AlfalfaGEDB | MsG0680034230.01

M. sativa cultivar ZhongmuNo.1 / MsG0680034230.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034230.01.T01	XP_013452410.1	97.015	134	4	0	1	134	1	134	1.23E-84	253

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034230.01.T01	A0A072UBN6	97.015	134	4	0	1	134	1	134	5.89e-85	253

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047944.01	MsG0680034230.01	0.819732	9.950860e-53	7.720681e-50
MsG0080047957.01	MsG0680034230.01	0.820474	6.729367e-53	5.329920e-50
MsG0080047959.01	MsG0680034230.01	0.810474	1.132268e-50	6.831745e-48
MsG0080048152.01	MsG0680034230.01	0.801890	7.273823e-49	3.513850e-46
MsG0080048404.01	MsG0680034230.01	0.837382	5.371819e-57	6.965253e-54
MsG0080048462.01	MsG0680034230.01	0.827826	1.262353e-54	1.232473e-51
MsG0080048463.01	MsG0680034230.01	0.833918	4.046208e-56	4.727945e-53
MsG0080048464.01	MsG0680034230.01	0.828611	8.164109e-55	8.155885e-52
MsG0080048683.01	MsG0680034230.01	0.832884	7.326984e-56	8.299042e-53
MsG0080048826.01	MsG0680034230.01	0.819303	1.246909e-52	9.558474e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034230.01.T01	MTR_6g060172	97.015	134	4	0	1	134	1	134	1.49e-88	253

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034230.01.T01	AT4G10330	59.398	133	46	1	2	134	6	130	1.81e-43	139

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Find 42 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGTTGGACTTCAACAC+TGG	0.515790	6:+84076414	None:intergenic
AATTTAGGGAAATTGGGACC+TGG	0.612696	6:-84076396	MsG0680034230.01.T01:CDS
ACTTGTAAGCCAGGAATTCC+AGG	0.397706	6:+84072043	None:intergenic
AGAAACGGTGATGATGAGAA+GGG	0.603548	6:-84076453	MsG0680034230.01.T01:CDS
ATGATGAGAAGGGTTTGCTG+TGG	0.658773	6:-84076443	MsG0680034230.01.T01:CDS
ATGCTTCCGGAACCACGAAA+AGG	0.546483	6:+84071914	None:intergenic
ATTGAAAGAAAGATGAGAAA+CGG	0.505163	6:-84076468	None:intergenic
ATTTGGTTATGGCGTGGGAA+AGG	0.406178	6:-84071981	MsG0680034230.01.T01:CDS
CATCAAGAGAAATCGACAAG+TGG	0.633315	6:-84070918	MsG0680034230.01.T01:CDS
CCAAAACCAACTTGTAAGCC+AGG	0.540310	6:+84072034	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTACTTGTGAGACTATTT+GGG	+	Chr6:84075788-84075807	None:intergenic	30.0%
AGAGAGAAGAGAATGTTATT+TGG	-	Chr6:84074968-84074987	MsG0680034230.01.T01:intron	30.0%
AGATCAGTGTTGTCAAATAT+TGG	-	Chr6:84072725-84072744	MsG0680034230.01.T01:intron	30.0%
AGCGATATATTCTATCTCTA+TGG	-	Chr6:84075226-84075245	MsG0680034230.01.T01:intron	30.0%
AGTAGAATGGATAGATGATT+TGG	-	Chr6:84072537-84072556	MsG0680034230.01.T01:intron	30.0%
ATGAAACCATAGTCCATAAT+TGG	+	Chr6:84074928-84074947	None:intergenic	30.0%
ATGAAGCACATACATTACAT+AGG	-	Chr6:84071741-84071760	MsG0680034230.01.T01:intron	30.0%
ATTGCAAAATAACCCCTAAA+AGG	+	Chr6:84073943-84073962	None:intergenic	30.0%
ATTTGAATCAACTGCTCAAT+GGG	-	Chr6:84076011-84076030	MsG0680034230.01.T01:intron	30.0%
ATTTGCAGTGATTTGAGAAA+TGG	+	Chr6:84074425-84074444	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	84070909	84076478	84070909	ID=MsG0680034230.01;Name=MsG0680034230.01
Chr6	mRNA	84070909	84076478	84070909	ID=MsG0680034230.01.T01;Parent=MsG0680034230.01;Name=MsG0680034230.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|0\|0\|1\|1\|1\|3\|0\|134
Chr6	exon	84076343	84076478	84076343	ID=MsG0680034230.01.T01:exon:19373;Parent=MsG0680034230.01.T01
Chr6	exon	84071905	84072079	84071905	ID=MsG0680034230.01.T01:exon:19374;Parent=MsG0680034230.01.T01
Chr6	exon	84070909	84071002	84070909	ID=MsG0680034230.01.T01:exon:19375;Parent=MsG0680034230.01.T01
Chr6	CDS	84076343	84076478	84076343	ID=MsG0680034230.01.T01:cds;Parent=MsG0680034230.01.T01
Chr6	CDS	84071905	84072079	84071905	ID=MsG0680034230.01.T01:cds;Parent=MsG0680034230.01.T01
Chr6	CDS	84070909	84071002	84070909	ID=MsG0680034230.01.T01:cds;Parent=MsG0680034230.01.T01

Gene Sequence

>MsG0680034230.01.T01

ATGAGAAACGGTGATGATGAGAAGGGTTTGCTGTGGAAGCTTCCAGTGTTGAAGTCCAACAATTTAGGGAAATTGGGACCTGGATTTGGTGTTGGTGCTGGTTGTGGGCTCGGTTTTGGCATCGGTCTTCTTGGAGGAGTGGGTTTTGGCCCTGGAATTCCTGGCTTACAAGTTGGTTTTGGGTTTGGTGCTGGATGTGGTGTTGGTTTAGGATTTGGTTATGGCGTGGGAAAGGGAATTGCACAAGATGAGTATCGAAGGTACTCAAATGTTGGAAATCCTTTTCGTGGTTCCGGAAGCATTATTAATGAGGATGATATTACTGCACTTGTGGATGACATAGTCATAAATACTAAAAAGCTTATCAAGGCAACATCAAGAGAAATCGACAAGTGGAGAAGATGA

Protein sequence

>MsG0680034230.01.T01

MRNGDDEKGLLWKLPVLKSNNLGKLGPGFGVGAGCGLGFGIGLLGGVGFGPGIPGLQVGFGFGAGCGVGLGFGYGVGKGIAQDEYRRYSNVGNPFRGSGSIINEDDITALVDDIVINTKKLIKATSREIDKWRR*