Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046825.01.T01 | AES91612.1 | 83.012 | 259 | 10 | 2 | 1 | 259 | 1 | 225 | 3.72E-144 | 429 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046825.01.T01 | Q7T322 | 30.672 | 238 | 119 | 7 | 26 | 257 | 24 | 221 | 9.60E-24 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046825.01.T01 | G7JFD6 | 83.012 | 259 | 10 | 2 | 1 | 259 | 1 | 225 | 1.78e-144 | 429 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000010.01 | MsG0880046825.01 | 0.838308 | 3.105704e-57 | 4.142975e-54 |
| MsG0180000544.01 | MsG0880046825.01 | 0.855031 | 8.283396e-62 | 1.886640e-58 |
| MsG0180001706.01 | MsG0880046825.01 | 0.845781 | 3.278732e-59 | 5.525600e-56 |
| MsG0880044225.01 | MsG0880046825.01 | 0.802952 | 4.395136e-49 | 2.181264e-46 |
| MsG0880045010.01 | MsG0880046825.01 | 0.865321 | 6.426766e-65 | 2.082077e-61 |
| MsG0880045548.01 | MsG0880046825.01 | 0.821658 | 3.590914e-53 | 2.939518e-50 |
| MsG0880045605.01 | MsG0880046825.01 | 0.853033 | 3.122343e-61 | 6.654548e-58 |
| MsG0880045704.01 | MsG0880046825.01 | 0.819754 | 9.836511e-53 | 7.636588e-50 |
| MsG0880046825.01 | MsG0880046963.01 | 0.836801 | 7.563459e-57 | 9.636128e-54 |
| MsG0880046825.01 | MsG0880047179.01 | 0.814934 | 1.196232e-51 | 8.134446e-49 |
| MsG0880046825.01 | MsG0880047763.01 | -0.820827 | 5.582712e-53 | 4.465383e-50 |
| MsG0180003246.01 | MsG0880046825.01 | 0.839240 | 1.783162e-57 | 2.447634e-54 |
| MsG0180003767.01 | MsG0880046825.01 | 0.835559 | 1.563839e-56 | 1.919155e-53 |
| MsG0180004447.01 | MsG0880046825.01 | 0.824798 | 6.639191e-54 | 5.942638e-51 |
| MsG0180005515.01 | MsG0880046825.01 | 0.805065 | 1.597904e-49 | 8.373234e-47 |
| MsG0180006034.01 | MsG0880046825.01 | 0.880797 | 4.080815e-70 | 2.332773e-66 |
| MsG0280006306.01 | MsG0880046825.01 | 0.828525 | 8.565886e-55 | 8.535934e-52 |
| MsG0280006418.01 | MsG0880046825.01 | 0.810306 | 1.231020e-50 | 7.394244e-48 |
| MsG0780040295.01 | MsG0880046825.01 | 0.830218 | 3.324359e-55 | 3.480351e-52 |
| MsG0780040476.01 | MsG0880046825.01 | 0.832857 | 7.438542e-56 | 8.418907e-53 |
| MsG0780041470.01 | MsG0880046825.01 | 0.889510 | 2.270183e-73 | 1.836995e-69 |
| MsG0880041901.01 | MsG0880046825.01 | 0.803612 | 3.208679e-49 | 1.619659e-46 |
| MsG0880042987.01 | MsG0880046825.01 | 0.822428 | 2.381626e-53 | 1.992968e-50 |
| MsG0280010604.01 | MsG0880046825.01 | 0.818014 | 2.445416e-52 | 1.809163e-49 |
| MsG0280010884.01 | MsG0880046825.01 | 0.839652 | 1.393855e-57 | 1.937505e-54 |
| MsG0280011059.01 | MsG0880046825.01 | 0.847151 | 1.386318e-59 | 2.441694e-56 |
| MsG0380013794.01 | MsG0880046825.01 | 0.830146 | 3.461255e-55 | 3.616209e-52 |
| MsG0380014401.01 | MsG0880046825.01 | 0.847511 | 1.104033e-59 | 1.966990e-56 |
| MsG0680033625.01 | MsG0880046825.01 | 0.815027 | 1.140611e-51 | 7.776217e-49 |
| MsG0680035311.01 | MsG0880046825.01 | 0.813688 | 2.254959e-51 | 1.482621e-48 |
| MsG0480019162.01 | MsG0880046825.01 | 0.821292 | 4.363519e-53 | 3.535492e-50 |
| MsG0480019163.01 | MsG0880046825.01 | 0.846836 | 1.690785e-59 | 2.947840e-56 |
| MsG0480019689.01 | MsG0880046825.01 | 0.801784 | 7.646200e-49 | 3.683592e-46 |
| MsG0480019843.01 | MsG0880046825.01 | 0.829918 | 3.933969e-55 | 4.083147e-52 |
| MsG0480021153.01 | MsG0880046825.01 | 0.818636 | 1.767925e-52 | 1.330538e-49 |
| MsG0480021490.01 | MsG0880046825.01 | 0.840219 | 9.919985e-58 | 1.403521e-54 |
| MsG0480021776.01 | MsG0880046825.01 | 0.882742 | 8.070168e-71 | 4.975128e-67 |
| MsG0480021845.01 | MsG0880046825.01 | 0.856327 | 3.466671e-62 | 8.243715e-59 |
| MsG0480022781.01 | MsG0880046825.01 | 0.800551 | 1.366694e-48 | 6.381878e-46 |
| MsG0480022872.01 | MsG0880046825.01 | 0.852331 | 4.951252e-61 | 1.031094e-57 |
| MsG0480022939.01 | MsG0880046825.01 | 0.850465 | 1.669011e-60 | 3.272061e-57 |
| MsG0480022956.01 | MsG0880046825.01 | 0.881543 | 2.199548e-70 | 1.294005e-66 |
| MsG0480023973.01 | MsG0880046825.01 | 0.858455 | 8.144356e-63 | 2.079713e-59 |
| MsG0580024264.01 | MsG0880046825.01 | 0.808408 | 3.143621e-50 | 1.796048e-47 |
| MsG0580024837.01 | MsG0880046825.01 | 0.851918 | 6.488465e-61 | 1.333397e-57 |
| MsG0580025182.01 | MsG0880046825.01 | 0.847428 | 1.163653e-59 | 2.067754e-56 |
| MsG0580025369.01 | MsG0880046825.01 | 0.811330 | 7.390893e-51 | 4.561632e-48 |
| MsG0380016191.01 | MsG0880046825.01 | 0.818184 | 2.238228e-52 | 1.663679e-49 |
| MsG0380016347.01 | MsG0880046825.01 | 0.836277 | 1.028353e-56 | 1.289848e-53 |
| MsG0380016547.01 | MsG0880046825.01 | 0.818739 | 1.675039e-52 | 1.264268e-49 |
| MsG0380016619.01 | MsG0880046825.01 | 0.826491 | 2.635133e-54 | 2.474834e-51 |
| MsG0380016828.01 | MsG0880046825.01 | 0.837738 | 4.354297e-57 | 5.709259e-54 |
| MsG0380017776.01 | MsG0880046825.01 | 0.872326 | 3.464944e-67 | 1.443776e-63 |
| MsG0380017878.01 | MsG0880046825.01 | 0.849937 | 2.346184e-60 | 4.521194e-57 |
| MsG0380017891.01 | MsG0880046825.01 | 0.823405 | 1.409735e-53 | 1.212579e-50 |
| MsG0280007193.01 | MsG0880046825.01 | 0.845112 | 4.975542e-59 | 8.204779e-56 |
| MsG0280008928.01 | MsG0880046825.01 | -0.808987 | 2.363904e-50 | 1.371246e-47 |
| MsG0780036089.01 | MsG0880046825.01 | 0.807419 | 5.101830e-50 | 2.840249e-47 |
| MsG0780038309.01 | MsG0880046825.01 | 0.821061 | 4.931282e-53 | 3.970435e-50 |
| MsG0780038473.01 | MsG0880046825.01 | 0.808510 | 2.989931e-50 | 1.712765e-47 |
| MsG0780039997.01 | MsG0880046825.01 | 0.814603 | 1.416483e-51 | 9.546966e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046825.01.T01 | MTR_4g115450 | 83.012 | 259 | 10 | 2 | 1 | 259 | 1 | 225 | 4.50e-148 | 429 |
| MsG0880046825.01.T01 | MTR_4g115450 | 93.478 | 46 | 3 | 0 | 214 | 259 | 1 | 46 | 3.28e-21 | 93.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046825.01.T01 | AT2G11000 | 59.398 | 266 | 68 | 5 | 6 | 267 | 5 | 234 | 4.64e-98 | 301 |
| MsG0880046825.01.T01 | AT2G11000 | 59.398 | 266 | 68 | 5 | 6 | 267 | 5 | 234 | 1.85e-97 | 301 |
| MsG0880046825.01.T01 | AT2G11000 | 59.398 | 266 | 68 | 5 | 6 | 267 | 5 | 234 | 3.49e-97 | 301 |
| MsG0880046825.01.T01 | AT2G11000 | 57.635 | 203 | 50 | 3 | 65 | 267 | 43 | 209 | 7.68e-69 | 226 |
Find 78 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGGAGTGTGAATTATTTC+AGG | 0.245699 | 8:+78797130 | None:intergenic |
| TAGTTGTCATTTGATATTTC+AGG | 0.257785 | 8:-78796041 | MsG0880046825.01.T01:CDS |
| CTCTCAAGTCCCTACCTAAT+AGG | 0.259718 | 8:-78797110 | MsG0880046825.01.T01:five_prime_UTR |
| TGAAATTATCGGCATGAATA+AGG | 0.279259 | 8:+78796794 | None:intergenic |
| CTTTGCTGCCATGTCTGCTT+TGG | 0.284449 | 8:-78796767 | MsG0880046825.01.T01:CDS |
| TCATTTCCATCTTCATTTAG+AGG | 0.293493 | 8:+78795449 | None:intergenic |
| AACTGAAAGAACTGCTTTGC+AGG | 0.308382 | 8:+78795898 | None:intergenic |
| GCATGCGATGATGTCCTTTC+AGG | 0.340844 | 8:+78795956 | None:intergenic |
| CTAGCGTTGCTGTCCCTATT+AGG | 0.365863 | 8:+78797096 | None:intergenic |
| GATTTATTTATCATGTCATA+TGG | 0.369846 | 8:-78795476 | MsG0880046825.01.T01:CDS |
| TGCAGGTTGCACGTATGATT+TGG | 0.378291 | 8:+78795915 | None:intergenic |
| GCAGTCTTATCATCACTAAT+AGG | 0.383405 | 8:+78796446 | None:intergenic |
| TCTCAAGTCCCTACCTAATA+GGG | 0.383726 | 8:-78797109 | MsG0880046825.01.T01:five_prime_UTR |
| TGCTGCCATGTCTGCTTTGG+AGG | 0.386665 | 8:-78796764 | MsG0880046825.01.T01:intron |
| CTCCGGCGATAACTCCGTTT+GGG | 0.393696 | 8:-78796991 | MsG0880046825.01.T01:CDS |
| ATACCTCGCATGCTAGTATA+TGG | 0.402966 | 8:+78796393 | None:intergenic |
| CCTCCGGCGATAACTCCGTT+TGG | 0.414617 | 8:-78796992 | MsG0880046825.01.T01:CDS |
| CTTGGCAAGCGGCGTGGAGG+AGG | 0.428689 | 8:+78796955 | None:intergenic |
| CTCCTCCACGCCGCTTGCCA+AGG | 0.435318 | 8:-78796954 | MsG0880046825.01.T01:intron |
| AGCAAAGAGATTGAAATTAT+CGG | 0.439425 | 8:+78796783 | None:intergenic |
| TGTTGATATTTATTTGTGTC+AGG | 0.439547 | 8:-78795504 | MsG0880046825.01.T01:CDS |
| GAATACGTGGAGGACGGGAC+TGG | 0.443515 | 8:+78797015 | None:intergenic |
| TTTGGCAGAAAGAGTGCAAA+AGG | 0.445412 | 8:+78795933 | None:intergenic |
| CTTCGAAGCTATGGCGACCT+TGG | 0.454729 | 8:-78797069 | MsG0880046825.01.T01:exon |
| CTTGAAACCTCAACATGCTC+TGG | 0.474334 | 8:-78795314 | MsG0880046825.01.T01:CDS |
| GTGACACTTTCGAAGCTAGT+TGG | 0.477896 | 8:+78797224 | None:intergenic |
| TTATCATCACTAATAGGAAC+GGG | 0.482621 | 8:+78796452 | None:intergenic |
| GCTAGCTAGCTTCGAAGCTA+TGG | 0.483305 | 8:-78797078 | MsG0880046825.01.T01:exon |
| CGTTGCTGTCCCTATTAGGT+AGG | 0.483498 | 8:+78797100 | None:intergenic |
| GGTGGTTGTTGCGGCTTCGT+CGG | 0.487063 | 8:+78797040 | None:intergenic |
| GGCTTCGTCGGCGCGATCCA+AGG | 0.489003 | 8:+78797052 | None:intergenic |
| GGACTTCCTCTAAATGAAGA+TGG | 0.489742 | 8:-78795455 | MsG0880046825.01.T01:CDS |
| TGACACTTTCGAAGCTAGTT+GGG | 0.490766 | 8:+78797225 | None:intergenic |
| TTTAACCATAATAAGACAAA+AGG | 0.497860 | 8:-78797197 | MsG0880046825.01.T01:five_prime_UTR |
| GGAGGGAATACGTGGAGGAC+GGG | 0.498276 | 8:+78797010 | None:intergenic |
| TGGCAAGCGGCGTGGAGGAG+GGG | 0.503957 | 8:+78796957 | None:intergenic |
| GGGAGAAACATCGGCCCAAA+CGG | 0.509818 | 8:+78796977 | None:intergenic |
| CTTGACGAAGCCATTGAGAA+TGG | 0.517127 | 8:-78796482 | MsG0880046825.01.T01:CDS |
| TTGGCAAGCGGCGTGGAGGA+GGG | 0.520244 | 8:+78796956 | None:intergenic |
| TTTCAGGCCGTAGGAGATAG+AGG | 0.538488 | 8:+78795972 | None:intergenic |
| TCGATGCATAATTGACATCA+TGG | 0.544259 | 8:-78796417 | MsG0880046825.01.T01:CDS |
| CGGAGGGAATACGTGGAGGA+CGG | 0.545230 | 8:+78797009 | None:intergenic |
| TCTATCTCCTACGGCCTGAA+AGG | 0.549448 | 8:-78795970 | MsG0880046825.01.T01:CDS |
| GTGGAGGAGGGGAGAAACAT+CGG | 0.555375 | 8:+78796968 | None:intergenic |
| GGACTGGACGGTGGTTGTTG+CGG | 0.558718 | 8:+78797031 | None:intergenic |
| ATTCTTGCCTCTATCTCCTA+CGG | 0.560398 | 8:-78795979 | MsG0880046825.01.T01:CDS |
| GTAGTATGTGGAAGCCATAC+CGG | 0.561448 | 8:+78796508 | None:intergenic |
| ATTTGATATTTCAGGCAACA+TGG | 0.568221 | 8:-78796033 | MsG0880046825.01.T01:CDS |
| CTTATCATCACTAATAGGAA+CGG | 0.568799 | 8:+78796451 | None:intergenic |
| CGTCCTCCACGTATTCCCTC+CGG | 0.570916 | 8:-78797008 | MsG0880046825.01.T01:CDS |
| ACGTGGAGGACGGGACTGGA+CGG | 0.571441 | 8:+78797019 | None:intergenic |
| AAATACCTCCAAAGCAGACA+TGG | 0.575051 | 8:+78796759 | None:intergenic |
| ATTTCAGGCAACATGGCACA+AGG | 0.575312 | 8:-78796026 | MsG0880046825.01.T01:CDS |
| GGCCCAAACGGAGTTATCGC+CGG | 0.576460 | 8:+78796989 | None:intergenic |
| GGGAGCAGCACCATTCTCAA+TGG | 0.583675 | 8:+78796472 | None:intergenic |
| GTTGCTGTCCCTATTAGGTA+GGG | 0.592503 | 8:+78797101 | None:intergenic |
| GACCTTGGCAAGCGGCGTGG+AGG | 0.596374 | 8:+78796952 | None:intergenic |
| AAGGACCTTGGCAAGCGGCG+TGG | 0.609593 | 8:+78796949 | None:intergenic |
| TTTGTTGCAGATCTTCAAGA+CGG | 0.611214 | 8:-78796820 | MsG0880046825.01.T01:intron |
| GACCTCACCAGAGCATGTTG+AGG | 0.618729 | 8:+78795307 | None:intergenic |
| AACCTCAACATGCTCTGGTG+AGG | 0.619302 | 8:-78795309 | MsG0880046825.01.T01:CDS |
| TTGGCAGAAAGAGTGCAAAA+GGG | 0.620791 | 8:+78795934 | None:intergenic |
| AAGAATAGACAGTTTGTGCG+AGG | 0.630414 | 8:+78795996 | None:intergenic |
| TTATCGCCGGAGGGAATACG+TGG | 0.630916 | 8:+78797002 | None:intergenic |
| CCAAACGGAGTTATCGCCGG+AGG | 0.635921 | 8:+78796992 | None:intergenic |
| ATGATGTCCTTTCAGGCCGT+AGG | 0.643305 | 8:+78795963 | None:intergenic |
| TGGAGGACGGGACTGGACGG+TGG | 0.647001 | 8:+78797022 | None:intergenic |
| AGAATAGACAGTTTGTGCGA+GGG | 0.649757 | 8:+78795997 | None:intergenic |
| GGACCATATACTAGCATGCG+AGG | 0.655475 | 8:-78796396 | MsG0880046825.01.T01:intron |
| CTATTAGGTAGGGACTTGAG+AGG | 0.656897 | 8:+78797111 | None:intergenic |
| CAAACGGAGTTATCGCCGGA+GGG | 0.664371 | 8:+78796993 | None:intergenic |
| AGAGAAAGGACCTTGGCAAG+CGG | 0.664884 | 8:+78796944 | None:intergenic |
| TTCGTCAAGAGAGTAGTATG+TGG | 0.669549 | 8:+78796496 | None:intergenic |
| TAAATGAAGATGGAAATGAA+AGG | 0.670688 | 8:-78795445 | MsG0880046825.01.T01:CDS |
| TATTAGGTAGGGACTTGAGA+GGG | 0.673388 | 8:+78797112 | None:intergenic |
| TCGCCGGAGGGAATACGTGG+AGG | 0.706158 | 8:+78797005 | None:intergenic |
| TTTCAGGCAACATGGCACAA+GGG | 0.711514 | 8:-78796025 | MsG0880046825.01.T01:CDS |
| AAAGGTACAAGTACACAGCG+CGG | 0.798800 | 8:-78797179 | MsG0880046825.01.T01:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAAGATAATTCATA+TGG | + | Chr8:78795931-78795950 | None:intergenic | 10.0% |
| !!! | AAATAAATATCAACAATTTT+AGG | + | Chr8:78796990-78797009 | None:intergenic | 10.0% |
| !! | AAAATTGTAACATATTTCTT+AGG | + | Chr8:78796302-78796321 | None:intergenic | 15.0% |
| !! | AAATTGTAACATATTTCTTA+GGG | + | Chr8:78796301-78796320 | None:intergenic | 15.0% |
| !! | TGTTTCATTAGTTATTTATA+TGG | - | Chr8:78796788-78796807 | MsG0880046825.01.T01:CDS | 15.0% |
| !! | AATTGTAACATATTTCTTAG+GGG | + | Chr8:78796300-78796319 | None:intergenic | 20.0% |
| !! | ACTAAAATACATAGAATGTT+TGG | - | Chr8:78796759-78796778 | MsG0880046825.01.T01:intron | 20.0% |
| !! | ATACATATAGAACATATGTT+AGG | + | Chr8:78796916-78796935 | None:intergenic | 20.0% |
| !! | ATTATAAGCTTTCATAAGTT+AGG | + | Chr8:78795781-78795800 | None:intergenic | 20.0% |
| !! | GATTTATTTATCATGTCATA+TGG | - | Chr8:78797023-78797042 | MsG0880046825.01.T01:CDS | 20.0% |
| !! | TTTAACCATAATAAGACAAA+AGG | - | Chr8:78795302-78795321 | MsG0880046825.01.T01:CDS | 20.0% |
| !!! | ACAATTTTAGGAAAAAATAG+TGG | + | Chr8:78796978-78796997 | None:intergenic | 20.0% |
| !!! | TTTTGAAGAAACATTTGTTT+GGG | - | Chr8:78796377-78796396 | MsG0880046825.01.T01:intron | 20.0% |
| ! | AGCAAAGAGATTGAAATTAT+CGG | + | Chr8:78795719-78795738 | None:intergenic | 25.0% |
| ! | ATTGTAACATATTTCTTAGG+GGG | + | Chr8:78796299-78796318 | None:intergenic | 25.0% |
| ! | GACTATAGTTTATGCATATT+TGG | + | Chr8:78796327-78796346 | None:intergenic | 25.0% |
| ! | TAAATGAAGATGGAAATGAA+AGG | - | Chr8:78797054-78797073 | MsG0880046825.01.T01:CDS | 25.0% |
| ! | TGTTGATATTTATTTGTGTC+AGG | - | Chr8:78796995-78797014 | MsG0880046825.01.T01:CDS | 25.0% |
| !! | AGCATTGAATAATGAAAAAG+TGG | + | Chr8:78795593-78795612 | None:intergenic | 25.0% |
| !! | TAGTTGTCATTTGATATTTC+AGG | - | Chr8:78796458-78796477 | MsG0880046825.01.T01:CDS | 25.0% |
| !! | TTCTTTCTTTTATCTCTGTT+TGG | - | Chr8:78796665-78796684 | MsG0880046825.01.T01:intron | 25.0% |
| !!! | CTTTTGAAGAAACATTTGTT+TGG | - | Chr8:78796376-78796395 | MsG0880046825.01.T01:intron | 25.0% |
| !!! | TTAGATAATGGATCCAAAAA+TGG | - | Chr8:78795965-78795984 | MsG0880046825.01.T01:CDS | 25.0% |
| !!! | TTGTACCTTTTGTCTTATTA+TGG | + | Chr8:78795310-78795329 | None:intergenic | 25.0% |
| AAAGCAGAAGTAATTGATCA+AGG | + | Chr8:78795643-78795662 | None:intergenic | 30.0% | |
| ACAAGGCAACAATATATAGA+AGG | + | Chr8:78796151-78796170 | None:intergenic | 30.0% | |
| AGTCATGGTTATTTGATACA+AGG | + | Chr8:78796168-78796187 | None:intergenic | 30.0% | |
| ATTTGATATTTCAGGCAACA+TGG | - | Chr8:78796466-78796485 | MsG0880046825.01.T01:CDS | 30.0% | |
| CTTATCATCACTAATAGGAA+CGG | + | Chr8:78796051-78796070 | None:intergenic | 30.0% | |
| GTTAGGAAATCAAACAACTA+AGG | + | Chr8:78796899-78796918 | None:intergenic | 30.0% | |
| TCATTTCCATCTTCATTTAG+AGG | + | Chr8:78797053-78797072 | None:intergenic | 30.0% | |
| TGAAATTATCGGCATGAATA+AGG | + | Chr8:78795708-78795727 | None:intergenic | 30.0% | |
| TTATCATCACTAATAGGAAC+GGG | + | Chr8:78796050-78796069 | None:intergenic | 30.0% | |
| TTATGAGCTTAACTTACTTC+TGG | - | Chr8:78795861-78795880 | MsG0880046825.01.T01:intron | 30.0% | |
| ! | TCTCTAGAAAACTAAAGTCA+TGG | + | Chr8:78796183-78796202 | None:intergenic | 30.0% |
| !!! | GTACTGGTTTTTCTTCTTTT+TGG | - | Chr8:78796696-78796715 | MsG0880046825.01.T01:intron | 30.0% |
| CAGCTCGAATATACAGATTA+TGG | + | Chr8:78796948-78796967 | None:intergenic | 35.0% | |
| CTGTTTGGTCAAATAAGTAC+TGG | - | Chr8:78796680-78796699 | MsG0880046825.01.T01:intron | 35.0% | |
| TAAGCTCATAAAGACCTAGT+AGG | + | Chr8:78795852-78795871 | None:intergenic | 35.0% | |
| TAAGCTTTCATAAGTTAGGC+TGG | + | Chr8:78795777-78795796 | None:intergenic | 35.0% | |
| TCGATGCATAATTGACATCA+TGG | - | Chr8:78796082-78796101 | MsG0880046825.01.T01:intron | 35.0% | |
| TTATCCAAACAGAACCTACT+AGG | - | Chr8:78795835-78795854 | MsG0880046825.01.T01:intron | 35.0% | |
| TTTGTTGCAGATCTTCAAGA+CGG | - | Chr8:78795679-78795698 | MsG0880046825.01.T01:intron | 35.0% | |
| ! | GCAGTCTTATCATCACTAAT+AGG | + | Chr8:78796056-78796075 | None:intergenic | 35.0% |
| ! | GTGTCACTGAAAATTTACAC+TGG | - | Chr8:78796832-78796851 | MsG0880046825.01.T01:intron | 35.0% |
| !! | GTTTTCTAGAGAAACATCTG+AGG | - | Chr8:78796191-78796210 | MsG0880046825.01.T01:intron | 35.0% |
| !! | TCAAAAAGAAGAGTGTCAGA+AGG | - | Chr8:78797146-78797165 | MsG0880046825.01.T01:five_prime_UTR | 35.0% |
| AAATACCTCCAAAGCAGACA+TGG | + | Chr8:78795743-78795762 | None:intergenic | 40.0% | |
| AACTGAAAGAACTGCTTTGC+AGG | + | Chr8:78796604-78796623 | None:intergenic | 40.0% | |
| AAGAATAGACAGTTTGTGCG+AGG | + | Chr8:78796506-78796525 | None:intergenic | 40.0% | |
| AAGACCTAGTAGGTTCTGTT+TGG | + | Chr8:78795842-78795861 | None:intergenic | 40.0% | |
| AAGTTAGGCTGGAGAAGTTA+GGG | + | Chr8:78795766-78795785 | None:intergenic | 40.0% | |
| AGAATAGACAGTTTGTGCGA+GGG | + | Chr8:78796505-78796524 | None:intergenic | 40.0% | |
| ATACCTCGCATGCTAGTATA+TGG | + | Chr8:78796109-78796128 | None:intergenic | 40.0% | |
| ATTCTTGCCTCTATCTCCTA+CGG | - | Chr8:78796520-78796539 | MsG0880046825.01.T01:CDS | 40.0% | |
| CATGCAGTCTTTCTCTAAGT+GGG | - | Chr8:78796855-78796874 | MsG0880046825.01.T01:intron | 40.0% | |
| GGACTTCCTCTAAATGAAGA+TGG | - | Chr8:78797044-78797063 | MsG0880046825.01.T01:CDS | 40.0% | |
| TAAGTTAGGCTGGAGAAGTT+AGG | + | Chr8:78795767-78795786 | None:intergenic | 40.0% | |
| TATTAGGTAGGGACTTGAGA+GGG | + | Chr8:78795390-78795409 | None:intergenic | 40.0% | |
| TCTCAAGTCCCTACCTAATA+GGG | - | Chr8:78795390-78795409 | MsG0880046825.01.T01:CDS | 40.0% | |
| TTCGTCAAGAGAGTAGTATG+TGG | + | Chr8:78796006-78796025 | None:intergenic | 40.0% | |
| ! | ATGGATCCAAAAATGGACTC+CGG | - | Chr8:78795972-78795991 | MsG0880046825.01.T01:CDS | 40.0% |
| ! | GAGGGAGTGTGAATTATTTC+AGG | + | Chr8:78795372-78795391 | None:intergenic | 40.0% |
| ! | TTGGCAGAAAGAGTGCAAAA+GGG | + | Chr8:78796568-78796587 | None:intergenic | 40.0% |
| ! | TTTGGCAGAAAGAGTGCAAA+AGG | + | Chr8:78796569-78796588 | None:intergenic | 40.0% |
| ATTTCAGGCAACATGGCACA+AGG | - | Chr8:78796473-78796492 | MsG0880046825.01.T01:CDS | 45.0% | |
| CAAGGTCCTTTCTCTCTTTC+GGG | - | Chr8:78795563-78795582 | MsG0880046825.01.T01:intron | 45.0% | |
| CCAAGGTCCTTTCTCTCTTT+CGG | - | Chr8:78795562-78795581 | MsG0880046825.01.T01:intron | 45.0% | |
| CTATTAGGTAGGGACTTGAG+AGG | + | Chr8:78795391-78795410 | None:intergenic | 45.0% | |
| CTCTCAAGTCCCTACCTAAT+AGG | - | Chr8:78795389-78795408 | MsG0880046825.01.T01:CDS | 45.0% | |
| CTTGAAACCTCAACATGCTC+TGG | - | Chr8:78797185-78797204 | MsG0880046825.01.T01:five_prime_UTR | 45.0% | |
| CTTGACGAAGCCATTGAGAA+TGG | - | Chr8:78796017-78796036 | MsG0880046825.01.T01:CDS | 45.0% | |
| GCATGCAGTCTTTCTCTAAG+TGG | - | Chr8:78796854-78796873 | MsG0880046825.01.T01:intron | 45.0% | |
| GGAAAACCCGAAAGAGAGAA+AGG | + | Chr8:78795572-78795591 | None:intergenic | 45.0% | |
| GTAGTATGTGGAAGCCATAC+CGG | + | Chr8:78795994-78796013 | None:intergenic | 45.0% | |
| GTTGCTGTCCCTATTAGGTA+GGG | + | Chr8:78795401-78795420 | None:intergenic | 45.0% | |
| TGCAGGTTGCACGTATGATT+TGG | + | Chr8:78796587-78796606 | None:intergenic | 45.0% | |
| TTCTCTAAGTGGGTGGCATA+TGG | - | Chr8:78796865-78796884 | MsG0880046825.01.T01:intron | 45.0% | |
| TTTCAGGCAACATGGCACAA+GGG | - | Chr8:78796474-78796493 | MsG0880046825.01.T01:CDS | 45.0% | |
| ! | AAAGGTACAAGTACACAGCG+CGG | - | Chr8:78795320-78795339 | MsG0880046825.01.T01:CDS | 45.0% |
| ! | CTTACTTCTGGAGATGCTGT+TGG | - | Chr8:78795873-78795892 | MsG0880046825.01.T01:intron | 45.0% |
| ! | TCCAAAAATGGACTCCGGTA+TGG | - | Chr8:78795977-78795996 | MsG0880046825.01.T01:CDS | 45.0% |
| !! | AAATTTATTATATTAAACAA+AGG | + | Chr8:78796267-78796286 | None:intergenic | 5.0% |
| !! | AATTTATTATATTAAACAAA+GGG | + | Chr8:78796266-78796285 | None:intergenic | 5.0% |
| !!! | ATATTTTTTTTTTTAGATAA+TGG | - | Chr8:78795953-78795972 | MsG0880046825.01.T01:CDS | 5.0% |
| AACCTCAACATGCTCTGGTG+AGG | - | Chr8:78797190-78797209 | MsG0880046825.01.T01:five_prime_UTR | 50.0% | |
| AGAGAAAGGACCTTGGCAAG+CGG | + | Chr8:78795558-78795577 | None:intergenic | 50.0% | |
| ATGATGTCCTTTCAGGCCGT+AGG | + | Chr8:78796539-78796558 | None:intergenic | 50.0% | |
| CCGAAAGAGAGAAAGGACCT+TGG | + | Chr8:78795565-78795584 | None:intergenic | 50.0% | |
| CGTTGCTGTCCCTATTAGGT+AGG | + | Chr8:78795402-78795421 | None:intergenic | 50.0% | |
| CTAGCGTTGCTGTCCCTATT+AGG | + | Chr8:78795406-78795425 | None:intergenic | 50.0% | |
| CTTTGCTGCCATGTCTGCTT+TGG | - | Chr8:78795732-78795751 | MsG0880046825.01.T01:intron | 50.0% | |
| GCAGTCTTTCTCTAAGTGGG+TGG | - | Chr8:78796858-78796877 | MsG0880046825.01.T01:intron | 50.0% | |
| GCATGCGATGATGTCCTTTC+AGG | + | Chr8:78796546-78796565 | None:intergenic | 50.0% | |
| GGACCATATACTAGCATGCG+AGG | - | Chr8:78796103-78796122 | MsG0880046825.01.T01:intron | 50.0% | |
| TCTATCTCCTACGGCCTGAA+AGG | - | Chr8:78796529-78796548 | MsG0880046825.01.T01:CDS | 50.0% | |
| TTTCAGGCCGTAGGAGATAG+AGG | + | Chr8:78796530-78796549 | None:intergenic | 50.0% | |
| ! | GCCATACCGGAGTCCATTTT+TGG | + | Chr8:78795981-78796000 | None:intergenic | 50.0% |
| ! | GCTAGCTAGCTTCGAAGCTA+TGG | - | Chr8:78795421-78795440 | MsG0880046825.01.T01:CDS | 50.0% |
| CAAACGGAGTTATCGCCGGA+GGG | + | Chr8:78795509-78795528 | None:intergenic | 55.0% | |
| CTCCGGCGATAACTCCGTTT+GGG | - | Chr8:78795508-78795527 | MsG0880046825.01.T01:CDS | 55.0% | |
| CTTCGAAGCTATGGCGACCT+TGG | - | Chr8:78795430-78795449 | MsG0880046825.01.T01:CDS | 55.0% | |
| GACCTCACCAGAGCATGTTG+AGG | + | Chr8:78797195-78797214 | None:intergenic | 55.0% | |
| GGGAGAAACATCGGCCCAAA+CGG | + | Chr8:78795525-78795544 | None:intergenic | 55.0% | |
| GGGAGCAGCACCATTCTCAA+TGG | + | Chr8:78796030-78796049 | None:intergenic | 55.0% | |
| GTGGAGGAGGGGAGAAACAT+CGG | + | Chr8:78795534-78795553 | None:intergenic | 55.0% | |
| TGCTGCCATGTCTGCTTTGG+AGG | - | Chr8:78795735-78795754 | MsG0880046825.01.T01:intron | 55.0% | |
| TTATCGCCGGAGGGAATACG+TGG | + | Chr8:78795500-78795519 | None:intergenic | 55.0% | |
| CCAAACGGAGTTATCGCCGG+AGG | + | Chr8:78795510-78795529 | None:intergenic | 60.0% | |
| CCTCCGGCGATAACTCCGTT+TGG | - | Chr8:78795507-78795526 | MsG0880046825.01.T01:CDS | 60.0% | |
| CGGAGGGAATACGTGGAGGA+CGG | + | Chr8:78795493-78795512 | None:intergenic | 60.0% | |
| CGTCCTCCACGTATTCCCTC+CGG | - | Chr8:78795491-78795510 | MsG0880046825.01.T01:CDS | 60.0% | |
| GAATACGTGGAGGACGGGAC+TGG | + | Chr8:78795487-78795506 | None:intergenic | 60.0% | |
| GGACTGGACGGTGGTTGTTG+CGG | + | Chr8:78795471-78795490 | None:intergenic | 60.0% | |
| GGAGGGAATACGTGGAGGAC+GGG | + | Chr8:78795492-78795511 | None:intergenic | 60.0% | |
| GGCCCAAACGGAGTTATCGC+CGG | + | Chr8:78795513-78795532 | None:intergenic | 60.0% | |
| GGTGGTTGTTGCGGCTTCGT+CGG | + | Chr8:78795462-78795481 | None:intergenic | 60.0% | |
| AAGGACCTTGGCAAGCGGCG+TGG | + | Chr8:78795553-78795572 | None:intergenic | 65.0% | |
| ACGTGGAGGACGGGACTGGA+CGG | + | Chr8:78795483-78795502 | None:intergenic | 65.0% | |
| TCGCCGGAGGGAATACGTGG+AGG | + | Chr8:78795497-78795516 | None:intergenic | 65.0% | |
| TTGGCAAGCGGCGTGGAGGA+GGG | + | Chr8:78795546-78795565 | None:intergenic | 65.0% | |
| CTCCTCCACGCCGCTTGCCA+AGG | - | Chr8:78795545-78795564 | MsG0880046825.01.T01:intron | 70.0% | |
| CTTGGCAAGCGGCGTGGAGG+AGG | + | Chr8:78795547-78795566 | None:intergenic | 70.0% | |
| GACCTTGGCAAGCGGCGTGG+AGG | + | Chr8:78795550-78795569 | None:intergenic | 70.0% | |
| GGCTTCGTCGGCGCGATCCA+AGG | + | Chr8:78795450-78795469 | None:intergenic | 70.0% | |
| TGGAGGACGGGACTGGACGG+TGG | + | Chr8:78795480-78795499 | None:intergenic | 70.0% | |
| TGGCAAGCGGCGTGGAGGAG+GGG | + | Chr8:78795545-78795564 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 78795277 | 78797244 | 78795277 | ID=MsG0880046825.01;Name=MsG0880046825.01 |
| Chr8 | mRNA | 78795277 | 78797244 | 78795277 | ID=MsG0880046825.01.T01;Parent=MsG0880046825.01;Name=MsG0880046825.01.T01;_AED=0.47;_eAED=0.54;_QI=163|0.5|0.6|1|0.5|0.6|5|0|282 |
| Chr8 | exon | 78795277 | 78795549 | 78795277 | ID=MsG0880046825.01.T01:exon:18941;Parent=MsG0880046825.01.T01 |
| Chr8 | exon | 78795874 | 78796098 | 78795874 | ID=MsG0880046825.01.T01:exon:18940;Parent=MsG0880046825.01.T01 |
| Chr8 | exon | 78796397 | 78796552 | 78796397 | ID=MsG0880046825.01.T01:exon:18939;Parent=MsG0880046825.01.T01 |
| Chr8 | exon | 78796765 | 78796832 | 78796765 | ID=MsG0880046825.01.T01:exon:18938;Parent=MsG0880046825.01.T01 |
| Chr8 | exon | 78796955 | 78797244 | 78796955 | ID=MsG0880046825.01.T01:exon:18937;Parent=MsG0880046825.01.T01 |
| Chr8 | five_prime_UTR | 78797082 | 78797244 | 78797082 | ID=MsG0880046825.01.T01:five_prime_utr;Parent=MsG0880046825.01.T01 |
| Chr8 | CDS | 78796955 | 78797081 | 78796955 | ID=MsG0880046825.01.T01:cds;Parent=MsG0880046825.01.T01 |
| Chr8 | CDS | 78796765 | 78796832 | 78796765 | ID=MsG0880046825.01.T01:cds;Parent=MsG0880046825.01.T01 |
| Chr8 | CDS | 78796397 | 78796552 | 78796397 | ID=MsG0880046825.01.T01:cds;Parent=MsG0880046825.01.T01 |
| Chr8 | CDS | 78795874 | 78796098 | 78795874 | ID=MsG0880046825.01.T01:cds;Parent=MsG0880046825.01.T01 |
| Chr8 | CDS | 78795277 | 78795549 | 78795277 | ID=MsG0880046825.01.T01:cds;Parent=MsG0880046825.01.T01 |
| Gene Sequence |
| Protein sequence |
