:1046789-1046808 MsG0680030356.01.T01:intron 5.0%
AACTGTTGGGAAGGTTGAGG+AGG - Chr6:1047900-1047919 None:intergenic 50.0%
ACAACTACCTAACGCTTCGG+CGG + Chr6:1048058-1048077 MsG0680030356.01.T01:CDS 50.0%
ACTCTCAAGCAATGCCAGGT+CGG - Chr6:1043475-1043494 None:intergenic 50.0%
ACTGCATCTGCAGTAAGTGG+TGG + Chr6:1048146-1048165 MsG0680030356.01.T01:CDS 50.0%
AGGGTCGAGAGAGATGGAAA+AGG + Chr6:1044474-1044493 MsG0680030356.01.T01:intron 50.0%
ATGTTAGAAGTTGGGGCAGG+AGG - Chr6:1045714-1045733 None:intergenic 50.0%
CCACTTACTGCAGATGCAGT+AGG - Chr6:1048146-1048165 None:intergenic 50.0%
CCCACACAATATAGCCTCAC+AGG + Chr6:1046560-1046579 MsG0680030356.01.T01:intron 50.0%
CCCATGGAAGATTGCAGTTG+AGG - Chr6:1047792-1047811 None:intergenic 50.0%
CCTACTGCATCTGCAGTAAG+TGG + Chr6:1048143-1048162 MsG0680030356.01.T01:CDS 50.0%
CCTTTCGCTCACAATAGCTG+GGG + Chr6:1043367-1043386 MsG0680030356.01.T01:intron 50.0%
CTGGGAAAATGGTGGTCATG+TGG + Chr6:1046181-1046200 MsG0680030356.01.T01:intron 50.0%
GAAACCACGGGGATTGATTG+TGG - Chr6:1047468-1047487 None:intergenic 50.0%
GACCTTTCGCTCACAATAGC+TGG + Chr6:1043365-1043384 MsG0680030356.01.T01:intron 50.0%
GCGGTGTTCCATAGAACTGT+TGG - Chr6:1047914-1047933 None:intergenic 50.0%
GCTGCTGAGTTAAAGGCAGT+TGG - Chr6:1047650-1047669 None:intergenic 50.0%
GGAGGTGGCAAACTTTGTTG+AGG - Chr6:1047519-1047538 None:intergenic 50.0%
GGATGTGGCTGCTGAGTTAA+AGG - Chr6:1047657-1047676 None:intergenic 50.0%
GGCAAGTATGGATCTCTCTG+AGG - Chr6:1047588-1047607 None:intergenic 50.0%
GGTGATATGCAGCAACAGAG+AGG + Chr6:1048341-1048360 MsG0680030356.01.T01:CDS 50.0%
GGTGGCAAACTTTGTTGAGG+GGG - Chr6:1047516-1047535 None:intergenic 50.0%
GGTGGTTCATATCCTTGTGG+CGG - Chr6:1047933-1047952 None:intergenic 50.0%
GTGTATGCTCTCGTGTAACC+AGG + Chr6:1045803-1045822 MsG0680030356.01.T01:intron 50.0%
GTTCGGAAGCTGACAGAGAA+TGG + Chr6:1048266-1048285 MsG0680030356.01.T01:CDS 50.0%
TCCTGAGATTGAACAGGTGG+TGG - Chr6:1047609-1047628 None:intergenic 50.0%
TCTGAGGAACAGTTGGGGTT+GGG - Chr6:1047572-1047591 None:intergenic 50.0%
TCTGCAGTAAGTGGTGGTTC+AGG + Chr6:1048152-1048171 MsG0680030356.01.T01:CDS 50.0%
TCTTCCACAATCAATCCCCG+TGG + Chr6:1047461-1047480 MsG0680030356.01.T01:CDS 50.0%
TGCATTAGGGGGAGAAACCA+CGG - Chr6:1047481-1047500 None:intergenic 50.0%
TGCTACCCCCAACTAATCCT+AGG - Chr6:1044183-1044202 None:intergenic 50.0%
TGTTAGAAGTTGGGGCAGGA+GGG - Chr6:1045713-1045732 None:intergenic 50.0%
TGTTGTGGAGGTAGATGAGG+CGG - Chr6:1047744-1047763 None:intergenic 50.0%
TTCCATGGGTCACCATCTAG+AGG + Chr6:1047803-1047822 MsG0680030356.01.T01:CDS 50.0%
TTCCTCTAGATGGTGACCCA+TGG - Chr6:1047808-1047827 None:intergenic 50.0%
TTCTATGGAACACCGCCACA+AGG + Chr6:1047918-1047937 MsG0680030356.01.T01:CDS 50.0%
TTCTCCTGGAGCTGGTAACA+GGG + Chr6:1048175-1048194 MsG0680030356.01.T01:CDS 50.0%
TTGCTGCACAGGATCTGATG+TGG - Chr6:1047379-1047398 None:intergenic 50.0%
TTTGGAAGTTGAGCTGGAGG+TGG - Chr6:1047534-1047553 None:intergenic 50.0%
! ACTTCCACGCAAGGTTCTAG+TGG - Chr6:1044405-1044424 None:intergenic 50.0%
! AGAAACTCGTGGAAGTGCAG+AGG + Chr6:1043539-1043558 MsG0680030356.01.T01:intron 50.0%
! AGGTTGAGGAGGTGCATTAG+GGG - Chr6:1047493-1047512 None:intergenic 50.0%
! CAGCAACAGAGAGGTTGGTT+TGG + Chr6:1048350-1048369 MsG0680030356.01.T01:CDS 50.0%
! CTTCCACGCAAGGTTCTAGT+GGG - Chr6:1044404-1044423 None:intergenic 50.0%
! GAGGTTGAGGAGGTGCATTA+GGG - Chr6:1047494-1047513 None:intergenic 50.0%
! GGATCTCTCTGAGGAACAGT+TGG - Chr6:1047579-1047598 None:intergenic 50.0%
! GGGTTGATCCATCTTGAGGT+TGG + Chr6:1048750-1048769 MsG0680030356.01.T01:three_prime_UTR 50.0%
! GGTGGATTTCCGGATGAATG+CGG - Chr6:1047771-1047790 None:intergenic 50.0%
! GTATTGCTTGTGGGAGTACG+CGG - Chr6:1048124-1048143 None:intergenic 50.0%
! TATTGCTTGTGGGAGTACGC+GGG - Chr6:1048123-1048142 None:intergenic 50.0%
! TGAACAGGTGGTGGCAAGTA+TGG - Chr6:1047600-1047619 None:intergenic 50.0%
! TTCCACGCAAGGTTCTAGTG+GGG - Chr6:1044403-1044422 None:intergenic 50.0%
! TTGAAGCATCAACAGCGCTC+TGG - Chr6:1045468-1045487 None:intergenic 50.0%
!! TATGGCGGACCACCTCAATA+TGG + Chr6:1048023-1048042 MsG0680030356.01.T01:CDS 50.0%
AATGGTGGTCATGTGGGCCT+AGG + Chr6:1046188-1046207 MsG0680030356.01.T01:intron 55.0%
ACAGAGAGGGTCGAGAGAGA+TGG + Chr6:1044468-1044487 MsG0680030356.01.T01:intron 55.0%
AGCAGCCACATCCTCAACCA+GGG + Chr6:1047664-1047683 MsG0680030356.01.T01:CDS 55.0%
ATGAGGAAGGGGGACTTCGT+GGG + Chr6:1048479-1048498 MsG0680030356.01.T01:three_prime_UTR 55.0%
ATGGTGGTCATGTGGGCCTA+GGG + Chr6:1046189-1046208 MsG0680030356.01.T01:intron 55.0%
CAACAGCCACCGCATTCATC+CGG + Chr6:1047759-1047778 MsG0680030356.01.T01:CDS 55.0%
CACAGGATCTGATGTGGCAC+GGG - Chr6:1047373-1047392 None:intergenic 55.0%
CATTAGGGGGAGAAACCACG+GGG - Chr6:1047479-1047498 None:intergenic 55.0%
CCAGAAGAGTAACTCGCACC+AGG - Chr6:1047966-1047985 None:intergenic 55.0%
CCCCAGCTATTGTGAGCGAA+AGG - Chr6:1043370-1043389 None:intergenic 55.0%
CCTGGTGCGAGTTACTCTTC+TGG + Chr6:1047963-1047982 MsG0680030356.01.T01:CDS 55.0%
CTTTGTTGAGGGGGAGGTTG+AGG - Chr6:1047507-1047526 None:intergenic 55.0%
GAACCACCATCGAGTAGACC+TGG + Chr6:1047945-1047964 MsG0680030356.01.T01:CDS 55.0%
GATGAATGCGGTGGCTGTTG+TGG - Chr6:1047759-1047778 None:intergenic 55.0%
GCACACTCTCAAGCAATGCC+AGG - Chr6:1043479-1043498 None:intergenic 55.0%
GCACAGGATCTGATGTGGCA+CGG - Chr6:1047374-1047393 None:intergenic 55.0%
GCATTAGGGGGAGAAACCAC+GGG - Chr6:1047480-1047499 None:intergenic 55.0%
GCCACCACCTGTTCAATCTC+AGG + Chr6:1047605-1047624 MsG0680030356.01.T01:CDS 55.0%
GCTCACAATAGCTGGGGTGT+GGG + Chr6:1043373-1043392 MsG0680030356.01.T01:intron 55.0%
GGATAATGCTAGGGAGGGTG+AGG + Chr6:1043969-1043988 MsG0680030356.01.T01:intron 55.0%
GGATTTCCGGATGAATGCGG+TGG - Chr6:1047768-1047787 None:intergenic 55.0%
GGCAAACTTTGTTGAGGGGG+AGG - Chr6:1047513-1047532 None:intergenic 55.0%
GGCTGTTGTGGAGGTAGATG+AGG - Chr6:1047747-1047766 None:intergenic 55.0%
GGTGGTCCGCCATATCGATA+TGG - Chr6:1048017-1048036 None:intergenic 55.0%
GTTCTCCTGGAGCTGGTAAC+AGG + Chr6:1048174-1048193 MsG0680030356.01.T01:CDS 55.0%
TAGGGAGGGTGAGGCTCATT+GGG + Chr6:1043978-1043997 MsG0680030356.01.T01:intron 55.0%
TATGAGGAAGGGGGACTTCG+TGG + Chr6:1048478-1048497 MsG0680030356.01.T01:three_prime_UTR 55.0%
TCTAGTGGGGCTGAAGGTAG+AGG - Chr6:1044390-1044409 None:intergenic 55.0%
TGGGTAACCGTTTCCACCAC+TGG - Chr6:1048087-1048106 None:intergenic 55.0%
TGTGGGCCTAGGGGATATCA+AGG + Chr6:1046199-1046218 MsG0680030356.01.T01:intron 55.0%
! AGTGGTGGTTCAGGTTCTCC+TGG + Chr6:1048161-1048180 MsG0680030356.01.T01:CDS 55.0%
! CAAGGTTCTAGTGGGGCTGA+AGG - Chr6:1044396-1044415 None:intergenic 55.0%
! CTCTGAGGAACAGTTGGGGT+TGG - Chr6:1047573-1047592 None:intergenic 55.0%
! CTGGGGTGTGGGTTATACTC+TGG + Chr6:1043384-1043403 MsG0680030356.01.T01:intron 55.0%
! GGAGGTTGAGGAGGTGCATT+AGG - Chr6:1047495-1047514 None:intergenic 55.0%
! GGTTGAGGAGGTGCATTAGG+GGG - Chr6:1047492-1047511 None:intergenic 55.0%
AGCCCCACTAGAACCTTGCG+TGG + Chr6:1044398-1044417 MsG0680030356.01.T01:intron 60.0%
AGGGAGGGTGAGGCTCATTG+GGG + Chr6:1043979-1043998 MsG0680030356.01.T01:intron 60.0%
CAGCAGCCACATCCTCAACC+AGG + Chr6:1047663-1047682 MsG0680030356.01.T01:CDS 60.0%
CGCTCACAATAGCTGGGGTG+TGG + Chr6:1043372-1043391 MsG0680030356.01.T01:intron 60.0%
CTAGGGAGGGTGAGGCTCAT+TGG + Chr6:1043977-1043996 MsG0680030356.01.T01:intron 60.0%
CTCGCACCAGGTCTACTCGA+TGG - Chr6:1047954-1047973 None:intergenic 60.0%
GAAGGTTGAGGAGGTCCGCT+GGG - Chr6:1047891-1047910 None:intergenic 60.0%
GAATGCGGTGGCTGTTGTGG+AGG - Chr6:1047756-1047775 None:intergenic 60.0%
GCACCAGGTCTACTCGATGG+TGG - Chr6:1047951-1047970 None:intergenic 60.0%
GCAGCCACATCCTCAACCAG+GGG + Chr6:1047665-1047684 MsG0680030356.01.T01:CDS 60.0%
GGAACCCTGTTACCAGCTCC+AGG - Chr6:1048182-1048201 None:intergenic 60.0%
TGGTGGTCATGTGGGCCTAG+GGG + Chr6:1046190-1046209 MsG0680030356.01.T01:intron 60.0%
TGTGGAGGTAGATGAGGCGG+TGG - Chr6:1047741-1047760 None:intergenic 60.0%
TGTTGAGGGGGAGGTTGAGG+AGG - Chr6:1047504-1047523 None:intergenic 60.0%
! AGATGGTGGCTGGCGGAGAT+TGG - Chr6:1047862-1047881 None:intergenic 60.0%
! GATGGTGGCTGGCGGAGATT+GGG - Chr6:1047861-1047880 None:intergenic 60.0%
! GCGGCTTCCAGTGGTGGAAA+CGG + Chr6:1048077-1048096 MsG0680030356.01.T01:CDS 60.0%
! GGTTCAGGTTCTCCTGGAGC+TGG + Chr6:1048167-1048186 MsG0680030356.01.T01:CDS 60.0%
!! GTTGGTGGTTCTGACCGACC+TGG + Chr6:1043458-1043477 MsG0680030356.01.T01:intron 60.0%
AACGCTTCGGCGGCTTCCAG+TGG + Chr6:1048068-1048087 MsG0680030356.01.T01:CDS 65.0%
AGGAAGGGGGACTTCGTGGG+TGG + Chr6:1048482-1048501 MsG0680030356.01.T01:three_prime_UTR 65.0%
CCACCATCTCAGCCACCCAG+CGG + Chr6:1047873-1047892 MsG0680030356.01.T01:CDS 65.0%
GGAAGGTTGAGGAGGTCCGC+TGG - Chr6:1047892-1047911 None:intergenic 65.0%
GGGAGGGTGAGGCTCATTGG+GGG + Chr6:1043980-1043999 MsG0680030356.01.T01:intron 65.0%
GGTGCCCCTGGTTGAGGATG+TGG - Chr6:1047672-1047691 None:intergenic 65.0%
! CTGGAAGCCGCCGAAGCGTT+AGG - Chr6:1048068-1048087 None:intergenic 65.0%
! GTGGCTGAGATGGTGGCTGG+CGG - Chr6:1047869-1047888 None:intergenic 65.0%
! GTGGGAGTACGCGGGCAGTA+GGG - Chr6:1048115-1048134 None:intergenic 65.0%
! TGGGTGGCTGAGATGGTGGC+TGG - Chr6:1047872-1047891 None:intergenic 65.0%
! TGTGGGAGTACGCGGGCAGT+AGG - Chr6:1048116-1048135 None:intergenic 65.0%
!! TGTTGATGCGGAGGTGCCCC+TGG - Chr6:1047684-1047703 None:intergenic 65.0%
ACGCGGGCAGTAGGGAGCTG+TGG - Chr6:1048107-1048126 None:intergenic 70.0%
CCGCTGGGTGGCTGAGATGG+TGG - Chr6:1047876-1047895 None:intergenic 70.0%
CGCGGGCAGTAGGGAGCTGT+GGG - Chr6:1048106-1048125 None:intergenic 70.0%
GCTTCGGCGGCTTCCAGTGG+TGG + Chr6:1048071-1048090 MsG0680030356.01.T01:CDS 70.0%
GGTCCGCTGGGTGGCTGAGA+TGG - Chr6:1047879-1047898 None:intergenic 70.0%
GGTGGCTGGCGGAGATTGGG+AGG - Chr6:1047858-1047877 None:intergenic 70.0%
GGTTGAGGAGGTCCGCTGGG+TGG - Chr6:1047888-1047907 None:intergenic 70.0%
!! TGCGGAGGTGCCCCTGGTTG+AGG - Chr6:1047678-1047697 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 1042047 1048896 1042047 ID=MsG0680030356.01;Name=MsG0680030356.01
Chr6 mRNA 1042047 1048896 1042047 ID=MsG0680030356.01.T01;Parent=MsG0680030356.01;Name=MsG0680030356.01.T01;_AED=0.38;_eAED=0.38;_QI=157|1|1|1|1|1|3|517|561
Chr6 exon 1042047 1042488 1042047 ID=MsG0680030356.01.T01:exon:2378;Parent=MsG0680030356.01.T01
Chr6 exon 1045412 1045690 1045412 ID=MsG0680030356.01.T01:exon:2379;Parent=MsG0680030356.01.T01
Chr6 exon 1047258 1048896 1047258 ID=MsG0680030356.01.T01:exon:2380;Parent=MsG0680030356.01.T01
Chr6 five_prime_UTR 1042047 1042203 1042047 ID=MsG0680030356.01.T01:five_prime_utr;Parent=MsG0680030356.01.T01
Chr6 CDS 1042204 1042488 1042204 ID=MsG0680030356.01.T01:cds;Parent=MsG0680030356.01.T01
Chr6 CDS 1045412 1045690 1045412 ID=MsG0680030356.01.T01:cds;Parent=MsG0680030356.01.T01
Chr6 CDS 1047258 1048379 1047258 ID=MsG0680030356.01.T01:cds;Parent=MsG0680030356.01.T01
Chr6 three_prime_UTR 1048380 1048896 1048380 ID=MsG0680030356.01.T01:three_prime_utr;Parent=MsG0680030356.01.T01
Gene Sequence

>MsG0680030356.01.T01

ATGAATACGACGTCGTTTATGGACAAACAGATAATGGATCTAAGCCATGGAGGATCATCATCTTCCAACAACAACGATTTCATCGACCTTAACAAGAAGAATCGTGAACAACACGAAGAAGAAGAAGAAGAAGAAGATGATGATTCCTTAATTCATCACAAAAATGGCGGTGGAATCAAAACCGATGATATTGTTCCTAGCTACGATTTTCAACCCATTCGTTCACTTCCTGATCATTCTTCTTCATCGTTTTCAAGACCTTGGAATTCTGATTCCAATTCCAAAAACTATGGTTCTTTGGATTCTTTTGAACCTGCAAAGGTGACTGTAGAAAAGAACCAGAGCGCTGTTGATGCTTCAATTTTGTTAGAGATTGATCGAACAATGAAGAAACATATGGACAATTTGCATCATGTTCTAGAAGGTGTTAGTGCGCGGTTAACCCAAGTAGAAACCAGAACTCACCATCTTGAGAGTTCTATGGATGATTTGAAGGTATCTGTTGGAAATAATCATGGAATCACTGATGGGAAATTGAGGCTGTTGGAGAATATTCTTTCTGAGGTGCAAACAGGGGTGCATGATATCAAGGACAAACAAGATATAATGCAAGCTCAGCTACAACTGGCAAAACTACAAGTGTCTAAGACGACAGAGCAACAATCAGAAACTCAAACCCGTGCCACATCAGATCCTGTGCAGCAAACTTCATCTGTATCTGCATCTGCTCCCCTGCAAACTCAACAATATCTTCCTTCGTCTTATAATCTTCCACAATCAATCCCCGTGGTTTCTCCCCCTAATGCACCTCCTCAACCTCCCCCTCAACAAAGTTTGCCACCTCCAGCTCAACTTCCAAATCAATACTCTCAGGTCCCAACCCCAACTGTTCCTCAGAGAGATCCATACTTGCCACCACCTGTTCAATCTCAGGAAATTCCAAATCAGCAATACCAACTGCCTTTAACTCAGCAGCCACATCCTCAACCAGGGGCACCTCCGCATCAACAATATCAGCAGACCCCTCATCATCAATACTCTCAGCCACCGCCTCATCTACCTCCACAACAGCCACCGCATTCATCCGGAAATCCACCTCAACTGCAATCTTCCATGGGTCACCATCTAGAGGAACCACCTTATGTTCCTTCTCAGACTTATCCTCCCAATCTCCGCCAGCCACCATCTCAGCCACCCAGCGGACCTCCTCAACCTTCCCAACAGTTCTATGGAACACCGCCACAAGGATATGAACCACCATCGAGTAGACCTGGTGCGAGTTACTCTTCTGGATATGGTACATTATCTGGGCCTACTGAGCCATATCGATATGGCGGACCACCTCAATATGGTAGTAAACAGTCACAACTACCTAACGCTTCGGCGGCTTCCAGTGGTGGAAACGGTTACCCACAGCTCCCTACTGCCCGCGTACTCCCACAAGCAATACCTACTGCATCTGCAGTAAGTGGTGGTTCAGGTTCTCCTGGAGCTGGTAACAGGGTTCCTGTTGATGATATAGTCGACAAAGTTGCCACTATGGGATTCCCTAGAGATCATGTGAGGGAAACGGTTCGGAAGCTGACAGAGAATGGTCAAGCAGTTGACCTAAATACAGTGCTGGATAAGCTTATGAATGAAGGTGGTGGTGATATGCAGCAACAGAGAGGTTGGTTTGGTAGGTAA
Protein sequence

>MsG0680030356.01.T01

MNTTSFMDKQIMDLSHGGSSSSNNNDFIDLNKKNREQHEEEEEEEDDDSLIHHKNGGGIKTDDIVPSYDFQPIRSLPDHSSSSFSRPWNSDSNSKNYGSLDSFEPAKVTVEKNQSAVDASILLEIDRTMKKHMDNLHHVLEGVSARLTQVETRTHHLESSMDDLKVSVGNNHGITDGKLRLLENILSEVQTGVHDIKDKQDIMQAQLQLAKLQVSKTTEQQSETQTRATSDPVQQTSSVSASAPLQTQQYLPSSYNLPQSIPVVSPPNAPPQPPPQQSLPPPAQLPNQYSQVPTPTVPQRDPYLPPPVQSQEIPNQQYQLPLTQQPHPQPGAPPHQQYQQTPHHQYSQPPPHLPPQQPPHSSGNPPQLQSSMGHHLEEPPYVPSQTYPPNLRQPPSQPPSGPPQPSQQFYGTPPQGYEPPSSRPGASYSSGYGTLSGPTEPYRYGGPPQYGSKQSQLPNASAASSGGNGYPQLPTARVLPQAIPTASAVSGGSGSPGAGNRVPVDDIVDKVATMGFPRDHVRETVRKLTENGQAVDLNTVLDKLMNEGGGDMQQQRGWFGR*