Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016466.01.T01 | XP_003602138.1 | 93.443 | 366 | 24 | 0 | 1 | 366 | 1 | 366 | 0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016466.01.T01 | Q84VY3 | 69.209 | 354 | 104 | 2 | 18 | 366 | 38 | 391 | 0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016466.01.T01 | G7J5N5 | 93.443 | 366 | 24 | 0 | 1 | 366 | 1 | 366 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048357.01 | MsG0380016466.01 | 0.859834 | 3.144047e-63 | 8.418446e-60 |
| MsG0180000632.01 | MsG0380016466.01 | 0.814501 | 1.492121e-51 | 1.002958e-48 |
| MsG0180001200.01 | MsG0380016466.01 | 0.838033 | 3.655799e-57 | 4.836811e-54 |
| MsG0180001771.01 | MsG0380016466.01 | 0.800606 | 1.331847e-48 | 6.227937e-46 |
| MsG0380011496.01 | MsG0380016466.01 | 0.806200 | 9.234947e-50 | 4.982240e-47 |
| MsG0380011675.01 | MsG0380016466.01 | 0.808003 | 3.834325e-50 | 2.167436e-47 |
| MsG0380016465.01 | MsG0380016466.01 | 0.857368 | 1.711619e-62 | 4.214557e-59 |
| MsG0380016466.01 | MsG0480018909.01 | 0.803164 | 3.973227e-49 | 1.982649e-46 |
| MsG0380016466.01 | MsG0580024094.01 | 0.812661 | 3.789243e-51 | 2.423465e-48 |
| MsG0380016466.01 | MsG0580029310.01 | 0.810780 | 9.722825e-51 | 5.914658e-48 |
| MsG0380016466.01 | MsG0580029405.01 | 0.811097 | 8.302471e-51 | 5.093314e-48 |
| MsG0380016466.01 | MsG0580029417.01 | 0.837961 | 3.814919e-57 | 5.036180e-54 |
| MsG0380016466.01 | MsG0580029418.01 | 0.829874 | 4.033089e-55 | 4.181015e-52 |
| MsG0380016466.01 | MsG0680031707.01 | 0.836027 | 1.190154e-56 | 1.481298e-53 |
| MsG0380016466.01 | MsG0680033143.01 | 0.859481 | 4.014444e-63 | 1.061810e-59 |
| MsG0380016466.01 | MsG0680034835.01 | 0.825559 | 4.387759e-54 | 4.013065e-51 |
| MsG0380016466.01 | MsG0780040846.01 | 0.808820 | 2.567210e-50 | 1.482568e-47 |
| MsG0380016466.01 | MsG0780040966.01 | 0.816429 | 5.555402e-52 | 3.935299e-49 |
| MsG0380016466.01 | MsG0880045585.01 | 0.800630 | 1.316874e-48 | 6.161728e-46 |
| MsG0280007305.01 | MsG0380016466.01 | 0.832160 | 1.107656e-55 | 1.227822e-52 |
| MsG0280010163.01 | MsG0380016466.01 | 0.813756 | 2.179069e-51 | 1.435328e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016466.01.T01 | MTR_3g090020 | 93.443 | 366 | 24 | 0 | 1 | 366 | 1 | 366 | 0.0 | 720 |
| MsG0380016466.01.T01 | MTR_3g090100 | 92.350 | 366 | 28 | 0 | 1 | 366 | 1 | 366 | 0.0 | 717 |
| MsG0380016466.01.T01 | MTR_3g089025 | 79.781 | 366 | 70 | 1 | 5 | 366 | 4 | 369 | 0.0 | 614 |
| MsG0380016466.01.T01 | MTR_3g090010 | 76.294 | 367 | 82 | 1 | 3 | 364 | 2 | 368 | 0.0 | 590 |
| MsG0380016466.01.T01 | MTR_1g029150 | 74.709 | 344 | 84 | 1 | 26 | 366 | 47 | 390 | 0.0 | 551 |
| MsG0380016466.01.T01 | MTR_4g087440 | 65.143 | 350 | 114 | 3 | 23 | 366 | 46 | 393 | 3.51e-171 | 483 |
| MsG0380016466.01.T01 | MTR_5g024130 | 65.143 | 350 | 114 | 3 | 23 | 366 | 46 | 393 | 3.55e-171 | 483 |
| MsG0380016466.01.T01 | MTR_3g090110 | 50.000 | 118 | 36 | 1 | 210 | 327 | 1 | 95 | 1.26e-31 | 115 |
| MsG0380016466.01.T01 | MTR_3g089980 | 60.825 | 97 | 25 | 1 | 231 | 327 | 7 | 90 | 1.95e-28 | 106 |
| MsG0380016466.01.T01 | MTR_3g089973 | 40.541 | 148 | 44 | 3 | 210 | 357 | 1 | 104 | 2.00e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016466.01.T01 | AT1G43800 | 69.209 | 354 | 104 | 2 | 18 | 366 | 38 | 391 | 0.0 | 523 |
| MsG0380016466.01.T01 | AT3G02630 | 65.680 | 338 | 112 | 2 | 29 | 364 | 59 | 394 | 2.13e-167 | 473 |
| MsG0380016466.01.T01 | AT5G16240 | 63.610 | 349 | 118 | 3 | 23 | 364 | 46 | 392 | 4.20e-166 | 470 |
| MsG0380016466.01.T01 | AT2G43710 | 64.307 | 339 | 118 | 2 | 29 | 366 | 65 | 401 | 9.54e-164 | 464 |
| MsG0380016466.01.T01 | AT2G43710 | 64.307 | 339 | 118 | 2 | 29 | 366 | 65 | 401 | 1.08e-163 | 464 |
| MsG0380016466.01.T01 | AT3G02610 | 59.946 | 372 | 129 | 5 | 14 | 366 | 41 | 411 | 1.31e-163 | 464 |
| MsG0380016466.01.T01 | AT3G02610 | 59.946 | 372 | 129 | 5 | 14 | 366 | 43 | 413 | 1.31e-163 | 464 |
| MsG0380016466.01.T01 | AT3G02620 | 60.165 | 364 | 133 | 4 | 14 | 366 | 41 | 403 | 1.38e-162 | 461 |
| MsG0380016466.01.T01 | AT3G02620 | 60.165 | 364 | 133 | 4 | 14 | 366 | 44 | 406 | 1.58e-162 | 461 |
| MsG0380016466.01.T01 | AT5G16230 | 61.988 | 342 | 125 | 3 | 29 | 366 | 61 | 401 | 4.11e-161 | 457 |
| MsG0380016466.01.T01 | AT5G16230 | 62.270 | 326 | 118 | 3 | 45 | 366 | 1 | 325 | 5.39e-155 | 439 |
| MsG0380016466.01.T01 | AT3G02620 | 62.195 | 328 | 117 | 3 | 45 | 366 | 1 | 327 | 1.98e-153 | 435 |
Find 91 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATTATCTTGTGGTTT+TGG | 0.271084 | 3:-83873249 | MsG0380016466.01.T01:CDS |
| AATCTTGTGCTGCATCATTT+TGG | 0.271325 | 3:+83872219 | None:intergenic |
| GAGACATTGAGTGTGTCTTT+TGG | 0.299881 | 3:+83873450 | None:intergenic |
| CCAACTTGTTTATCCATGTT+TGG | 0.336928 | 3:+83873189 | None:intergenic |
| GTCTCACACCATGGGCTATA+TGG | 0.350432 | 3:-83873139 | MsG0380016466.01.T01:CDS |
| GTGGACTTGCACCTAGATTA+AGG | 0.352719 | 3:-83872003 | MsG0380016466.01.T01:CDS |
| CTCTCAGGGCCTGCACTTGA+TGG | 0.353548 | 3:+83873291 | None:intergenic |
| TTGTTCATGGTGTAGGATTT+GGG | 0.366166 | 3:-83872469 | MsG0380016466.01.T01:intron |
| GGGCTATATGGTCACGCTCT+TGG | 0.370720 | 3:-83873127 | MsG0380016466.01.T01:CDS |
| TGCCAGCTCCAATCAAATAT+TGG | 0.374430 | 3:+83873015 | None:intergenic |
| TGTTCAAATCACTAGAGAAA+TGG | 0.378630 | 3:-83873412 | MsG0380016466.01.T01:CDS |
| CTTGATTAGACGATGGAGAT+TGG | 0.392791 | 3:-83872077 | MsG0380016466.01.T01:CDS |
| GTTCAAATCACTAGAGAAAT+GGG | 0.399384 | 3:-83873411 | MsG0380016466.01.T01:CDS |
| AAGACTATCCAATATTTGAT+TGG | 0.400329 | 3:-83873023 | MsG0380016466.01.T01:CDS |
| GCTCAGCCGTTCGATCTCTC+AGG | 0.408301 | 3:+83873276 | None:intergenic |
| TCTGCGGTGGCACAACGTAT+TGG | 0.420320 | 3:-83872139 | MsG0380016466.01.T01:CDS |
| GGCTGCCAGCATTCCTCCAC+AGG | 0.422913 | 3:+83873359 | None:intergenic |
| GTGTACACAAAACCCATGTA+TGG | 0.438769 | 3:+83872433 | None:intergenic |
| TCTTCTAGTTTCCTTAATCT+AGG | 0.439715 | 3:+83871992 | None:intergenic |
| GGGCCTTTAGATAACATTGT+AGG | 0.442941 | 3:+83873495 | None:intergenic |
| GATGGAGTTGGCGACGAGAC+TGG | 0.447459 | 3:-83873167 | MsG0380016466.01.T01:CDS |
| AGATCAACAACAAATTTACT+TGG | 0.459272 | 3:-83871946 | MsG0380016466.01.T01:CDS |
| ATCCAATATTTGATTGGAGC+TGG | 0.463614 | 3:-83873017 | MsG0380016466.01.T01:CDS |
| GGCCTTTAGATAACATTGTA+GGG | 0.464982 | 3:+83873496 | None:intergenic |
| TACCGAAAACAACCCATACA+TGG | 0.467155 | 3:-83872446 | MsG0380016466.01.T01:CDS |
| CTCGTACTTGCACGCGTATG+CGG | 0.473722 | 3:-83872340 | MsG0380016466.01.T01:CDS |
| AGTGGATCCCACCGAGGCTA+TGG | 0.482931 | 3:-83872251 | MsG0380016466.01.T01:CDS |
| GGCTATGGCCACCATAGCCT+CGG | 0.489653 | 3:+83872240 | None:intergenic |
| TGGAGATTGGAGAAGCTTGA+GGG | 0.490817 | 3:-83872064 | MsG0380016466.01.T01:CDS |
| TCTCTTTAGCCAACCTACCT+AGG | 0.494048 | 3:+83872371 | None:intergenic |
| TTCACAAAATGTGTTGCCAT+TGG | 0.497194 | 3:-83873387 | MsG0380016466.01.T01:CDS |
| AAAACCACAAGATAATCATC+TGG | 0.498146 | 3:+83873251 | None:intergenic |
| TTTATCCATGTTTGGTACGT+AGG | 0.501588 | 3:+83873197 | None:intergenic |
| TCGTACTTGCACGCGTATGC+GGG | 0.518633 | 3:-83872339 | MsG0380016466.01.T01:CDS |
| TCGGAAGGTAGTGATGAGTC+TGG | 0.523237 | 3:+83873323 | None:intergenic |
| TCCCCTACAATGTTATCTAA+AGG | 0.527355 | 3:-83873498 | MsG0380016466.01.T01:CDS |
| GCTTCCAGATGATTATCTTG+TGG | 0.527931 | 3:-83873255 | MsG0380016466.01.T01:CDS |
| CCAAACATGGATAAACAAGT+TGG | 0.530351 | 3:-83873189 | MsG0380016466.01.T01:CDS |
| CATTGCCTACGTACCAAACA+TGG | 0.538689 | 3:-83873202 | MsG0380016466.01.T01:CDS |
| ATATTTGATTGGAGCTGGCA+TGG | 0.538813 | 3:-83873012 | MsG0380016466.01.T01:intron |
| CCGTCATGCATCAAGTGAGC+GGG | 0.547019 | 3:+83872190 | None:intergenic |
| TTAAACCTGTGGAGGAATGC+TGG | 0.548548 | 3:-83873364 | MsG0380016466.01.T01:CDS |
| AAAACTTATCTCTATCTCTC+CGG | 0.550395 | 3:-83873071 | MsG0380016466.01.T01:CDS |
| AAATGTGGCTCGCTCTTGAA+AGG | 0.555847 | 3:+83872408 | None:intergenic |
| ATTGTAGGGGAGTCCACGCA+TGG | 0.558263 | 3:+83873510 | None:intergenic |
| ATAAACAAGTTGGATGGAGT+TGG | 0.559959 | 3:-83873179 | MsG0380016466.01.T01:CDS |
| GGATCCCACCGAGGCTATGG+TGG | 0.562827 | 3:-83872248 | MsG0380016466.01.T01:CDS |
| ATGGAGATTGGAGAAGCTTG+AGG | 0.564413 | 3:-83872065 | MsG0380016466.01.T01:CDS |
| CATGCACATATCAACTCTAC+CGG | 0.564833 | 3:+83873052 | None:intergenic |
| TGTGGAAAAGCTTCTAGAAG+TGG | 0.566245 | 3:-83872269 | MsG0380016466.01.T01:CDS |
| TGAGTTCATCCATCAAGTGC+AGG | 0.567672 | 3:-83873300 | MsG0380016466.01.T01:CDS |
| TCCTCCACAGGTTTAACCAA+TGG | 0.568150 | 3:+83873371 | None:intergenic |
| TATGGCCACCATAGCCTCGG+TGG | 0.570103 | 3:+83872243 | None:intergenic |
| ACATGGATAAACAAGTTGGA+TGG | 0.572710 | 3:-83873185 | MsG0380016466.01.T01:CDS |
| CTCAGCCGTTCGATCTCTCA+GGG | 0.579284 | 3:+83873277 | None:intergenic |
| CTTGAGGGTTTGACAAGCGA+AGG | 0.581134 | 3:-83872049 | MsG0380016466.01.T01:CDS |
| CCCGCTCACTTGATGCATGA+CGG | 0.584289 | 3:-83872190 | MsG0380016466.01.T01:CDS |
| CGCATACGCGTGCAAGTACG+AGG | 0.584480 | 3:+83872341 | None:intergenic |
| ACACGGAAACCTAGGTAGGT+TGG | 0.591464 | 3:-83872380 | MsG0380016466.01.T01:CDS |
| CAACATTATGCACCCATGCG+TGG | 0.592760 | 3:-83873523 | MsG0380016466.01.T01:CDS |
| TTTGTATCACACGGAAACCT+AGG | 0.594979 | 3:-83872388 | MsG0380016466.01.T01:CDS |
| TGGTTCAAGTCTCACACCAT+GGG | 0.600203 | 3:-83873147 | MsG0380016466.01.T01:CDS |
| TAGAGTTCTTGATTAGACGA+TGG | 0.605110 | 3:-83872084 | MsG0380016466.01.T01:CDS |
| TCCGTCATGCATCAAGTGAG+CGG | 0.606640 | 3:+83872189 | None:intergenic |
| CTGGTTCAAGTCTCACACCA+TGG | 0.612232 | 3:-83873148 | MsG0380016466.01.T01:CDS |
| GCAGGCCCTGAGAGATCGAA+CGG | 0.616767 | 3:-83873282 | MsG0380016466.01.T01:CDS |
| ATGGCCACCATAGCCTCGGT+GGG | 0.619166 | 3:+83872244 | None:intergenic |
| GCCTTTAGATAACATTGTAG+GGG | 0.623075 | 3:+83873497 | None:intergenic |
| CGAGCCACATTTGTATCACA+CGG | 0.623581 | 3:-83872397 | MsG0380016466.01.T01:CDS |
| GAGCGTGACCATATAGCCCA+TGG | 0.625365 | 3:+83873131 | None:intergenic |
| ACCGAAAACAACCCATACAT+GGG | 0.628237 | 3:-83872445 | MsG0380016466.01.T01:CDS |
| TATCAAATTAACAATGACGA+TGG | 0.630822 | 3:-83873546 | None:intergenic |
| GCCATTGGTTAAACCTGTGG+AGG | 0.632502 | 3:-83873372 | MsG0380016466.01.T01:CDS |
| GGTAGGTTGGCTAAAGAGAG+AGG | 0.635441 | 3:-83872367 | MsG0380016466.01.T01:CDS |
| TCCTCACATATGCATTCTCG+TGG | 0.635762 | 3:+83872293 | None:intergenic |
| TGTACACAAAACCCATGTAT+GGG | 0.636404 | 3:+83872434 | None:intergenic |
| TATCACACGGAAACCTAGGT+AGG | 0.636743 | 3:-83872384 | MsG0380016466.01.T01:CDS |
| CTCGTGGCGCTTCTCATCAG+CGG | 0.641370 | 3:+83872309 | None:intergenic |
| GAATGCATATGTGAGGATTG+TGG | 0.642224 | 3:-83872287 | MsG0380016466.01.T01:CDS |
| TTGTAGGGGAGTCCACGCAT+GGG | 0.642906 | 3:+83873511 | None:intergenic |
| GTTGCCATTGGTTAAACCTG+TGG | 0.644205 | 3:-83873375 | MsG0380016466.01.T01:CDS |
| CATGCACAAGAGTTCGTGTG+TGG | 0.649922 | 3:-83872022 | MsG0380016466.01.T01:CDS |
| GAGTCTGGCAACAAATTATG+TGG | 0.650290 | 3:+83873338 | None:intergenic |
| CACTTGATGGATGAACTCAT+CGG | 0.663477 | 3:+83873304 | None:intergenic |
| ACCGCTGAAGAAAATAGACA+TGG | 0.664992 | 3:-83873104 | MsG0380016466.01.T01:CDS |
| GCCACGAGAATGCATATGTG+AGG | 0.667191 | 3:-83872294 | MsG0380016466.01.T01:CDS |
| TGATGGATGAACTCATCGGA+AGG | 0.673548 | 3:+83873308 | None:intergenic |
| GGCGTCTATAAAATTTCACA+AGG | 0.689973 | 3:+83871904 | None:intergenic |
| GTTTCCGTGTGATACAAATG+TGG | 0.700218 | 3:+83872393 | None:intergenic |
| TCTAGAAGTGGATCCCACCG+AGG | 0.721401 | 3:-83872257 | MsG0380016466.01.T01:CDS |
| GGTTGGTAGCATGATCACTG+AGG | 0.753309 | 3:-83873228 | MsG0380016466.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATGAAAAATGTTATT+TGG | + | Chr3:83872957-83872976 | None:intergenic | 10.0% |
| !! | ATAAATTATTTGATTGTTCA+TGG | - | Chr3:83872970-83872989 | MsG0380016466.01.T01:intron | 15.0% |
| !! | TGTAATAAATCATATGTGTA+TGG | + | Chr3:83872740-83872759 | None:intergenic | 20.0% |
| ! | AAACTAACGAGAATAACAAA+TGG | - | Chr3:83872639-83872658 | MsG0380016466.01.T01:intron | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | - | Chr3:83872429-83872448 | MsG0380016466.01.T01:CDS | 25.0% |
| ! | AGATCAACAACAAATTTACT+TGG | - | Chr3:83873506-83873525 | MsG0380016466.01.T01:CDS | 25.0% |
| ! | ATGTGATAGATAGAATATGT+TGG | + | Chr3:83872893-83872912 | None:intergenic | 25.0% |
| !! | ATGTCATTTGTAATACTATG+TGG | + | Chr3:83872710-83872729 | None:intergenic | 25.0% |
| !! | TGTCATTTGTAATACTATGT+GGG | + | Chr3:83872709-83872728 | None:intergenic | 25.0% |
| AAAACCACAAGATAATCATC+TGG | + | Chr3:83872204-83872223 | None:intergenic | 30.0% | |
| AAAACTTATCTCTATCTCTC+CGG | - | Chr3:83872381-83872400 | MsG0380016466.01.T01:CDS | 30.0% | |
| AACGACTGTTAAAAAAACAG+AGG | + | Chr3:83872830-83872849 | None:intergenic | 30.0% | |
| GTTCAAATCACTAGAGAAAT+GGG | - | Chr3:83872041-83872060 | MsG0380016466.01.T01:CDS | 30.0% | |
| TATTTGATTGTTCATGGTGT+AGG | - | Chr3:83872976-83872995 | MsG0380016466.01.T01:intron | 30.0% | |
| TGTTCAAATCACTAGAGAAA+TGG | - | Chr3:83872040-83872059 | MsG0380016466.01.T01:CDS | 30.0% | |
| TTAGTTTCAGGCAAATGTAT+TGG | + | Chr3:83872626-83872645 | None:intergenic | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | - | Chr3:83872203-83872222 | MsG0380016466.01.T01:CDS | 30.0% |
| ! | TAAAAGACACCTTCATGTTT+TGG | - | Chr3:83872516-83872535 | MsG0380016466.01.T01:intron | 30.0% |
| ! | TTCTATTTCTTTCTCCTTCA+AGG | - | Chr3:83872918-83872937 | MsG0380016466.01.T01:intron | 30.0% |
| ! | TTGAACACTTCTTTCTTTTC+AGG | + | Chr3:83872027-83872046 | None:intergenic | 30.0% |
| ! | TTGTTATTCTCGTTAGTTTC+AGG | + | Chr3:83872638-83872657 | None:intergenic | 30.0% |
| !! | TCTTCTAGTTTCCTTAATCT+AGG | + | Chr3:83873463-83873482 | None:intergenic | 30.0% |
| !! | TTTTAGGAATGTTTTGGATG+GGG | + | Chr3:83871980-83871999 | None:intergenic | 30.0% |
| !!! | GTTTTAGGAATGTTTTGGAT+GGG | + | Chr3:83871981-83872000 | None:intergenic | 30.0% |
| ATAAACGAGCCAAAACATGA+AGG | + | Chr3:83872528-83872547 | None:intergenic | 35.0% | |
| ATCCAATATTTGATTGGAGC+TGG | - | Chr3:83872435-83872454 | MsG0380016466.01.T01:CDS | 35.0% | |
| ATTGTTCATGGTGTAGGATT+TGG | - | Chr3:83872982-83873001 | MsG0380016466.01.T01:intron | 35.0% | |
| CCAAACATGGATAAACAAGT+TGG | - | Chr3:83872263-83872282 | MsG0380016466.01.T01:CDS | 35.0% | |
| GACATATGCATAAACCTTGA+AGG | + | Chr3:83872935-83872954 | None:intergenic | 35.0% | |
| GCCTTTAGATAACATTGTAG+GGG | + | Chr3:83871958-83871977 | None:intergenic | 35.0% | |
| GGCCTTTAGATAACATTGTA+GGG | + | Chr3:83871959-83871978 | None:intergenic | 35.0% | |
| TAGAGTTCTTGATTAGACGA+TGG | - | Chr3:83873368-83873387 | MsG0380016466.01.T01:CDS | 35.0% | |
| TCCCCTACAATGTTATCTAA+AGG | - | Chr3:83871954-83871973 | MsG0380016466.01.T01:CDS | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | + | Chr3:83873021-83873040 | None:intergenic | 35.0% | |
| TTCACAAAATGTGTTGCCAT+TGG | - | Chr3:83872065-83872084 | MsG0380016466.01.T01:CDS | 35.0% | |
| TTGTTCATGGTGTAGGATTT+GGG | - | Chr3:83872983-83873002 | MsG0380016466.01.T01:intron | 35.0% | |
| TTTATCCATGTTTGGTACGT+AGG | + | Chr3:83872258-83872277 | None:intergenic | 35.0% | |
| ! | AAAAATGATCGAAGAAGCGT+GGG | + | Chr3:83873294-83873313 | None:intergenic | 35.0% |
| ! | AATCTTGTGCTGCATCATTT+TGG | + | Chr3:83873236-83873255 | None:intergenic | 35.0% |
| ! | ACATGGATAAACAAGTTGGA+TGG | - | Chr3:83872267-83872286 | MsG0380016466.01.T01:CDS | 35.0% |
| ! | AGACATTGAGTGTGTCTTTT+GGG | + | Chr3:83872004-83872023 | None:intergenic | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | - | Chr3:83872273-83872292 | MsG0380016466.01.T01:CDS | 35.0% |
| ! | CCAACTTGTTTATCCATGTT+TGG | + | Chr3:83872266-83872285 | None:intergenic | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | + | Chr3:83872352-83872371 | None:intergenic | 35.0% |
| !! | CTTCTTCGATCATTTTTCTG+CGG | - | Chr3:83873297-83873316 | MsG0380016466.01.T01:CDS | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+TGG | - | Chr3:83872207-83872226 | MsG0380016466.01.T01:CDS | 35.0% |
| !!! | GGTTTTAGGAATGTTTTGGA+TGG | + | Chr3:83871982-83872001 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTTAGGAATGTTT+TGG | + | Chr3:83871986-83872005 | None:intergenic | 35.0% |
| ACCGAAAACAACCCATACAT+GGG | - | Chr3:83873007-83873026 | MsG0380016466.01.T01:intron | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | - | Chr3:83872348-83872367 | MsG0380016466.01.T01:CDS | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | - | Chr3:83872440-83872459 | MsG0380016466.01.T01:CDS | 40.0% | |
| CATGCACATATCAACTCTAC+CGG | + | Chr3:83872403-83872422 | None:intergenic | 40.0% | |
| CTTGATTAGACGATGGAGAT+TGG | - | Chr3:83873375-83873394 | MsG0380016466.01.T01:CDS | 40.0% | |
| GAAAAATGATCGAAGAAGCG+TGG | + | Chr3:83873295-83873314 | None:intergenic | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | - | Chr3:83873165-83873184 | MsG0380016466.01.T01:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | + | Chr3:83872117-83872136 | None:intergenic | 40.0% | |
| GCTTCCAGATGATTATCTTG+TGG | - | Chr3:83872197-83872216 | MsG0380016466.01.T01:CDS | 40.0% | |
| GGGCCTTTAGATAACATTGT+AGG | + | Chr3:83871960-83871979 | None:intergenic | 40.0% | |
| GTGTACACAAAACCCATGTA+TGG | + | Chr3:83873022-83873041 | None:intergenic | 40.0% | |
| GTTTCCGTGTGATACAAATG+TGG | + | Chr3:83873062-83873081 | None:intergenic | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | - | Chr3:83873006-83873025 | MsG0380016466.01.T01:intron | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | + | Chr3:83872440-83872459 | None:intergenic | 40.0% | |
| TTTGTATCACACGGAAACCT+AGG | - | Chr3:83873064-83873083 | MsG0380016466.01.T01:CDS | 40.0% | |
| ! | CACTTGATGGATGAACTCAT+CGG | + | Chr3:83872151-83872170 | None:intergenic | 40.0% |
| ! | GACATTGAGTGTGTCTTTTG+GGG | + | Chr3:83872003-83872022 | None:intergenic | 40.0% |
| ! | GAGACATTGAGTGTGTCTTT+TGG | + | Chr3:83872005-83872024 | None:intergenic | 40.0% |
| ! | TGTGGAAAAGCTTCTAGAAG+TGG | - | Chr3:83873183-83873202 | MsG0380016466.01.T01:CDS | 40.0% |
| !! | ACCCATGTATGGGTTGTTTT+CGG | + | Chr3:83873011-83873030 | None:intergenic | 40.0% |
| !!! | AGTGTGTCTTTTGGGGTTTT+AGG | + | Chr3:83871996-83872015 | None:intergenic | 40.0% |
| AAATGTGGCTCGCTCTTGAA+AGG | + | Chr3:83873047-83873066 | None:intergenic | 45.0% | |
| ATGGAGATTGGAGAAGCTTG+AGG | - | Chr3:83873387-83873406 | MsG0380016466.01.T01:CDS | 45.0% | |
| CATTGCCTACGTACCAAACA+TGG | - | Chr3:83872250-83872269 | MsG0380016466.01.T01:CDS | 45.0% | |
| CGAGCCACATTTGTATCACA+CGG | - | Chr3:83873055-83873074 | MsG0380016466.01.T01:CDS | 45.0% | |
| GTGGACTTGCACCTAGATTA+AGG | - | Chr3:83873449-83873468 | MsG0380016466.01.T01:CDS | 45.0% | |
| TATCACACGGAAACCTAGGT+AGG | - | Chr3:83873068-83873087 | MsG0380016466.01.T01:CDS | 45.0% | |
| TCCTCACATATGCATTCTCG+TGG | + | Chr3:83873162-83873181 | None:intergenic | 45.0% | |
| TCCTCCACAGGTTTAACCAA+TGG | + | Chr3:83872084-83872103 | None:intergenic | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | + | Chr3:83873084-83873103 | None:intergenic | 45.0% | |
| TGAGTTCATCCATCAAGTGC+AGG | - | Chr3:83872152-83872171 | MsG0380016466.01.T01:CDS | 45.0% | |
| TGGAGATTGGAGAAGCTTGA+GGG | - | Chr3:83873388-83873407 | MsG0380016466.01.T01:CDS | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | - | Chr3:83872305-83872324 | MsG0380016466.01.T01:CDS | 45.0% | |
| TTAAACCTGTGGAGGAATGC+TGG | - | Chr3:83872088-83872107 | MsG0380016466.01.T01:CDS | 45.0% | |
| ! | GTTGCCATTGGTTAAACCTG+TGG | - | Chr3:83872077-83872096 | MsG0380016466.01.T01:CDS | 45.0% |
| ! | TGATGGATGAACTCATCGGA+AGG | + | Chr3:83872147-83872166 | None:intergenic | 45.0% |
| !! | CTTCGATCATTTTTCTGCGG+TGG | - | Chr3:83873300-83873319 | MsG0380016466.01.T01:CDS | 45.0% |
| !!! | GTGCTGCATCATTTTGGCTA+TGG | + | Chr3:83873230-83873249 | None:intergenic | 45.0% |
| ACACGGAAACCTAGGTAGGT+TGG | - | Chr3:83873072-83873091 | MsG0380016466.01.T01:CDS | 50.0% | |
| CAACATTATGCACCCATGCG+TGG | - | Chr3:83871929-83871948 | MsG0380016466.01.T01:CDS | 50.0% | |
| CATGCACAAGAGTTCGTGTG+TGG | - | Chr3:83873430-83873449 | MsG0380016466.01.T01:CDS | 50.0% | |
| CTGGTTCAAGTCTCACACCA+TGG | - | Chr3:83872304-83872323 | MsG0380016466.01.T01:CDS | 50.0% | |
| CTTGAGGGTTTGACAAGCGA+AGG | - | Chr3:83873403-83873422 | MsG0380016466.01.T01:CDS | 50.0% | |
| GCCACGAGAATGCATATGTG+AGG | - | Chr3:83873158-83873177 | MsG0380016466.01.T01:CDS | 50.0% | |
| TCCGTCATGCATCAAGTGAG+CGG | + | Chr3:83873266-83873285 | None:intergenic | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | + | Chr3:83872132-83872151 | None:intergenic | 50.0% | |
| ! | GCCATTGGTTAAACCTGTGG+AGG | - | Chr3:83872080-83872099 | MsG0380016466.01.T01:CDS | 50.0% |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | - | Chr3:83873085-83873104 | MsG0380016466.01.T01:CDS | 50.0% |
| ! | GTCTCACACCATGGGCTATA+TGG | - | Chr3:83872313-83872332 | MsG0380016466.01.T01:CDS | 50.0% |
| !! | GGTTGGTAGCATGATCACTG+AGG | - | Chr3:83872224-83872243 | MsG0380016466.01.T01:CDS | 50.0% |
| ATTGTAGGGGAGTCCACGCA+TGG | + | Chr3:83871945-83871964 | None:intergenic | 55.0% | |
| CCCGCTCACTTGATGCATGA+CGG | - | Chr3:83873262-83873281 | MsG0380016466.01.T01:CDS | 55.0% | |
| CCGTCATGCATCAAGTGAGC+GGG | + | Chr3:83873265-83873284 | None:intergenic | 55.0% | |
| CTCAGCCGTTCGATCTCTCA+GGG | + | Chr3:83872178-83872197 | None:intergenic | 55.0% | |
| CTCGTACTTGCACGCGTATG+CGG | - | Chr3:83873112-83873131 | MsG0380016466.01.T01:CDS | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | + | Chr3:83872324-83872343 | None:intergenic | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | - | Chr3:83872325-83872344 | MsG0380016466.01.T01:CDS | 55.0% | |
| TCGTACTTGCACGCGTATGC+GGG | - | Chr3:83873113-83873132 | MsG0380016466.01.T01:CDS | 55.0% | |
| TCTAGAAGTGGATCCCACCG+AGG | - | Chr3:83873195-83873214 | MsG0380016466.01.T01:CDS | 55.0% | |
| TCTGCGGTGGCACAACGTAT+TGG | - | Chr3:83873313-83873332 | MsG0380016466.01.T01:CDS | 55.0% | |
| TTGTAGGGGAGTCCACGCAT+GGG | + | Chr3:83871944-83871963 | None:intergenic | 55.0% | |
| AGTGGATCCCACCGAGGCTA+TGG | - | Chr3:83873201-83873220 | MsG0380016466.01.T01:CDS | 60.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | + | Chr3:83873211-83873230 | None:intergenic | 60.0% | |
| CGCATACGCGTGCAAGTACG+AGG | + | Chr3:83873114-83873133 | None:intergenic | 60.0% | |
| CTCGTGGCGCTTCTCATCAG+CGG | + | Chr3:83873146-83873165 | None:intergenic | 60.0% | |
| CTCTCAGGGCCTGCACTTGA+TGG | + | Chr3:83872164-83872183 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | - | Chr3:83872285-83872304 | MsG0380016466.01.T01:CDS | 60.0% | |
| GCAGGCCCTGAGAGATCGAA+CGG | - | Chr3:83872170-83872189 | MsG0380016466.01.T01:CDS | 60.0% | |
| GCTCAGCCGTTCGATCTCTC+AGG | + | Chr3:83872179-83872198 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | + | Chr3:83873215-83873234 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | + | Chr3:83873212-83873231 | None:intergenic | 60.0% | |
| GGATCCCACCGAGGCTATGG+TGG | - | Chr3:83873204-83873223 | MsG0380016466.01.T01:CDS | 65.0% | |
| GGCTGCCAGCATTCCTCCAC+AGG | + | Chr3:83872096-83872115 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 83871919 | 83873555 | 83871919 | ID=MsG0380016466.01;Name=MsG0380016466.01 |
| Chr3 | mRNA | 83871919 | 83873555 | 83871919 | ID=MsG0380016466.01.T01;Parent=MsG0380016466.01;Name=MsG0380016466.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|2|0|366 |
| Chr3 | exon | 83873013 | 83873555 | 83873013 | ID=MsG0380016466.01.T01:exon:13568;Parent=MsG0380016466.01.T01 |
| Chr3 | exon | 83871919 | 83872476 | 83871919 | ID=MsG0380016466.01.T01:exon:13569;Parent=MsG0380016466.01.T01 |
| Chr3 | CDS | 83873013 | 83873555 | 83873013 | ID=MsG0380016466.01.T01:cds;Parent=MsG0380016466.01.T01 |
| Chr3 | CDS | 83871919 | 83872476 | 83871919 | ID=MsG0380016466.01.T01:cds;Parent=MsG0380016466.01.T01 |
| Gene Sequence |
| Protein sequence |
