AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015189.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015189.01.T01 MTR_3g064600 81.839 435 6 3 1 396 1 401 0.0 709
MsG0380015189.01.T01 MTR_3g073800 94.444 72 3 1 1 72 1 71 8.21e-41 140
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015189.01.T01 AT1G65900 50.340 441 132 10 5 396 6 408 3.18e-143 413
MsG0380015189.01.T01 AT1G65900 56.250 320 99 6 83 396 79 363 4.91e-124 363

Find 74 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTCAACATTTAGATTT+TGG 0.139325 3:-66491879 None:intergenic
TAATTAACTCATTCAGCTTA+TGG 0.203701 3:+66488069 MsG0380015189.01.T01:exon
TATCTTTCAAGTTCTAAATT+AGG 0.251881 3:+66492527 MsG0380015189.01.T01:three_prime_UTR
GTTTCATACCTTCAAATAAT+AGG 0.262313 3:-66491396 None:intergenic
CGAGTTTCTTTAGGTTTATT+CGG 0.267679 3:+66492627 MsG0380015189.01.T01:three_prime_UTR
TGAGCAGCATTTAGGCTTAC+TGG 0.271446 3:+66489743 MsG0380015189.01.T01:intron
TTAGTTTCAATCCATTTATC+AGG 0.305852 3:+66487894 MsG0380015189.01.T01:five_prime_UTR
TTCAGAGGATACTCCTTTGC+AGG 0.306271 3:+66489947 MsG0380015189.01.T01:CDS
ATTTCAGGACCAATATTTAT+AGG 0.308150 3:-66492447 None:intergenic
ACAAGCCTTAAGAACATATA+TGG 0.311667 3:+66490547 MsG0380015189.01.T01:CDS
AATGAAAGCATACCTTAAAA+AGG 0.326865 3:-66492340 None:intergenic
GCAGAATGGATCAAATTTAT+AGG 0.327799 3:+66490932 MsG0380015189.01.T01:CDS
CTCTTCCATATATGTTCTTA+AGG 0.330040 3:-66490552 None:intergenic
TACGATCAACGAGTTTCTTT+AGG 0.331527 3:+66492618 MsG0380015189.01.T01:three_prime_UTR
TGTTATCTTTGTAGGGTGTT+TGG 0.331912 3:+66491357 MsG0380015189.01.T01:intron
TTTAATTGTGGAAGTGTTGA+TGG 0.344046 3:+66488148 MsG0380015189.01.T01:CDS
GTGTCCCTGTCACACATTTC+AGG 0.348906 3:-66492462 None:intergenic
AAAGGAGTATCCTCTGAAAA+AGG 0.352650 3:-66489942 None:intergenic
GTCATTAAGAATGCTGTTGA+TGG 0.373808 3:+66488259 MsG0380015189.01.T01:CDS
GCAATTATCTGCATTCTTTG+TGG 0.393926 3:-66487935 None:intergenic
CATTCAAGCCAACTGTTGCT+TGG 0.399346 3:+66491233 MsG0380015189.01.T01:CDS
TACTGTAGTATACACTTGAT+TGG 0.399856 3:-66490981 None:intergenic
AGCATTCTTAATGACTTTGA+AGG 0.407640 3:-66488251 None:intergenic
TGGATTCAACTCATTGCTCT+TGG 0.410167 3:+66488089 MsG0380015189.01.T01:CDS
TAGGCTTGTGTTTGTAAGAA+AGG 0.415138 3:-66491914 None:intergenic
TGATAAATGGATTGAAACTA+AGG 0.418366 3:-66487892 None:intergenic
GGAGAAACACCTATAAATAT+TGG 0.424265 3:+66492438 MsG0380015189.01.T01:CDS
CGGATTCAAAGTTCGTCTCT+TGG 0.430422 3:+66491952 MsG0380015189.01.T01:CDS
CTGCTAATACCAACTGAGGT+TGG 0.432760 3:-66492262 None:intergenic
AAATCATCCACATGGCACTA+TGG 0.442117 3:-66492505 None:intergenic
TGCTAATACCAACTGAGGTT+GGG 0.447985 3:-66492261 None:intergenic
AAAGGAAGCCTATTATTTGA+AGG 0.452450 3:+66491388 MsG0380015189.01.T01:CDS
TGCAATTCCTCCAAGTCATC+AGG 0.461813 3:-66491595 None:intergenic
GAAACTAAGGTGAAATCATA+AGG 0.469841 3:-66487879 None:intergenic
CTCTGATCCTGATGACTTGG+AGG 0.481275 3:+66491588 MsG0380015189.01.T01:CDS
GTTAAGTTTCTTACCTGCAA+AGG 0.492265 3:-66489960 None:intergenic
TTCTTACAAACACAAGCCTA+TGG 0.497805 3:+66491917 MsG0380015189.01.T01:CDS
GAGTACTAGCACAGTGAAAG+TGG 0.499138 3:+66488174 MsG0380015189.01.T01:CDS
CCTGGAGAAGAAGGTAGCTC+TGG 0.503118 3:-66488282 None:intergenic
ATACAGTATGTGGAAGATGC+AGG 0.506685 3:+66491526 MsG0380015189.01.T01:intron
GGCTTACTGGAGAGCTTGAA+AGG 0.507335 3:+66489756 MsG0380015189.01.T01:CDS
TGTAAAGTACCTGGAGAAGA+AGG 0.518618 3:-66488291 None:intergenic
CACTTTGACAGAGAGCAGAA+TGG 0.519169 3:+66490918 MsG0380015189.01.T01:intron
GCCTATGGAGATATGACAAA+CGG 0.519757 3:+66491932 MsG0380015189.01.T01:CDS
TAATGAGAATTATTTGTGCT+TGG 0.527976 3:+66491186 MsG0380015189.01.T01:CDS
TGTCTCTGATCCTGATGACT+TGG 0.528012 3:+66491585 MsG0380015189.01.T01:CDS
CCAGAGCTACCTTCTTCTCC+AGG 0.538312 3:+66488282 MsG0380015189.01.T01:CDS
TACAGTATGTGGAAGATGCA+GGG 0.549358 3:+66491527 MsG0380015189.01.T01:intron
TTGGTCCTGAAATGTGTGAC+AGG 0.550850 3:+66492457 MsG0380015189.01.T01:CDS
TCCGTTTGTCATATCTCCAT+AGG 0.556280 3:-66491933 None:intergenic
CATCCACATGGCACTATGGT+AGG 0.556357 3:-66492501 None:intergenic
TTAGTTTGGTTCTTTAATTG+TGG 0.558641 3:+66488136 MsG0380015189.01.T01:CDS
TATTTCATCCAAGCAACAGT+TGG 0.564039 3:-66491241 None:intergenic
TTATACAATTTCAACACACA+TGG 0.571170 3:-66489804 None:intergenic
GTCATGGTGTAATTTCCAGT+TGG 0.573300 3:-66492305 None:intergenic
TGTGTGTTGAAATTGTATAA+AGG 0.573373 3:+66489807 MsG0380015189.01.T01:CDS
AGCAGTTTCCCAACCTCAGT+TGG 0.586144 3:+66492253 MsG0380015189.01.T01:CDS
GTTGACATAGTGTAGTTGAC+TGG 0.587690 3:-66491850 None:intergenic
GAAGTTGCAAAATTGCAAGC+TGG 0.587843 3:-66489915 None:intergenic
AAGGTTCCTAAAATAAGTCA+TGG 0.589506 3:-66492321 None:intergenic
CAGGGACACATCCTCAACAT+TGG 0.590217 3:+66492476 MsG0380015189.01.T01:CDS
TGGAGAAGTCACTGTGTCTG+AGG 0.592569 3:-66489784 None:intergenic
TAAGAACATATATGGAAGAG+TGG 0.616457 3:+66490555 MsG0380015189.01.T01:CDS
ACAGTATGTGGAAGATGCAG+GGG 0.627644 3:+66491528 MsG0380015189.01.T01:intron
GCATGTGAAGATTGGTACAA+TGG 0.631928 3:+66492230 MsG0380015189.01.T01:intron
AGATCTGCTAATACCAACTG+AGG 0.642586 3:-66492266 None:intergenic
GTCGTGTCAGGTGTCTATGT+CGG 0.644979 3:+66490468 MsG0380015189.01.T01:intron
AGTACTAGCACAGTGAAAGT+GGG 0.647319 3:+66488175 MsG0380015189.01.T01:CDS
TATGGTAGGATCCAATGTTG+AGG 0.658692 3:-66492487 None:intergenic
GTGTTGAAATTGTATAAAGG+AGG 0.695864 3:+66489810 MsG0380015189.01.T01:CDS
CAGTATGTGGAAGATGCAGG+GGG 0.700781 3:+66491529 MsG0380015189.01.T01:intron
TGAAAGATAAATCATCCACA+TGG 0.726809 3:-66492513 None:intergenic
TGGTCCTGAAATGTGTGACA+GGG 0.748927 3:+66492458 MsG0380015189.01.T01:CDS
GATCCTACCATAGTGCCATG+TGG 0.753347 3:+66492498 MsG0380015189.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATAAATATTAATTTA+TGG + Chr3:66491296-66491315 MsG0380015189.01.T01:intron 0.0%
!!! ATATATATATATATATATTT+TGG + Chr3:66492124-66492143 MsG0380015189.01.T01:intron 0.0%
!!! TATTAATTATTAATATTTTT+TGG - Chr3:66491284-66491303 None:intergenic 0.0%
!!! AAACAAAGAATTTTTTTTTA+TGG - Chr3:66490256-66490275 None:intergenic 10.0%
!!! AACAAAGAATTTTTTTTTAT+GGG - Chr3:66490255-66490274 None:intergenic 10.0%
!!! TATTACATTTTTTAACAAAT+TGG + Chr3:66491744-66491763 MsG0380015189.01.T01:intron 10.0%
!!! TTATTTTTTTATATAGAAAG+TGG + Chr3:66488046-66488065 MsG0380015189.01.T01:five_prime_UTR 10.0%
!!! TTTTTTGAAATTTTTGAAAT+AGG + Chr3:66492572-66492591 MsG0380015189.01.T01:three_prime_UTR 10.0%
!! AAAAAAAAATTGAATTCCTT+TGG - Chr3:66492374-66492393 None:intergenic 15.0%
!! ATAAAGTTTCAAAATTCAAA+AGG + Chr3:66490000-66490019 MsG0380015189.01.T01:intron 15.0%
!! ATAACATTGTTATAAAAGAT+AGG + Chr3:66488862-66488881 MsG0380015189.01.T01:intron 15.0%
!! TATAACAATGTTATAGTTAT+AGG - Chr3:66488856-66488875 None:intergenic 15.0%
!!! AAAAAATTTAGTCATACTTT+TGG + Chr3:66489246-66489265 MsG0380015189.01.T01:intron 15.0%
!!! TTTTTTTTCAATTATTGCTA+AGG + Chr3:66488325-66488344 MsG0380015189.01.T01:intron 15.0%
!! AAGTTATTTGTAATCAAAGA+TGG + Chr3:66488655-66488674 MsG0380015189.01.T01:intron 20.0%
!! AATTAATTGAATGAAGAAGT+TGG + Chr3:66490726-66490745 MsG0380015189.01.T01:intron 20.0%
!! ACAAATAACTTTGCTAATAA+AGG - Chr3:66488646-66488665 None:intergenic 20.0%
!! AGTTATTTGTAATCAAAGAT+GGG + Chr3:66488656-66488675 MsG0380015189.01.T01:intron 20.0%
!! ATAAGACATTCTTAAGTTTA+TGG - Chr3:66489273-66489292 None:intergenic 20.0%
!! GTTATACAAACAATTATACA+TGG - Chr3:66492205-66492224 None:intergenic 20.0%
!! TATCATCAATTCTTTCATAA+TGG - Chr3:66488514-66488533 None:intergenic 20.0%
!! TATTTACTCAATAGAAACAA+TGG - Chr3:66491773-66491792 None:intergenic 20.0%
!! TCATTGATGAATTATAAGTT+AGG - Chr3:66489021-66489040 None:intergenic 20.0%
!! TGGGGATTATATTTATAAAT+AGG + Chr3:66488948-66488967 MsG0380015189.01.T01:intron 20.0%
!!! AATTTATTTTTCGCTTTGTT+GGG - Chr3:66490686-66490705 None:intergenic 20.0%
!!! AGTTCATTCTGATTATTTTA+AGG - Chr3:66487989-66488008 None:intergenic 20.0%
!!! ATTCAGAGAAATATTCATTT+TGG + Chr3:66490703-66490722 MsG0380015189.01.T01:intron 20.0%
!!! GTGAATTTTCATATTTACTA+TGG + Chr3:66488223-66488242 MsG0380015189.01.T01:CDS 20.0%
!!! TAACTTTTTTTTCTGAAACA+TGG + Chr3:66491466-66491485 MsG0380015189.01.T01:intron 20.0%
!!! TATCTTTCAAGTTCTAAATT+AGG + Chr3:66492527-66492546 MsG0380015189.01.T01:three_prime_UTR 20.0%
!!! TATTTTTCTTAGCATTAGTT+TGG + Chr3:66488122-66488141 MsG0380015189.01.T01:CDS 20.0%
!!! TGAAATTCTTTCTTTTATCT+TGG - Chr3:66492063-66492082 None:intergenic 20.0%
!!! TGATTTTCTCAAATAATTAG+CGG + Chr3:66488395-66488414 MsG0380015189.01.T01:intron 20.0%
!!! TTATTTTAGGAACCTTTTTA+AGG + Chr3:66492328-66492347 MsG0380015189.01.T01:CDS 20.0%
!!! TTGTTTCATACTTTTTACTA+TGG + Chr3:66492019-66492038 MsG0380015189.01.T01:intron 20.0%
!!! TTTATTTTCATAAGCTTTCT+AGG - Chr3:66489587-66489606 None:intergenic 20.0%
! AAAAAATTGCATACAGTATG+TGG + Chr3:66491516-66491535 MsG0380015189.01.T01:intron 25.0%
! AAAGATCAATCACTGTTAAA+CGG + Chr3:66488815-66488834 MsG0380015189.01.T01:intron 25.0%
! AAATCATTAACGTGTAACAA+AGG + Chr3:66490068-66490087 MsG0380015189.01.T01:intron 25.0%
! AACTGAAATGTTATCTTTGT+AGG + Chr3:66491349-66491368 MsG0380015189.01.T01:intron 25.0%
! AATTCAGTGTAATTATGTGT+CGG - Chr3:66488372-66488391 None:intergenic 25.0%
! ACTGAAATGTTATCTTTGTA+GGG + Chr3:66491350-66491369 MsG0380015189.01.T01:intron 25.0%
! AGAATATGAGAATTAAAAGC+AGG - Chr3:66489709-66489728 None:intergenic 25.0%
! ATGCTAAGAAAAATAAAGCT+TGG - Chr3:66488117-66488136 None:intergenic 25.0%
! ATTTCAGGACCAATATTTAT+AGG - Chr3:66492450-66492469 None:intergenic 25.0%
! CAAGAAGCAAAAAAATCATT+AGG - Chr3:66489345-66489364 None:intergenic 25.0%
! CAATGCTAAAACTAATGATT+TGG + Chr3:66489190-66489209 MsG0380015189.01.T01:intron 25.0%
! CTGTTCAATGTTCAATTTAA+TGG - Chr3:66491656-66491675 None:intergenic 25.0%
! GTAGTAATTTAGTTATGCTA+TGG - Chr3:66491022-66491041 None:intergenic 25.0%
! GTTTCATACCTTCAAATAAT+AGG - Chr3:66491399-66491418 None:intergenic 25.0%
! TAATGAGAATTATTTGTGCT+TGG + Chr3:66491186-66491205 MsG0380015189.01.T01:CDS 25.0%
! TAATTAACTCATTCAGCTTA+TGG + Chr3:66488069-66488088 MsG0380015189.01.T01:exon 25.0%
! TAGCTTATGTTACTAACAAA+TGG + Chr3:66491146-66491165 MsG0380015189.01.T01:intron 25.0%
! TATTGTGTATGGAGAAAATT+TGG + Chr3:66488747-66488766 MsG0380015189.01.T01:intron 25.0%
! TGAATGAAGGTGAAAATTAT+CGG + Chr3:66490397-66490416 MsG0380015189.01.T01:intron 25.0%
! TGTGTGTTGAAATTGTATAA+AGG + Chr3:66489807-66489826 MsG0380015189.01.T01:CDS 25.0%
! TTAGTTTCAATCCATTTATC+AGG + Chr3:66487894-66487913 MsG0380015189.01.T01:five_prime_UTR 25.0%
! TTATACAATTTCAACACACA+TGG - Chr3:66489807-66489826 None:intergenic 25.0%
! TTGGTTATATTAGTTAGCTA+AGG - Chr3:66490794-66490813 None:intergenic 25.0%
!! AATGAAAGCATACCTTAAAA+AGG - Chr3:66492343-66492362 None:intergenic 25.0%
!! ATCAAGTTGTTTATTCAAAC+AGG - Chr3:66489492-66489511 None:intergenic 25.0%
!! GATCTTCAACATTTAGATTT+TGG - Chr3:66491882-66491901 None:intergenic 25.0%
!! GCTACTGATATAAGTTATTT+TGG + Chr3:66491488-66491507 MsG0380015189.01.T01:intron 25.0%
!! TAAATTTTGAACTCACACAT+AGG - Chr3:66491627-66491646 None:intergenic 25.0%
!! TCAAGTTGTTTATTCAAACA+GGG - Chr3:66489491-66489510 None:intergenic 25.0%
!!! AATGTTTTGGAAAGACAAAT+TGG - Chr3:66488605-66488624 None:intergenic 25.0%
!!! ATGTTTTGGAAAGACAAATT+GGG - Chr3:66488604-66488623 None:intergenic 25.0%
!!! ATTACACCATGACTTATTTT+AGG + Chr3:66492315-66492334 MsG0380015189.01.T01:CDS 25.0%
!!! GAATTTATTTTTCGCTTTGT+TGG - Chr3:66490687-66490706 None:intergenic 25.0%
!!! TGATAAATGGATTGAAACTA+AGG - Chr3:66487895-66487914 None:intergenic 25.0%
!!! TTAGTTTGGTTCTTTAATTG+TGG + Chr3:66488136-66488155 MsG0380015189.01.T01:CDS 25.0%
AAAGGAAGCCTATTATTTGA+AGG + Chr3:66491388-66491407 MsG0380015189.01.T01:CDS 30.0%
AACTAAAGTTTCCTTCTTAG+AGG + Chr3:66489385-66489404 MsG0380015189.01.T01:intron 30.0%
AAGGTTCCTAAAATAAGTCA+TGG - Chr3:66492324-66492343 None:intergenic 30.0%
ACAAGCCTTAAGAACATATA+TGG + Chr3:66490547-66490566 MsG0380015189.01.T01:CDS 30.0%
AGCATTCTTAATGACTTTGA+AGG - Chr3:66488254-66488273 None:intergenic 30.0%
AGTAATGATGATCAATGAAG+GGG + Chr3:66490321-66490340 MsG0380015189.01.T01:intron 30.0%
ATATGTAAATGTCCTTCTGT+TGG + Chr3:66488928-66488947 MsG0380015189.01.T01:intron 30.0%
ATCTTTGTCGAGGAATTTAT+TGG - Chr3:66488801-66488820 None:intergenic 30.0%
CTCTTCCATATATGTTCTTA+AGG - Chr3:66490555-66490574 None:intergenic 30.0%
GAAACTAAGGTGAAATCATA+AGG - Chr3:66487882-66487901 None:intergenic 30.0%
GAGTAATGATGATCAATGAA+GGG + Chr3:66490320-66490339 MsG0380015189.01.T01:intron 30.0%
GATAGTTGATCAATGAATGA+AGG + Chr3:66490384-66490403 MsG0380015189.01.T01:intron 30.0%
GCAGAATGGATCAAATTTAT+AGG + Chr3:66490932-66490951 MsG0380015189.01.T01:CDS 30.0%
GGAGAAACACCTATAAATAT+TGG + Chr3:66492438-66492457 MsG0380015189.01.T01:CDS 30.0%
GTGTTGAAATTGTATAAAGG+AGG + Chr3:66489810-66489829 MsG0380015189.01.T01:CDS 30.0%
TAAATATAATCCCCAACAGA+AGG - Chr3:66488943-66488962 None:intergenic 30.0%
TAAGAACATATATGGAAGAG+TGG + Chr3:66490555-66490574 MsG0380015189.01.T01:CDS 30.0%
TACTGTAGTATACACTTGAT+TGG - Chr3:66490984-66491003 None:intergenic 30.0%
TATGTAAATGTCCTTCTGTT+GGG + Chr3:66488929-66488948 MsG0380015189.01.T01:intron 30.0%
TGAAAGATAAATCATCCACA+TGG - Chr3:66492516-66492535 None:intergenic 30.0%
TGTATGGAGAAAATTTGGTT+TGG + Chr3:66488752-66488771 MsG0380015189.01.T01:intron 30.0%
! AAACCCTTTTGTCTTAATCA+TGG - Chr3:66489464-66489483 None:intergenic 30.0%
! ACTGTACCTAATCAATGTTT+TGG - Chr3:66488618-66488637 None:intergenic 30.0%
! AGTCAACGAGTCATATTTTT+AGG - Chr3:66491693-66491712 None:intergenic 30.0%
! ATTATTTCTCATGTAGACTG+TGG + Chr3:66491795-66491814 MsG0380015189.01.T01:intron 30.0%
! ATTGAAGTTTTCTTTCCAAC+TGG + Chr3:66492290-66492309 MsG0380015189.01.T01:CDS 30.0%
! CGAGTTTCTTTAGGTTTATT+CGG + Chr3:66492627-66492646 MsG0380015189.01.T01:three_prime_UTR 30.0%
! GATTAAGACAAAAGGGTTTT+AGG + Chr3:66489465-66489484 MsG0380015189.01.T01:intron 30.0%
! GTCTTTCCAAAACATTGATT+AGG + Chr3:66488609-66488628 MsG0380015189.01.T01:intron 30.0%
!! TTTAATTGTGGAAGTGTTGA+TGG + Chr3:66488148-66488167 MsG0380015189.01.T01:CDS 30.0%
AAAATCATTAGGCACAACAG+CGG - Chr3:66489334-66489353 None:intergenic 35.0%
AACTACAAGGATACAGAACA+TGG - Chr3:66491088-66491107 None:intergenic 35.0%
AACTTTCTGCATGTGAAGAT+TGG + Chr3:66492222-66492241 MsG0380015189.01.T01:intron 35.0%
AAGGTGAAAATTATCGGTGT+TGG + Chr3:66490403-66490422 MsG0380015189.01.T01:intron 35.0%
AGAGGAGAATCTACATTATG+TGG + Chr3:66488775-66488794 MsG0380015189.01.T01:intron 35.0%
AGCACAGAAATTCAACTACA+AGG - Chr3:66491101-66491120 None:intergenic 35.0%
AGTTGTGATTAGTAGCTAGT+TGG - Chr3:66490813-66490832 None:intergenic 35.0%
ATAACTCAAGGATTGCATCA+AGG + Chr3:66489059-66489078 MsG0380015189.01.T01:intron 35.0%
ATATGAACAGCTTGAGAAGT+TGG - Chr3:66492408-66492427 None:intergenic 35.0%
ATCAAAGATGGGAGAAAATC+TGG + Chr3:66488667-66488686 MsG0380015189.01.T01:intron 35.0%
ATGTAAATGTCCTTCTGTTG+GGG + Chr3:66488930-66488949 MsG0380015189.01.T01:intron 35.0%
ATGTCATAAGTTGTCTCTAC+AGG + Chr3:66490104-66490123 MsG0380015189.01.T01:intron 35.0%
CACATTGAACTGATTATGCA+TGG - Chr3:66489169-66489188 None:intergenic 35.0%
CAGGTACTTTACAAACAACT+TGG + Chr3:66488301-66488320 MsG0380015189.01.T01:intron 35.0%
CATCAATGAATTCCTCTCAT+TGG + Chr3:66489032-66489051 MsG0380015189.01.T01:intron 35.0%
CATGCATAATCAGTTCAATG+TGG + Chr3:66489167-66489186 MsG0380015189.01.T01:intron 35.0%
CTTTCATTGCTAAACACCAA+AGG + Chr3:66492355-66492374 MsG0380015189.01.T01:intron 35.0%
GCAATTATCTGCATTCTTTG+TGG - Chr3:66487938-66487957 None:intergenic 35.0%
GGAGTAATGATGATCAATGA+AGG + Chr3:66490319-66490338 MsG0380015189.01.T01:intron 35.0%
GTCATTAAGAATGCTGTTGA+TGG + Chr3:66488259-66488278 MsG0380015189.01.T01:CDS 35.0%
GTGCCATGATTAAGACAAAA+GGG + Chr3:66489458-66489477 MsG0380015189.01.T01:intron 35.0%
GTTAAGTTTCTTACCTGCAA+AGG - Chr3:66489963-66489982 None:intergenic 35.0%
TACGATCAACGAGTTTCTTT+AGG + Chr3:66492618-66492637 MsG0380015189.01.T01:three_prime_UTR 35.0%
TAGGCTTGTGTTTGTAAGAA+AGG - Chr3:66491917-66491936 None:intergenic 35.0%
TATTTCATCCAAGCAACAGT+TGG - Chr3:66491244-66491263 None:intergenic 35.0%
TCTTAATCATGGCACAAAAC+TGG - Chr3:66489453-66489472 None:intergenic 35.0%
TGAGGGTTATAAAGATGTGT+CGG + Chr3:66490298-66490317 MsG0380015189.01.T01:intron 35.0%
TGTGACACGCTTAATTCAAA+AGG - Chr3:66490175-66490194 None:intergenic 35.0%
TGTGCCATGATTAAGACAAA+AGG + Chr3:66489457-66489476 MsG0380015189.01.T01:intron 35.0%
TTCTTACAAACACAAGCCTA+TGG + Chr3:66491917-66491936 MsG0380015189.01.T01:CDS 35.0%
! AGTTAAAAGCATAGCTGCAT+AGG - Chr3:66490432-66490451 None:intergenic 35.0%
! ATTTTGAACTCACACATAGG+AGG - Chr3:66491624-66491643 None:intergenic 35.0%
! CAAATGGCTTGTAACTGTAT+AGG + Chr3:66491162-66491181 MsG0380015189.01.T01:intron 35.0%
! CAAGTTGTTTGTAAAGTACC+TGG - Chr3:66488303-66488322 None:intergenic 35.0%
! CTTTAGTTCCAAATTCCAAG+AGG - Chr3:66489373-66489392 None:intergenic 35.0%
! TGTTATCTTTGTAGGGTGTT+TGG + Chr3:66491357-66491376 MsG0380015189.01.T01:intron 35.0%
! TTTCAACAAAGAGAGCATGT+TGG + Chr3:66492078-66492097 MsG0380015189.01.T01:intron 35.0%
! TTTTGAACTCACACATAGGA+GGG - Chr3:66491623-66491642 None:intergenic 35.0%
!! AAAGGAGTATCCTCTGAAAA+AGG - Chr3:66489945-66489964 None:intergenic 35.0%
!! ATAGAAAAGAGTGTTCTACC+AGG + Chr3:66490619-66490638 MsG0380015189.01.T01:intron 35.0%
!! GTCGGTGTCACTATATAAAA+GGG - Chr3:66488354-66488373 None:intergenic 35.0%
!! TGATGTTTGTTGTGCTTACA+TGG + Chr3:66490038-66490057 MsG0380015189.01.T01:intron 35.0%
!! TGCAGCTTTTTCCTGATAAA+TGG - Chr3:66487908-66487927 None:intergenic 35.0%
!! TGTCGGTGTCACTATATAAA+AGG - Chr3:66488355-66488374 None:intergenic 35.0%
!! TTGTTTTGCCTCTTGGAATT+TGG + Chr3:66489362-66489381 MsG0380015189.01.T01:intron 35.0%
!!! AACTTCAGTTCCTTTTTCAG+AGG + Chr3:66489932-66489951 MsG0380015189.01.T01:CDS 35.0%
!!! TCTTGTTTTGAGCAGCATTT+AGG + Chr3:66489735-66489754 MsG0380015189.01.T01:intron 35.0%
AAATCATCCACATGGCACTA+TGG - Chr3:66492508-66492527 None:intergenic 40.0%
AAATCATTAGGCACAACAGC+GGG - Chr3:66489333-66489352 None:intergenic 40.0%
AACTAATGACCTGTTTCGAC+TGG - Chr3:66489686-66489705 None:intergenic 40.0%
ACAGTGATTGATCTTTGTCG+AGG - Chr3:66488811-66488830 None:intergenic 40.0%
ACATGTCAGACACATCTATG+AGG + Chr3:66490280-66490299 MsG0380015189.01.T01:intron 40.0%
AGATCTGCTAATACCAACTG+AGG - Chr3:66492269-66492288 None:intergenic 40.0%
AGCTATCTGTTAGCGAAACA+TGG + Chr3:66491422-66491441 MsG0380015189.01.T01:intron 40.0%
AGCTGTTCATATCATCTTGC+AGG + Chr3:66492416-66492435 MsG0380015189.01.T01:intron 40.0%
AGTACTAGCACAGTGAAAGT+GGG + Chr3:66488175-66488194 MsG0380015189.01.T01:CDS 40.0%
ATACAGTATGTGGAAGATGC+AGG + Chr3:66491526-66491545 MsG0380015189.01.T01:intron 40.0%
CATGTCAGACACATCTATGA+GGG + Chr3:66490281-66490300 MsG0380015189.01.T01:intron 40.0%
CGAATCTTGGCTATTGTGTA+TGG + Chr3:66488736-66488755 MsG0380015189.01.T01:intron 40.0%
CTCATTGGCAGAATAACTCA+AGG + Chr3:66489047-66489066 MsG0380015189.01.T01:intron 40.0%
CTGATTATGCATGGAATACC+AGG - Chr3:66489160-66489179 None:intergenic 40.0%
GAAGTTGCAAAATTGCAAGC+TGG - Chr3:66489918-66489937 None:intergenic 40.0%
GACTCAGTAACTATGAAGCA+CGG - Chr3:66488450-66488469 None:intergenic 40.0%
GATCAATCACTGTTAAACGG+TGG + Chr3:66488818-66488837 MsG0380015189.01.T01:intron 40.0%
GCATGTGAAGATTGGTACAA+TGG + Chr3:66492230-66492249 MsG0380015189.01.T01:intron 40.0%
GCCTATGGAGATATGACAAA+CGG + Chr3:66491932-66491951 MsG0380015189.01.T01:CDS 40.0%
GCGTACATATCTATGAAGCA+CGG + Chr3:66490146-66490165 MsG0380015189.01.T01:intron 40.0%
GCTGTTCATATCATCTTGCA+GGG + Chr3:66492417-66492436 MsG0380015189.01.T01:intron 40.0%
GCTTCATAGTTACTGAGTCA+TGG + Chr3:66488451-66488470 MsG0380015189.01.T01:intron 40.0%
GTCATGGTGTAATTTCCAGT+TGG - Chr3:66492308-66492327 None:intergenic 40.0%
GTTTCGCTAACAGATAGCTA+GGG - Chr3:66491421-66491440 None:intergenic 40.0%
TACAGTATGTGGAAGATGCA+GGG + Chr3:66491527-66491546 MsG0380015189.01.T01:intron 40.0%
TATGGTAGGATCCAATGTTG+AGG - Chr3:66492490-66492509 None:intergenic 40.0%
TCAGCAGAGAAGTTTGACAA+TGG - Chr3:66489124-66489143 None:intergenic 40.0%
TCCGTTTGTCATATCTCCAT+AGG - Chr3:66491936-66491955 None:intergenic 40.0%
TGAGTTATTCTGCCAATGAG+AGG - Chr3:66489047-66489066 None:intergenic 40.0%
TGCTAATACCAACTGAGGTT+GGG - Chr3:66492264-66492283 None:intergenic 40.0%
TGGATTCAACTCATTGCTCT+TGG + Chr3:66488089-66488108 MsG0380015189.01.T01:CDS 40.0%
TGTTTCGCTAACAGATAGCT+AGG - Chr3:66491422-66491441 None:intergenic 40.0%
TTATGCAAACCAGTCGAAAC+AGG + Chr3:66489674-66489693 MsG0380015189.01.T01:intron 40.0%
! GAAAGTGGGCAACTTTTCTA+AGG + Chr3:66488189-66488208 MsG0380015189.01.T01:CDS 40.0%
! GAAGATTCTCACCTCTAAGA+AGG - Chr3:66489399-66489418 None:intergenic 40.0%
! GCTGATACAGATTCTTTTCC+TGG + Chr3:66489139-66489158 MsG0380015189.01.T01:intron 40.0%
! TAGTTATGCTATGGACTGAG+TGG - Chr3:66491013-66491032 None:intergenic 40.0%
! TGTAAAGTACCTGGAGAAGA+AGG - Chr3:66488294-66488313 None:intergenic 40.0%
!! GGAGAAAATTTGGTTTGGAG+AGG + Chr3:66488757-66488776 MsG0380015189.01.T01:intron 40.0%
!! GGGTGTTTGGTCTTTTACAA+AGG + Chr3:66491370-66491389 MsG0380015189.01.T01:intron 40.0%
!!! TTGCTTCTTGTTTTGCCTCT+TGG + Chr3:66489355-66489374 MsG0380015189.01.T01:intron 40.0%
AATCATTAGGCACAACAGCG+GGG - Chr3:66489332-66489351 None:intergenic 45.0%
ACAGTATGTGGAAGATGCAG+GGG + Chr3:66491528-66491547 MsG0380015189.01.T01:intron 45.0%
AGGTACAAACACAGCTTAGC+AGG - Chr3:66489001-66489020 None:intergenic 45.0%
ATGAAGCACGGATACAGACA+CGG - Chr3:66488438-66488457 None:intergenic 45.0%
ATTCGAACCCTAGCCACTTA+CGG - Chr3:66488721-66488740 None:intergenic 45.0%
CACTTTGACAGAGAGCAGAA+TGG + Chr3:66490918-66490937 MsG0380015189.01.T01:intron 45.0%
CATTCAAGCCAACTGTTGCT+TGG + Chr3:66491233-66491252 MsG0380015189.01.T01:CDS 45.0%
CGGATTCAAAGTTCGTCTCT+TGG + Chr3:66491952-66491971 MsG0380015189.01.T01:CDS 45.0%
CTGCTAATACCAACTGAGGT+TGG - Chr3:66492265-66492284 None:intergenic 45.0%
GAGTACTAGCACAGTGAAAG+TGG + Chr3:66488174-66488193 MsG0380015189.01.T01:CDS 45.0%
TGAGCAGCATTTAGGCTTAC+TGG + Chr3:66489743-66489762 MsG0380015189.01.T01:intron 45.0%
TGCAATTCCTCCAAGTCATC+AGG - Chr3:66491598-66491617 None:intergenic 45.0%
TGGTCCTGAAATGTGTGACA+GGG + Chr3:66492458-66492477 MsG0380015189.01.T01:CDS 45.0%
TGTCTCTGATCCTGATGACT+TGG + Chr3:66491585-66491604 MsG0380015189.01.T01:CDS 45.0%
TTCAGAGGATACTCCTTTGC+AGG + Chr3:66489947-66489966 MsG0380015189.01.T01:CDS 45.0%
TTGGTCCTGAAATGTGTGAC+AGG + Chr3:66492457-66492476 MsG0380015189.01.T01:CDS 45.0%
! TGGGAGAAAATCTGGTTCCT+CGG + Chr3:66488675-66488694 MsG0380015189.01.T01:intron 45.0%
! TGTCGGAGCTTTTGCTTCAT+AGG + Chr3:66490485-66490504 MsG0380015189.01.T01:CDS 45.0%
!! TAGTGTTGATGTGTCGTGTC+AGG + Chr3:66490456-66490475 MsG0380015189.01.T01:intron 45.0%
AGCAGTTTCCCAACCTCAGT+TGG + Chr3:66492253-66492272 MsG0380015189.01.T01:CDS 50.0%
AGCGCAGAAAATCTGCAACC+TGG - Chr3:66490640-66490659 None:intergenic 50.0%
AGTGGCTAGGGTTCGAATCT+TGG + Chr3:66488723-66488742 MsG0380015189.01.T01:intron 50.0%
CAGGGACACATCCTCAACAT+TGG + Chr3:66492476-66492495 MsG0380015189.01.T01:CDS 50.0%
CAGTATGTGGAAGATGCAGG+GGG + Chr3:66491529-66491548 MsG0380015189.01.T01:intron 50.0%
CATCCACATGGCACTATGGT+AGG - Chr3:66492504-66492523 None:intergenic 50.0%
CTCCACCATGCTTCTCAACA+TGG - Chr3:66490663-66490682 None:intergenic 50.0%
GATCCTACCATAGTGCCATG+TGG + Chr3:66492498-66492517 MsG0380015189.01.T01:CDS 50.0%
GGCTTACTGGAGAGCTTGAA+AGG + Chr3:66489756-66489775 MsG0380015189.01.T01:CDS 50.0%
GTCGTGTCAGGTGTCTATGT+CGG + Chr3:66490468-66490487 MsG0380015189.01.T01:intron 50.0%
GTGTCCCTGTCACACATTTC+AGG - Chr3:66492465-66492484 None:intergenic 50.0%
TGGAGAAGTCACTGTGTCTG+AGG - Chr3:66489787-66489806 None:intergenic 50.0%
TTGGACACCGTAAGTGGCTA+GGG + Chr3:66488711-66488730 MsG0380015189.01.T01:intron 50.0%
! AGATGCAGGGGGAGAGATTT+TGG + Chr3:66491540-66491559 MsG0380015189.01.T01:CDS 50.0%
! CTCCATGTTGAGAAGCATGG+TGG + Chr3:66490658-66490677 MsG0380015189.01.T01:intron 50.0%
! CTCTGATCCTGATGACTTGG+AGG + Chr3:66491588-66491607 MsG0380015189.01.T01:CDS 50.0%
! TCTGGTTCCTCGGAGTAGTA+AGG + Chr3:66488685-66488704 MsG0380015189.01.T01:intron 50.0%
AGGCACTTGGACACCGTAAG+TGG + Chr3:66488705-66488724 MsG0380015189.01.T01:intron 55.0%
CCAAGTGCCTTACTACTCCG+AGG - Chr3:66488695-66488714 None:intergenic 55.0%
CCAGAGCTACCTTCTTCTCC+AGG + Chr3:66488282-66488301 MsG0380015189.01.T01:CDS 55.0%
CCTGGAGAAGAAGGTAGCTC+TGG - Chr3:66488285-66488304 None:intergenic 55.0%
CTTGGACACCGTAAGTGGCT+AGG + Chr3:66488710-66488729 MsG0380015189.01.T01:intron 55.0%
GCGCTCCATGTTGAGAAGCA+TGG + Chr3:66490655-66490674 MsG0380015189.01.T01:intron 55.0%
! CCTCGGAGTAGTAAGGCACT+TGG + Chr3:66488692-66488711 MsG0380015189.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 66487868 66492670 66487868 ID=MsG0380015189.01;Name=MsG0380015189.01
Chr3 mRNA 66487868 66492670 66487868 ID=MsG0380015189.01.T01;Parent=MsG0380015189.01;Name=MsG0380015189.01.T01;_AED=0.49;_eAED=0.52;_QI=220|0.66|0.9|1|1|1|10|146|396
Chr3 exon 66487868 66488303 66487868 ID=MsG0380015189.01.T01:exon:22994;Parent=MsG0380015189.01.T01
Chr3 exon 66489750 66489968 66489750 ID=MsG0380015189.01.T01:exon:22995;Parent=MsG0380015189.01.T01
Chr3 exon 66490478 66490576 66490478 ID=MsG0380015189.01.T01:exon:22996;Parent=MsG0380015189.01.T01
Chr3 exon 66490929 66491000 66490929 ID=MsG0380015189.01.T01:exon:22997;Parent=MsG0380015189.01.T01
Chr3 exon 66491184 66491270 66491184 ID=MsG0380015189.01.T01:exon:22998;Parent=MsG0380015189.01.T01
Chr3 exon 66491371 66491409 66491371 ID=MsG0380015189.01.T01:exon:22999;Parent=MsG0380015189.01.T01
Chr3 exon 66491532 66491630 66491532 ID=MsG0380015189.01.T01:exon:23000;Parent=MsG0380015189.01.T01
Chr3 exon 66491811 66491973 66491811 ID=MsG0380015189.01.T01:exon:23001;Parent=MsG0380015189.01.T01
Chr3 exon 66492240 66492349 66492240 ID=MsG0380015189.01.T01:exon:23002;Parent=MsG0380015189.01.T01
Chr3 exon 66492438 66492670 66492438 ID=MsG0380015189.01.T01:exon:23003;Parent=MsG0380015189.01.T01
Chr3 five_prime_UTR 66487868 66488087 66487868 ID=MsG0380015189.01.T01:five_prime_utr;Parent=MsG0380015189.01.T01
Chr3 CDS 66488088 66488303 66488088 ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3 CDS 66489750 66489968 66489750 ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3 CDS 66490478 66490576 66490478 ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3 CDS 66490929 66491000 66490929 ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3 CDS 66491184 66491270 66491184 ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3 CDS 66491371 66491409 66491371 ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3 CDS 66491532 66491630 66491532 ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3 CDS 66491811 66491973 66491811 ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3 CDS 66492240 66492349 66492240 ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3 CDS 66492438 66492524 66492438 ID=MsG0380015189.01.T01:cds;Parent=MsG0380015189.01.T01
Chr3 three_prime_UTR 66492525 66492670 66492525 ID=MsG0380015189.01.T01:three_prime_utr;Parent=MsG0380015189.01.T01
Gene Sequence

>MsG0380015189.01.T01

ATGGATTCAACTCATTGCTCTTGGTTCCAAGCTTTATTTTTCTTAGCATTAGTTTGGTTCTTTAATTGTGGAAGTGTTGATGGAGTGAGTACTAGCACAGTGAAAGTGGGCAACTTTTCTAAGGTAGAAGATGCTGTGAATTTTCATATTTACTATGGTCAGACCTTCAAAGTCATTAAGAATGCTGTTGATGGCCAGAGCTACCTTCTTCTCCAGCATTTAGGCTTACTGGAGAGCTTGAAAGGCATAACCTCAGACACAGTGACTTCTCCATGTGTGTTGAAATTGTATAAAGGAGGACAGATTGAAAAGTTGAACAAAAGTGATTATCAAATGCTTGCACAATTTTCTGCACACTTCTATAGTGACACTGATCAACAGCCAGCTTGCAATTTTGCAACTTCAGTTCCTTTTTCAGAGGATACTCCTTTGCAGGTGTCTATGTCGGAGCTTTTGCTTCATAGGTACTTATGTCAGCACATAAAGTCAAATAAGTCAATCGAAACAAGCCTTAAGAACATATATGGAAGAGTGAGAGCAGAATGGATCAAATTTATAGGAGCTTTTGCGAATGTTGAATCTAGAGCCAATCAAGTGTATACTACAGTTAATGAGAATTATTTGTGCTTGGCTGAAATCGCAAAATCTCGAACTTCATTCAAGCCAACTGTTGCTTGGATGAAATATAATAATGGTGTTTGGTCTTTTACAAAGGAAGCCTATTATTTGAAGTATGTGGAAGATGCAGGGGGAGAGATTTTGGATGCAAACAAGAACACTTACAATGTCTCTGATCCTGATGACTTGGAGGAATTGCATGCCCTCCTATGTACTGTGGAAGTAGTCATTGATGAAACATTAGCTTATGATCCAGTCAACTACACTATGTCAACATTTATCCAAAATCTAAATGTTGAAGATCGTTCTTGTTTTTCCTTTCTTACAAACACAAGCCTATGGAGATATGACAAACGGATTCAAAGTTCGTCTCTTGATTGGTACAATGGAGCAGTTTCCCAACCTCAGTTGGTATTAGCAGATCTTATTGAAGTTTTCTTTCCAACTGGAAATTACACCATGACTTATTTTAGGAACCTTTTTAAGGGAGAAACACCTATAAATATTGGTCCTGAAATGTGTGACAGGGACACATCCTCAACATTGGATCCTACCATAGTGCCATGTGGATGA
Protein sequence

>MsG0380015189.01.T01

MDSTHCSWFQALFFLALVWFFNCGSVDGVSTSTVKVGNFSKVEDAVNFHIYYGQTFKVIKNAVDGQSYLLLQHLGLLESLKGITSDTVTSPCVLKLYKGGQIEKLNKSDYQMLAQFSAHFYSDTDQQPACNFATSVPFSEDTPLQVSMSELLLHRYLCQHIKSNKSIETSLKNIYGRVRAEWIKFIGAFANVESRANQVYTTVNENYLCLAEIAKSRTSFKPTVAWMKYNNGVWSFTKEAYYLKYVEDAGGEILDANKNTYNVSDPDDLEELHALLCTVEVVIDETLAYDPVNYTMSTFIQNLNVEDRSCFSFLTNTSLWRYDKRIQSSSLDWYNGAVSQPQLVLADLIEVFFPTGNYTMTYFRNLFKGETPINIGPEMCDRDTSSTLDPTIVPCG*