AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022488.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022488.01.T01 MTR_4g090610 80.488 246 2 2 19 264 95 294 2.91e-137 388
MsG0480022488.01.T01 MTR_4g090610 80.488 246 2 2 19 264 184 383 3.17e-137 392
MsG0480022488.01.T01 MTR_4g090610 80.488 246 2 2 19 264 139 338 3.43e-137 390
MsG0480022488.01.T01 MTR_4g090610 75.472 159 8 1 19 177 95 222 1.29e-76 233
MsG0480022488.01.T01 MTR_4g090610 75.472 159 8 1 19 177 139 266 2.64e-76 234
MsG0480022488.01.T01 MTR_5g056160 48.988 247 77 4 19 264 97 295 1.04e-70 219
MsG0480022488.01.T01 MTR_1g110510 49.789 237 69 3 19 255 97 283 3.68e-70 218
MsG0480022488.01.T01 MTR_5g056140 48.548 241 75 4 19 258 97 289 7.83e-69 214
MsG0480022488.01.T01 MTR_2g012440 42.920 226 82 4 30 255 113 291 2.23e-58 188
MsG0480022488.01.T01 MTR_1g110510 42.935 184 55 3 19 202 97 230 5.64e-41 141
MsG0480022488.01.T01 MTR_5g056560 40.936 171 55 2 55 225 35 159 1.34e-37 131
MsG0480022488.01.T01 MTR_2g012440 40.741 162 50 3 30 191 113 228 6.43e-35 125
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022488.01.T01 AT4G21585 57.959 245 57 2 18 262 125 323 4.88e-95 282
MsG0480022488.01.T01 AT4G21585 57.787 244 57 2 19 262 100 297 2.13e-94 280
MsG0480022488.01.T01 AT4G21585 57.787 244 57 2 19 262 100 297 2.13e-94 280
MsG0480022488.01.T01 AT4G21585 51.838 272 57 3 19 262 100 325 4.21e-88 265
MsG0480022488.01.T01 AT4G21600 53.279 244 68 2 19 262 97 294 6.32e-85 256
MsG0480022488.01.T01 AT4G21590 51.261 238 70 2 27 264 103 294 1.16e-76 234
MsG0480022488.01.T01 AT4G21590 51.261 238 70 2 27 264 103 294 1.16e-76 234
MsG0480022488.01.T01 AT1G68290 48.523 237 75 3 19 255 100 289 9.36e-70 217
MsG0480022488.01.T01 AT1G11190 44.262 244 89 4 19 262 104 300 4.60e-65 205
MsG0480022488.01.T01 AT4G21585 50.820 183 44 2 18 200 125 261 1.33e-56 182
MsG0480022488.01.T01 AT4G21585 50.820 183 44 2 18 200 125 261 1.33e-56 182

Find 53 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAAATGATGTATCTATT+TGG 0.146576 4:-73171424 MsG0480022488.01.T01:CDS
ATCAGTGGCTTACTATAATA+TGG 0.147555 4:-73172583 MsG0480022488.01.T01:intron
CAAATTACTTCAACGTTTCT+TGG 0.171887 4:-73172971 MsG0480022488.01.T01:CDS
CTCACTTTCTGCAGGATATT+TGG 0.178656 4:-73171445 MsG0480022488.01.T01:CDS
TCCAATGATTCGTCCTTAAT+TGG 0.199927 4:-73170118 MsG0480022488.01.T01:three_prime_UTR
ACGTTTCTTGGAATTCTTAT+AGG 0.233107 4:-73172959 MsG0480022488.01.T01:CDS
TATATCGAATTAACCAATTA+AGG 0.296434 4:+73170105 None:intergenic
GTCAAATGATGTATCTATTT+GGG 0.305236 4:-73171423 MsG0480022488.01.T01:CDS
AGTCGAATTTCATGTTATAA+TGG 0.308899 4:+73170207 None:intergenic
TAGATGACTACTTCCTTTCT+CGG 0.331349 4:-73170406 MsG0480022488.01.T01:CDS
ACCAATTAAGGACGAATCAT+TGG 0.338112 4:+73170117 None:intergenic
GGAGACTGTCATGATTCTTA+TGG 0.364518 4:-73172938 MsG0480022488.01.T01:CDS
AACTTCAAAACCGGGATTGA+TGG 0.367743 4:-73172533 MsG0480022488.01.T01:CDS
CATAAGCATAGATGTGTTAC+TGG 0.369077 4:-73172914 MsG0480022488.01.T01:CDS
AAGAATGTTAACTTCAAAAC+CGG 0.385791 4:-73172542 MsG0480022488.01.T01:CDS
TGCTGAGAACCAGTGGGTTA+AGG 0.406278 4:+73170237 None:intergenic
TTACCTTCCAAAGTGCTTCC+CGG 0.426230 4:+73170915 None:intergenic
GCTTGAGCTATTCTGGTCTT+CGG 0.436083 4:+73170311 None:intergenic
AGATCTTTCAACTATGATAC+AGG 0.437289 4:-73171643 MsG0480022488.01.T01:CDS
CCTTTCTCGGTTGCCTATTG+TGG 0.442854 4:-73170393 MsG0480022488.01.T01:CDS
CCACAATAGGCAACCGAGAA+AGG 0.443563 4:+73170393 None:intergenic
GTATTAGGCACGCACCGATC+TGG 0.449100 4:+73171371 None:intergenic
CTGTTTCTTCCTTAACCCAC+TGG 0.470345 4:-73170246 MsG0480022488.01.T01:three_prime_UTR
TGCTACACCGGGAAGCACTT+TGG 0.480035 4:-73170922 MsG0480022488.01.T01:CDS
CAATAACAGTTCGTTGGTAC+AGG 0.485073 4:-73172341 MsG0480022488.01.T01:CDS
TGCTTCTGAGAGTATTAGCT+TGG 0.487668 4:-73170967 MsG0480022488.01.T01:CDS
TCCAGTAAAACCAACATGTA+GGG 0.497771 4:+73172380 None:intergenic
CTGGTGCAGCCCCTACATGT+TGG 0.499267 4:-73172390 MsG0480022488.01.T01:intron
TCAGTGGCTTACTATAATAT+GGG 0.501806 4:-73172582 MsG0480022488.01.T01:intron
ACTTCAAAACCGGGATTGAT+GGG 0.505263 4:-73172532 MsG0480022488.01.T01:CDS
GGTTGCCTATTGTGGAGAAA+AGG 0.523206 4:-73170385 MsG0480022488.01.T01:CDS
TCGGAGTGAAAATGCGGTTG+AGG 0.526357 4:+73170330 None:intergenic
CCACTGGTTCTCAGCAAAAG+AGG 0.545033 4:-73170230 MsG0480022488.01.T01:three_prime_UTR
ATAACCATTCCCATCAATCC+CGG 0.553224 4:+73172523 None:intergenic
GAAGTAATTTGTGAAGCAGA+TGG 0.553523 4:+73172983 None:intergenic
GCCTATTGTGGAGAAAAGGC+TGG 0.553535 4:-73170381 MsG0480022488.01.T01:CDS
GAAACTCAATAACAGTTCGT+TGG 0.576267 4:-73172347 MsG0480022488.01.T01:CDS
AAAACCGGGATTGATGGGAA+TGG 0.580362 4:-73172527 MsG0480022488.01.T01:CDS
TGCGTATAAGAATGCTACAC+CGG 0.595882 4:-73170934 MsG0480022488.01.T01:CDS
CTCCAGTAAAACCAACATGT+AGG 0.598758 4:+73172379 None:intergenic
TAACAGTTCGTTGGTACAGG+AGG 0.598967 4:-73172338 MsG0480022488.01.T01:CDS
ATCACGCAGCATGTCCAGAT+CGG 0.600826 4:-73171385 MsG0480022488.01.T01:intron
ACACCGGGAAGCACTTTGGA+AGG 0.605297 4:-73170918 MsG0480022488.01.T01:intron
CTATGATACAGGCTATTCAA+AGG 0.608724 4:-73171632 MsG0480022488.01.T01:CDS
AGAATGTTAACTTCAAAACC+GGG 0.614303 4:-73172541 MsG0480022488.01.T01:CDS
CTGTTATTGAGTTTCCACCT+AGG 0.618467 4:+73172355 None:intergenic
TGGCTTACTATAATATGGGT+AGG 0.620750 4:-73172578 MsG0480022488.01.T01:CDS
GTGGAGAAAAGGCTGGCTCA+AGG 0.620844 4:-73170374 MsG0480022488.01.T01:CDS
CCAGTAAAACCAACATGTAG+GGG 0.650544 4:+73172381 None:intergenic
GCGTATAAGAATGCTACACC+GGG 0.655576 4:-73170933 MsG0480022488.01.T01:CDS
TGGTCTTCGGAGTGAAAATG+CGG 0.658686 4:+73170324 None:intergenic
AATTACAGACAACTTGACAG+AGG 0.688210 4:-73172746 MsG0480022488.01.T01:intron
GAGAAAAGGCTGGCTCAAGG+TGG 0.772047 4:-73170371 MsG0480022488.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTTTAATAAAATAAAAGA+AGG + Chr4:73170925-73170944 None:intergenic 10.0%
!! TAATAAAAATTAAAATCACA+TGG - Chr4:73170595-73170614 MsG0480022488.01.T01:intron 10.0%
!!! TCTATAAACAAAAATATTTT+TGG - Chr4:73172198-73172217 MsG0480022488.01.T01:intron 10.0%
!! AATAAAATAAAAGAAGGAAA+AGG + Chr4:73170919-73170938 None:intergenic 15.0%
!! AATTAAAATGTAAGCATTTA+TGG - Chr4:73170240-73170259 MsG0480022488.01.T01:three_prime_UTR 15.0%
!! AATTTACTATATTATTGACA+AGG + Chr4:73171339-73171358 None:intergenic 15.0%
!! ATGGATCTATATATAATAAA+AGG - Chr4:73171061-73171080 MsG0480022488.01.T01:intron 15.0%
!! TATAGTAAATTTAGTATGTT+TGG - Chr4:73171348-73171367 MsG0480022488.01.T01:intron 15.0%
!!! TAAATTGATGTTTTTTCTTT+TGG - Chr4:73171534-73171553 MsG0480022488.01.T01:intron 15.0%
!! TAAATAAGAAGCAATTTCAA+AGG + Chr4:73171244-73171263 None:intergenic 20.0%
!! TATATCGAATTAACCAATTA+AGG + Chr4:73172973-73172992 None:intergenic 20.0%
!! TATCTAGTAATATGCAATTA+TGG + Chr4:73172018-73172037 None:intergenic 20.0%
!! TATGCATTTATTCAAATGAT+GGG - Chr4:73171496-73171515 MsG0480022488.01.T01:intron 20.0%
!! TATTTGTTCAATTGTTCATT+AGG + Chr4:73170424-73170443 None:intergenic 20.0%
!! TGTACTTCTTAAATTAAACT+AGG + Chr4:73170447-73170466 None:intergenic 20.0%
!! TGTTTATAGATGAAAAACTA+GGG + Chr4:73172188-73172207 None:intergenic 20.0%
!! TTATGCATTTATTCAAATGA+TGG - Chr4:73171495-73171514 MsG0480022488.01.T01:intron 20.0%
!! TTGTTTATAGATGAAAAACT+AGG + Chr4:73172189-73172208 None:intergenic 20.0%
!!! ATTACAAAATTTTGACAATG+AGG + Chr4:73171869-73171888 None:intergenic 20.0%
!!! TCCTTGTTTTATAAGAAAAA+GGG - Chr4:73172315-73172334 MsG0480022488.01.T01:intron 20.0%
!!! TTCCTTGTTTTATAAGAAAA+AGG - Chr4:73172314-73172333 MsG0480022488.01.T01:intron 20.0%
! AAATAAATTAGATAGGAGAG+GGG - Chr4:73171032-73171051 MsG0480022488.01.T01:intron 25.0%
! AACATCAATTTATCTATGCT+TGG + Chr4:73171526-73171545 None:intergenic 25.0%
! AACATGAATAGAATTCGATA+AGG + Chr4:73171932-73171951 None:intergenic 25.0%
! AAGAATGTTAACTTCAAAAC+CGG - Chr4:73170533-73170552 MsG0480022488.01.T01:intron 25.0%
! AAGTGAGTAAAAACAATAGT+TGG + Chr4:73171617-73171636 None:intergenic 25.0%
! AGAAATAAATTAGATAGGAG+AGG - Chr4:73171030-73171049 MsG0480022488.01.T01:intron 25.0%
! AGTCGAATTTCATGTTATAA+TGG + Chr4:73172871-73172890 None:intergenic 25.0%
! ATGCAATTATGGAAAATCAA+GGG + Chr4:73172007-73172026 None:intergenic 25.0%
! ATGCATTTATTCAAATGATG+GGG - Chr4:73171497-73171516 MsG0480022488.01.T01:intron 25.0%
! CTGGAAGAAATAAATTAGAT+AGG - Chr4:73171025-73171044 MsG0480022488.01.T01:intron 25.0%
! GAAATAAATTAGATAGGAGA+GGG - Chr4:73171031-73171050 MsG0480022488.01.T01:intron 25.0%
! GTCAAATGATGTATCTATTT+GGG - Chr4:73171652-73171671 MsG0480022488.01.T01:CDS 25.0%
! TATGCAATTATGGAAAATCA+AGG + Chr4:73172008-73172027 None:intergenic 25.0%
! TCATATTGTTCTTTGTACTT+GGG - Chr4:73172529-73172548 MsG0480022488.01.T01:CDS 25.0%
! TTGCAATCATCAAAAGTTAT+TGG + Chr4:73172570-73172589 None:intergenic 25.0%
!! AACCTAACTAACTTGTATAT+TGG - Chr4:73170844-73170863 MsG0480022488.01.T01:intron 25.0%
!! ACCTAACTAACTTGTATATT+GGG - Chr4:73170845-73170864 MsG0480022488.01.T01:intron 25.0%
!! AGATTTTGAACAATTTGGAT+AGG + Chr4:73172937-73172956 None:intergenic 25.0%
!! ATGCCATAGATTTTTAAACT+TGG - Chr4:73171111-73171130 MsG0480022488.01.T01:intron 25.0%
!! TCCCTTTTTCTTATAAAACA+AGG + Chr4:73172319-73172338 None:intergenic 25.0%
!! TTCAAAAAATTGTGCTTTTG+AGG - Chr4:73170635-73170654 MsG0480022488.01.T01:intron 25.0%
!! TTCTTGTACACATTTTCTTT+TGG - Chr4:73171277-73171296 MsG0480022488.01.T01:intron 25.0%
!! TTGGAAGATTTTGAACAATT+TGG + Chr4:73172942-73172961 None:intergenic 25.0%
!! TTTTGTATTCTGTTAGAAAG+TGG - Chr4:73171149-73171168 MsG0480022488.01.T01:intron 25.0%
!!! GTGTTCTTTTCTATTTTAAG+AGG - Chr4:73172389-73172408 MsG0480022488.01.T01:intron 25.0%
!!! TAAAAACAATAGTTGGTCTT+GGG + Chr4:73171610-73171629 None:intergenic 25.0%
!!! TGATTTTGCTGATTATATTC+AGG - Chr4:73172083-73172102 MsG0480022488.01.T01:intron 25.0%
!!! TGTTTACACTTTTTATTGCT+TGG - Chr4:73171790-73171809 MsG0480022488.01.T01:intron 25.0%
!!! TTGAGGTGATATTTTTTTTC+TGG - Chr4:73170652-73170671 MsG0480022488.01.T01:intron 25.0%
!!! TTGTTCATTAGGTTTTGAAT+AGG + Chr4:73170413-73170432 None:intergenic 25.0%
AAACTAGAGCAAAATGATGA+AGG + Chr4:73171743-73171762 None:intergenic 30.0%
AAATGTGTACAAGAACATAG+TGG + Chr4:73171272-73171291 None:intergenic 30.0%
AAGCAAAGAAATAAGTGTGA+TGG + Chr4:73171560-73171579 None:intergenic 30.0%
AAGTTGTCTGTAATTAAGAG+AGG + Chr4:73170324-73170343 None:intergenic 30.0%
ACGCCAAGTTTAAAAATCTA+TGG + Chr4:73171117-73171136 None:intergenic 30.0%
ACGTTTCTTGGAATTCTTAT+AGG - Chr4:73170116-73170135 MsG0480022488.01.T01:three_prime_UTR 30.0%
ACTATATTATTGACAAGGAC+AGG + Chr4:73171334-73171353 None:intergenic 30.0%
ACTGATGAAAATCAAGGATT+TGG + Chr4:73170478-73170497 None:intergenic 30.0%
AGAATGTTAACTTCAAAACC+GGG - Chr4:73170534-73170553 MsG0480022488.01.T01:intron 30.0%
AGATCTTTCAACTATGATAC+AGG - Chr4:73171432-73171451 MsG0480022488.01.T01:CDS 30.0%
ATATCATAACTTTACCTGCA+TGG - Chr4:73170953-73170972 MsG0480022488.01.T01:CDS 30.0%
ATCAGTGGCTTACTATAATA+TGG - Chr4:73170492-73170511 MsG0480022488.01.T01:intron 30.0%
CAAATTACTTCAACGTTTCT+TGG - Chr4:73170104-73170123 MsG0480022488.01.T01:three_prime_UTR 30.0%
CCAAATGAATACAAGAAACA+TGG + Chr4:73171842-73171861 None:intergenic 30.0%
CCATGTTTCTTGTATTCATT+TGG - Chr4:73171839-73171858 MsG0480022488.01.T01:intron 30.0%
CTCATATTGTTCTTTGTACT+TGG - Chr4:73172528-73172547 MsG0480022488.01.T01:CDS 30.0%
GAACAATATGAGTATATGAC+AGG + Chr4:73172520-73172539 None:intergenic 30.0%
GAGGAAAGTAAGTAAATTCA+AGG + Chr4:73170305-73170324 None:intergenic 30.0%
GGTCAAATGATGTATCTATT+TGG - Chr4:73171651-73171670 MsG0480022488.01.T01:CDS 30.0%
TAACTACTTACATACAACTG+AGG - Chr4:73172043-73172062 MsG0480022488.01.T01:intron 30.0%
TAAGAAGCAATTTCAAAGGT+AGG + Chr4:73171240-73171259 None:intergenic 30.0%
TCAGTGGCTTACTATAATAT+GGG - Chr4:73170493-73170512 MsG0480022488.01.T01:intron 30.0%
TGCATTTATTCAAATGATGG+GGG - Chr4:73171498-73171517 MsG0480022488.01.T01:intron 30.0%
TGCTTGTTTCATTTGAAGAT+AGG - Chr4:73170278-73170297 MsG0480022488.01.T01:three_prime_UTR 30.0%
! AAAATTTTGTAATCTTCGCC+TGG - Chr4:73171876-73171895 MsG0480022488.01.T01:intron 30.0%
! AAATCCTTGATTTTCATCAG+TGG - Chr4:73170477-73170496 MsG0480022488.01.T01:intron 30.0%
! ATCAATTCACTGTATTTTCC+AGG + Chr4:73171897-73171916 None:intergenic 30.0%
! ATCACACTTATTTCTTTGCT+TGG - Chr4:73171559-73171578 MsG0480022488.01.T01:intron 30.0%
! ATGTTCTTGTCACATTTTGT+TGG - Chr4:73170357-73170376 MsG0480022488.01.T01:CDS 30.0%
! GTAAAAACAATAGTTGGTCT+TGG + Chr4:73171611-73171630 None:intergenic 30.0%
! TATACAAGTTAGTTAGGTTG+CGG + Chr4:73170843-73170862 None:intergenic 30.0%
! TGAGTATATGACAGGTATTT+TGG + Chr4:73172512-73172531 None:intergenic 30.0%
! TGTTCTTGTCACATTTTGTT+GGG - Chr4:73170358-73170377 MsG0480022488.01.T01:CDS 30.0%
!! ATGACAGGTATTTTGGATTT+TGG + Chr4:73172505-73172524 None:intergenic 30.0%
AAACTACCTTACAAAAGACG+AGG + Chr4:73172254-73172273 None:intergenic 35.0%
AATTACAGACAACTTGACAG+AGG - Chr4:73170329-73170348 MsG0480022488.01.T01:CDS 35.0%
ACAAACACTCCATGAACAAT+TGG + Chr4:73170879-73170898 None:intergenic 35.0%
ACCAATTAAGGACGAATCAT+TGG + Chr4:73172961-73172980 None:intergenic 35.0%
CATAAGCATAGATGTGTTAC+TGG - Chr4:73170161-73170180 MsG0480022488.01.T01:three_prime_UTR 35.0%
CTATGATACAGGCTATTCAA+AGG - Chr4:73171443-73171462 MsG0480022488.01.T01:CDS 35.0%
GAAACTCAATAACAGTTCGT+TGG - Chr4:73170728-73170747 MsG0480022488.01.T01:intron 35.0%
GCCCAATATACAAGTTAGTT+AGG + Chr4:73170849-73170868 None:intergenic 35.0%
GTATGAGAAGTCATTCTTCA+GGG + Chr4:73172627-73172646 None:intergenic 35.0%
TAAGCCACTGATGAAAATCA+AGG + Chr4:73170484-73170503 None:intergenic 35.0%
TAGATGACTACTTCCTTTCT+CGG - Chr4:73172669-73172688 MsG0480022488.01.T01:intron 35.0%
TCCAATGATTCGTCCTTAAT+TGG - Chr4:73172957-73172976 MsG0480022488.01.T01:CDS 35.0%
TCCAGTAAAACCAACATGTA+GGG + Chr4:73170698-73170717 None:intergenic 35.0%
TCCATGAACAATTGGAGAAA+AGG + Chr4:73170871-73170890 None:intergenic 35.0%
TGGCTTACTATAATATGGGT+AGG - Chr4:73170497-73170516 MsG0480022488.01.T01:intron 35.0%
TGTATGAGAAGTCATTCTTC+AGG + Chr4:73172628-73172647 None:intergenic 35.0%
! CATTGTTTTCCTTAGCTTCA+TGG - Chr4:73172287-73172306 MsG0480022488.01.T01:intron 35.0%
! GAAGTAATTTGTGAAGCAGA+TGG + Chr4:73170095-73170114 None:intergenic 35.0%
! GTATGCTATGCTATTTGATC+AGG - Chr4:73170799-73170818 MsG0480022488.01.T01:intron 35.0%
! GTTCTTGTCACATTTTGTTG+GGG - Chr4:73170359-73170378 MsG0480022488.01.T01:CDS 35.0%
!! GTTTTAAGCTTGAGCTATTC+TGG + Chr4:73172774-73172793 None:intergenic 35.0%
!! TCTGCTCTGAAAAAGTTCTA+TGG - Chr4:73171406-73171425 MsG0480022488.01.T01:CDS 35.0%
!! TGTTTTTACTCACTTTCTGC+AGG - Chr4:73171622-73171641 MsG0480022488.01.T01:CDS 35.0%
!!! AGTATGTTTGGTTTTGTTCC+AGG - Chr4:73171360-73171379 MsG0480022488.01.T01:intron 35.0%
!!! TTAGGTTTTGAATAGGAACC+AGG + Chr4:73170406-73170425 None:intergenic 35.0%
!!! TTTGGTTTTGTTCCAGGTAT+GGG - Chr4:73171366-73171385 MsG0480022488.01.T01:intron 35.0%
!!! TTTTTCTGGTTCCCATTTTC+TGG - Chr4:73170666-73170685 MsG0480022488.01.T01:intron 35.0%
AACTTCAAAACCGGGATTGA+TGG - Chr4:73170542-73170561 MsG0480022488.01.T01:intron 40.0%
ACTTCAAAACCGGGATTGAT+GGG - Chr4:73170543-73170562 MsG0480022488.01.T01:intron 40.0%
ATAACCATTCCCATCAATCC+CGG + Chr4:73170555-73170574 None:intergenic 40.0%
CAAAATGATGAAGGTGGAAC+AGG + Chr4:73171734-73171753 None:intergenic 40.0%
CAATAACAGTTCGTTGGTAC+AGG - Chr4:73170734-73170753 MsG0480022488.01.T01:intron 40.0%
CCAGTAAAACCAACATGTAG+GGG + Chr4:73170697-73170716 None:intergenic 40.0%
CTAGAGCAAAATGATGAAGG+TGG + Chr4:73171740-73171759 None:intergenic 40.0%
CTCACTTTCTGCAGGATATT+TGG - Chr4:73171630-73171649 MsG0480022488.01.T01:CDS 40.0%
CTCCAGTAAAACCAACATGT+AGG + Chr4:73170699-73170718 None:intergenic 40.0%
CTGTCAAAACACAAACACAC+AGG + Chr4:73171974-73171993 None:intergenic 40.0%
CTGTTATTGAGTTTCCACCT+AGG + Chr4:73170723-73170742 None:intergenic 40.0%
GGAGACTGTCATGATTCTTA+TGG - Chr4:73170137-73170156 MsG0480022488.01.T01:three_prime_UTR 40.0%
GGTGGAACAGGAAATGTATT+AGG + Chr4:73171722-73171741 None:intergenic 40.0%
TAATCATGTTGTCCCATACC+TGG + Chr4:73171381-73171400 None:intergenic 40.0%
TGCGTATAAGAATGCTACAC+CGG - Chr4:73172141-73172160 MsG0480022488.01.T01:intron 40.0%
TGTACAAGAACATAGTGGCA+AGG + Chr4:73171267-73171286 None:intergenic 40.0%
! GCCTTTTCTCCAATTGTTCA+TGG - Chr4:73170867-73170886 MsG0480022488.01.T01:intron 40.0%
! TTCATCAGGTTTGTTCTTCC+TGG - Chr4:73170385-73170404 MsG0480022488.01.T01:CDS 40.0%
! TTTCCTCCTCGTCTTTTGTA+AGG - Chr4:73172245-73172264 MsG0480022488.01.T01:intron 40.0%
! TTTTGTTGGGGATGTTCATC+AGG - Chr4:73170371-73170390 MsG0480022488.01.T01:CDS 40.0%
!! TGCTTCTGAGAGTATTAGCT+TGG - Chr4:73172108-73172127 MsG0480022488.01.T01:intron 40.0%
!!! GTTTGGTTTTGTTCCAGGTA+TGG - Chr4:73171365-73171384 MsG0480022488.01.T01:intron 40.0%
!!! TGCTGCTTTTTAGTTGTGAC+TGG - Chr4:73171006-73171025 MsG0480022488.01.T01:intron 40.0%
!!! TGTTTGTGTTTTGACAGCCA+TGG - Chr4:73171977-73171996 MsG0480022488.01.T01:intron 40.0%
AAAACCGGGATTGATGGGAA+TGG - Chr4:73170548-73170567 MsG0480022488.01.T01:intron 45.0%
AGGAAGCTTCCATGAAGCTA+AGG + Chr4:73172299-73172318 None:intergenic 45.0%
ATCCTATAGAGCTTCCATGC+AGG + Chr4:73170970-73170989 None:intergenic 45.0%
CTACCTTACAAAAGACGAGG+AGG + Chr4:73172251-73172270 None:intergenic 45.0%
GAACCTTTAGCTACACATCC+TGG + Chr4:73171216-73171235 None:intergenic 45.0%
GAGCAAGAATGCAATGCATG+AGG + Chr4:73172424-73172443 None:intergenic 45.0%
GATAGGAGAGGGGAAGATTA+TGG - Chr4:73171042-73171061 MsG0480022488.01.T01:intron 45.0%
GCGTATAAGAATGCTACACC+GGG - Chr4:73172142-73172161 MsG0480022488.01.T01:intron 45.0%
GGAAAATCAAGGGAAGTCCA+TGG + Chr4:73171997-73172016 None:intergenic 45.0%
GGTTGCCTATTGTGGAGAAA+AGG - Chr4:73172690-73172709 MsG0480022488.01.T01:intron 45.0%
TAACAGTTCGTTGGTACAGG+AGG - Chr4:73170737-73170756 MsG0480022488.01.T01:intron 45.0%
TACCTGCATGGAAGCTCTAT+AGG - Chr4:73170965-73170984 MsG0480022488.01.T01:CDS 45.0%
TACTTGGGCATCAATGCACA+TGG - Chr4:73172544-73172563 MsG0480022488.01.T01:CDS 45.0%
TAGCCAGGATGTGTAGCTAA+AGG - Chr4:73171210-73171229 MsG0480022488.01.T01:intron 45.0%
TGGTCTTCGGAGTGAAAATG+CGG + Chr4:73172754-73172773 None:intergenic 45.0%
TGTCATATTCTCACCTAGCC+AGG - Chr4:73171195-73171214 MsG0480022488.01.T01:intron 45.0%
TTTAGCTACACATCCTGGCT+AGG + Chr4:73171211-73171230 None:intergenic 45.0%
! CTCTTTTGCTGAGAACCAGT+GGG + Chr4:73172847-73172866 None:intergenic 45.0%
! CTGTTTCTTCCTTAACCCAC+TGG - Chr4:73172829-73172848 MsG0480022488.01.T01:intron 45.0%
! GCTTGAGCTATTCTGGTCTT+CGG + Chr4:73172767-73172786 None:intergenic 45.0%
! TTACCTTCCAAAGTGCTTCC+CGG + Chr4:73172163-73172182 None:intergenic 45.0%
!! GTTGGTCTTGGGTCATATAC+AGG + Chr4:73171599-73171618 None:intergenic 45.0%
!!! CCCCTACATGTTGGTTTTAC+TGG - Chr4:73170694-73170713 MsG0480022488.01.T01:intron 45.0%
!!! GTTGGTTTTACTGGAGACCT+AGG - Chr4:73170703-73170722 MsG0480022488.01.T01:intron 45.0%
ATCACGCAGCATGTCCAGAT+CGG - Chr4:73171690-73171709 MsG0480022488.01.T01:CDS 50.0%
CCACAATAGGCAACCGAGAA+AGG + Chr4:73172685-73172704 None:intergenic 50.0%
CCTTTCTCGGTTGCCTATTG+TGG - Chr4:73172682-73172701 MsG0480022488.01.T01:intron 50.0%
GCCTATTGTGGAGAAAAGGC+TGG - Chr4:73172694-73172713 MsG0480022488.01.T01:intron 50.0%
TAGGGGCTGCACCAGAAAAT+GGG + Chr4:73170680-73170699 None:intergenic 50.0%
TCGGAGTGAAAATGCGGTTG+AGG + Chr4:73172748-73172767 None:intergenic 50.0%
! CCTCTTTTGCTGAGAACCAG+TGG + Chr4:73172848-73172867 None:intergenic 50.0%
! GCCAGCCTTTTCTCCACAAT+AGG + Chr4:73172698-73172717 None:intergenic 50.0%
! GGTTTTACTGGAGACCTAGG+TGG - Chr4:73170706-73170725 MsG0480022488.01.T01:intron 50.0%
!! CCACTGGTTCTCAGCAAAAG+AGG - Chr4:73172845-73172864 MsG0480022488.01.T01:intron 50.0%
!! TGCTGAGAACCAGTGGGTTA+AGG + Chr4:73172841-73172860 None:intergenic 50.0%
GTAGGGGCTGCACCAGAAAA+TGG + Chr4:73170681-73170700 None:intergenic 55.0%
! GAGAAAAGGCTGGCTCAAGG+TGG - Chr4:73172704-73172723 MsG0480022488.01.T01:intron 55.0%
! GTATTAGGCACGCACCGATC+TGG + Chr4:73171707-73171726 None:intergenic 55.0%
! GTGGAGAAAAGGCTGGCTCA+AGG - Chr4:73172701-73172720 MsG0480022488.01.T01:intron 55.0%
!! ACACCGGGAAGCACTTTGGA+AGG - Chr4:73172157-73172176 MsG0480022488.01.T01:intron 55.0%
!! TGCTACACCGGGAAGCACTT+TGG - Chr4:73172153-73172172 MsG0480022488.01.T01:intron 55.0%
CTGGTGCAGCCCCTACATGT+TGG - Chr4:73170685-73170704 MsG0480022488.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 73170086 73173011 73170086 ID=MsG0480022488.01;Name=MsG0480022488.01
Chr4 mRNA 73170086 73173011 73170086 ID=MsG0480022488.01.T01;Parent=MsG0480022488.01;Name=MsG0480022488.01.T01;_AED=0.48;_eAED=0.56;_QI=0|0.57|0.5|1|0.85|0.75|8|221|264
Chr4 exon 73170086 73170425 73170086 ID=MsG0480022488.01.T01:exon:2867;Parent=MsG0480022488.01.T01
Chr4 exon 73170919 73170992 73170919 ID=MsG0480022488.01.T01:exon:2866;Parent=MsG0480022488.01.T01
Chr4 exon 73171386 73171484 73171386 ID=MsG0480022488.01.T01:exon:2865;Parent=MsG0480022488.01.T01
Chr4 exon 73171609 73171715 73171609 ID=MsG0480022488.01.T01:exon:2864;Parent=MsG0480022488.01.T01
Chr4 exon 73172320 73172403 73172320 ID=MsG0480022488.01.T01:exon:2863;Parent=MsG0480022488.01.T01
Chr4 exon 73172508 73172600 73172508 ID=MsG0480022488.01.T01:exon:2862;Parent=MsG0480022488.01.T01
Chr4 exon 73172705 73172760 73172705 ID=MsG0480022488.01.T01:exon:2861;Parent=MsG0480022488.01.T01
Chr4 exon 73172849 73173011 73172849 ID=MsG0480022488.01.T01:exon:2860;Parent=MsG0480022488.01.T01
Chr4 CDS 73172849 73173011 73172849 ID=MsG0480022488.01.T01:cds;Parent=MsG0480022488.01.T01
Chr4 CDS 73172705 73172760 73172705 ID=MsG0480022488.01.T01:cds;Parent=MsG0480022488.01.T01
Chr4 CDS 73172508 73172600 73172508 ID=MsG0480022488.01.T01:cds;Parent=MsG0480022488.01.T01
Chr4 CDS 73172320 73172403 73172320 ID=MsG0480022488.01.T01:cds;Parent=MsG0480022488.01.T01
Chr4 CDS 73171609 73171715 73171609 ID=MsG0480022488.01.T01:cds;Parent=MsG0480022488.01.T01
Chr4 CDS 73171386 73171484 73171386 ID=MsG0480022488.01.T01:cds;Parent=MsG0480022488.01.T01
Chr4 CDS 73170919 73170992 73170919 ID=MsG0480022488.01.T01:cds;Parent=MsG0480022488.01.T01
Chr4 CDS 73170307 73170425 73170307 ID=MsG0480022488.01.T01:cds;Parent=MsG0480022488.01.T01
Chr4 three_prime_UTR 73170086 73170306 73170086 ID=MsG0480022488.01.T01:three_prime_utr;Parent=MsG0480022488.01.T01
Gene Sequence

>MsG0480022488.01.T01

ATGTGTCCATCTGCTTCACAAATTACTTCAACGTTTCTTGGAATTCTTATAGGAGACTGTCATGATTCTTATGGACATAAGCATAGATGTGTTACTGGAGCAATATACAATTATACAATGCAATTGAAATTAGCTAATGCTGATGCTTCATCTGAATTAAAATACAACTTGACAGAGGCACTTATGTTCTTGTCACATTTTGTTGGGGATGTTCATCAGTGGCTTACTATAATATGGGTAGGTAAGTTGAGAAATAAGAATGTTAACTTCAAAACCGGGATTGATGGGAATGGTTATGATATTATTCATTGTCCCCTACATGTTGGTTTTACTGGAGACCTAGGTGGAAACTCAATAACAGTTCGTTGGTACAGGAGGAAAACAAATCTTCATCACGTATGGGACAACATGATTATTGAGTCTGCTCTGAAAAAGTTCTATGGTTCAGATCTTTCAACTATGATACAGGCTATTCAAAGGAATATTAGTGTAATCTCTTCACTACCAACTATTGTTTTTACTCACTTTCTGCAGGATATTTGGTCAAATGATGTATCTATTTGGGAACATTGTGCACACAATCACGCAGCATGTCCAGATCGGTATGCTTCTGAGAGTATTAGCTTGGCATGCAAGTTTGCGTATAAGAATGCTACACCGGGAAGCACTTTGGAAGATGACTACTTCCTTTCTCGGTTGCCTATTGTGGAGAAAAGGCTGGCTCAAGGTGGTGTGCGACTTGCAGCTATCCTCAACCGCATTTTCACTCCGAAGACCAGAATAGCTCAAGCTTAA
Protein sequence

>MsG0480022488.01.T01

MCPSASQITSTFLGILIGDCHDSYGHKHRCVTGAIYNYTMQLKLANADASSELKYNLTEALMFLSHFVGDVHQWLTIIWVGKLRNKNVNFKTGIDGNGYDIIHCPLHVGFTGDLGGNSITVRWYRRKTNLHHVWDNMIIESALKKFYGSDLSTMIQAIQRNISVISSLPTIVFTHFLQDIWSNDVSIWEHCAHNHAACPDRYASESISLACKFAYKNATPGSTLEDDYFLSRLPIVEKRLAQGGVRLAAILNRIFTPKTRIAQA*