AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016347.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016347.01.T01 MTR_3g087920 75.000 124 16 4 1 111 1 122 3.73e-41 138
MsG0380016347.01.T01 MTR_4g113520 39.604 101 45 3 25 111 48 146 5.17e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016347.01.T01 AT2G22120 64.567 127 23 7 1 111 1 121 8.09e-41 138
MsG0380016347.01.T01 AT2G22120 64.800 125 26 6 1 111 1 121 3.15e-40 136

Find 28 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTGGCTGTCCAGCTTGT+AGG 0.288860 3:-82280568 MsG0380016347.01.T01:CDS
ACATGAACACGCAAATGATA+TGG 0.373142 3:+82280658 None:intergenic
CAAATGATATGGAGCCTTGC+AGG 0.383575 3:+82280669 None:intergenic
ATGAAATTCGAAAGTTGAAA+AGG 0.386666 3:+82282910 None:intergenic
TCCTCGATCGACCTCGAAGC+TGG 0.452350 3:-82283000 MsG0380016347.01.T01:CDS
GAAGGATCGACGGGAGGAAG+AGG 0.452406 3:+82283021 None:intergenic
TGAAATTCGAAAGTTGAAAA+GGG 0.455023 3:+82282911 None:intergenic
AATCCGGCACTGGATTTGTT+CGG 0.468251 3:+82282972 None:intergenic
CATCAGTTTCGAGACAAATC+CGG 0.477726 3:+82282956 None:intergenic
GTTCGGAAGGACCAGCTTCG+AGG 0.486967 3:+82282989 None:intergenic
GGATCGACGGGAGGAAGAGG+TGG 0.492231 3:+82283024 None:intergenic
ATGTTGCTGCTGATAGGAAA+TGG 0.495568 3:-82280639 MsG0380016347.01.T01:CDS
TTTCGAGACAAATCCGGCAC+TGG 0.502240 3:+82282962 None:intergenic
GTGTTCATGTTGCTGCTGAT+AGG 0.512174 3:-82280645 MsG0380016347.01.T01:CDS
GTCGATCGAGGAAGGATCGA+CGG 0.549972 3:+82283011 None:intergenic
TGCTCACTGCACTACCTGCA+AGG 0.557409 3:-82280683 MsG0380016347.01.T01:CDS
TCGATCGAGGAAGGATCGAC+GGG 0.570169 3:+82283012 None:intergenic
CTTCCGAACAAATCCAGTGC+CGG 0.570393 3:-82282975 MsG0380016347.01.T01:CDS
AAGAGGTGGGACGAGAGGTG+AGG 0.574463 3:+82283038 None:intergenic
GAAACAGTTAACCTACAAGC+TGG 0.576345 3:+82280557 None:intergenic
GGAGGAAGAGGTGGGACGAG+AGG 0.579989 3:+82283033 None:intergenic
GATCGACGGGAGGAAGAGGT+GGG 0.583686 3:+82283025 None:intergenic
CGGATTTGTCTCGAAACTGA+TGG 0.587776 3:-82282955 MsG0380016347.01.T01:CDS
GCTTCGAGGTCGATCGAGGA+AGG 0.591650 3:+82283003 None:intergenic
GGTGTCTGATTCTGAGTGAT+CGG 0.596499 3:+82283059 None:intergenic
CGGCACTGGATTTGTTCGGA+AGG 0.606477 3:+82282976 None:intergenic
ACCAGCTTCGAGGTCGATCG+AGG 0.612461 3:+82282999 None:intergenic
ATCGAGGAAGGATCGACGGG+AGG 0.639041 3:+82283015 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATCAAACAAA+TGG + Chr3:82280797-82280816 None:intergenic 10.0%
!! ATATTGAAATAATTGTTTAT+AGG - Chr3:82281146-82281165 MsG0380016347.01.T01:intron 10.0%
!! TATTGAAATAATTGTTTATA+GGG - Chr3:82281147-82281166 MsG0380016347.01.T01:intron 10.0%
!!! AAGCAATTTTTTTTTTTTTT+TGG - Chr3:82281974-82281993 MsG0380016347.01.T01:intron 10.0%
!!! AGCAATTTTTTTTTTTTTTT+GGG - Chr3:82281975-82281994 MsG0380016347.01.T01:intron 10.0%
!!! TTAACCTTTTTTAAAAAAAT+AGG - Chr3:82281703-82281722 MsG0380016347.01.T01:intron 10.0%
!! ATAAATAAATATGTATCCAT+CGG + Chr3:82281738-82281757 None:intergenic 15.0%
!! AAAAATAGACAAAATATCTC+TGG + Chr3:82283042-82283061 None:intergenic 20.0%
!! ATACAGTAGAATTTCATATT+TGG - Chr3:82281408-82281427 MsG0380016347.01.T01:intron 20.0%
!! ATCATTGTTTAATTAATCAG+TGG + Chr3:82282412-82282431 None:intergenic 20.0%
!! ATTAATTATTACTAGGAACT+AGG - Chr3:82282312-82282331 MsG0380016347.01.T01:intron 20.0%
!! ATTCCTGATTAATTATTACT+AGG - Chr3:82282305-82282324 MsG0380016347.01.T01:intron 20.0%
!! CAAATTACCAAAAATAAAGA+AGG + Chr3:82282761-82282780 None:intergenic 20.0%
!! GCATCAAATTACAAAATTTA+TGG + Chr3:82281576-82281595 None:intergenic 20.0%
!!! AATGTCATTTTTAACTTTTC+CGG + Chr3:82281857-82281876 None:intergenic 20.0%
!!! AGATATTTTGTCTATTTTTC+TGG - Chr3:82283043-82283062 MsG0380016347.01.T01:CDS 20.0%
!!! ATGTTTACCTTCTTTATTTT+TGG - Chr3:82282751-82282770 MsG0380016347.01.T01:intron 20.0%
!!! CTAAACAAATTTTTTTACAG+AGG - Chr3:82281640-82281659 MsG0380016347.01.T01:intron 20.0%
!!! CTTCTTTATTTTTGGTAATT+TGG - Chr3:82282759-82282778 MsG0380016347.01.T01:intron 20.0%
!!! GTGTCCTATTTTTTTAAAAA+AGG + Chr3:82281710-82281729 None:intergenic 20.0%
! AAGTTGTTCTTATACTATGA+TGG + Chr3:82282273-82282292 None:intergenic 25.0%
! AATAAAAATCAGCAGCATTT+AGG + Chr3:82280876-82280895 None:intergenic 25.0%
! ACTTCTTAAAGATGATTCTT+GGG + Chr3:82281308-82281327 None:intergenic 25.0%
! ATGAAATTCGAAAGTTGAAA+AGG + Chr3:82280720-82280739 None:intergenic 25.0%
! CATACCTGAACTAATTATAA+CGG + Chr3:82281062-82281081 None:intergenic 25.0%
! CTTGTAATTTGAAGATGATT+TGG + Chr3:82281614-82281633 None:intergenic 25.0%
! GTATATAATACAGAATATCC+AGG + Chr3:82282800-82282819 None:intergenic 25.0%
! GTTCCTAGTAATAATTAATC+AGG + Chr3:82282311-82282330 None:intergenic 25.0%
! TACAATATCTTGTCATTGAT+TGG - Chr3:82280944-82280963 MsG0380016347.01.T01:intron 25.0%
! TACTGTATAATTTCTACACA+TGG + Chr3:82281396-82281415 None:intergenic 25.0%
! TATATAAATTTCTCGTCGTT+TGG + Chr3:82282243-82282262 None:intergenic 25.0%
! TCATGATATTCAACGAATTA+CGG + Chr3:82282498-82282517 None:intergenic 25.0%
! TGAAATAATTGTTTATAGGG+AGG - Chr3:82281150-82281169 MsG0380016347.01.T01:intron 25.0%
! TGAAATTCGAAAGTTGAAAA+GGG + Chr3:82280719-82280738 None:intergenic 25.0%
! TTTGTAATTTGATGCATTGA+AGG - Chr3:82281581-82281600 MsG0380016347.01.T01:intron 25.0%
!! CTTTCGAATTTCATTTTGTT+AGG - Chr3:82280726-82280745 MsG0380016347.01.T01:intron 25.0%
!! TGGTTTTCAATTTTATAACC+TGG - Chr3:82282779-82282798 MsG0380016347.01.T01:intron 25.0%
!!! ATTTGAAGATGATTTGGTTT+TGG + Chr3:82281608-82281627 None:intergenic 25.0%
!!! CAACACTGCTTATTTTAAAA+GGG - Chr3:82281490-82281509 MsG0380016347.01.T01:intron 25.0%
!!! GTAGTTTATTTTTACCTAGA+AGG - Chr3:82281333-82281352 MsG0380016347.01.T01:intron 25.0%
!!! TCAACACTGCTTATTTTAAA+AGG - Chr3:82281489-82281508 MsG0380016347.01.T01:intron 25.0%
!!! TTTCGATTTCTTTTGAGAAA+TGG + Chr3:82282593-82282612 None:intergenic 25.0%
AGAAATCGAAAGATCCATTT+AGG - Chr3:82282602-82282621 MsG0380016347.01.T01:intron 30.0%
AGAAATGACCTATATTACAG+GGG - Chr3:82281669-82281688 MsG0380016347.01.T01:intron 30.0%
ATGACCGTTATAATTAGTTC+AGG - Chr3:82281055-82281074 MsG0380016347.01.T01:intron 30.0%
ATTATTACTAGGAACTAGGA+AGG - Chr3:82282316-82282335 MsG0380016347.01.T01:intron 30.0%
CACTTCTTAAAGATGATTCT+TGG + Chr3:82281309-82281328 None:intergenic 30.0%
CAGAAATGACCTATATTACA+GGG - Chr3:82281668-82281687 MsG0380016347.01.T01:intron 30.0%
CATGATATTCAACGAATTAC+GGG + Chr3:82282497-82282516 None:intergenic 30.0%
CGTTATAATTAGTTCAGGTA+TGG - Chr3:82281060-82281079 MsG0380016347.01.T01:intron 30.0%
CTCCTAACAACTTAGTTTAA+GGG + Chr3:82281035-82281054 None:intergenic 30.0%
GACGAAAAAACGAAATTTCA+AGG + Chr3:82283018-82283037 None:intergenic 30.0%
GGCTTCAAAAACTAAACTTT+AGG + Chr3:82282856-82282875 None:intergenic 30.0%
TACACACCCCATAAAAAAAT+TGG + Chr3:82281127-82281146 None:intergenic 30.0%
TAGTAGTGATGATCAATGAA+TGG + Chr3:82281901-82281920 None:intergenic 30.0%
TATATATAGCAATAGTCGCA+AGG - Chr3:82281173-82281192 MsG0380016347.01.T01:intron 30.0%
TCAGAAATGACCTATATTAC+AGG - Chr3:82281667-82281686 MsG0380016347.01.T01:intron 30.0%
TCTCCTAACAACTTAGTTTA+AGG + Chr3:82281036-82281055 None:intergenic 30.0%
TTATTACTAGGAACTAGGAA+GGG - Chr3:82282317-82282336 MsG0380016347.01.T01:intron 30.0%
TTCCCTTAAACTAAGTTGTT+AGG - Chr3:82281030-82281049 MsG0380016347.01.T01:intron 30.0%
! TAAGCGTTGTATGTGTTAAA+TGG - Chr3:82282896-82282915 MsG0380016347.01.T01:intron 30.0%
!! ATTTCTTTTGAGAAATGGAG+AGG + Chr3:82282588-82282607 None:intergenic 30.0%
AAATATGTATCCATCGGTGT+TGG + Chr3:82281732-82281751 None:intergenic 35.0%
AAATGAGCAAGGTATAGACA+GGG + Chr3:82282711-82282730 None:intergenic 35.0%
ACATGAACACGCAAATGATA+TGG + Chr3:82282972-82282991 None:intergenic 35.0%
ACTCCTTAGACACTTCTATA+GGG + Chr3:82281939-82281958 None:intergenic 35.0%
AGTCAGTATCTTAAACTGAC+TGG - Chr3:82282352-82282371 MsG0380016347.01.T01:intron 35.0%
CATTCATCCATCTACTATAC+CGG - Chr3:82281835-82281854 MsG0380016347.01.T01:intron 35.0%
CTATTATTTCCGATAACCGT+TGG + Chr3:82281204-82281223 None:intergenic 35.0%
GAAATGACCTATATTACAGG+GGG - Chr3:82281670-82281689 MsG0380016347.01.T01:intron 35.0%
GTTGGACTCAAATAAGCAAA+TGG - Chr3:82280981-82281000 MsG0380016347.01.T01:intron 35.0%
TACCTGAGAAGGAAACAAAA+CGG + Chr3:82282080-82282099 None:intergenic 35.0%
TGAATATCATGACACTGCAA+AGG - Chr3:82282506-82282525 MsG0380016347.01.T01:intron 35.0%
TGTTAAATGGTGTACTTTGC+AGG - Chr3:82282909-82282928 MsG0380016347.01.T01:CDS 35.0%
! AACTTTTCCGGTATAGTAGA+TGG + Chr3:82281845-82281864 None:intergenic 35.0%
! TGTTTTACCCCCTGTAATAT+AGG + Chr3:82281680-82281699 None:intergenic 35.0%
!! ATATGTTCATCGAGAGTGTT+TGG - Chr3:82282139-82282158 MsG0380016347.01.T01:intron 35.0%
!! TTGGCTTTGATTCGAATTGT+TGG - Chr3:82280963-82280982 MsG0380016347.01.T01:intron 35.0%
AAATGGTGTACTTTGCAGGA+AGG - Chr3:82282913-82282932 MsG0380016347.01.T01:CDS 40.0%
AATGAGCAAGGTATAGACAG+GGG + Chr3:82282710-82282729 None:intergenic 40.0%
ACGCTTAGCAGACTATAAAG+TGG + Chr3:82282883-82282902 None:intergenic 40.0%
ACTCAACACATACTCCTTCT+AGG + Chr3:82281350-82281369 None:intergenic 40.0%
AGAGGATCTCAACTTAACCA+TGG + Chr3:82282570-82282589 None:intergenic 40.0%
ATAGCTCCTTGTAAGTGCAA+AGG - Chr3:82282107-82282126 MsG0380016347.01.T01:intron 40.0%
ATATAGCAATAGTCGCAAGG+AGG - Chr3:82281176-82281195 MsG0380016347.01.T01:intron 40.0%
ATGAAGCATGAACTTCGACA+TGG - Chr3:82281461-82281480 MsG0380016347.01.T01:intron 40.0%
ATGTTGCTGCTGATAGGAAA+TGG - Chr3:82282988-82283007 MsG0380016347.01.T01:CDS 40.0%
CACTCCTTAGACACTTCTAT+AGG + Chr3:82281940-82281959 None:intergenic 40.0%
CATCAGTTTCGAGACAAATC+CGG + Chr3:82280674-82280693 None:intergenic 40.0%
CGCTTAGCAGACTATAAAGT+GGG + Chr3:82282882-82282901 None:intergenic 40.0%
CTATGAAATCCTACCTGAGA+AGG + Chr3:82282091-82282110 None:intergenic 40.0%
CTTGTGGTTTGAGCCAATTT+CGG + Chr3:82281542-82281561 None:intergenic 40.0%
GAAATGAGCAAGGTATAGAC+AGG + Chr3:82282712-82282731 None:intergenic 40.0%
GAGAGATAGACACAAATGAG+AGG + Chr3:82282644-82282663 None:intergenic 40.0%
GAGGATCTCAACTTAACCAT+GGG + Chr3:82282569-82282588 None:intergenic 40.0%
GGGATAGAGAGATAACTGAA+GGG + Chr3:82282549-82282568 None:intergenic 40.0%
GTTCATGCTTCATAGCTCAA+CGG + Chr3:82281454-82281473 None:intergenic 40.0%
TAGCAGACTATAAAGTGGGT+TGG + Chr3:82282878-82282897 None:intergenic 40.0%
TATAGCAATAGTCGCAAGGA+GGG - Chr3:82281177-82281196 MsG0380016347.01.T01:intron 40.0%
TCAGTTATCTCTCTATCCCA+TGG - Chr3:82282550-82282569 MsG0380016347.01.T01:intron 40.0%
TGAGATCCTCTACAATTCGT+TGG + Chr3:82282683-82282702 None:intergenic 40.0%
TGAGCCAATTTCGGTTTACA+GGG + Chr3:82281533-82281552 None:intergenic 40.0%
TGCTCATTTCAGTCAGAGAA+AGG - Chr3:82282722-82282741 MsG0380016347.01.T01:intron 40.0%
TGGGATAGAGAGATAACTGA+AGG + Chr3:82282550-82282569 None:intergenic 40.0%
TTCGTTGGAGAGCTCTATTT+AGG + Chr3:82282668-82282687 None:intergenic 40.0%
TTCTCTGACTGAAATGAGCA+AGG + Chr3:82282722-82282741 None:intergenic 40.0%
TTGAGCCAATTTCGGTTTAC+AGG + Chr3:82281534-82281553 None:intergenic 40.0%
! AAATTGGCTCAAACCACAAG+GGG - Chr3:82281542-82281561 MsG0380016347.01.T01:intron 40.0%
! AGCAGACTATAAAGTGGGTT+GGG + Chr3:82282877-82282896 None:intergenic 40.0%
! GAAATTGGCTCAAACCACAA+GGG - Chr3:82281541-82281560 MsG0380016347.01.T01:intron 40.0%
! GAAGTACCTTTGCACTTACA+AGG + Chr3:82282116-82282135 None:intergenic 40.0%
! GATCCATTTAGGACAGAGAT+AGG - Chr3:82282613-82282632 MsG0380016347.01.T01:intron 40.0%
! TAGAAGGAGTATGTGTTGAG+TGG - Chr3:82281349-82281368 MsG0380016347.01.T01:intron 40.0%
!! AAGCCCTATAGAAGTGTCTA+AGG - Chr3:82281933-82281952 MsG0380016347.01.T01:intron 40.0%
!! ATCGAGAGTGTTTGGATCAT+TGG - Chr3:82282147-82282166 MsG0380016347.01.T01:intron 40.0%
!!! AGGGGGCCAATTTTTTTATG+GGG - Chr3:82281118-82281137 MsG0380016347.01.T01:intron 40.0%
!!! CAGGGGGCCAATTTTTTTAT+GGG - Chr3:82281117-82281136 MsG0380016347.01.T01:intron 40.0%
!!! GTTTTGTTTCCTTCTCAGGT+AGG - Chr3:82282079-82282098 MsG0380016347.01.T01:intron 40.0%
!!! TACCGTTTTGTTTCCTTCTC+AGG - Chr3:82282075-82282094 MsG0380016347.01.T01:intron 40.0%
!!! TCAGGGGGCCAATTTTTTTA+TGG - Chr3:82281116-82281135 MsG0380016347.01.T01:intron 40.0%
AAATAGGACACCAACACCGA+TGG - Chr3:82281719-82281738 MsG0380016347.01.T01:intron 45.0%
ACCTCCCTGTAAACCGAAAT+TGG - Chr3:82281526-82281545 MsG0380016347.01.T01:intron 45.0%
AGCTCTCCAACGAATTGTAG+AGG - Chr3:82282674-82282693 MsG0380016347.01.T01:intron 45.0%
AGTATGTGTTGAGTGGTGCT+TGG - Chr3:82281356-82281375 MsG0380016347.01.T01:intron 45.0%
ATACATTACTGACGTACCCC+AGG + Chr3:82281243-82281262 None:intergenic 45.0%
ATTGGCGATCTGTCAAGGTA+AGG - Chr3:82282165-82282184 MsG0380016347.01.T01:intron 45.0%
CAAATGATATGGAGCCTTGC+AGG + Chr3:82282961-82282980 None:intergenic 45.0%
CGATATATCATGCACAGCTC+TGG + Chr3:82282042-82282061 None:intergenic 45.0%
CGGATTTGTCTCGAAACTGA+TGG - Chr3:82280672-82280691 MsG0380016347.01.T01:CDS 45.0%
GGTGTCTGATTCTGAGTGAT+CGG + Chr3:82280571-82280590 None:intergenic 45.0%
GTATGTGTTGAGTGGTGCTT+GGG - Chr3:82281357-82281376 MsG0380016347.01.T01:intron 45.0%
GTGCCTATCTCTGTCCTAAA+TGG + Chr3:82282619-82282638 None:intergenic 45.0%
GTGTTCATGTTGCTGCTGAT+AGG - Chr3:82282982-82283001 MsG0380016347.01.T01:CDS 45.0%
TACATTACTGACGTACCCCA+GGG + Chr3:82281242-82281261 None:intergenic 45.0%
TTACTAGGAACTAGGAAGGG+TGG - Chr3:82282320-82282339 MsG0380016347.01.T01:intron 45.0%
! AATCCGGCACTGGATTTGTT+CGG + Chr3:82280658-82280677 None:intergenic 45.0%
! ACGGGCTAATACACATCGAT+TGG + Chr3:82282479-82282498 None:intergenic 45.0%
! CACTTGTTGACCACTAAGCA+AGG + Chr3:82282381-82282400 None:intergenic 45.0%
! CGAAATTGGCTCAAACCACA+AGG - Chr3:82281540-82281559 MsG0380016347.01.T01:intron 45.0%
! TTCAGGTATGGCTTGTGAGA+GGG - Chr3:82281072-82281091 MsG0380016347.01.T01:intron 45.0%
AAGGAGGGACCAACGGTTAT+CGG - Chr3:82281192-82281211 MsG0380016347.01.T01:intron 50.0%
AGTCCAGCAGTTCTTAACCC+TGG - Chr3:82281222-82281241 MsG0380016347.01.T01:intron 50.0%
AGTGACGGTGAAGTAGGTTC+AGG - Chr3:82281098-82281117 MsG0380016347.01.T01:intron 50.0%
CTTCCGAACAAATCCAGTGC+CGG - Chr3:82280652-82280671 MsG0380016347.01.T01:CDS 50.0%
CTTGTGAGAGGGTGAAGTGA+CGG - Chr3:82281083-82281102 MsG0380016347.01.T01:intron 50.0%
GCCAATTTCGGTTTACAGGG+AGG + Chr3:82281530-82281549 None:intergenic 50.0%
GGACAGTGTCTGACGAGTTT+CGG - Chr3:82281996-82282015 MsG0380016347.01.T01:intron 50.0%
GGATCATTGGCGATCTGTCA+AGG - Chr3:82282160-82282179 MsG0380016347.01.T01:intron 50.0%
GTCCAGCAGTTCTTAACCCT+GGG - Chr3:82281223-82281242 MsG0380016347.01.T01:intron 50.0%
GTCTGACGAGTTTCGGACAT+CGG - Chr3:82282003-82282022 MsG0380016347.01.T01:intron 50.0%
GTGACGGTGAAGTAGGTTCA+GGG - Chr3:82281099-82281118 MsG0380016347.01.T01:intron 50.0%
TATGGTACTTTCGCCCCTTG+TGG + Chr3:82281558-82281577 None:intergenic 50.0%
TCCAGCAGTTCTTAACCCTG+GGG - Chr3:82281224-82281243 MsG0380016347.01.T01:intron 50.0%
TCTGACGAGTTTCGGACATC+GGG - Chr3:82282004-82282023 MsG0380016347.01.T01:intron 50.0%
TGACGGTGAAGTAGGTTCAG+GGG - Chr3:82281100-82281119 MsG0380016347.01.T01:intron 50.0%
TGACTGGAAGCCTTGCTTAG+TGG - Chr3:82282368-82282387 MsG0380016347.01.T01:intron 50.0%
TTTCGAGACAAATCCGGCAC+TGG + Chr3:82280668-82280687 None:intergenic 50.0%
! GTTCAGGTATGGCTTGTGAG+AGG - Chr3:82281071-82281090 MsG0380016347.01.T01:intron 50.0%
!! TTTCTGGCTGTCCAGCTTGT+AGG - Chr3:82283059-82283078 MsG0380016347.01.T01:CDS 50.0%
ACCCCAGGGTTAAGAACTGC+TGG + Chr3:82281228-82281247 None:intergenic 55.0%
GACGGTGAAGTAGGTTCAGG+GGG - Chr3:82281101-82281120 MsG0380016347.01.T01:intron 55.0%
GGGTGAAGTGACGGTGAAGT+AGG - Chr3:82281092-82281111 MsG0380016347.01.T01:intron 55.0%
GTCGATCGAGGAAGGATCGA+CGG + Chr3:82280619-82280638 None:intergenic 55.0%
TAGTCGCAAGGAGGGACCAA+CGG - Chr3:82281185-82281204 MsG0380016347.01.T01:intron 55.0%
TCGATCGAGGAAGGATCGAC+GGG + Chr3:82280618-82280637 None:intergenic 55.0%
TGCTCACTGCACTACCTGCA+AGG - Chr3:82282944-82282963 MsG0380016347.01.T01:CDS 55.0%
! CGGCACTGGATTTGTTCGGA+AGG + Chr3:82280654-82280673 None:intergenic 55.0%
AAGAGGTGGGACGAGAGGTG+AGG + Chr3:82280592-82280611 None:intergenic 60.0%
ACCAGCTTCGAGGTCGATCG+AGG + Chr3:82280631-82280650 None:intergenic 60.0%
ATCGAGGAAGGATCGACGGG+AGG + Chr3:82280615-82280634 None:intergenic 60.0%
GAAGGATCGACGGGAGGAAG+AGG + Chr3:82280609-82280628 None:intergenic 60.0%
GATCGACGGGAGGAAGAGGT+GGG + Chr3:82280605-82280624 None:intergenic 60.0%
GCTTCGAGGTCGATCGAGGA+AGG + Chr3:82280627-82280646 None:intergenic 60.0%
GTTCGGAAGGACCAGCTTCG+AGG + Chr3:82280641-82280660 None:intergenic 60.0%
TCCTCGATCGACCTCGAAGC+TGG - Chr3:82280627-82280646 MsG0380016347.01.T01:CDS 60.0%
GGAGGAAGAGGTGGGACGAG+AGG + Chr3:82280597-82280616 None:intergenic 65.0%
GGATCGACGGGAGGAAGAGG+TGG + Chr3:82280606-82280625 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 82280564 82283085 82280564 ID=MsG0380016347.01;Name=MsG0380016347.01
Chr3 mRNA 82280564 82283085 82280564 ID=MsG0380016347.01.T01;Parent=MsG0380016347.01;Name=MsG0380016347.01.T01;_AED=0.48;_eAED=0.53;_QI=0|0|0|1|0|0|2|0|112
Chr3 exon 82282902 82283085 82282902 ID=MsG0380016347.01.T01:exon:11782;Parent=MsG0380016347.01.T01
Chr3 exon 82280564 82280718 82280564 ID=MsG0380016347.01.T01:exon:11781;Parent=MsG0380016347.01.T01
Chr3 CDS 82282902 82283085 82282902 ID=MsG0380016347.01.T01:cds;Parent=MsG0380016347.01.T01
Chr3 CDS 82280564 82280718 82280564 ID=MsG0380016347.01.T01:cds;Parent=MsG0380016347.01.T01
Gene Sequence

>MsG0380016347.01.T01

ATGGCCGATCACTCAGAATCAGACACCTCACCTCTCGTCCCACCTCTTCCTCCCGTCGATCCTTCCTCGATCGACCTCGAAGCTGGTCCTTCCGAACAAATCCAGTGCCGGATTTGTCTCGAAACTGATGGTAATTTCAATTTCAACATTTTCCCTTTTCAACTTTCGAATTTCATTTTGTTAGGAAGGATTTGCATTGCTCACTGCACTACCTGCAAGGCTCCATATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGAGAACCTTGAAATTTCGTTTTTTCGTCACCAGAGATATTTTGTCTATTTTTCTGGCTGTCCAGCTTGTAGGTTAA

Protein sequence

>MsG0380016347.01.T01

MADHSESDTSPLVPPLPPVDPSSIDLEAGPSEQIQCRICLETDGNFNFNIFPFQLSNFILLGRICIAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILSIFLAVQLVG*