AlfalfaGEDB | MsG0380015189.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015189.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015189.01.T01	XP_003600642.2	81.839	435	6	3	1	396	1	401	0	709

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015189.01.T01	G7J7Z9	81.839	435	6	3	1	396	1	401	0.0	709

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048258.01	MsG0380015189.01	0.802676	5.010003e-49	2.469062e-46
MsG0080048781.01	MsG0380015189.01	0.807289	5.435622e-50	3.015919e-47
MsG0080049140.01	MsG0380015189.01	0.808048	3.749709e-50	2.122064e-47
MsG0180000111.01	MsG0380015189.01	0.816034	6.808395e-52	4.771449e-49
MsG0180003485.01	MsG0380015189.01	0.810009	1.426233e-50	8.501463e-48
MsG0180004661.01	MsG0380015189.01	0.826696	2.353935e-54	2.223869e-51
MsG0180005002.01	MsG0380015189.01	0.813069	3.083886e-51	1.993730e-48
MsG0180006133.01	MsG0380015189.01	0.816165	6.364900e-52	4.476578e-49
MsG0280009783.01	MsG0380015189.01	0.810256	1.261466e-50	7.567680e-48
MsG0280009866.01	MsG0380015189.01	0.817221	3.689408e-52	2.670896e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015189.01.T01	MTR_3g064600	81.839	435	6	3	1	396	1	401	0.0	709
MsG0380015189.01.T01	MTR_3g073800	94.444	72	3	1	1	72	1	71	8.21e-41	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015189.01.T01	AT1G65900	50.340	441	132	10	5	396	6	408	3.18e-143	413
MsG0380015189.01.T01	AT1G65900	56.250	320	99	6	83	396	79	363	4.91e-124	363

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Find 74 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAGCCTATTATTTGA+AGG	0.452450	3:+66491388	MsG0380015189.01.T01:CDS
AAAGGAGTATCCTCTGAAAA+AGG	0.352650	3:-66489942	None:intergenic
AAATCATCCACATGGCACTA+TGG	0.442117	3:-66492505	None:intergenic
AAGGTTCCTAAAATAAGTCA+TGG	0.589506	3:-66492321	None:intergenic
AATGAAAGCATACCTTAAAA+AGG	0.326865	3:-66492340	None:intergenic
ACAAGCCTTAAGAACATATA+TGG	0.311667	3:+66490547	MsG0380015189.01.T01:CDS
ACAGTATGTGGAAGATGCAG+GGG	0.627644	3:+66491528	MsG0380015189.01.T01:intron
AGATCTGCTAATACCAACTG+AGG	0.642586	3:-66492266	None:intergenic
AGCAGTTTCCCAACCTCAGT+TGG	0.586144	3:+66492253	MsG0380015189.01.T01:CDS
AGCATTCTTAATGACTTTGA+AGG	0.407640	3:-66488251	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAAGCCTATTATTTGA+AGG	+	Chr3:66491388-66491407	MsG0380015189.01.T01:CDS	30.0%
AACTAAAGTTTCCTTCTTAG+AGG	+	Chr3:66489385-66489404	MsG0380015189.01.T01:intron	30.0%
AAGGTTCCTAAAATAAGTCA+TGG	-	Chr3:66492324-66492343	None:intergenic	30.0%
ACAAGCCTTAAGAACATATA+TGG	+	Chr3:66490547-66490566	MsG0380015189.01.T01:CDS	30.0%
AGCATTCTTAATGACTTTGA+AGG	-	Chr3:66488254-66488273	None:intergenic	30.0%
AGTAATGATGATCAATGAAG+GGG	+	Chr3:66490321-66490340	MsG0380015189.01.T01:intron	30.0%
ATATGTAAATGTCCTTCTGT+TGG	+	Chr3:66488928-66488947	MsG0380015189.01.T01:intron	30.0%
ATCTTTGTCGAGGAATTTAT+TGG	-	Chr3:66488801-66488820	None:intergenic	30.0%
CTCTTCCATATATGTTCTTA+AGG	-	Chr3:66490555-66490574	None:intergenic	30.0%
GAAACTAAGGTGAAATCATA+AGG	-	Chr3:66487882-66487901	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	66487868	66492670	66487868	ID=MsG0380015189.01;Name=MsG0380015189.01
Chr3	mRNA	66487868	66492670	66487868	ID=MsG0380015189.01.T01;Parent=MsG0380015189.01;Name=MsG0380015189.01.T01;_AED=0.49;_eAED=0.52;_QI=220\|0.66\|0.9\|1\|1\|1\|10\|146\|396
Chr3	exon	66487868	66488303	66487868	ID=MsG0380015189.01.T01:exon:22994;Parent=MsG0380015189.01.T01
Chr3	exon	66489750	66489968	66489750	ID=MsG0380015189.01.T01:exon:22995;Parent=MsG0380015189.01.T01
Chr3	exon	66490478	66490576	66490478	ID=MsG0380015189.01.T01:exon:22996;Parent=MsG0380015189.01.T01
Chr3	exon	66490929	66491000	66490929	ID=MsG0380015189.01.T01:exon:22997;Parent=MsG0380015189.01.T01
Chr3	exon	66491184	66491270	66491184	ID=MsG0380015189.01.T01:exon:22998;Parent=MsG0380015189.01.T01
Chr3	exon	66491371	66491409	66491371	ID=MsG0380015189.01.T01:exon:22999;Parent=MsG0380015189.01.T01
Chr3	exon	66491532	66491630	66491532	ID=MsG0380015189.01.T01:exon:23000;Parent=MsG0380015189.01.T01
Chr3	exon	66491811	66491973	66491811	ID=MsG0380015189.01.T01:exon:23001;Parent=MsG0380015189.01.T01
Chr3	exon	66492240	66492349	66492240	ID=MsG0380015189.01.T01:exon:23002;Parent=MsG0380015189.01.T01
Chr3	exon	66492438	66492670	66492438	ID=MsG0380015189.01.T01:exon:23003;Parent=MsG0380015189.01.T01
Chr3	five_prime_UTR	66487868	66488087	66487868	ID=MsG0380015189.01.T01:five_prime_utr;Parent=MsG0380015189.01.T01
Chr3	CDS	66488088	66488303	66488088	ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3	CDS	66489750	66489968	66489750	ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3	CDS	66490478	66490576	66490478	ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3	CDS	66490929	66491000	66490929	ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3	CDS	66491184	66491270	66491184	ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3	CDS	66491371	66491409	66491371	ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3	CDS	66491532	66491630	66491532	ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3	CDS	66491811	66491973	66491811	ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3	CDS	66492240	66492349	66492240	ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3	CDS	66492438	66492524	66492438	ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3	three_prime_UTR	66492525	66492670	66492525	ID=MsG0380015189.01.T01:three_prime_utr;Parent=MsG0380015189.01.T01

Gene Sequence

>MsG0380015189.01.T01

ATGGATTCAACTCATTGCTCTTGGTTCCAAGCTTTATTTTTCTTAGCATTAGTTTGGTTCTTTAATTGTGGAAGTGTTGATGGAGTGAGTACTAGCACAGTGAAAGTGGGCAACTTTTCTAAGGTAGAAGATGCTGTGAATTTTCATATTTACTATGGTCAGACCTTCAAAGTCATTAAGAATGCTGTTGATGGCCAGAGCTACCTTCTTCTCCAGCATTTAGGCTTACTGGAGAGCTTGAAAGGCATAACCTCAGACACAGTGACTTCTCCATGTGTGTTGAAATTGTATAAAGGAGGACAGATTGAAAAGTTGAACAAAAGTGATTATCAAATGCTTGCACAATTTTCTGCACACTTCTATAGTGACACTGATCAACAGCCAGCTTGCAATTTTGCAACTTCAGTTCCTTTTTCAGAGGATACTCCTTTGCAGGTGTCTATGTCGGAGCTTTTGCTTCATAGGTACTTATGTCAGCACATAAAGTCAAATAAGTCAATCGAAACAAGCCTTAAGAACATATATGGAAGAGTGAGAGCAGAATGGATCAAATTTATAGGAGCTTTTGCGAATGTTGAATCTAGAGCCAATCAAGTGTATACTACAGTTAATGAGAATTATTTGTGCTTGGCTGAAATCGCAAAATCTCGAACTTCATTCAAGCCAACTGTTGCTTGGATGAAATATAATAATGGTGTTTGGTCTTTTACAAAGGAAGCCTATTATTTGAAGTATGTGGAAGATGCAGGGGGAGAGATTTTGGATGCAAACAAGAACACTTACAATGTCTCTGATCCTGATGACTTGGAGGAATTGCATGCCCTCCTATGTACTGTGGAAGTAGTCATTGATGAAACATTAGCTTATGATCCAGTCAACTACACTATGTCAACATTTATCCAAAATCTAAATGTTGAAGATCGTTCTTGTTTTTCCTTTCTTACAAACACAAGCCTATGGAGATATGACAAACGGATTCAAAGTTCGTCTCTTGATTGGTACAATGGAGCAGTTTCCCAACCTCAGTTGGTATTAGCAGATCTTATTGAAGTTTTCTTTCCAACTGGAAATTACACCATGACTTATTTTAGGAACCTTTTTAAGGGAGAAACACCTATAAATATTGGTCCTGAAATGTGTGACAGGGACACATCCTCAACATTGGATCCTACCATAGTGCCATGTGGATGA

Protein sequence

>MsG0380015189.01.T01

MDSTHCSWFQALFFLALVWFFNCGSVDGVSTSTVKVGNFSKVEDAVNFHIYYGQTFKVIKNAVDGQSYLLLQHLGLLESLKGITSDTVTSPCVLKLYKGGQIEKLNKSDYQMLAQFSAHFYSDTDQQPACNFATSVPFSEDTPLQVSMSELLLHRYLCQHIKSNKSIETSLKNIYGRVRAEWIKFIGAFANVESRANQVYTTVNENYLCLAEIAKSRTSFKPTVAWMKYNNGVWSFTKEAYYLKYVEDAGGEILDANKNTYNVSDPDDLEELHALLCTVEVVIDETLAYDPVNYTMSTFIQNLNVEDRSCFSFLTNTSLWRYDKRIQSSSLDWYNGAVSQPQLVLADLIEVFFPTGNYTMTYFRNLFKGETPINIGPEMCDRDTSSTLDPTIVPCG*