AlfalfaGEDB | MsG0580026142.01

M. sativa cultivar ZhongmuNo.1 / MsG0580026142.01

KEGG: K02608
GO: GO:0005664 GO:0006260
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026142.01.T01	XP_013448285.1	94.118	204	12	0	6	209	84	287	3.07E-137	395

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026142.01.T01	Q9ZVH3	60.488	205	77	3	3	207	81	281	5.84E-80	243

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026142.01.T01	A0A072TY04	94.118	204	12	0	6	209	84	287	1.47e-137	395

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048781.01	MsG0580026142.01	0.833917	4.048390e-56	4.730341e-53
MsG0080049140.01	MsG0580026142.01	0.809050	2.291672e-50	1.331629e-47
MsG0180000710.01	MsG0580026142.01	0.809584	1.760683e-50	1.037819e-47
MsG0180003485.01	MsG0580026142.01	0.819398	1.185915e-52	9.115562e-50
MsG0180003658.01	MsG0580026142.01	0.804412	2.186783e-49	1.126736e-46
MsG0180003796.01	MsG0580026142.01	0.830189	3.377479e-55	3.533173e-52
MsG0180005435.01	MsG0580026142.01	0.813782	2.150175e-51	1.417292e-48
MsG0180006133.01	MsG0580026142.01	0.835481	1.636748e-56	2.004085e-53
MsG0480018526.01	MsG0580026142.01	0.816783	4.628854e-52	3.311065e-49
MsG0480018785.01	MsG0580026142.01	0.805151	1.533001e-49	8.050933e-47
MsG0480021013.01	MsG0580026142.01	0.810194	1.301120e-50	7.792441e-48
MsG0480022784.01	MsG0580026142.01	0.801307	9.579789e-49	4.559849e-46
MsG0480022982.01	MsG0580026142.01	0.820927	5.294643e-53	4.246871e-50
MsG0480023262.01	MsG0580026142.01	0.843495	1.353290e-58	2.121075e-55
MsG0480023296.01	MsG0580026142.01	0.833806	4.316546e-56	5.026338e-53
MsG0480023672.01	MsG0580026142.01	0.833244	5.961666e-56	6.825818e-53
MsG0580024489.01	MsG0580026142.01	0.800678	1.287614e-48	6.032115e-46
MsG0580024787.01	MsG0580026142.01	0.822999	1.753985e-53	1.491677e-50
MsG0580024813.01	MsG0580026142.01	0.840148	1.035079e-57	1.461317e-54
MsG0580024954.01	MsG0580026142.01	0.819542	1.099414e-52	8.485139e-50
MsG0580025177.01	MsG0580026142.01	0.821293	4.361200e-53	3.533722e-50
MsG0580025186.01	MsG0580026142.01	0.808057	3.733410e-50	2.113305e-47
MsG0380016091.01	MsG0580026142.01	0.815154	1.069214e-51	7.314152e-49
MsG0380016225.01	MsG0580026142.01	0.811654	6.283936e-51	3.911734e-48
MsG0380017361.01	MsG0580026142.01	0.829382	5.311178e-55	5.427430e-52
MsG0580026142.01	MsG0580028756.01	0.839972	1.150616e-57	1.615610e-54
MsG0580026142.01	MsG0580029261.01	0.831877	1.300777e-55	1.430253e-52
MsG0580026142.01	MsG0580029591.01	0.824800	6.632886e-54	5.937339e-51
MsG0580026142.01	MsG0680031701.01	0.817367	3.421177e-52	2.486628e-49
MsG0580026142.01	MsG0680032773.01	0.826398	2.772607e-54	2.597307e-51
MsG0580026142.01	MsG0680035878.01	0.824313	8.638561e-54	7.623636e-51
MsG0580026142.01	MsG0780036941.01	0.810228	1.279612e-50	7.670452e-48
MsG0580026142.01	MsG0780037741.01	0.830109	3.534375e-55	3.688368e-52
MsG0580026142.01	MsG0780039861.01	0.840719	7.339130e-58	1.054593e-54
MsG0580026142.01	MsG0780040364.01	0.801862	7.368390e-49	3.557023e-46
MsG0580026142.01	MsG0780040620.01	0.848463	6.034022e-60	1.108357e-56
MsG0580026142.01	MsG0780040641.01	0.803027	4.239907e-49	2.108239e-46
MsG0580026142.01	MsG0780041132.01	0.809456	1.875610e-50	1.101738e-47
MsG0580026142.01	MsG0780041141.01	0.810848	9.399259e-51	5.728281e-48
MsG0580026142.01	MsG0780041143.01	0.858469	8.065093e-63	2.060517e-59
MsG0580026142.01	MsG0780041359.01	0.812002	5.277514e-51	3.316187e-48
MsG0580026142.01	MsG0880044835.01	0.805361	1.385362e-49	7.314965e-47
MsG0580026142.01	MsG0880045612.01	0.819265	1.272086e-52	9.741902e-50
MsG0580026142.01	MsG0880046208.01	0.800561	1.360586e-48	6.354929e-46
MsG0580026142.01	MsG0880046646.01	0.803788	2.948888e-49	1.495316e-46
MsG0580026142.01	MsG0880046885.01	0.825590	4.315631e-54	3.950625e-51
MsG0580026142.01	MsG0880047649.01	0.809137	2.195710e-50	1.278887e-47
MsG0280006540.01	MsG0580026142.01	0.854078	1.563573e-61	3.451516e-58
MsG0280007359.01	MsG0580026142.01	0.832846	7.486643e-56	8.470075e-53
MsG0280009752.01	MsG0580026142.01	0.816865	4.436280e-52	3.180496e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026142.01.T01	MTR_7g039370	94.118	204	12	0	6	209	84	287	3.72e-141	395
MsG0580026142.01.T01	MTR_5g040250	93.627	204	13	0	6	209	84	287	3.33e-140	393

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580026142.01.T01	AT1G26840	60.488	205	77	3	3	207	81	281	5.95e-81	243

Find 51 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCTTTGTTGTCTTGTTTAT+TGG	0.082347	5:-31298849	None:intergenic
CTTACATCGCCTCCAACTTC+TGG	0.194165	5:-31299034	None:intergenic
CTATTGGTCTTCACTTCTTT+AGG	0.253592	5:-31297443	None:intergenic
TCTTGTTGTTTGTAGTTATA+AGG	0.256528	5:+31296993	MsG0580026142.01.T01:intron
CGATTCAATTCGGGTGTGTT+CGG	0.334549	5:+31296848	MsG0580026142.01.T01:CDS
ACGGTTTATTTCGTCGTTGC+CGG	0.352924	5:+31297017	MsG0580026142.01.T01:CDS
CTTGCTATAGATTAATGCTT+TGG	0.354568	5:-31299236	None:intergenic
GGTGGCTATTTGTCTGATGA+TGG	0.360466	5:+31297632	MsG0580026142.01.T01:CDS
AGGGAATTGGCGATTCAATT+CGG	0.375252	5:+31296838	MsG0580026142.01.T01:CDS
AAAGGGATATATACCTCTAT+TGG	0.375362	5:-31297459	None:intergenic
AAAGCAACAGCCATGAAAAC+TGG	0.380208	5:-31297072	None:intergenic
AAGTTGAGGCGAGTCTGTTT+TGG	0.386907	5:-31298990	None:intergenic
GGGAATTGGCGATTCAATTC+GGG	0.405730	5:+31296839	MsG0580026142.01.T01:CDS
GCCTCCAACTTCTGGGTCTC+AGG	0.409294	5:-31299026	None:intergenic
TGTCTTGTTTATTGGATGTA+AGG	0.411006	5:-31298841	None:intergenic
TTACATCGCCTCCAACTTCT+GGG	0.428496	5:-31299033	None:intergenic
TTAATGATGAATTTGTGTTT+AGG	0.428807	5:+31296800	MsG0580026142.01.T01:CDS
TATAAAACAAAGCATGAAGA+TGG	0.434193	5:+31299123	MsG0580026142.01.T01:three_prime_UTR
TGTATTTATCCAACAAAGGT+TGG	0.436617	5:+31299378	MsG0580026142.01.T01:three_prime_UTR
AGCATTGTCCCAACCTTTGT+TGG	0.437388	5:-31299387	None:intergenic
ATTAAGCTGATTGAACTTTG+TGG	0.438612	5:+31297223	MsG0580026142.01.T01:CDS
ACATAGTCTTGAAGATGAAA+TGG	0.441804	5:-31299446	None:intergenic
GTATTTATCCAACAAAGGTT+GGG	0.442192	5:+31299379	MsG0580026142.01.T01:three_prime_UTR
AAACGCGTGATTATGAGAAA+TGG	0.453232	5:+31298807	MsG0580026142.01.T01:CDS
GAAGCTTGATGTGAGGGAAT+TGG	0.468324	5:+31296825	MsG0580026142.01.T01:CDS
TTTATGTTCAAAGAAACATA+AGG	0.489147	5:+31297098	MsG0580026142.01.T01:CDS
TTGAGACCATCGCGAACAAA+CGG	0.489708	5:-31296877	None:intergenic
AGCTCCTGAGACCCAGAAGT+TGG	0.494754	5:+31299022	MsG0580026142.01.T01:CDS
AAAGAAGTGAAGACCAATAG+AGG	0.499335	5:+31297446	MsG0580026142.01.T01:CDS
GTGGCTATTTGTCTGATGAT+GGG	0.505484	5:+31297633	MsG0580026142.01.T01:CDS
GCACTTGCACGACGAGCAGC+CGG	0.513474	5:-31297036	None:intergenic
CTTCTCTTATGTTGCGACAC+AGG	0.520003	5:-31299153	None:intergenic
AAGTTGGAGGCGATGTAAGA+TGG	0.537833	5:+31299038	MsG0580026142.01.T01:exon
TGTCTTACCAAGCAAAAGAA+AGG	0.541434	5:+31297601	MsG0580026142.01.T01:CDS
TCCTGAGACCCAGAAGTTGG+AGG	0.558960	5:+31299025	MsG0580026142.01.T01:CDS
TAGGTTGAAGCTTGATGTGA+GGG	0.559039	5:+31296819	MsG0580026142.01.T01:CDS
ATTATACCGTTTGTTCGCGA+TGG	0.559940	5:+31296871	MsG0580026142.01.T01:CDS
AATAAACAAGACAACAAAGA+AGG	0.560557	5:+31298851	MsG0580026142.01.T01:CDS
ACCAAGCAAAAGAAAGGCTG+AGG	0.575748	5:+31297607	MsG0580026142.01.T01:CDS
TTTGTCTGATGATGGGGCAG+AGG	0.577375	5:+31297640	MsG0580026142.01.T01:CDS
ATAAAACAAAGCATGAAGAT+GGG	0.579321	5:+31299124	MsG0580026142.01.T01:three_prime_UTR
GAGCTTCCTTGACGAAGTTG+AGG	0.590042	5:-31299004	None:intergenic
AGCAAAAGAAAGGCTGAGGA+TGG	0.596269	5:+31297611	MsG0580026142.01.T01:CDS
TTGTTTGTAGTTATAAGGAA+CGG	0.597779	5:+31296998	MsG0580026142.01.T01:intron
GTGTCGCAACATAAGAGAAG+TGG	0.605265	5:+31299156	MsG0580026142.01.T01:three_prime_UTR
AAAAGAAAGGCTGAGGATGG+TGG	0.614741	5:+31297614	MsG0580026142.01.T01:CDS
TGGCTATTTGTCTGATGATG+GGG	0.620723	5:+31297634	MsG0580026142.01.T01:CDS
TTGGAGGCGATGTAAGATGG+TGG	0.627242	5:+31299041	MsG0580026142.01.T01:exon
GACTCGCCTCAACTTCGTCA+AGG	0.645066	5:+31298998	MsG0580026142.01.T01:CDS
GTGATGAAAGTCGATTCAAG+TGG	0.670817	5:+31299087	MsG0580026142.01.T01:three_prime_UTR
TTAGGTTGAAGCTTGATGTG+AGG	0.671603	5:+31296818	MsG0580026142.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTAGGAAAAAAAAATTAAA+TGG	-	Chr5:31298268-31298287	None:intergenic	10.0%
!!	ATTGAAATTATCATAATTAT+TGG	-	Chr5:31298475-31298494	None:intergenic	10.0%
!!	TAAATTATTTGTAAAAAACA+AGG	+	Chr5:31297729-31297748	MsG0580026142.01.T01:intron	10.0%
!!!	AAAATTTTCTAAACTTATAT+GGG	+	Chr5:31297906-31297925	MsG0580026142.01.T01:intron	10.0%
!!!	TAAAATTTTCTAAACTTATA+TGG	+	Chr5:31297905-31297924	MsG0580026142.01.T01:intron	10.0%
!!!	TGATTAATTATTATTTGTTT+TGG	+	Chr5:31297695-31297714	MsG0580026142.01.T01:intron	10.0%
!!	AGATAATACAAAAAAAATGT+GGG	-	Chr5:31298022-31298041	None:intergenic	15.0%
!!	TTAAAGTAAAAACAATGTTA+AGG	-	Chr5:31298948-31298967	None:intergenic	15.0%
!!!	ACTAAATACAAGATTTTATT+TGG	-	Chr5:31298579-31298598	None:intergenic	15.0%
!!!	ATTTTTTTTGTATTATCTGT+TGG	+	Chr5:31298024-31298043	MsG0580026142.01.T01:intron	15.0%
!!!	CTAAATACAAGATTTTATTT+GGG	-	Chr5:31298578-31298597	None:intergenic	15.0%
!!	ACAGTAAAAAATGAATCAAA+AGG	-	Chr5:31298654-31298673	None:intergenic	20.0%
!!	AGTTTAAATGAATTGTGAAT+TGG	+	Chr5:31297349-31297368	MsG0580026142.01.T01:intron	20.0%
!!	ATGATAATTTCAATTTAGAC+CGG	+	Chr5:31298481-31298500	MsG0580026142.01.T01:intron	20.0%
!!	ATTTGTAAAAAACAAGGAAT+TGG	+	Chr5:31297735-31297754	MsG0580026142.01.T01:intron	20.0%
!!	CAGATAATACAAAAAAAATG+TGG	-	Chr5:31298023-31298042	None:intergenic	20.0%
!!	TTAATGATGAATTTGTGTTT+AGG	+	Chr5:31296800-31296819	MsG0580026142.01.T01:CDS	20.0%
!!	TTAGTTTATAAAGTGATGAT+GGG	+	Chr5:31298594-31298613	MsG0580026142.01.T01:intron	20.0%
!!	TTATAAAAAAAGGAAACAGA+TGG	+	Chr5:31298784-31298803	MsG0580026142.01.T01:CDS	20.0%
!!	TTTATGTTCAAAGAAACATA+AGG	+	Chr5:31297098-31297117	MsG0580026142.01.T01:CDS	20.0%
!!!	AATTTTGTTTGTTGTCTTTT+GGG	+	Chr5:31299207-31299226	MsG0580026142.01.T01:three_prime_UTR	20.0%
!!!	AGGTTTCAAGTTATAAAAAA+AGG	+	Chr5:31298774-31298793	MsG0580026142.01.T01:intron	20.0%
!!!	ATATTTTACTCTTCATATTC+TGG	-	Chr5:31298152-31298171	None:intergenic	20.0%
!!!	TAAAATATCGACTTTACATA+CGG	+	Chr5:31298164-31298183	MsG0580026142.01.T01:intron	20.0%
!!!	TACTTTTTATCATTGGAATT+TGG	+	Chr5:31299276-31299295	MsG0580026142.01.T01:three_prime_UTR	20.0%
!!!	TTTAGTTTATAAAGTGATGA+TGG	+	Chr5:31298593-31298612	MsG0580026142.01.T01:intron	20.0%
!!!	TTTTTGTATTTATCCAACAA+AGG	+	Chr5:31299374-31299393	MsG0580026142.01.T01:three_prime_UTR	20.0%
!!!	TTTTTTTATAACTTGAAACC+TGG	-	Chr5:31298775-31298794	None:intergenic	20.0%
!	AATAAACAAGACAACAAAGA+AGG	+	Chr5:31298851-31298870	MsG0580026142.01.T01:CDS	25.0%
!	ATAAAACAAAGCATGAAGAT+GGG	+	Chr5:31299124-31299143	MsG0580026142.01.T01:three_prime_UTR	25.0%
!	ATGTTAACTATCTAGATCTT+TGG	-	Chr5:31298918-31298937	None:intergenic	25.0%
!	ATTAAGGAAACTACAAATGA+AGG	+	Chr5:31298064-31298083	MsG0580026142.01.T01:intron	25.0%
!	CAATACATAAAACTGGAAAA+GGG	-	Chr5:31297479-31297498	None:intergenic	25.0%
!	GTCATCAAACAATTTCTAAA+AGG	-	Chr5:31298219-31298238	None:intergenic	25.0%
!	TAATGTGTGATGTGTTTATT+AGG	+	Chr5:31297307-31297326	MsG0580026142.01.T01:intron	25.0%
!	TATAAAACAAAGCATGAAGA+TGG	+	Chr5:31299123-31299142	MsG0580026142.01.T01:three_prime_UTR	25.0%
!	TGATAATTTCAATTTAGACC+GGG	+	Chr5:31298482-31298501	MsG0580026142.01.T01:intron	25.0%
!	TGTTAAGCAATACATAAAAC+TGG	-	Chr5:31297486-31297505	None:intergenic	25.0%
!	TTGTTTGTAGTTATAAGGAA+CGG	+	Chr5:31296998-31297017	MsG0580026142.01.T01:intron	25.0%
!!	ATTGATGACAATAATGCATT+AGG	-	Chr5:31298285-31298304	None:intergenic	25.0%
!!	TAGTTTATAAAGTGATGATG+GGG	+	Chr5:31298595-31298614	MsG0580026142.01.T01:intron	25.0%
!!!	AGACTGTTACTTTTTATCAT+TGG	+	Chr5:31299269-31299288	MsG0580026142.01.T01:three_prime_UTR	25.0%
!!!	ATTTTGTTTGTTGTCTTTTG+GGG	+	Chr5:31299208-31299227	MsG0580026142.01.T01:three_prime_UTR	25.0%
!!!	CAATTTTGTTTGTTGTCTTT+TGG	+	Chr5:31299206-31299225	MsG0580026142.01.T01:three_prime_UTR	25.0%
!!!	CATCAGTGTTGTTTTTTAAT+GGG	+	Chr5:31297765-31297784	MsG0580026142.01.T01:intron	25.0%
!!!	TCATCAGTGTTGTTTTTTAA+TGG	+	Chr5:31297764-31297783	MsG0580026142.01.T01:intron	25.0%
!!!	TCTTGTTGTTTGTAGTTATA+AGG	+	Chr5:31296993-31297012	MsG0580026142.01.T01:intron	25.0%
!!!	TTCTTTGTTGTCTTGTTTAT+TGG	-	Chr5:31298852-31298871	None:intergenic	25.0%
	AAAAAGCCTATTGCATACTT+TGG	+	Chr5:31298505-31298524	MsG0580026142.01.T01:intron	30.0%
	AAAGGGATATATACCTCTAT+TGG	-	Chr5:31297462-31297481	None:intergenic	30.0%
	ATTAAGCTGATTGAACTTTG+TGG	+	Chr5:31297223-31297242	MsG0580026142.01.T01:CDS	30.0%
	GCAATACATAAAACTGGAAA+AGG	-	Chr5:31297480-31297499	None:intergenic	30.0%
	GGTTAATGTGTAGTGATTAT+AGG	+	Chr5:31298085-31298104	MsG0580026142.01.T01:intron	30.0%
	GTATTTATCCAACAAAGGTT+GGG	+	Chr5:31299379-31299398	MsG0580026142.01.T01:three_prime_UTR	30.0%
	TGTATTTATCCAACAAAGGT+TGG	+	Chr5:31299378-31299397	MsG0580026142.01.T01:three_prime_UTR	30.0%
	TTATAGACCAGCTTTCATAT+TGG	+	Chr5:31297803-31297822	MsG0580026142.01.T01:intron	30.0%
!	AAAAATGTGGGATTTAAGAC+AGG	-	Chr5:31298010-31298029	None:intergenic	30.0%
!	AAAATGTGGGATTTAAGACA+GGG	-	Chr5:31298009-31298028	None:intergenic	30.0%
!	AAAGCATCAGAACAACATAA+TGG	-	Chr5:31298679-31298698	None:intergenic	30.0%
!	AATATGAAAGCTGGTCTATA+AGG	-	Chr5:31297804-31297823	None:intergenic	30.0%
!	ATGTTGAAATCTGAAACACA+AGG	+	Chr5:31298110-31298129	MsG0580026142.01.T01:intron	30.0%
!	CTTGCTATAGATTAATGCTT+TGG	-	Chr5:31299239-31299258	None:intergenic	30.0%
!	TCTTTTGTCTGTATATATCC+AGG	+	Chr5:31298754-31298773	MsG0580026142.01.T01:intron	30.0%
!!	TGTCTTGTTTATTGGATGTA+AGG	-	Chr5:31298844-31298863	None:intergenic	30.0%
!!	TTCTAGCTGATTTTGTTGAA+AGG	-	Chr5:31299414-31299433	None:intergenic	30.0%
	AAACGCGTGATTATGAGAAA+TGG	+	Chr5:31298807-31298826	MsG0580026142.01.T01:CDS	35.0%
	AAAGAAGTGAAGACCAATAG+AGG	+	Chr5:31297446-31297465	MsG0580026142.01.T01:CDS	35.0%
	ACTGATCCAAAGTATGCAAT+AGG	-	Chr5:31298514-31298533	None:intergenic	35.0%
	ATAGACACTGGTGTTTCATA+AGG	-	Chr5:31298355-31298374	None:intergenic	35.0%
	ATGAATTCAACTGCACTTTC+TGG	-	Chr5:31298554-31298573	None:intergenic	35.0%
	ATTGTCATCAATGCCAAAGT+TGG	+	Chr5:31298293-31298312	MsG0580026142.01.T01:intron	35.0%
	CCAACAGATAATACAAGACA+TGG	-	Chr5:31297939-31297958	None:intergenic	35.0%
	CCATGTCTTGTATTATCTGT+TGG	+	Chr5:31297936-31297955	MsG0580026142.01.T01:intron	35.0%
	CTCATCAATCTAATAGACAC+TGG	-	Chr5:31298367-31298386	None:intergenic	35.0%
	GCAATGAACAAAACAATGCA+AGG	-	Chr5:31298422-31298441	None:intergenic	35.0%
	GGTAAAACCAATATGAAAGC+TGG	-	Chr5:31297813-31297832	None:intergenic	35.0%
	TATCTCAGCGAATTCAACTT+GGG	-	Chr5:31297834-31297853	None:intergenic	35.0%
	TATCTGTTGGATCCATACAT+TGG	+	Chr5:31298037-31298056	MsG0580026142.01.T01:intron	35.0%
	TATTGCATACTTTGGATCAG+TGG	+	Chr5:31298513-31298532	MsG0580026142.01.T01:intron	35.0%
	TCATAAGGCAGAGTTGTAAA+GGG	-	Chr5:31298340-31298359	None:intergenic	35.0%
	TCCTTAATCAAGCCAATGTA+TGG	-	Chr5:31298052-31298071	None:intergenic	35.0%
	TGTCTACTGTACTGTATTGT+TGG	+	Chr5:31297871-31297890	MsG0580026142.01.T01:intron	35.0%
	TGTCTTACCAAGCAAAAGAA+AGG	+	Chr5:31297601-31297620	MsG0580026142.01.T01:CDS	35.0%
	TTCATAAGGCAGAGTTGTAA+AGG	-	Chr5:31298341-31298360	None:intergenic	35.0%
	TTCTGATTCTCTGCTTCTTT+GGG	+	Chr5:31297565-31297584	MsG0580026142.01.T01:intron	35.0%
	TTTCTGATTCTCTGCTTCTT+TGG	+	Chr5:31297564-31297583	MsG0580026142.01.T01:intron	35.0%
!	AATCTGAAACACAAGGTTTG+CGG	+	Chr5:31298117-31298136	MsG0580026142.01.T01:intron	35.0%
!	ACTTGTGCCATGATGTTTTT+GGG	+	Chr5:31297399-31297418	MsG0580026142.01.T01:CDS	35.0%
!	GCTGAGATAGACTAATTTTG+TGG	+	Chr5:31297845-31297864	MsG0580026142.01.T01:intron	35.0%
!	GTGTTGATGTCTTGATGAAA+TGG	+	Chr5:31296968-31296987	MsG0580026142.01.T01:intron	35.0%
!	TTTTACTCGTCCAGTTTTCA+TGG	+	Chr5:31297062-31297081	MsG0580026142.01.T01:CDS	35.0%
!!	CATTGTTTTGTTCATTGCAG+TGG	+	Chr5:31298424-31298443	MsG0580026142.01.T01:intron	35.0%
!!	CTATTGGTCTTCACTTCTTT+AGG	-	Chr5:31297446-31297465	None:intergenic	35.0%
!!	GAATTGTGAATTGGTGTTGT+AGG	+	Chr5:31297358-31297377	MsG0580026142.01.T01:intron	35.0%
!!	TCCATACATTGGCTTGATTA+AGG	+	Chr5:31298048-31298067	MsG0580026142.01.T01:intron	35.0%
	AAAGCAACAGCCATGAAAAC+TGG	-	Chr5:31297075-31297094	None:intergenic	40.0%
	AGGGAATTGGCGATTCAATT+CGG	+	Chr5:31296838-31296857	MsG0580026142.01.T01:CDS	40.0%
	ATTATACCGTTTGTTCGCGA+TGG	+	Chr5:31296871-31296890	MsG0580026142.01.T01:CDS	40.0%
	CAGTGCAAACACAATGTATG+TGG	+	Chr5:31297138-31297157	MsG0580026142.01.T01:intron	40.0%
	CATTATGCATCCACCAACTT+TGG	-	Chr5:31298309-31298328	None:intergenic	40.0%
	CTACTGTACTGTATTGTTGG+AGG	+	Chr5:31297874-31297893	MsG0580026142.01.T01:intron	40.0%
	CTATCTCAGCGAATTCAACT+TGG	-	Chr5:31297835-31297854	None:intergenic	40.0%
	GTGGCTATTTGTCTGATGAT+GGG	+	Chr5:31297633-31297652	MsG0580026142.01.T01:CDS	40.0%
	TAGCTACCCCAAAAACATCA+TGG	-	Chr5:31297409-31297428	None:intergenic	40.0%
!	GACTTGTGCCATGATGTTTT+TGG	+	Chr5:31297398-31297417	MsG0580026142.01.T01:CDS	40.0%
!	GAGCTTTGTCAAAGTTGTGA+AGG	+	Chr5:31298186-31298205	MsG0580026142.01.T01:intron	40.0%
!	GATTTAAGACAGGGCAACAA+GGG	-	Chr5:31298000-31298019	None:intergenic	40.0%
!	GTGATGAAAGTCGATTCAAG+TGG	+	Chr5:31299087-31299106	MsG0580026142.01.T01:three_prime_UTR	40.0%
!	TAGGTTGAAGCTTGATGTGA+GGG	+	Chr5:31296819-31296838	MsG0580026142.01.T01:CDS	40.0%
!	TGGCTATTTGTCTGATGATG+GGG	+	Chr5:31297634-31297653	MsG0580026142.01.T01:CDS	40.0%
!!	CTTGTGCCATGATGTTTTTG+GGG	+	Chr5:31297400-31297419	MsG0580026142.01.T01:CDS	40.0%
!!	GTATGCAATAGGCTTTTTCC+CGG	-	Chr5:31298503-31298522	None:intergenic	40.0%
!!	TTAGGTTGAAGCTTGATGTG+AGG	+	Chr5:31296818-31296837	MsG0580026142.01.T01:CDS	40.0%
!!!	AGTCTGTTTTGGTTTCTTGC+TGG	-	Chr5:31298982-31299001	None:intergenic	40.0%
!!!	GTCTGTTTTGGTTTCTTGCT+GGG	-	Chr5:31298981-31299000	None:intergenic	40.0%
	AAAAGAAAGGCTGAGGATGG+TGG	+	Chr5:31297614-31297633	MsG0580026142.01.T01:CDS	45.0%
	AAGTTGGAGGCGATGTAAGA+TGG	+	Chr5:31299038-31299057	MsG0580026142.01.T01:exon	45.0%
	ACCAAGCAAAAGAAAGGCTG+AGG	+	Chr5:31297607-31297626	MsG0580026142.01.T01:CDS	45.0%
	ACGGTTTATTTCGTCGTTGC+CGG	+	Chr5:31297017-31297036	MsG0580026142.01.T01:CDS	45.0%
	AGCAAAAGAAAGGCTGAGGA+TGG	+	Chr5:31297611-31297630	MsG0580026142.01.T01:CDS	45.0%
	AGCATTGTCCCAACCTTTGT+TGG	-	Chr5:31299390-31299409	None:intergenic	45.0%
	CGATTCAATTCGGGTGTGTT+CGG	+	Chr5:31296848-31296867	MsG0580026142.01.T01:CDS	45.0%
	CTTCTCTTATGTTGCGACAC+AGG	-	Chr5:31299156-31299175	None:intergenic	45.0%
	GAAGCTTGATGTGAGGGAAT+TGG	+	Chr5:31296825-31296844	MsG0580026142.01.T01:CDS	45.0%
	GACAGCAAGAATACTCACGA+TGG	+	Chr5:31298241-31298260	MsG0580026142.01.T01:intron	45.0%
	GGGAATTGGCGATTCAATTC+GGG	+	Chr5:31296839-31296858	MsG0580026142.01.T01:CDS	45.0%
	GGTGGCTATTTGTCTGATGA+TGG	+	Chr5:31297632-31297651	MsG0580026142.01.T01:CDS	45.0%
	GTCATCAATGCCAAAGTTGG+TGG	+	Chr5:31298296-31298315	MsG0580026142.01.T01:intron	45.0%
	GTGTCGCAACATAAGAGAAG+TGG	+	Chr5:31299156-31299175	MsG0580026142.01.T01:three_prime_UTR	45.0%
	TAATGATGTTCCGTGCACTG+AGG	+	Chr5:31298388-31298407	MsG0580026142.01.T01:intron	45.0%
	TCATTGCAGTGGCCTCTATT+TGG	+	Chr5:31298435-31298454	MsG0580026142.01.T01:intron	45.0%
	TCTATGACCCTGCCAAATAG+AGG	-	Chr5:31298450-31298469	None:intergenic	45.0%
	TTACATCGCCTCCAACTTCT+GGG	-	Chr5:31299036-31299055	None:intergenic	45.0%
	TTGAGACCATCGCGAACAAA+CGG	-	Chr5:31296880-31296899	None:intergenic	45.0%
!	AAGTTGAGGCGAGTCTGTTT+TGG	-	Chr5:31298993-31299012	None:intergenic	45.0%
!	GGATTTAAGACAGGGCAACA+AGG	-	Chr5:31298001-31298020	None:intergenic	45.0%
!	TCCTCAGCCTTTCTTTTGCT+TGG	-	Chr5:31297611-31297630	None:intergenic	45.0%
!	TCGTGAGTATTCTTGCTGTC+TGG	-	Chr5:31298241-31298260	None:intergenic	45.0%
	CTAGATCTTTGGCTGAGACG+TGG	-	Chr5:31298907-31298926	None:intergenic	50.0%
	CTTACATCGCCTCCAACTTC+TGG	-	Chr5:31299037-31299056	None:intergenic	50.0%
	GAGCTTCCTTGACGAAGTTG+AGG	-	Chr5:31299007-31299026	None:intergenic	50.0%
	TAAGACAGGGCAACAAGGGA+TGG	-	Chr5:31297996-31298015	None:intergenic	50.0%
	TTGGAGGCGATGTAAGATGG+TGG	+	Chr5:31299041-31299060	MsG0580026142.01.T01:exon	50.0%
!!	TGATGGGGCAGAGGTATCAA+TGG	+	Chr5:31297649-31297668	MsG0580026142.01.T01:intron	50.0%
!!	TTTGTCTGATGATGGGGCAG+AGG	+	Chr5:31297640-31297659	MsG0580026142.01.T01:CDS	50.0%
	AGCTCCTGAGACCCAGAAGT+TGG	+	Chr5:31299022-31299041	MsG0580026142.01.T01:CDS	55.0%
	GACTCGCCTCAACTTCGTCA+AGG	+	Chr5:31298998-31299017	MsG0580026142.01.T01:CDS	55.0%
	GCAGTGGCCTCTATTTGGCA+GGG	+	Chr5:31298440-31298459	MsG0580026142.01.T01:intron	55.0%
	TCCTGAGACCCAGAAGTTGG+AGG	+	Chr5:31299025-31299044	MsG0580026142.01.T01:CDS	55.0%
	TGATGTTCCGTGCACTGAGG+TGG	+	Chr5:31298391-31298410	MsG0580026142.01.T01:intron	55.0%
	TGCAGTGGCCTCTATTTGGC+AGG	+	Chr5:31298439-31298458	MsG0580026142.01.T01:intron	55.0%
	GCCTCCAACTTCTGGGTCTC+AGG	-	Chr5:31299029-31299048	None:intergenic	60.0%
	GGATGTGCCACCTCAGTGCA+CGG	-	Chr5:31298401-31298420	None:intergenic	60.0%
	GCACTTGCACGACGAGCAGC+CGG	-	Chr5:31297039-31297058	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	31296784	31299461	31296784	ID=MsG0580026142.01;Name=MsG0580026142.01
Chr5	mRNA	31296784	31299461	31296784	ID=MsG0580026142.01.T01;Parent=MsG0580026142.01;Name=MsG0580026142.01.T01;_AED=0.43;_eAED=0.43;_QI=0\|1\|0.85\|1\|1\|1\|7\|406\|209
Chr5	exon	31296784	31296902	31296784	ID=MsG0580026142.01.T01:exon:13044;Parent=MsG0580026142.01.T01
Chr5	exon	31297008	31297119	31297008	ID=MsG0580026142.01.T01:exon:13045;Parent=MsG0580026142.01.T01
Chr5	exon	31297208	31297270	31297208	ID=MsG0580026142.01.T01:exon:13046;Parent=MsG0580026142.01.T01
Chr5	exon	31297380	31297467	31297380	ID=MsG0580026142.01.T01:exon:13047;Parent=MsG0580026142.01.T01
Chr5	exon	31297591	31297661	31297591	ID=MsG0580026142.01.T01:exon:13048;Parent=MsG0580026142.01.T01
Chr5	exon	31298776	31298872	31298776	ID=MsG0580026142.01.T01:exon:13049;Parent=MsG0580026142.01.T01
Chr5	exon	31298976	31299461	31298976	ID=MsG0580026142.01.T01:exon:13050;Parent=MsG0580026142.01.T01
Chr5	CDS	31296784	31296902	31296784	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31297008	31297119	31297008	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31297208	31297270	31297208	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31297380	31297467	31297380	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31297591	31297661	31297591	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31298776	31298872	31298776	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	CDS	31298976	31299055	31298976	ID=MsG0580026142.01.T01:cds;Parent=MsG0580026142.01.T01
Chr5	three_prime_UTR	31299056	31299461	31299056	ID=MsG0580026142.01.T01:three_prime_utr;Parent=MsG0580026142.01.T01

Gene Sequence

>MsG0580026142.01.T01

TTGGTTTTTTATTTTGTTAATGATGAATTTGTGTTTAGGTTGAAGCTTGATGTGAGGGAATTGGCGATTCAATTCGGGTGTGTTCGGATTATACCGTTTGTTCGCGATGGTCTCAAGCTTTATAAGGAACGGTTTATTTCGTCGTTGCCGGCTGCTCGTCGTGCAAGTGCTGATTTTACTCGTCCAGTTTTCATGGCTGTTGCTTTTTATTTATGTTCAAAGAAACATAAGTTGAAAGTTGATAAGATTAAGCTGATTGAACTTTGTGGTACATCTGAATCTGAATTTTCTAGTGTTTCTACTACTATGAAAGACTTGTGCCATGATGTTTTTGGGGTAGCTAAAGAAAAGAAAGATCCTAAAGAAGTGAAGACCAATAGAGATTTGCTTGATGTCTTACCAAGCAAAAGAAAGGCTGAGGATGGTGGCTATTTGTCTGATGATGGGGCAGAGGTTTCAAGTTATAAAAAAAGGAAACAGATGGAAACGCGTGATTATGAGAAATGGAAATCTTCAGTCCTTACATCCAATAAACAAGACAACAAAGAAGTGCCCAGCAAGAAACCAAAACAGACTCGCCTCAACTTCGTCAAGGAAGCTCCTGAGACCCAGAAGTTGGAGGCGATGTAA

Protein sequence

>MsG0580026142.01.T01

LVFYFVNDEFVFRLKLDVRELAIQFGCVRIIPFVRDGLKLYKERFISSLPAARRASADFTRPVFMAVAFYLCSKKHKLKVDKIKLIELCGTSESEFSSVSTTMKDLCHDVFGVAKEKKDPKEVKTNRDLLDVLPSKRKAEDGGYLSDDGAEVSSYKKRKQMETRDYEKWKSSVLTSNKQDNKEVPSKKPKQTRLNFVKEAPETQKLEAM*