AlfalfaGEDB | MsG0580026142.01

M. sativa cultivar ZhongmuNo.1 / MsG0580026142.01

KEGG: K02608
GO: GO:0005664 GO:0006260
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026142.01.T01	XP_013448285.1	94.118	204	12	0	6	209	84	287	3.07E-137	395

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026142.01.T01	Q9ZVH3	60.488	205	77	3	3	207	81	281	5.84E-80	243

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026142.01.T01	A0A072TY04	94.118	204	12	0	6	209	84	287	1.47e-137	395

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048781.01	MsG0580026142.01	0.833917	4.048390e-56	4.730341e-53
MsG0080049140.01	MsG0580026142.01	0.809050	2.291672e-50	1.331629e-47
MsG0180000710.01	MsG0580026142.01	0.809584	1.760683e-50	1.037819e-47
MsG0180003485.01	MsG0580026142.01	0.819398	1.185915e-52	9.115562e-50
MsG0180003658.01	MsG0580026142.01	0.804412	2.186783e-49	1.126736e-46
MsG0180003796.01	MsG0580026142.01	0.830189	3.377479e-55	3.533173e-52
MsG0180005435.01	MsG0580026142.01	0.813782	2.150175e-51	1.417292e-48
MsG0180006133.01	MsG0580026142.01	0.835481	1.636748e-56	2.004085e-53
MsG0280006540.01	MsG0580026142.01	0.854078	1.563573e-61	3.451516e-58
MsG0280007359.01	MsG0580026142.01	0.832846	7.486643e-56	8.470075e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026142.01.T01	MTR_7g039370	94.118	204	12	0	6	209	84	287	3.72e-141	395
MsG0580026142.01.T01	MTR_5g040250	93.627	204	13	0	6	209	84	287	3.33e-140	393

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026142.01.T01	AT1G26840	60.488	205	77	3	3	207	81	281	5.95e-81	243

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Find 51 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGGCTGAGGATGG+TGG	0.614741	5:+31297614	MsG0580026142.01.T01:CDS
AAACGCGTGATTATGAGAAA+TGG	0.453232	5:+31298807	MsG0580026142.01.T01:CDS
AAAGAAGTGAAGACCAATAG+AGG	0.499335	5:+31297446	MsG0580026142.01.T01:CDS
AAAGCAACAGCCATGAAAAC+TGG	0.380208	5:-31297072	None:intergenic
AAAGGGATATATACCTCTAT+TGG	0.375362	5:-31297459	None:intergenic
AAGTTGAGGCGAGTCTGTTT+TGG	0.386907	5:-31298990	None:intergenic
AAGTTGGAGGCGATGTAAGA+TGG	0.537833	5:+31299038	MsG0580026142.01.T01:exon
AATAAACAAGACAACAAAGA+AGG	0.560557	5:+31298851	MsG0580026142.01.T01:CDS
ACATAGTCTTGAAGATGAAA+TGG	0.441804	5:-31299446	None:intergenic
ACCAAGCAAAAGAAAGGCTG+AGG	0.575748	5:+31297607	MsG0580026142.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGCCTATTGCATACTT+TGG	+	Chr5:31298505-31298524	MsG0580026142.01.T01:intron	30.0%
AAAGGGATATATACCTCTAT+TGG	-	Chr5:31297462-31297481	None:intergenic	30.0%
ATTAAGCTGATTGAACTTTG+TGG	+	Chr5:31297223-31297242	MsG0580026142.01.T01:CDS	30.0%
GCAATACATAAAACTGGAAA+AGG	-	Chr5:31297480-31297499	None:intergenic	30.0%
GGTTAATGTGTAGTGATTAT+AGG	+	Chr5:31298085-31298104	MsG0580026142.01.T01:intron	30.0%
GTATTTATCCAACAAAGGTT+GGG	+	Chr5:31299379-31299398	MsG0580026142.01.T01:three_prime_UTR	30.0%
TGTATTTATCCAACAAAGGT+TGG	+	Chr5:31299378-31299397	MsG0580026142.01.T01:three_prime_UTR	30.0%
TTATAGACCAGCTTTCATAT+TGG	+	Chr5:31297803-31297822	MsG0580026142.01.T01:intron	30.0%
AAACGCGTGATTATGAGAAA+TGG	+	Chr5:31298807-31298826	MsG0580026142.01.T01:CDS	35.0%
AAAGAAGTGAAGACCAATAG+AGG	+	Chr5:31297446-31297465	MsG0580026142.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	31296784	31299461	31296784	ID=MsG0580026142.01;Name=MsG0580026142.01
Chr5	mRNA	31296784	31299461	31296784	ID=MsG0580026142.01.T01;Parent=MsG0580026142.01;Name=MsG0580026142.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|1\|0.85\|1\|1\|1\|7\|406\|209
Chr5	exon	31296784	31296902	31296784	ID=MsG0580026142.01.T01:exon:13044;Parent=MsG0580026142.01.T01
Chr5	exon	31297008	31297119	31297008	ID=MsG0580026142.01.T01:exon:13045;Parent=MsG0580026142.01.T01
Chr5	exon	31297208	31297270	31297208	ID=MsG0580026142.01.T01:exon:13046;Parent=MsG0580026142.01.T01
Chr5	exon	31297380	31297467	31297380	ID=MsG0580026142.01.T01:exon:13047;Parent=MsG0580026142.01.T01
Chr5	exon	31297591	31297661	31297591	ID=MsG0580026142.01.T01:exon:13048;Parent=MsG0580026142.01.T01
Chr5	exon	31298776	31298872	31298776	ID=MsG0580026142.01.T01:exon:13049;Parent=MsG0580026142.01.T01
Chr5	exon	31298976	31299461	31298976	ID=MsG0580026142.01.T01:exon:13050;Parent=MsG0580026142.01.T01
Chr5	CDS	31296784	31296902	31296784	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31297008	31297119	31297008	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31297208	31297270	31297208	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31297380	31297467	31297380	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31297591	31297661	31297591	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31298776	31298872	31298776	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31298976	31299055	31298976	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	three_prime_UTR	31299056	31299461	31299056	ID=MsG0580026142.01.T01:three_prime_utr;Parent=MsG0580026142.01.T01

Gene Sequence

>MsG0580026142.01.T01

TTGGTTTTTTATTTTGTTAATGATGAATTTGTGTTTAGGTTGAAGCTTGATGTGAGGGAATTGGCGATTCAATTCGGGTGTGTTCGGATTATACCGTTTGTTCGCGATGGTCTCAAGCTTTATAAGGAACGGTTTATTTCGTCGTTGCCGGCTGCTCGTCGTGCAAGTGCTGATTTTACTCGTCCAGTTTTCATGGCTGTTGCTTTTTATTTATGTTCAAAGAAACATAAGTTGAAAGTTGATAAGATTAAGCTGATTGAACTTTGTGGTACATCTGAATCTGAATTTTCTAGTGTTTCTACTACTATGAAAGACTTGTGCCATGATGTTTTTGGGGTAGCTAAAGAAAAGAAAGATCCTAAAGAAGTGAAGACCAATAGAGATTTGCTTGATGTCTTACCAAGCAAAAGAAAGGCTGAGGATGGTGGCTATTTGTCTGATGATGGGGCAGAGGTTTCAAGTTATAAAAAAAGGAAACAGATGGAAACGCGTGATTATGAGAAATGGAAATCTTCAGTCCTTACATCCAATAAACAAGACAACAAAGAAGTGCCCAGCAAGAAACCAAAACAGACTCGCCTCAACTTCGTCAAGGAAGCTCCTGAGACCCAGAAGTTGGAGGCGATGTAA

Protein sequence

>MsG0580026142.01.T01

LVFYFVNDEFVFRLKLDVRELAIQFGCVRIIPFVRDGLKLYKERFISSLPAARRASADFTRPVFMAVAFYLCSKKHKLKVDKIKLIELCGTSESEFSSVSTTMKDLCHDVFGVAKEKKDPKEVKTNRDLLDVLPSKRKAEDGGYLSDDGAEVSSYKKRKQMETRDYEKWKSSVLTSNKQDNKEVPSKKPKQTRLNFVKEAPETQKLEAM*