AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046119.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046119.01.T01 MTR_4g100350 98.000 300 6 0 50 349 1 300 0.0 602
MsG0880046119.01.T01 MTR_3g085700 29.412 255 171 3 101 347 17 270 2.85e-27 108
MsG0880046119.01.T01 MTR_4g120130 34.536 194 122 4 97 288 12 202 8.56e-25 105
MsG0880046119.01.T01 MTR_4g122220 28.049 246 171 3 102 345 15 256 3.39e-23 97.4
MsG0880046119.01.T01 MTR_8g064990 27.309 249 175 4 102 347 3 248 1.54e-21 92.8
MsG0880046119.01.T01 MTR_8g064990 25.170 294 212 5 59 347 32 322 1.04e-20 91.7
MsG0880046119.01.T01 MTR_2027s0010 28.509 228 150 4 106 325 13 235 1.21e-20 90.1
MsG0880046119.01.T01 MTR_0837s0020 44.762 105 55 1 151 255 206 307 4.22e-19 89.4
MsG0880046119.01.T01 MTR_6g087670 35.821 201 120 5 91 285 4 201 2.73e-17 83.6
MsG0880046119.01.T01 MTR_2g436300 33.816 207 131 5 97 300 10 213 8.13e-17 82.0
MsG0880046119.01.T01 MTR_8g010580 26.163 172 119 4 106 272 23 191 1.61e-12 68.2
MsG0880046119.01.T01 MTR_8g010580 26.163 172 119 4 106 272 23 191 1.69e-12 67.8
MsG0880046119.01.T01 MTR_1535s0020 33.913 115 74 2 99 212 14 127 1.89e-12 64.3
MsG0880046119.01.T01 MTR_8g010580 26.163 172 119 4 106 272 23 191 2.00e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046119.01.T01 AT4G16800 69.597 273 83 0 76 348 28 300 9.70e-141 401
MsG0880046119.01.T01 AT5G43280 29.278 263 168 4 99 346 16 275 2.94e-28 111
MsG0880046119.01.T01 AT4G16210 30.667 225 140 6 102 320 18 232 2.35e-24 100
MsG0880046119.01.T01 AT5G43280 30.811 185 111 3 99 269 16 197 5.49e-23 95.9
MsG0880046119.01.T01 AT1G60550 26.690 281 199 5 71 347 54 331 3.18e-22 96.3
MsG0880046119.01.T01 AT3G06860 37.245 196 115 5 97 288 13 204 3.51e-17 83.2
MsG0880046119.01.T01 AT4G29010 33.505 194 123 4 100 290 13 203 4.41e-16 80.1
MsG0880046119.01.T01 AT4G31810 28.488 172 116 5 108 274 56 225 5.71e-14 72.8
MsG0880046119.01.T01 AT3G24360 22.846 267 193 6 82 340 38 299 1.27e-12 68.9
MsG0880046119.01.T01 AT2G30660 24.194 186 129 5 96 274 8 188 4.36e-12 67.0
MsG0880046119.01.T01 AT5G65940 25.128 195 133 7 106 293 22 210 1.18e-11 65.5
MsG0880046119.01.T01 AT5G65940 25.128 195 133 7 106 293 22 210 1.31e-11 65.5
MsG0880046119.01.T01 AT5G65940 24.878 205 141 7 96 293 12 210 1.49e-11 65.5
MsG0880046119.01.T01 AT5G65940 24.878 205 141 7 96 293 12 210 1.49e-11 65.5

Find 91 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCCACATTGACATTTC+TGG 0.129778 8:+69285581 MsG0880046119.01.T01:CDS
TTTACTGGTCGAAAGATTAA+TGG 0.241785 8:+69286641 MsG0880046119.01.T01:CDS
ATGGGTTTGGTGCTGATGAT+AGG 0.313045 8:-69284685 None:intergenic
TGGCGAGTGAAAGGAATATT+TGG 0.316955 8:+69287870 MsG0880046119.01.T01:exon
CAAGCCTTCCAGTCGATCTT+TGG 0.317010 8:-69287812 None:intergenic
GATGAAATTCATTGCTTCAT+TGG 0.326255 8:-69288109 None:intergenic
AGTCCAAGATAAGTGTTCTA+TGG 0.332255 8:-69284704 None:intergenic
ATGAAATTCATTGCTTCATT+GGG 0.334785 8:-69288108 None:intergenic
TGTACCCACTATTGCTGTTA+TGG 0.336211 8:+69285899 MsG0880046119.01.T01:CDS
TCTAACATCAGCTTTGGTTT+TGG 0.336452 8:+69287759 MsG0880046119.01.T01:CDS
ACTTAAAATTAAAGTCCATT+TGG 0.343164 8:+69288282 MsG0880046119.01.T01:three_prime_UTR
TTGATCCGCAGTTTAGTTCC+CGG 0.347590 8:+69285067 MsG0880046119.01.T01:CDS
TTAGCCATCCTTACTGCTAC+AGG 0.361179 8:-69287706 None:intergenic
CGTAGGAGCAAATGCTTTGA+TGG 0.365191 8:+69286100 MsG0880046119.01.T01:intron
AATGAATTTCATCTTTCATA+AGG 0.378832 8:+69288119 MsG0880046119.01.T01:three_prime_UTR
GTCAATTACTGTGTTGCTGC+TGG 0.380310 8:+69287076 MsG0880046119.01.T01:CDS
GACTGATCTAACATCAGCTT+TGG 0.400861 8:+69287753 MsG0880046119.01.T01:CDS
TCTTGGTGGTGGACTTGAAA+TGG 0.419511 8:+69285932 MsG0880046119.01.T01:CDS
GGAAGAAGATTGCTATGATC+AGG 0.420947 8:+69287780 MsG0880046119.01.T01:CDS
AACCCATAGAACACTTATCT+TGG 0.425465 8:+69284701 MsG0880046119.01.T01:CDS
TCCTTCCATAACAGCAATAG+TGG 0.426484 8:-69285904 None:intergenic
AGATAAGTGTTCTATGGGTT+TGG 0.434008 8:-69284698 None:intergenic
CAGGCAATAATTAATCTGTC+TGG 0.435405 8:+69288241 MsG0880046119.01.T01:three_prime_UTR
TTGTGCTGGGGCTGATCTAA+AGG 0.436607 8:+69285096 MsG0880046119.01.T01:CDS
TTGATGGGTTTGCCAGAGAC+AGG 0.439262 8:+69286116 MsG0880046119.01.T01:CDS
AATCTCACTGGCTCAGATTC+CGG 0.440580 8:+69284756 MsG0880046119.01.T01:CDS
AATTTCAAGTGCCTTGGAAT+GGG 0.444417 8:-69287104 None:intergenic
TGGTGGACTTGAAATGGCTT+TGG 0.450397 8:+69285938 MsG0880046119.01.T01:CDS
TGGCATTGAGGCGCTATCAA+TGG 0.451098 8:+69286661 MsG0880046119.01.T01:CDS
CCGAGCAATTTCAAGTGCCT+TGG 0.455064 8:-69287110 None:intergenic
AGGGATTATTGAAGTTAGCT+TGG 0.460766 8:+69284946 MsG0880046119.01.T01:intron
CCAAGGCACTTGAAATTGCT+CGG 0.465476 8:+69287110 MsG0880046119.01.T01:CDS
GGCATTGAGGCGCTATCAAT+GGG 0.465523 8:+69286662 MsG0880046119.01.T01:CDS
TGCTCGGGATATCAATCAAA+AGG 0.472234 8:+69287126 MsG0880046119.01.T01:CDS
CAGACAGATTAATTATTGCC+TGG 0.473142 8:-69288240 None:intergenic
CAATTTCAAGTGCCTTGGAA+TGG 0.474872 8:-69287105 None:intergenic
AGAGGATTATTTGCAGCAAA+AGG 0.477927 8:+69284498 MsG0880046119.01.T01:CDS
ACAGGACTTGCTATAATCCC+TGG 0.491046 8:+69286134 MsG0880046119.01.T01:CDS
TGGGTTTGGTGCTGATGATA+GGG 0.491563 8:-69284684 None:intergenic
TGATCCGCAGTTTAGTTCCC+GGG 0.494453 8:+69285068 MsG0880046119.01.T01:CDS
TTTCACTCGCCAGTGTACCT+TGG 0.495193 8:-69287859 None:intergenic
GTCCAAGATAAGTGTTCTAT+GGG 0.506385 8:-69284703 None:intergenic
AATAGGGCCCTGTAGCAGTA+AGG 0.507132 8:+69287698 MsG0880046119.01.T01:intron
CAAGGCACTTGAAATTGCTC+GGG 0.509246 8:+69287111 MsG0880046119.01.T01:CDS
TAGCCATCCTTACTGCTACA+GGG 0.516527 8:-69287705 None:intergenic
CAAAGATCGACTGGAAGGCT+TGG 0.520217 8:+69287813 MsG0880046119.01.T01:CDS
GAAGGAGTAGCTCTTGGTGG+TGG 0.527355 8:+69285921 MsG0880046119.01.T01:CDS
GTCAAGCTTCACAATCTCAC+TGG 0.527894 8:+69284744 MsG0880046119.01.T01:CDS
ATTATAGCAAGTCCTGTCTC+TGG 0.532014 8:-69286128 None:intergenic
AAGAGCTATTAACGAGGGAG+TGG 0.534208 8:+69287729 MsG0880046119.01.T01:CDS
AAGGTACACTGGCGAGTGAA+AGG 0.544844 8:+69287861 MsG0880046119.01.T01:exon
GCATGTGATATTCGAATATG+TGG 0.548943 8:+69285960 MsG0880046119.01.T01:CDS
ACAGTTTCTCATCTTTGTAG+AGG 0.554767 8:-69288003 None:intergenic
ACAGTTTCTCATCTTTGTAG+AGG 0.554767 8:-69288040 None:intergenic
AACACAGCGACTACCTAGAT+TGG 0.556542 8:+69286589 MsG0880046119.01.T01:CDS
CTTGTCATGCACAGGGCAGG+TGG 0.558617 8:+69286566 MsG0880046119.01.T01:intron
GTTGAATACCAAAGATCGAC+TGG 0.559419 8:+69287804 MsG0880046119.01.T01:CDS
GTAGGAGCAAATGCTTTGAT+GGG 0.562937 8:+69286101 MsG0880046119.01.T01:intron
GTTATGGAAGGAGTAGCTCT+TGG 0.563981 8:+69285915 MsG0880046119.01.T01:CDS
GGTAGGAAAATCAGTAGCAA+AGG 0.575856 8:+69286610 MsG0880046119.01.T01:CDS
CACTCATTATCTATGTGTAG+AGG 0.577406 8:+69284480 MsG0880046119.01.T01:CDS
ATGGAAGGAGTAGCTCTTGG+TGG 0.578725 8:+69285918 MsG0880046119.01.T01:CDS
ATCACAGGAACGCAGGACCA+TGG 0.578834 8:+69285524 MsG0880046119.01.T01:intron
TGGCTGCATTTGCTGAAAAG+CGG 0.579686 8:+69287833 MsG0880046119.01.T01:CDS
CTTAGCCTCGGATTGATCCA+TGG 0.588003 8:-69285541 None:intergenic
CTCAAATTGCATGATTGTAG+AGG 0.589256 8:-69288075 None:intergenic
TGCTGGTGAAGCCCATTCCA+AGG 0.590084 8:+69287093 MsG0880046119.01.T01:CDS
CAGGACTTGCTATAATCCCT+GGG 0.590587 8:+69286135 MsG0880046119.01.T01:CDS
CCCACTATTGCTGTTATGGA+AGG 0.594271 8:+69285903 MsG0880046119.01.T01:CDS
GCCCCAGCACAAAATACCCC+GGG 0.600202 8:-69285085 None:intergenic
AGCCCCAGCACAAAATACCC+CGG 0.602391 8:-69285086 None:intergenic
CAGCGACTACCTAGATTGGT+AGG 0.605465 8:+69286593 MsG0880046119.01.T01:CDS
TTCCACATTGACATTTCTGG+AGG 0.607707 8:+69285584 MsG0880046119.01.T01:CDS
GGGCCCTGTAGCAGTAAGGA+TGG 0.608076 8:+69287702 MsG0880046119.01.T01:intron
AAGCGGAAACCAAGGTACAC+TGG 0.609624 8:+69287850 MsG0880046119.01.T01:CDS
AATACCAAAGATCGACTGGA+AGG 0.626742 8:+69287808 MsG0880046119.01.T01:CDS
TTGCTGAAAAGCGGAAACCA+AGG 0.638227 8:+69287842 MsG0880046119.01.T01:CDS
ATCTTTGTAGAGGCAAAGAG+TGG 0.640644 8:-69287993 None:intergenic
ATCTTTGTAGAGGCAAAGAG+TGG 0.640644 8:-69288030 None:intergenic
TCGAAAGATTAATGGCATTG+AGG 0.647855 8:+69286649 MsG0880046119.01.T01:CDS
TTATCTGATCACAGGAACGC+AGG 0.649519 8:+69285517 MsG0880046119.01.T01:intron
CCTTCCATAACAGCAATAGT+GGG 0.670324 8:-69285903 None:intergenic
GATCCGCAGTTTAGTTCCCG+GGG 0.677040 8:+69285069 MsG0880046119.01.T01:CDS
GCTAAAAGAGCTATTAACGA+GGG 0.677278 8:+69287724 MsG0880046119.01.T01:CDS
ATGATTGTAGAGGCAAAGAG+TGG 0.681033 8:-69288065 None:intergenic
AAGTGATGTATAGAAGCTTG+AGG 0.682481 8:+69287948 MsG0880046119.01.T01:three_prime_UTR
CAGGACCATGGATCAATCCG+AGG 0.692671 8:+69285536 MsG0880046119.01.T01:CDS
GGCTAAAAGAGCTATTAACG+AGG 0.701626 8:+69287723 MsG0880046119.01.T01:CDS
AACCTCCAGAAATGTCAATG+TGG 0.701845 8:-69285586 None:intergenic
ATACCCCGGGAACTAAACTG+CGG 0.727381 8:-69285072 None:intergenic
ATAGGGAAAGAGATGCTGCG+TGG 0.727860 8:+69284992 MsG0880046119.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCTAATTAAAAGTAATTT+CGG - Chr8:69287465-69287484 None:intergenic 10.0%
!!! AAAAAATATAGTTTTTGTTA+TGG - Chr8:69286928-69286947 None:intergenic 10.0%
!!! AAGAATTTAGTAATTTTTTT+GGG - Chr8:69286955-69286974 None:intergenic 10.0%
!!! CTTTTAATTAGAATATATTT+TGG + Chr8:69287471-69287490 MsG0880046119.01.T01:intron 10.0%
!! AAAACATTAATTCAAACTAA+TGG + Chr8:69285484-69285503 MsG0880046119.01.T01:intron 15.0%
!! AAAATAAAAAAATACTATGC+TGG - Chr8:69285863-69285882 None:intergenic 15.0%
!! ACTCTATGAAAATTAATTAT+AGG - Chr8:69287541-69287560 None:intergenic 15.0%
!!! AAAATTTTGAATCTTTACAT+TGG - Chr8:69288174-69288193 None:intergenic 15.0%
!!! ATCTACCTATTATTTTATTT+TGG - Chr8:69286227-69286246 None:intergenic 15.0%
!!! CAAGAATTTAGTAATTTTTT+TGG - Chr8:69286956-69286975 None:intergenic 15.0%
!!! TGTCAAATTTTCAATTAAAA+AGG - Chr8:69287623-69287642 None:intergenic 15.0%
!!! TTGATTTTTCATTTTTCAAA+GGG + Chr8:69287282-69287301 MsG0880046119.01.T01:intron 15.0%
!! AAATAAACTGAAATGCTTAA+AGG + Chr8:69285227-69285246 MsG0880046119.01.T01:intron 20.0%
!! AATGAATTTCATCTTTCATA+AGG + Chr8:69288119-69288138 MsG0880046119.01.T01:three_prime_UTR 20.0%
!! ACATACTTTAATGATTCAAT+TGG + Chr8:69287385-69287404 MsG0880046119.01.T01:intron 20.0%
!! AGCTACCAAAATAAAATAAT+AGG + Chr8:69286219-69286238 MsG0880046119.01.T01:intron 20.0%
!! ATTACAAGTCCATATATAAA+TGG + Chr8:69287234-69287253 MsG0880046119.01.T01:intron 20.0%
!! ATTTATATATGGACTTGTAA+TGG - Chr8:69287235-69287254 None:intergenic 20.0%
!! TATAAAGAGAAAATACTTGT+AGG + Chr8:69287572-69287591 MsG0880046119.01.T01:intron 20.0%
!! TTATGACATTTAGAAATGTA+GGG + Chr8:69287194-69287213 MsG0880046119.01.T01:intron 20.0%
!! TTTATGACATTTAGAAATGT+AGG + Chr8:69287193-69287212 MsG0880046119.01.T01:intron 20.0%
!!! AAAATTTGACATTTGAGATA+AGG + Chr8:69287632-69287651 MsG0880046119.01.T01:intron 20.0%
!!! AAATATAGTTTTTGTTATGG+TGG - Chr8:69286925-69286944 None:intergenic 20.0%
!!! AGTTAGAGTAAACTTTTAAT+AGG + Chr8:69287681-69287700 MsG0880046119.01.T01:intron 20.0%
!!! GTTAGAGTAAACTTTTAATA+GGG + Chr8:69287682-69287701 MsG0880046119.01.T01:intron 20.0%
!!! GTTGATTTTTCATTTTTCAA+AGG + Chr8:69287281-69287300 MsG0880046119.01.T01:intron 20.0%
!!! TAAATTTTCCAGATACATAA+TGG + Chr8:69286248-69286267 MsG0880046119.01.T01:intron 20.0%
!!! TGATTTTTCATTTTTCAAAG+GGG + Chr8:69287283-69287302 MsG0880046119.01.T01:intron 20.0%
!!! TTAATTTTCATAGAGTTGTT+TGG + Chr8:69287545-69287564 MsG0880046119.01.T01:intron 20.0%
!!! TTATTTCTCTTTTCTTTTGA+TGG + Chr8:69288192-69288211 MsG0880046119.01.T01:three_prime_UTR 20.0%
!!! TTGAATTTTGTTTGTTTACA+GGG + Chr8:69284927-69284946 MsG0880046119.01.T01:intron 20.0%
!!! TTTGAATTTTGTTTGTTTAC+AGG + Chr8:69284926-69284945 MsG0880046119.01.T01:intron 20.0%
! AATTCGTTCAAAATCTACTA+CGG - Chr8:69285343-69285362 None:intergenic 25.0%
! ATAAATAACCAACTTGTGTT+TGG + Chr8:69286479-69286498 MsG0880046119.01.T01:intron 25.0%
! ATGAAATTCATTGCTTCATT+GGG - Chr8:69288111-69288130 None:intergenic 25.0%
! TCAACTAATTCTAACAAAAC+TGG - Chr8:69284830-69284849 None:intergenic 25.0%
! TTGTACTAAATTGTGTATCA+TGG - Chr8:69285375-69285394 None:intergenic 25.0%
!! AATTGCATCAATTTGTTTGT+AGG + Chr8:69286008-69286027 MsG0880046119.01.T01:intron 25.0%
!! AATTTGTTTGTAGGATAGTT+TGG + Chr8:69286017-69286036 MsG0880046119.01.T01:intron 25.0%
!! ATGGTTTCGAAATTTTACTT+CGG + Chr8:69288211-69288230 MsG0880046119.01.T01:three_prime_UTR 25.0%
!!! CTACTATTGTTTCTTTTTGT+GGG + Chr8:69285734-69285753 MsG0880046119.01.T01:intron 25.0%
!!! GCAAAGGATATTATTTTTAC+TGG + Chr8:69286626-69286645 MsG0880046119.01.T01:CDS 25.0%
!!! TACTATTGTTTCTTTTTGTG+GGG + Chr8:69285735-69285754 MsG0880046119.01.T01:intron 25.0%
AAAATAGAGAGAGAAGTTAC+CGG - Chr8:69284778-69284797 None:intergenic 30.0%
AAACCAGTGTTGTCAAATAA+CGG + Chr8:69285302-69285321 MsG0880046119.01.T01:intron 30.0%
AATTTGTAAACATCATACCC+AGG - Chr8:69286155-69286174 None:intergenic 30.0%
ACACAGCAAATGAATATGAA+AGG - Chr8:69285791-69285810 None:intergenic 30.0%
ATGACGACAAGAATCTATTA+CGG - Chr8:69285280-69285299 None:intergenic 30.0%
ATTCACAAAAAACTTAGCCT+CGG - Chr8:69285556-69285575 None:intergenic 30.0%
ATTTGTAAACATCATACCCA+GGG - Chr8:69286154-69286173 None:intergenic 30.0%
CTGAAGCTAAAAATGCTATA+GGG + Chr8:69284975-69284994 MsG0880046119.01.T01:CDS 30.0%
GATGAAATTCATTGCTTCAT+TGG - Chr8:69288112-69288131 None:intergenic 30.0%
TATACTCTCCATTATGTATC+TGG - Chr8:69286259-69286278 None:intergenic 30.0%
TGATCACTATGTAAAGTGAT+CGG + Chr8:69284888-69284907 MsG0880046119.01.T01:intron 30.0%
TTTACTGGTCGAAAGATTAA+TGG + Chr8:69286641-69286660 MsG0880046119.01.T01:CDS 30.0%
! ATTCTTGTTTATCTGATCAC+AGG + Chr8:69285509-69285528 MsG0880046119.01.T01:intron 30.0%
! ATTTTACTTCGGATATTTCC+AGG + Chr8:69288222-69288241 MsG0880046119.01.T01:three_prime_UTR 30.0%
! GGACTACTTTATTTGTGAAA+CGG - Chr8:69286984-69287003 None:intergenic 30.0%
!! GCTACTATTGTTTCTTTTTG+TGG + Chr8:69285733-69285752 MsG0880046119.01.T01:intron 30.0%
!! TACAAAGTGTTGTCAAATAG+CGG + Chr8:69285390-69285409 MsG0880046119.01.T01:intron 30.0%
!! TCACTTCTTCAATGCTTTTT+CGG - Chr8:69284551-69284570 None:intergenic 30.0%
!!! CTTTTTGTTTGAGTTGAGAA+TGG + Chr8:69286395-69286414 MsG0880046119.01.T01:intron 30.0%
!!! TGTTTCTTTTTTCATTGCGT+AGG + Chr8:69286083-69286102 MsG0880046119.01.T01:intron 30.0%
AACCCATAGAACACTTATCT+TGG + Chr8:69284701-69284720 MsG0880046119.01.T01:CDS 35.0%
AAGTGATGTATAGAAGCTTG+AGG + Chr8:69287948-69287967 MsG0880046119.01.T01:three_prime_UTR 35.0%
ACAACTTTCCAAACACAAGT+TGG - Chr8:69286490-69286509 None:intergenic 35.0%
ACAGTTTCTCATCTTTGTAG+AGG - Chr8:69288006-69288025 None:intergenic 35.0%
AGAGGATTATTTGCAGCAAA+AGG + Chr8:69284498-69284517 MsG0880046119.01.T01:CDS 35.0%
AGATAAGTGTTCTATGGGTT+TGG - Chr8:69284701-69284720 None:intergenic 35.0%
AGGGATTATTGAAGTTAGCT+TGG + Chr8:69284946-69284965 MsG0880046119.01.T01:intron 35.0%
AGTCCAAGATAAGTGTTCTA+TGG - Chr8:69284707-69284726 None:intergenic 35.0%
ATACTCTATTGAGTCTTGAC+TGG - Chr8:69287439-69287458 None:intergenic 35.0%
ATCACTATGTAAAGTGATCG+GGG + Chr8:69284890-69284909 MsG0880046119.01.T01:intron 35.0%
ATGAAGCGCAAAGATATAAG+AGG + Chr8:69286736-69286755 MsG0880046119.01.T01:intron 35.0%
ATGTAATCTTGTCATGCACA+GGG + Chr8:69286559-69286578 MsG0880046119.01.T01:intron 35.0%
CACTCATTATCTATGTGTAG+AGG + Chr8:69284480-69284499 MsG0880046119.01.T01:CDS 35.0%
CAGACAGATTAATTATTGCC+TGG - Chr8:69288243-69288262 None:intergenic 35.0%
CAGGCAATAATTAATCTGTC+TGG + Chr8:69288241-69288260 MsG0880046119.01.T01:three_prime_UTR 35.0%
CATTTAGAAATGTAGGGATC+AGG + Chr8:69287200-69287219 MsG0880046119.01.T01:intron 35.0%
CCTGAAGCTAAAAATGCTAT+AGG + Chr8:69284974-69284993 MsG0880046119.01.T01:CDS 35.0%
CTATCAATGGGTATGTTGAT+TGG + Chr8:69286674-69286693 MsG0880046119.01.T01:intron 35.0%
CTCAAATTGCATGATTGTAG+AGG - Chr8:69288078-69288097 None:intergenic 35.0%
GATCACTATGTAAAGTGATC+GGG + Chr8:69284889-69284908 MsG0880046119.01.T01:intron 35.0%
GCATGTGATATTCGAATATG+TGG + Chr8:69285960-69285979 MsG0880046119.01.T01:CDS 35.0%
GCTAAAAGAGCTATTAACGA+GGG + Chr8:69287724-69287743 MsG0880046119.01.T01:CDS 35.0%
GTCCAAGATAAGTGTTCTAT+GGG - Chr8:69284706-69284725 None:intergenic 35.0%
TCAAACAAAAAGCAAGTCAC+TGG - Chr8:69286387-69286406 None:intergenic 35.0%
TCGAAAGATTAATGGCATTG+AGG + Chr8:69286649-69286668 MsG0880046119.01.T01:CDS 35.0%
TGGTTATTTATGCTCATTGC+AGG - Chr8:69286470-69286489 None:intergenic 35.0%
TTGTCAAATAGCGGTTATAG+TGG + Chr8:69285399-69285418 MsG0880046119.01.T01:intron 35.0%
! AATTTCAAGTGCCTTGGAAT+GGG - Chr8:69287107-69287126 None:intergenic 35.0%
! CAGTCACTGCCATTTATATA+TGG - Chr8:69287246-69287265 None:intergenic 35.0%
! TTGACATTTGAGATAAGGCA+TGG + Chr8:69287637-69287656 MsG0880046119.01.T01:intron 35.0%
!! ACTGATTTTCCTACCAATCT+AGG - Chr8:69286605-69286624 None:intergenic 35.0%
!! ATTGTTTCTTTTTGTGGGGA+AGG + Chr8:69285739-69285758 MsG0880046119.01.T01:intron 35.0%
!! TCTAACATCAGCTTTGGTTT+TGG + Chr8:69287759-69287778 MsG0880046119.01.T01:CDS 35.0%
!! TTGTTTCTTTTTGTGGGGAA+GGG + Chr8:69285740-69285759 MsG0880046119.01.T01:intron 35.0%
!!! CCTATAGCATTTTTAGCTTC+AGG - Chr8:69284977-69284996 None:intergenic 35.0%
!!! GGATTTTTTCTTTGCTTTCC+TGG - Chr8:69286904-69286923 None:intergenic 35.0%
!!! TTTCGAAGTTTTGAAGTAGG+AGG - Chr8:69284664-69284683 None:intergenic 35.0%
AAAGGGGTCTATTGTGAAAG+AGG + Chr8:69287299-69287318 MsG0880046119.01.T01:intron 40.0%
AACCTCCAGAAATGTCAATG+TGG - Chr8:69285589-69285608 None:intergenic 40.0%
AATACCAAAGATCGACTGGA+AGG + Chr8:69287808-69287827 MsG0880046119.01.T01:CDS 40.0%
ACTGGCATATTCAGATTACC+AGG - Chr8:69287421-69287440 None:intergenic 40.0%
ATCTTTGTAGAGGCAAAGAG+TGG - Chr8:69287996-69288015 None:intergenic 40.0%
ATGATTGTAGAGGCAAAGAG+TGG - Chr8:69288068-69288087 None:intergenic 40.0%
ATTATAGCAAGTCCTGTCTC+TGG - Chr8:69286131-69286150 None:intergenic 40.0%
CAAACTTCCATTGTCTTGGA+GGG + Chr8:69286826-69286845 MsG0880046119.01.T01:intron 40.0%
CATGTAATCTTGTCATGCAC+AGG + Chr8:69286558-69286577 MsG0880046119.01.T01:intron 40.0%
CCTTCCATAACAGCAATAGT+GGG - Chr8:69285906-69285925 None:intergenic 40.0%
CTGGCATATTCAGATTACCA+GGG - Chr8:69287420-69287439 None:intergenic 40.0%
CTGTCAAACTTCCATTGTCT+TGG + Chr8:69286822-69286841 MsG0880046119.01.T01:intron 40.0%
GAAAGATCATATGTTCTCGC+AGG + Chr8:69287049-69287068 MsG0880046119.01.T01:intron 40.0%
GACTGATCTAACATCAGCTT+TGG + Chr8:69287753-69287772 MsG0880046119.01.T01:CDS 40.0%
GGAAGAAGATTGCTATGATC+AGG + Chr8:69287780-69287799 MsG0880046119.01.T01:CDS 40.0%
GGCTAAAAGAGCTATTAACG+AGG + Chr8:69287723-69287742 MsG0880046119.01.T01:CDS 40.0%
GGTAGGAAAATCAGTAGCAA+AGG + Chr8:69286610-69286629 MsG0880046119.01.T01:CDS 40.0%
GTAGGAGCAAATGCTTTGAT+GGG + Chr8:69286101-69286120 MsG0880046119.01.T01:intron 40.0%
GTTATAGCATTACAGCGTTG+TGG + Chr8:69285423-69285442 MsG0880046119.01.T01:intron 40.0%
GTTGAATACCAAAGATCGAC+TGG + Chr8:69287804-69287823 MsG0880046119.01.T01:CDS 40.0%
TATGCTCATTGCAGGCTTTA+GGG - Chr8:69286462-69286481 None:intergenic 40.0%
TCAAACTTCCATTGTCTTGG+AGG + Chr8:69286825-69286844 MsG0880046119.01.T01:intron 40.0%
TCCTTCCATAACAGCAATAG+TGG - Chr8:69285907-69285926 None:intergenic 40.0%
TCGTTCCACATTGACATTTC+TGG + Chr8:69285581-69285600 MsG0880046119.01.T01:CDS 40.0%
TGCTCGGGATATCAATCAAA+AGG + Chr8:69287126-69287145 MsG0880046119.01.T01:CDS 40.0%
TGGCGAGTGAAAGGAATATT+TGG + Chr8:69287870-69287889 MsG0880046119.01.T01:exon 40.0%
TTATGCTCATTGCAGGCTTT+AGG - Chr8:69286463-69286482 None:intergenic 40.0%
! AATGTAGGGATCAGGCTTTT+TGG + Chr8:69287208-69287227 MsG0880046119.01.T01:intron 40.0%
! ATGTAGGGATCAGGCTTTTT+GGG + Chr8:69287209-69287228 MsG0880046119.01.T01:intron 40.0%
! CAATTTCAAGTGCCTTGGAA+TGG - Chr8:69287108-69287127 None:intergenic 40.0%
! GATGCTTAGCGTAATTTGTC+AGG + Chr8:69285170-69285189 MsG0880046119.01.T01:intron 40.0%
! TGTACCCACTATTGCTGTTA+TGG + Chr8:69285899-69285918 MsG0880046119.01.T01:CDS 40.0%
! TGTTTCTTTTTGTGGGGAAG+GGG + Chr8:69285741-69285760 MsG0880046119.01.T01:intron 40.0%
! TTCCACATTGACATTTCTGG+AGG + Chr8:69285584-69285603 MsG0880046119.01.T01:CDS 40.0%
!! ACTATGCTGGTTTCAAAGCT+CGG - Chr8:69285850-69285869 None:intergenic 40.0%
!! GTGTCGACTGTCAACAAAAT+GGG - Chr8:69285828-69285847 None:intergenic 40.0%
!!! GGGTTTCGAAGTTTTGAAGT+AGG - Chr8:69284667-69284686 None:intergenic 40.0%
AACACAGCGACTACCTAGAT+TGG + Chr8:69286589-69286608 MsG0880046119.01.T01:CDS 45.0%
AAGAGCTATTAACGAGGGAG+TGG + Chr8:69287729-69287748 MsG0880046119.01.T01:CDS 45.0%
AAGTGAACCCTCCAAGACAA+TGG - Chr8:69286836-69286855 None:intergenic 45.0%
ATTGTCTTGGAGGGTTCACT+TGG + Chr8:69286835-69286854 MsG0880046119.01.T01:intron 45.0%
CGTAGGAGCAAATGCTTTGA+TGG + Chr8:69286100-69286119 MsG0880046119.01.T01:intron 45.0%
GGGAAAAGCAGAGAGATGAT+TGG - Chr8:69287005-69287024 None:intergenic 45.0%
GTCAAGCTTCACAATCTCAC+TGG + Chr8:69284744-69284763 MsG0880046119.01.T01:CDS 45.0%
GTCATCTCATGTTGAACTCC+AGG + Chr8:69286883-69286902 MsG0880046119.01.T01:intron 45.0%
GTTATGGAAGGAGTAGCTCT+TGG + Chr8:69285915-69285934 MsG0880046119.01.T01:CDS 45.0%
TAAGCATCATCGCCGTTAGT+CGG - Chr8:69287026-69287045 None:intergenic 45.0%
TAGCCATCCTTACTGCTACA+GGG - Chr8:69287708-69287727 None:intergenic 45.0%
TTAGCCATCCTTACTGCTAC+AGG - Chr8:69287709-69287728 None:intergenic 45.0%
TTATCTGATCACAGGAACGC+AGG + Chr8:69285517-69285536 MsG0880046119.01.T01:intron 45.0%
TTGCTGAAAAGCGGAAACCA+AGG + Chr8:69287842-69287861 MsG0880046119.01.T01:CDS 45.0%
! ATGCTCATTGCAGGCTTTAG+GGG - Chr8:69286461-69286480 None:intergenic 45.0%
! CAAGGCACTTGAAATTGCTC+GGG + Chr8:69287111-69287130 MsG0880046119.01.T01:CDS 45.0%
! CCAAGGCACTTGAAATTGCT+CGG + Chr8:69287110-69287129 MsG0880046119.01.T01:CDS 45.0%
! CCCACTATTGCTGTTATGGA+AGG + Chr8:69285903-69285922 MsG0880046119.01.T01:CDS 45.0%
! GTCAATTACTGTGTTGCTGC+TGG + Chr8:69287076-69287095 MsG0880046119.01.T01:CDS 45.0%
! GTGCCGTTATTTGACAACAC+TGG - Chr8:69285308-69285327 None:intergenic 45.0%
! TGGCTGCATTTGCTGAAAAG+CGG + Chr8:69287833-69287852 MsG0880046119.01.T01:CDS 45.0%
! TTGATCCGCAGTTTAGTTCC+CGG + Chr8:69285067-69285086 MsG0880046119.01.T01:CDS 45.0%
!! AATCTCACTGGCTCAGATTC+CGG + Chr8:69284756-69284775 MsG0880046119.01.T01:CDS 45.0%
!! ACAGGACTTGCTATAATCCC+TGG + Chr8:69286134-69286153 MsG0880046119.01.T01:CDS 45.0%
!! ATGGGTTTGGTGCTGATGAT+AGG - Chr8:69284688-69284707 None:intergenic 45.0%
!! CAGGACTTGCTATAATCCCT+GGG + Chr8:69286135-69286154 MsG0880046119.01.T01:CDS 45.0%
!! GGTGTCGACTGTCAACAAAA+TGG - Chr8:69285829-69285848 None:intergenic 45.0%
!! TCTCTGCTTTTCCCGACTAA+CGG + Chr8:69287011-69287030 MsG0880046119.01.T01:intron 45.0%
!! TCTTGGTGGTGGACTTGAAA+TGG + Chr8:69285932-69285951 MsG0880046119.01.T01:CDS 45.0%
!! TGGGTTTGGTGCTGATGATA+GGG - Chr8:69284687-69284706 None:intergenic 45.0%
!! TGGTGGACTTGAAATGGCTT+TGG + Chr8:69285938-69285957 MsG0880046119.01.T01:CDS 45.0%
!! TAATAACAAAAAAAAAAAAA+AGG - Chr8:69285128-69285147 None:intergenic 5.0%
!!! TATTTTTTTATTTTTTATTC+AGG + Chr8:69285869-69285888 MsG0880046119.01.T01:intron 5.0%
AAGCATCATCGCCGTTAGTC+GGG - Chr8:69287025-69287044 None:intergenic 50.0%
AAGCGGAAACCAAGGTACAC+TGG + Chr8:69287850-69287869 MsG0880046119.01.T01:CDS 50.0%
AAGGTACACTGGCGAGTGAA+AGG + Chr8:69287861-69287880 MsG0880046119.01.T01:exon 50.0%
AATAGGGCCCTGTAGCAGTA+AGG + Chr8:69287698-69287717 MsG0880046119.01.T01:intron 50.0%
AATCTTGTCATGCACAGGGC+AGG + Chr8:69286563-69286582 MsG0880046119.01.T01:intron 50.0%
ATACCCCGGGAACTAAACTG+CGG - Chr8:69285075-69285094 None:intergenic 50.0%
ATAGGGAAAGAGATGCTGCG+TGG + Chr8:69284992-69285011 MsG0880046119.01.T01:CDS 50.0%
ATGGAAGGAGTAGCTCTTGG+TGG + Chr8:69285918-69285937 MsG0880046119.01.T01:CDS 50.0%
CAAAGATCGACTGGAAGGCT+TGG + Chr8:69287813-69287832 MsG0880046119.01.T01:CDS 50.0%
CAAGCCTTCCAGTCGATCTT+TGG - Chr8:69287815-69287834 None:intergenic 50.0%
CAGCGACTACCTAGATTGGT+AGG + Chr8:69286593-69286612 MsG0880046119.01.T01:CDS 50.0%
CTTAGCCTCGGATTGATCCA+TGG - Chr8:69285544-69285563 None:intergenic 50.0%
TCAATTGGCGCAATTGACCC+TGG + Chr8:69287400-69287419 MsG0880046119.01.T01:intron 50.0%
TTGTGCTGGGGCTGATCTAA+AGG + Chr8:69285096-69285115 MsG0880046119.01.T01:CDS 50.0%
TTTCACTCGCCAGTGTACCT+TGG - Chr8:69287862-69287881 None:intergenic 50.0%
! CCGAGCAATTTCAAGTGCCT+TGG - Chr8:69287113-69287132 None:intergenic 50.0%
! GGCATTGAGGCGCTATCAAT+GGG + Chr8:69286662-69286681 MsG0880046119.01.T01:CDS 50.0%
! TCTTTTTGTGGGGAAGGGGT+TGG + Chr8:69285745-69285764 MsG0880046119.01.T01:intron 50.0%
! TGATCCGCAGTTTAGTTCCC+GGG + Chr8:69285068-69285087 MsG0880046119.01.T01:CDS 50.0%
! TGGCATTGAGGCGCTATCAA+TGG + Chr8:69286661-69286680 MsG0880046119.01.T01:CDS 50.0%
!! TTCCCGGGGTATTTTGTGCT+GGG + Chr8:69285083-69285102 MsG0880046119.01.T01:CDS 50.0%
!! TTGATGGGTTTGCCAGAGAC+AGG + Chr8:69286116-69286135 MsG0880046119.01.T01:CDS 50.0%
AGCCCCAGCACAAAATACCC+CGG - Chr8:69285089-69285108 None:intergenic 55.0%
AGCTGAACGAAAGAGACGCG+TGG - Chr8:69286203-69286222 None:intergenic 55.0%
ATCACAGGAACGCAGGACCA+TGG + Chr8:69285524-69285543 MsG0880046119.01.T01:intron 55.0%
CAGGACCATGGATCAATCCG+AGG + Chr8:69285536-69285555 MsG0880046119.01.T01:CDS 55.0%
GAAGGAGTAGCTCTTGGTGG+TGG + Chr8:69285921-69285940 MsG0880046119.01.T01:CDS 55.0%
TGCTGGTGAAGCCCATTCCA+AGG + Chr8:69287093-69287112 MsG0880046119.01.T01:CDS 55.0%
! GATCCGCAGTTTAGTTCCCG+GGG + Chr8:69285069-69285088 MsG0880046119.01.T01:CDS 55.0%
!! GTTCCCGGGGTATTTTGTGC+TGG + Chr8:69285082-69285101 MsG0880046119.01.T01:CDS 55.0%
!! TCCCGGGGTATTTTGTGCTG+GGG + Chr8:69285084-69285103 MsG0880046119.01.T01:CDS 55.0%
CTTGTCATGCACAGGGCAGG+TGG + Chr8:69286566-69286585 MsG0880046119.01.T01:intron 60.0%
GCCCCAGCACAAAATACCCC+GGG - Chr8:69285088-69285107 None:intergenic 60.0%
GGGCCCTGTAGCAGTAAGGA+TGG + Chr8:69287702-69287721 MsG0880046119.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 69284474 69288303 69284474 ID=MsG0880046119.01;Name=MsG0880046119.01
Chr8 mRNA 69284474 69288303 69284474 ID=MsG0880046119.01.T01;Parent=MsG0880046119.01;Name=MsG0880046119.01.T01;_AED=0.50;_eAED=0.52;_QI=0|1|0.87|1|1|1|8|424|349
Chr8 exon 69284474 69284777 69284474 ID=MsG0880046119.01.T01:exon:12943;Parent=MsG0880046119.01.T01
Chr8 exon 69284948 69285117 69284948 ID=MsG0880046119.01.T01:exon:12944;Parent=MsG0880046119.01.T01
Chr8 exon 69285531 69285605 69285531 ID=MsG0880046119.01.T01:exon:12945;Parent=MsG0880046119.01.T01
Chr8 exon 69285891 69285981 69285891 ID=MsG0880046119.01.T01:exon:12946;Parent=MsG0880046119.01.T01
Chr8 exon 69286105 69286156 69286105 ID=MsG0880046119.01.T01:exon:12947;Parent=MsG0880046119.01.T01
Chr8 exon 69286580 69286683 69286580 ID=MsG0880046119.01.T01:exon:12948;Parent=MsG0880046119.01.T01
Chr8 exon 69287071 69287147 69287071 ID=MsG0880046119.01.T01:exon:12949;Parent=MsG0880046119.01.T01
Chr8 exon 69287703 69288303 69287703 ID=MsG0880046119.01.T01:exon:12950;Parent=MsG0880046119.01.T01
Chr8 CDS 69284474 69284777 69284474 ID=MsG0880046119.01.T01:cds;Parent=MsG0880046119.01.T01
Chr8 CDS 69284948 69285117 69284948 ID=MsG0880046119.01.T01:cds;Parent=MsG0880046119.01.T01
Chr8 CDS 69285531 69285605 69285531 ID=MsG0880046119.01.T01:cds;Parent=MsG0880046119.01.T01
Chr8 CDS 69285891 69285981 69285891 ID=MsG0880046119.01.T01:cds;Parent=MsG0880046119.01.T01
Chr8 CDS 69286105 69286156 69286105 ID=MsG0880046119.01.T01:cds;Parent=MsG0880046119.01.T01
Chr8 CDS 69286580 69286683 69286580 ID=MsG0880046119.01.T01:cds;Parent=MsG0880046119.01.T01
Chr8 CDS 69287071 69287147 69287071 ID=MsG0880046119.01.T01:cds;Parent=MsG0880046119.01.T01
Chr8 CDS 69287703 69287879 69287703 ID=MsG0880046119.01.T01:cds;Parent=MsG0880046119.01.T01
Chr8 three_prime_UTR 69287880 69288303 69287880 ID=MsG0880046119.01.T01:three_prime_utr;Parent=MsG0880046119.01.T01
Gene Sequence

>MsG0880046119.01.T01

ATGATTCACTCATTATCTATGTGTAGAGGATTATTTGCAGCAAAAGGATCAAAACACAAACATCTTGTTCTTGTCCGAAAAAGCATTGAAGAAGTGAGCTTCAACTTAATTCAATTCAATTCAATTGATATTAAACAAAACAATAAAATGTGTGCTTTGAGAGTGTTGAACAGATTATCGAATACAACCTCCTACTTCAAAACTTCGAAACCCTATCATCAGCACCAAACCCATAGAACACTTATCTTGGACTCTTCAGCTTCTCAATTTGTCAAGCTTCACAATCTCACTGGCTCAGATTCCGGGATTATTGAAGTTAGCTTGGACAGACCTGAAGCTAAAAATGCTATAGGGAAAGAGATGCTGCGTGGTTTAAGTAATGTGTTTGAATTGATTAATCAGAACTCTAATGCTAATGTTGCTTTGATCCGCAGTTTAGTTCCCGGGGTATTTTGTGCTGGGGCTGATCTAAAGGAACGCAGGACCATGGATCAATCCGAGGCTAAGTTTTTTGTGAATTCTCTTCGTTCCACATTGACATTTCTGGAGGCAATTCGTGTACCCACTATTGCTGTTATGGAAGGAGTAGCTCTTGGTGGTGGACTTGAAATGGCTTTGGCATGTGATATTCGAATATGTGGAGCAAATGCTTTGATGGGTTTGCCAGAGACAGGACTTGCTATAATCCCTGGGGCAGGTGGAACACAGCGACTACCTAGATTGGTAGGAAAATCAGTAGCAAAGGATATTATTTTTACTGGTCGAAAGATTAATGGCATTGAGGCGCTATCAATGGGTCTTGTCAATTACTGTGTTGCTGCTGGTGAAGCCCATTCCAAGGCACTTGAAATTGCTCGGGATATCAATCAAAAGGGCCCTGTAGCAGTAAGGATGGCTAAAAGAGCTATTAACGAGGGAGTGGAGACTGATCTAACATCAGCTTTGGTTTTGGAAGAAGATTGCTATGATCAGGTGTTGAATACCAAAGATCGACTGGAAGGCTTGGCTGCATTTGCTGAAAAGCGGAAACCAAGGTACACTGGCGAGTGA
Protein sequence

>MsG0880046119.01.T01

MIHSLSMCRGLFAAKGSKHKHLVLVRKSIEEVSFNLIQFNSIDIKQNNKMCALRVLNRLSNTTSYFKTSKPYHQHQTHRTLILDSSASQFVKLHNLTGSDSGIIEVSLDRPEAKNAIGKEMLRGLSNVFELINQNSNANVALIRSLVPGVFCAGADLKERRTMDQSEAKFFVNSLRSTLTFLEAIRVPTIAVMEGVALGGGLEMALACDIRICGANALMGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKINGIEALSMGLVNYCVAAGEAHSKALEIARDINQKGPVAVRMAKRAINEGVETDLTSALVLEEDCYDQVLNTKDRLEGLAAFAEKRKPRYTGE*