AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041742.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041742.01.T01 MTR_7g117200 91.642 335 19 2 1 333 1 328 0.0 619
MsG0780041742.01.T01 MTR_8g027860 44.837 368 141 15 1 329 1 345 3.20e-78 243
MsG0780041742.01.T01 MTR_8g099350 36.585 369 189 12 1 332 1 361 1.99e-55 184
MsG0780041742.01.T01 MTR_3g090860 53.125 192 67 9 12 185 7 193 1.54e-53 179
MsG0780041742.01.T01 MTR_7g073430 33.500 200 108 5 9 198 11 195 4.93e-26 105
MsG0780041742.01.T01 MTR_7g073380 32.275 189 97 5 9 184 12 182 4.92e-25 102
MsG0780041742.01.T01 MTR_8g005750 36.364 176 85 5 15 184 8 162 2.10e-24 100
MsG0780041742.01.T01 MTR_5g067680 40.650 123 59 1 118 240 195 303 4.47e-21 92.8
MsG0780041742.01.T01 MTR_2g075690 30.622 209 109 6 11 195 15 211 8.78e-21 91.3
MsG0780041742.01.T01 MTR_0002s1250 30.556 180 96 7 15 184 10 170 2.40e-20 89.4
MsG0780041742.01.T01 MTR_5g067700 31.892 185 101 6 7 189 10 171 5.78e-20 87.8
MsG0780041742.01.T01 MTR_3g093830 30.570 193 103 5 18 196 23 198 2.31e-19 87.4
MsG0780041742.01.T01 MTR_2g075700 45.349 86 37 2 100 184 127 203 8.33e-19 85.9
MsG0780041742.01.T01 MTR_2g075680 45.349 86 38 2 99 184 131 207 1.32e-17 82.4
MsG0780041742.01.T01 MTR_2g075750 49.180 61 31 0 124 184 27 87 7.02e-17 77.8
MsG0780041742.01.T01 MTR_2g075610 49.180 61 31 0 124 184 28 88 9.62e-17 77.8
MsG0780041742.01.T01 MTR_1g009613 43.529 85 44 2 98 182 237 317 3.62e-16 78.6
MsG0780041742.01.T01 MTR_7g109600 40.870 115 63 3 78 189 3 115 5.48e-16 77.0
MsG0780041742.01.T01 MTR_7g028415 55.224 67 25 2 124 190 92 153 1.52e-15 73.9
MsG0780041742.01.T01 MTR_7g028710 55.224 67 25 2 124 190 92 153 1.52e-15 73.9
MsG0780041742.01.T01 MTR_7g109800 40.594 101 56 2 88 187 107 204 1.91e-15 75.9
MsG0780041742.01.T01 MTR_8g028565 38.679 106 59 3 82 187 114 213 4.20e-15 75.5
MsG0780041742.01.T01 MTR_4g127040 32.624 141 72 3 42 182 183 300 4.52e-15 75.1
MsG0780041742.01.T01 MTR_8g098945 47.297 74 33 3 121 194 125 192 5.59e-15 74.3
MsG0780041742.01.T01 MTR_8g087000 36.885 122 65 3 99 215 45 159 9.25e-15 73.2
MsG0780041742.01.T01 MTR_8g087000 39.796 98 52 2 118 215 70 160 9.85e-15 73.2
MsG0780041742.01.T01 MTR_8g032510 50.000 60 30 0 125 184 119 178 1.11e-14 73.6
MsG0780041742.01.T01 MTR_7g079040 51.515 66 26 2 126 191 155 214 3.86e-14 72.4
MsG0780041742.01.T01 MTR_5g016610 54.386 57 24 1 126 182 200 254 4.44e-14 71.6
MsG0780041742.01.T01 MTR_2g032030 41.748 103 52 4 126 222 268 368 4.54e-14 73.2
MsG0780041742.01.T01 MTR_2g032030 41.748 103 52 4 126 222 268 368 5.79e-14 72.8
MsG0780041742.01.T01 MTR_7g079010 45.122 82 40 2 124 205 140 216 6.59e-14 70.5
MsG0780041742.01.T01 MTR_2g083870 43.750 96 48 3 99 190 50 143 7.72e-14 70.9
MsG0780041742.01.T01 MTR_5g043880 52.381 63 26 2 124 186 123 181 9.57e-14 70.9
MsG0780041742.01.T01 MTR_2g016770 46.479 71 32 2 126 196 36 100 1.13e-13 69.7
MsG0780041742.01.T01 MTR_8g096730 46.269 67 31 2 124 190 69 130 1.20e-13 67.8
MsG0780041742.01.T01 MTR_2g016770 46.479 71 32 2 126 196 28 92 1.27e-13 69.3
MsG0780041742.01.T01 MTR_1g070455 52.632 57 25 1 126 182 294 348 2.69e-13 70.5
MsG0780041742.01.T01 MTR_4g094908 50.877 57 26 1 126 182 267 321 6.91e-13 68.9
MsG0780041742.01.T01 MTR_4g082580 44.118 68 35 1 125 192 145 209 7.24e-13 69.3
MsG0780041742.01.T01 MTR_4g082580 41.772 79 43 1 112 190 265 340 2.40e-11 64.7
MsG0780041742.01.T01 MTR_1g086790 50.000 64 27 2 124 187 157 215 7.25e-13 68.9
MsG0780041742.01.T01 MTR_4g094588 47.143 70 32 2 124 193 177 241 7.80e-13 68.9
MsG0780041742.01.T01 MTR_5g091390 49.153 59 27 1 124 182 156 211 7.91e-13 68.6
MsG0780041742.01.T01 MTR_3g009470 45.714 70 32 3 125 194 280 343 8.01e-13 69.7
MsG0780041742.01.T01 MTR_3g009470 33.663 101 59 2 124 219 494 591 7.02e-11 63.9
MsG0780041742.01.T01 MTR_3g009470 45.714 70 32 3 125 194 280 343 8.75e-13 69.3
MsG0780041742.01.T01 MTR_3g095080 44.444 72 37 1 112 183 131 199 1.24e-12 66.6
MsG0780041742.01.T01 MTR_3g095080 44.444 72 37 1 112 183 155 223 1.24e-12 67.0
MsG0780041742.01.T01 MTR_2g033820 48.438 64 30 1 124 187 202 262 1.39e-12 68.2
MsG0780041742.01.T01 MTR_8g092140 50.000 60 27 1 124 183 159 215 1.45e-12 66.6
MsG0780041742.01.T01 MTR_7g011820 46.875 64 30 2 125 188 228 287 1.65e-12 68.6
MsG0780041742.01.T01 MTR_7g011820 44.776 67 34 1 124 190 409 472 4.17e-12 67.4
MsG0780041742.01.T01 MTR_5g042920 46.269 67 33 1 124 190 319 382 1.74e-12 68.2
MsG0780041742.01.T01 MTR_5g042920 35.652 115 65 4 125 239 151 256 5.94e-11 63.5
MsG0780041742.01.T01 MTR_7g100510 31.667 120 78 2 126 245 190 305 1.97e-12 68.2
MsG0780041742.01.T01 MTR_7g062220 49.275 69 28 2 114 182 117 178 2.46e-12 67.0
MsG0780041742.01.T01 MTR_1g099600 44.928 69 32 2 126 194 186 248 2.59e-12 67.0
MsG0780041742.01.T01 MTR_5g094430 44.776 67 34 1 124 190 363 426 3.13e-12 67.8
MsG0780041742.01.T01 MTR_5g094430 45.833 72 33 3 123 194 198 263 5.24e-12 67.0
MsG0780041742.01.T01 MTR_5g073620 43.284 67 38 0 125 191 672 738 3.39e-12 67.8
MsG0780041742.01.T01 MTR_3g056100 47.143 70 31 3 125 194 243 306 3.83e-12 67.4
MsG0780041742.01.T01 MTR_3g056100 44.776 67 34 1 124 190 401 464 6.24e-12 67.0
MsG0780041742.01.T01 MTR_5g094430 44.776 67 34 1 124 190 251 314 4.07e-12 67.0
MsG0780041742.01.T01 MTR_5g094430 45.833 72 33 3 123 194 86 151 5.96e-12 66.6
MsG0780041742.01.T01 MTR_3g108960 52.632 57 25 1 126 182 315 369 4.12e-12 67.0
MsG0780041742.01.T01 MTR_3g056100 47.143 70 31 3 125 194 243 306 4.17e-12 67.4
MsG0780041742.01.T01 MTR_3g056100 44.776 67 34 1 124 190 414 477 6.92e-12 66.6
MsG0780041742.01.T01 MTR_5g094430 44.776 67 34 1 124 190 229 292 4.17e-12 67.0
MsG0780041742.01.T01 MTR_5g094430 45.833 72 33 3 123 194 64 129 6.59e-12 66.2
MsG0780041742.01.T01 MTR_3g056100 47.143 70 31 3 125 194 99 162 5.03e-12 67.0
MsG0780041742.01.T01 MTR_3g056100 44.776 67 34 1 124 190 257 320 8.76e-12 66.2
MsG0780041742.01.T01 MTR_3g056100 47.143 70 31 3 125 194 99 162 5.07e-12 67.0
MsG0780041742.01.T01 MTR_3g056100 44.776 67 34 1 124 190 270 333 9.24e-12 66.2
MsG0780041742.01.T01 MTR_8g007270 45.070 71 36 1 112 182 141 208 5.31e-12 65.1
MsG0780041742.01.T01 MTR_0117s0040 52.632 57 25 1 126 182 75 129 6.27e-12 65.1
MsG0780041742.01.T01 MTR_4g122530 45.312 64 32 1 124 187 207 267 1.14e-11 65.9
MsG0780041742.01.T01 MTR_7g080020 44.615 65 32 2 125 189 280 340 1.15e-11 66.2
MsG0780041742.01.T01 MTR_5g074400 44.776 67 34 1 124 190 419 482 3.91e-11 64.3
MsG0780041742.01.T01 MTR_2g088000 48.485 66 32 1 124 189 348 411 3.91e-11 64.3
MsG0780041742.01.T01 MTR_1g015140 38.824 85 45 3 107 189 82 161 9.02e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041742.01.T01 AT4G11070 38.728 346 147 13 3 324 2 306 2.52e-51 172
MsG0780041742.01.T01 AT4G11070 37.423 326 147 11 3 324 2 274 9.60e-47 160
MsG0780041742.01.T01 AT5G24110 37.066 259 120 10 12 265 17 237 7.99e-43 150
MsG0780041742.01.T01 AT4G23810 42.478 226 85 7 11 195 13 234 8.79e-43 150
MsG0780041742.01.T01 AT2G46400 37.542 301 153 10 12 309 8 276 9.73e-41 144
MsG0780041742.01.T01 AT3G56400 32.995 197 98 5 3 184 2 179 9.71e-27 107
MsG0780041742.01.T01 AT2G40750 27.941 272 160 7 5 244 8 275 1.27e-23 100
MsG0780041742.01.T01 AT2G40740 42.202 109 61 1 99 205 145 253 2.70e-22 95.5
MsG0780041742.01.T01 AT2G40740 42.202 109 61 1 99 205 154 262 3.38e-22 95.1
MsG0780041742.01.T01 AT5G45260 47.423 97 41 4 99 195 1188 1274 8.64e-19 88.2
MsG0780041742.01.T01 AT1G66550 29.282 181 90 6 16 184 13 167 5.63e-16 77.0
MsG0780041742.01.T01 AT1G66600 40.909 88 45 1 104 184 75 162 2.64e-15 74.7
MsG0780041742.01.T01 AT5G52830 54.839 62 26 1 126 187 166 225 3.16e-15 75.9
MsG0780041742.01.T01 AT1G29280 53.226 62 25 2 126 187 75 132 6.00e-15 73.9
MsG0780041742.01.T01 AT1G66550 38.636 88 47 1 104 184 75 162 1.35e-14 72.8
MsG0780041742.01.T01 AT4G31550 44.048 84 43 2 99 182 221 300 1.88e-14 73.6
MsG0780041742.01.T01 AT5G49520 50.000 64 29 1 124 187 220 280 2.20e-14 73.9
MsG0780041742.01.T01 AT4G31550 54.386 57 24 1 126 182 247 301 4.86e-14 72.4
MsG0780041742.01.T01 AT4G01250 51.613 62 26 2 126 187 129 186 8.79e-14 71.2
MsG0780041742.01.T01 AT1G30650 41.905 105 48 6 95 194 184 280 9.41e-14 72.0
MsG0780041742.01.T01 AT2G30590 50.794 63 27 2 126 188 314 372 9.81e-14 72.0
MsG0780041742.01.T01 AT2G34830 35.938 128 58 6 78 187 152 273 1.42e-13 71.6
MsG0780041742.01.T01 AT2G34830 35.938 128 58 6 78 187 161 282 1.50e-13 71.6
MsG0780041742.01.T01 AT1G66560 46.667 60 32 0 125 184 103 162 1.51e-13 70.1
MsG0780041742.01.T01 AT1G69310 40.476 84 47 1 99 182 121 201 3.97e-13 69.3
MsG0780041742.01.T01 AT1G69310 40.476 84 47 1 99 182 121 201 3.97e-13 69.3
MsG0780041742.01.T01 AT1G69310 40.476 84 47 1 99 182 121 201 3.97e-13 69.3
MsG0780041742.01.T01 AT2G24570 54.386 57 24 1 126 182 244 298 4.06e-13 69.7
MsG0780041742.01.T01 AT2G37260 35.345 116 60 3 72 182 218 323 4.90e-13 69.7
MsG0780041742.01.T01 AT2G37260 35.345 116 60 3 72 182 216 321 5.02e-13 69.3
MsG0780041742.01.T01 AT2G37260 35.345 116 60 3 72 182 298 403 5.87e-13 69.7
MsG0780041742.01.T01 AT5G41570 43.038 79 40 2 112 190 85 158 7.97e-13 66.6
MsG0780041742.01.T01 AT5G13080 51.562 64 26 2 124 187 66 124 8.47e-13 65.5
MsG0780041742.01.T01 AT3G58710 43.011 93 45 4 99 187 40 128 9.40e-13 67.8
MsG0780041742.01.T01 AT4G24240 41.667 84 45 2 99 182 257 336 1.12e-12 68.6
MsG0780041742.01.T01 AT1G29860 40.476 84 45 2 110 193 121 199 1.14e-12 67.8
MsG0780041742.01.T01 AT1G64000 40.659 91 43 3 112 196 101 186 1.23e-12 66.2
MsG0780041742.01.T01 AT2G23320 50.877 57 26 1 126 182 241 295 1.25e-12 68.2
MsG0780041742.01.T01 AT3G58710 50.000 62 27 2 126 187 72 129 1.40e-12 67.4
MsG0780041742.01.T01 AT4G18170 35.238 105 63 2 83 187 130 229 1.47e-12 67.8
MsG0780041742.01.T01 AT2G47260 37.778 90 53 1 98 187 147 233 1.50e-12 68.2
MsG0780041742.01.T01 AT2G46130 48.438 64 28 2 124 187 29 87 1.64e-12 63.5
MsG0780041742.01.T01 AT5G28650 52.632 57 25 1 126 182 263 317 1.78e-12 67.8
MsG0780041742.01.T01 AT4G23550 46.774 62 31 1 121 182 136 195 1.87e-12 67.4
MsG0780041742.01.T01 AT1G80590 39.241 79 45 1 112 187 69 147 2.80e-12 65.9
MsG0780041742.01.T01 AT2G44745 45.070 71 36 1 112 182 132 199 4.41e-12 65.1
MsG0780041742.01.T01 AT5G01900 43.750 64 36 0 126 189 111 174 5.44e-12 65.5
MsG0780041742.01.T01 AT3G01970 48.529 68 30 2 124 191 64 126 6.15e-12 63.2
MsG0780041742.01.T01 AT4G26640 45.714 70 32 3 125 194 171 234 6.19e-12 67.0
MsG0780041742.01.T01 AT4G26640 44.776 67 34 1 124 190 340 403 8.81e-12 66.2
MsG0780041742.01.T01 AT4G26640 45.070 71 33 3 124 194 138 202 6.89e-12 66.6
MsG0780041742.01.T01 AT4G26640 44.776 67 34 1 124 190 308 371 1.06e-11 66.2
MsG0780041742.01.T01 AT5G46350 46.875 64 29 2 124 187 182 240 6.93e-12 65.9
MsG0780041742.01.T01 AT4G26640 45.714 70 32 3 125 194 211 274 7.30e-12 66.6
MsG0780041742.01.T01 AT4G26640 44.776 67 34 1 124 190 380 443 1.10e-11 66.2
MsG0780041742.01.T01 AT4G26640 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
MsG0780041742.01.T01 AT4G26640 44.776 67 34 1 124 190 204 267 1.21e-11 65.5
MsG0780041742.01.T01 AT4G26640 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
MsG0780041742.01.T01 AT4G26640 44.776 67 34 1 124 190 204 267 1.21e-11 65.5
MsG0780041742.01.T01 AT4G26640 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
MsG0780041742.01.T01 AT4G26640 44.776 67 34 1 124 190 204 267 1.21e-11 65.5
MsG0780041742.01.T01 AT4G26640 45.070 71 33 3 124 194 34 98 7.41e-12 66.2
MsG0780041742.01.T01 AT4G26640 44.776 67 34 1 124 190 204 267 1.21e-11 65.5
MsG0780041742.01.T01 AT3G01080 48.438 64 29 2 125 188 205 264 7.78e-12 65.9
MsG0780041742.01.T01 AT3G62340 48.438 64 30 1 124 187 117 177 7.99e-12 65.5
MsG0780041742.01.T01 AT3G04670 50.877 57 26 1 126 182 263 317 8.71e-12 65.9
MsG0780041742.01.T01 AT4G26440 50.794 63 27 2 125 187 178 236 9.60e-12 66.2
MsG0780041742.01.T01 AT4G26440 46.269 67 33 1 124 190 371 434 2.09e-11 65.5
MsG0780041742.01.T01 AT1G13960 46.875 64 30 2 125 188 229 288 1.01e-11 66.2
MsG0780041742.01.T01 AT1G13960 47.458 59 28 1 124 182 408 463 1.32e-11 65.9
MsG0780041742.01.T01 AT2G25000 44.776 67 35 1 123 189 123 187 1.15e-11 64.3
MsG0780041742.01.T01 AT3G01080 46.970 66 31 2 125 190 205 266 1.17e-11 65.9
MsG0780041742.01.T01 AT2G25000 44.776 67 35 1 123 189 101 165 1.22e-11 63.9
MsG0780041742.01.T01 AT2G25000 44.776 67 35 1 123 189 101 165 1.22e-11 63.9
MsG0780041742.01.T01 AT2G03340 45.455 66 32 2 125 190 250 311 1.29e-11 65.9
MsG0780041742.01.T01 AT2G03340 43.284 67 35 1 124 190 414 477 2.62e-11 65.1
MsG0780041742.01.T01 AT2G25000 44.776 67 35 1 123 189 144 208 1.45e-11 64.3
MsG0780041742.01.T01 AT3G01080 46.970 66 31 2 125 190 167 228 1.49e-11 65.5
MsG0780041742.01.T01 AT2G04880 44.304 79 36 4 119 197 105 175 1.79e-11 65.5
MsG0780041742.01.T01 AT2G04880 40.299 67 37 1 124 190 282 345 6.40e-11 63.5
MsG0780041742.01.T01 AT1G13960 47.458 59 28 1 124 182 255 310 1.83e-11 65.1
MsG0780041742.01.T01 AT1G13960 46.875 64 30 2 125 188 76 135 1.86e-11 64.7
MsG0780041742.01.T01 AT2G04880 44.304 79 36 4 119 197 105 175 1.84e-11 65.5
MsG0780041742.01.T01 AT2G04880 40.299 67 37 1 124 190 306 369 8.34e-11 63.2
MsG0780041742.01.T01 AT4G39410 41.176 85 46 2 98 182 197 277 2.94e-11 63.9
MsG0780041742.01.T01 AT4G01720 37.963 108 60 4 81 187 196 297 3.33e-11 64.7
MsG0780041742.01.T01 AT5G45050 42.500 80 40 3 108 187 1026 1099 4.68e-11 64.7
MsG0780041742.01.T01 AT5G45050 42.500 80 40 3 108 187 1137 1210 4.80e-11 64.7
MsG0780041742.01.T01 AT5G45050 42.500 80 40 3 108 187 1165 1238 4.82e-11 64.7
MsG0780041742.01.T01 AT5G07100 47.458 59 28 1 124 182 233 288 5.40e-11 63.2
MsG0780041742.01.T01 AT5G07100 42.857 70 35 2 125 194 117 181 8.91e-11 62.4
MsG0780041742.01.T01 AT5G07100 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
MsG0780041742.01.T01 AT5G07100 42.857 70 35 2 125 194 24 88 9.02e-11 61.2
MsG0780041742.01.T01 AT5G07100 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
MsG0780041742.01.T01 AT5G07100 42.857 70 35 2 125 194 24 88 9.02e-11 61.2
MsG0780041742.01.T01 AT5G07100 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
MsG0780041742.01.T01 AT5G07100 42.857 70 35 2 125 194 24 88 9.02e-11 61.2
MsG0780041742.01.T01 AT5G07100 47.458 59 28 1 124 182 140 195 6.71e-11 61.6
MsG0780041742.01.T01 AT5G07100 42.857 70 35 2 125 194 24 88 9.02e-11 61.2
MsG0780041742.01.T01 AT2G21900 40.299 67 37 1 123 189 107 170 7.45e-11 61.2
MsG0780041742.01.T01 AT2G40740 45.902 61 33 0 145 205 149 209 7.68e-11 62.0
MsG0780041742.01.T01 AT5G43290 40.541 111 50 5 120 224 109 209 9.52e-11 62.0

Find 69 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTATGATGACCTCACTTT+TGG 0.188414 7:+94626489 None:intergenic
TCAACATAGTAAGTGCTTTC+TGG 0.207919 7:+94626587 None:intergenic
TCCCTCAAAGTTAAAGATAA+AGG 0.227041 7:-94625290 MsG0780041742.01.T01:CDS
CTCAAGCTAAGCCTTTAAAA+AGG 0.231958 7:-94625318 MsG0780041742.01.T01:CDS
ATTCTGAAGTTGGTCCATTT+TGG 0.232813 7:+94625032 None:intergenic
CAAGAATTCATTGGTTTCAT+TGG 0.239108 7:+94626633 None:intergenic
TTCACTTGTTCCTTCCATTT+AGG 0.269402 7:+94626139 None:intergenic
CAATTCACCAATCCTTGATT+TGG 0.271018 7:-94624969 MsG0780041742.01.T01:CDS
CATTGGATGATATAATTATA+TGG 0.275590 7:+94626650 None:intergenic
AGGATTATCTGAAGGGTCTT+TGG 0.285031 7:-94626101 MsG0780041742.01.T01:CDS
CCGAGGGAAAATACCCTCTT+TGG 0.291656 7:+94625156 None:intergenic
CTTTCCTTGGATTAATTCAT+TGG 0.302740 7:+94626696 None:intergenic
CAAATCAAGGATTGGTGAAT+TGG 0.310097 7:+94624970 None:intergenic
CCCTCAAAGTTAAAGATAAA+GGG 0.333691 7:-94625289 MsG0780041742.01.T01:CDS
CCCTTTATCTTTAACTTTGA+GGG 0.337711 7:+94625289 None:intergenic
GCAGAAAGAGCATGCCTAAA+TGG 0.338464 7:-94626153 MsG0780041742.01.T01:intron
TATGGTCAAAAGGATATTCT+TGG 0.360560 7:-94626055 MsG0780041742.01.T01:CDS
GAATATAGCTGGAGAAAATA+TGG 0.367378 7:-94626073 MsG0780041742.01.T01:CDS
GCCCTTTATCTTTAACTTTG+AGG 0.367772 7:+94625288 None:intergenic
TACAATGGATTATGCCAAAA+TGG 0.369767 7:-94625046 MsG0780041742.01.T01:CDS
TTTGAACCTGCTTTGTTGCT+AGG 0.370195 7:+94625404 None:intergenic
TAAGTTACCTCAATTATTGT+TGG 0.376442 7:+94625367 None:intergenic
TTTGTCAATCAAGAATTCAT+TGG 0.407531 7:+94626624 None:intergenic
GCTTTGCTAACTCCTTTCCT+TGG 0.408135 7:+94626683 None:intergenic
GGACTCTCGTTTGTAAAAGA+AGG 0.431784 7:+94626511 None:intergenic
TGGTTTGTCAGAATATCAAT+TGG 0.434536 7:-94625071 MsG0780041742.01.T01:CDS
GTGATATCAGATTCTGAAGT+TGG 0.434696 7:+94625022 None:intergenic
TACAGATGCACACATAGAAA+TGG 0.436912 7:-94625436 MsG0780041742.01.T01:CDS
TTTAACATCAAGTTCTGCCT+TGG 0.466903 7:+94625198 None:intergenic
GTAGCAAGATATCCAAATCA+AGG 0.467252 7:+94624957 None:intergenic
GGTGAATTGGTGACTGAAGT+TGG 0.470985 7:+94624983 None:intergenic
CTGGAGAAAATATGGTCAAA+AGG 0.471109 7:-94626065 MsG0780041742.01.T01:CDS
GGAGAGACTAAGACCATTGA+TGG 0.480847 7:-94626553 MsG0780041742.01.T01:CDS
GACCATTGATGGTAAAATGA+AGG 0.490394 7:-94626542 MsG0780041742.01.T01:CDS
GGTTTGTCAGAATATCAATT+GGG 0.490887 7:-94625070 MsG0780041742.01.T01:CDS
TCTGATTCAATTGATGGAGA+AGG 0.500124 7:+94625124 None:intergenic
ACAATGCTCTCTTCAAGAAA+AGG 0.501466 7:-94626453 MsG0780041742.01.T01:intron
CTTTGGATGATGAATATAGC+TGG 0.515960 7:-94626084 MsG0780041742.01.T01:CDS
ATCAGAAAATGAGATAATGA+TGG 0.516212 7:-94625107 MsG0780041742.01.T01:CDS
AAGATATCCAAATCAAGGAT+TGG 0.527680 7:+94624962 None:intergenic
GAGCATTGTGGTTAAACTCC+TGG 0.533299 7:+94626467 None:intergenic
GAATATCAATTGGGCTACAA+TGG 0.533841 7:-94625061 MsG0780041742.01.T01:CDS
TGAAGATCCAACAATAATTG+AGG 0.540253 7:-94625374 MsG0780041742.01.T01:CDS
TGGATATCTTGCTACAAAGA+GGG 0.541575 7:-94624949 MsG0780041742.01.T01:CDS
AGAGACTAGTTTCACTTCCA+AGG 0.541625 7:-94625215 MsG0780041742.01.T01:CDS
GGATATCTTGCTACAAAGAG+GGG 0.557765 7:-94624948 MsG0780041742.01.T01:CDS
TTGGATATCTTGCTACAAAG+AGG 0.559016 7:-94624950 MsG0780041742.01.T01:CDS
TAGCAACAAAGCAGGTTCAA+AGG 0.565187 7:-94625402 MsG0780041742.01.T01:CDS
AAATATTCAGGAGTATTGAG+AGG 0.566440 7:+94624908 None:intergenic
CATAGTAAGTGCTTTCTGGT+AGG 0.575281 7:+94626591 None:intergenic
CAATGAATTAATCCAAGGAA+AGG 0.585373 7:-94626695 MsG0780041742.01.T01:CDS
CTTACTATGTTGAATGTGAG+AGG 0.591736 7:-94626577 MsG0780041742.01.T01:CDS
AATATTCAGGAGTATTGAGA+GGG 0.594267 7:+94624909 None:intergenic
AAAGAGCATGCCTAAATGGA+AGG 0.601574 7:-94626149 MsG0780041742.01.T01:CDS
GTGAAGATTTGCACAAACAC+AGG 0.602509 7:-94626121 MsG0780041742.01.T01:CDS
ATAACCAATGAATTAATCCA+AGG 0.604601 7:-94626700 MsG0780041742.01.T01:CDS
GAGAAGGAAAACAAAACCGA+GGG 0.610739 7:+94625140 None:intergenic
AGGGTGCCTAGCAACAAAGC+AGG 0.623925 7:-94625410 MsG0780041742.01.T01:CDS
ACAAACACAGGATTATCTGA+AGG 0.625241 7:-94626109 MsG0780041742.01.T01:CDS
AAGTGAGGTCATCATAGACC+AGG 0.627405 7:-94626485 MsG0780041742.01.T01:CDS
CAAACACAGGATTATCTGAA+GGG 0.645284 7:-94626108 MsG0780041742.01.T01:CDS
AAACGAGAGTCCCAAAAGTG+AGG 0.654222 7:-94626500 MsG0780041742.01.T01:CDS
ATAATTGAGGTAACTTACAG+AGG 0.655185 7:-94625361 MsG0780041742.01.T01:CDS
GACTTAGAAGAAACCAAAGA+GGG 0.656480 7:-94625169 MsG0780041742.01.T01:CDS
GGAGAAGGAAAACAAAACCG+AGG 0.666774 7:+94625139 None:intergenic
ACTATGTTGAATGTGAGAGG+AGG 0.670945 7:-94626574 MsG0780041742.01.T01:CDS
TGACTTAGAAGAAACCAAAG+AGG 0.672282 7:-94625170 MsG0780041742.01.T01:CDS
TGCACACATAGAAATGGACA+AGG 0.697085 7:-94625430 MsG0780041742.01.T01:CDS
GCACACATAGAAATGGACAA+GGG 0.758330 7:-94625429 MsG0780041742.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTAATATTTGTTTTAG+TGG - Chr7:94625673-94625692 MsG0780041742.01.T01:intron 10.0%
!!! ACTTTTTTGTTAAATATTTA+AGG - Chr7:94625864-94625883 MsG0780041742.01.T01:intron 10.0%
!! AAATGATACTTGTAATAAAA+CGG - Chr7:94625353-94625372 MsG0780041742.01.T01:CDS 15.0%
!! CTATGTTAATAAAAAAGTTA+AGG + Chr7:94625279-94625298 None:intergenic 15.0%
!!! AAATGTTTTCACAATTTTAT+TGG - Chr7:94626153-94626172 MsG0780041742.01.T01:intron 15.0%
!!! ATTTTGTAACCAAAAAAATA+GGG + Chr7:94625837-94625856 None:intergenic 15.0%
!! ATCTTAAGTAATGAAATAGA+AGG + Chr7:94625913-94625932 None:intergenic 20.0%
!! CATTGGATGATATAATTATA+TGG + Chr7:94624984-94625003 None:intergenic 20.0%
!! TATGTAATCATTTGAATTTG+TGG - Chr7:94625454-94625473 MsG0780041742.01.T01:intron 20.0%
!!! CATTTTGTAACCAAAAAAAT+AGG + Chr7:94625838-94625857 None:intergenic 20.0%
!!! TTCAACATTTGTATTGTTTT+CGG - Chr7:94626044-94626063 MsG0780041742.01.T01:CDS 20.0%
!!! TTTTCACAATTTTATTGGTT+TGG - Chr7:94626158-94626177 MsG0780041742.01.T01:intron 20.0%
!!! TTTTGTAACCAAAAAAATAG+GGG + Chr7:94625836-94625855 None:intergenic 20.0%
! ATAACCAATGAATTAATCCA+AGG - Chr7:94624931-94624950 MsG0780041742.01.T01:CDS 25.0%
! ATCAGAAAATGAGATAATGA+TGG - Chr7:94626524-94626543 MsG0780041742.01.T01:CDS 25.0%
! TAAGTTACCTCAATTATTGT+TGG + Chr7:94626267-94626286 None:intergenic 25.0%
! TTTGTCAATCAAGAATTCAT+TGG + Chr7:94625010-94625029 None:intergenic 25.0%
!! CTAATTGAGCAATATTGATT+TGG + Chr7:94625804-94625823 None:intergenic 25.0%
!! TCATTTTCTGATTCAATTGA+TGG + Chr7:94626516-94626535 None:intergenic 25.0%
!!! AAGCGTTTTGAATTTGATAT+AGG - Chr7:94625711-94625730 MsG0780041742.01.T01:intron 25.0%
!!! ATGATGGAATCAAACTTTTT+TGG - Chr7:94626540-94626559 MsG0780041742.01.T01:CDS 25.0%
AAGATATCCAAATCAAGGAT+TGG + Chr7:94626672-94626691 None:intergenic 30.0%
ATAATTGAGGTAACTTACAG+AGG - Chr7:94626270-94626289 MsG0780041742.01.T01:intron 30.0%
CAATGAATTAATCCAAGGAA+AGG - Chr7:94624936-94624955 MsG0780041742.01.T01:CDS 30.0%
CCCTCAAAGTTAAAGATAAA+GGG - Chr7:94626342-94626361 MsG0780041742.01.T01:intron 30.0%
CTTTCCTTGGATTAATTCAT+TGG + Chr7:94624938-94624957 None:intergenic 30.0%
GAATATAGCTGGAGAAAATA+TGG - Chr7:94625558-94625577 MsG0780041742.01.T01:intron 30.0%
GGTTTGTCAGAATATCAATT+GGG - Chr7:94626561-94626580 MsG0780041742.01.T01:CDS 30.0%
TATGGTCAAAAGGATATTCT+TGG - Chr7:94625576-94625595 MsG0780041742.01.T01:intron 30.0%
TCCCTCAAAGTTAAAGATAA+AGG - Chr7:94626341-94626360 MsG0780041742.01.T01:intron 30.0%
TGAAGATCCAACAATAATTG+AGG - Chr7:94626257-94626276 MsG0780041742.01.T01:intron 30.0%
! AGAAGACAAAGTGCTTATTA+AGG - Chr7:94625994-94626013 MsG0780041742.01.T01:intron 30.0%
! ATCCTTCATTTTACCATCAA+TGG + Chr7:94625094-94625113 None:intergenic 30.0%
! CCCTTTATCTTTAACTTTGA+GGG + Chr7:94626345-94626364 None:intergenic 30.0%
! TCAAGCTAAGCCTTTAAAAA+GGG - Chr7:94626314-94626333 MsG0780041742.01.T01:intron 30.0%
! TGGTTTGTCAGAATATCAAT+TGG - Chr7:94626560-94626579 MsG0780041742.01.T01:CDS 30.0%
!! AAATATTCAGGAGTATTGAG+AGG + Chr7:94626726-94626745 None:intergenic 30.0%
!! AATATTCAGGAGTATTGAGA+GGG + Chr7:94626725-94626744 None:intergenic 30.0%
!! CAAGAATTCATTGGTTTCAT+TGG + Chr7:94625001-94625020 None:intergenic 30.0%
!! CAATATTGATTTGGTTAGCA+GGG + Chr7:94625795-94625814 None:intergenic 30.0%
!! TACAATGGATTATGCCAAAA+TGG - Chr7:94626585-94626604 MsG0780041742.01.T01:CDS 30.0%
!!! TACAATGACCCCTATTTTTT+TGG - Chr7:94625825-94625844 MsG0780041742.01.T01:intron 30.0%
ACAAACACAGGATTATCTGA+AGG - Chr7:94625522-94625541 MsG0780041742.01.T01:intron 35.0%
ACAATGCTCTCTTCAAGAAA+AGG - Chr7:94625178-94625197 MsG0780041742.01.T01:CDS 35.0%
ACTGAAATACGTTCAAGCTA+GGG + Chr7:94625435-94625454 None:intergenic 35.0%
CAAACACAGGATTATCTGAA+GGG - Chr7:94625523-94625542 MsG0780041742.01.T01:intron 35.0%
CAATTCACCAATCCTTGATT+TGG - Chr7:94626662-94626681 MsG0780041742.01.T01:CDS 35.0%
CTGGAGAAAATATGGTCAAA+AGG - Chr7:94625566-94625585 MsG0780041742.01.T01:intron 35.0%
CTTACTATGTTGAATGTGAG+AGG - Chr7:94625054-94625073 MsG0780041742.01.T01:CDS 35.0%
CTTTGGATGATGAATATAGC+TGG - Chr7:94625547-94625566 MsG0780041742.01.T01:intron 35.0%
GAATATCAATTGGGCTACAA+TGG - Chr7:94626570-94626589 MsG0780041742.01.T01:CDS 35.0%
GACTTAGAAGAAACCAAAGA+GGG - Chr7:94626462-94626481 MsG0780041742.01.T01:CDS 35.0%
GTAGCAAGATATCCAAATCA+AGG + Chr7:94626677-94626696 None:intergenic 35.0%
TACAGATGCACACATAGAAA+TGG - Chr7:94626195-94626214 MsG0780041742.01.T01:intron 35.0%
TACTGAAATACGTTCAAGCT+AGG + Chr7:94625436-94625455 None:intergenic 35.0%
TCAACATAGTAAGTGCTTTC+TGG + Chr7:94625047-94625066 None:intergenic 35.0%
TCTGATTCAATTGATGGAGA+AGG + Chr7:94626510-94626529 None:intergenic 35.0%
TGACTTAGAAGAAACCAAAG+AGG - Chr7:94626461-94626480 MsG0780041742.01.T01:CDS 35.0%
TGGATATCTTGCTACAAAGA+GGG - Chr7:94626682-94626701 MsG0780041742.01.T01:CDS 35.0%
TTCACTTGTTCCTTCCATTT+AGG + Chr7:94625495-94625514 None:intergenic 35.0%
TTCATGTGTGTGAATTGTCA+AGG - Chr7:94625409-94625428 MsG0780041742.01.T01:CDS 35.0%
TTGGATATCTTGCTACAAAG+AGG - Chr7:94626681-94626700 MsG0780041742.01.T01:CDS 35.0%
TTTAACATCAAGTTCTGCCT+TGG + Chr7:94626436-94626455 None:intergenic 35.0%
! CAAATCAAGGATTGGTGAAT+TGG + Chr7:94626664-94626683 None:intergenic 35.0%
! CTCAAGCTAAGCCTTTAAAA+AGG - Chr7:94626313-94626332 MsG0780041742.01.T01:intron 35.0%
! GACCATTGATGGTAAAATGA+AGG - Chr7:94625089-94625108 MsG0780041742.01.T01:CDS 35.0%
! GAGGGAAATTCCCTTTTTAA+AGG + Chr7:94626327-94626346 None:intergenic 35.0%
! GCCCTTTATCTTTAACTTTG+AGG + Chr7:94626346-94626365 None:intergenic 35.0%
! TTCTTGGAGCTAAGTTTTCA+AGG - Chr7:94625592-94625611 MsG0780041742.01.T01:intron 35.0%
!! CTTTTTAAAGGCTTAGCTTG+AGG + Chr7:94626315-94626334 None:intergenic 35.0%
!! GCAATATTGATTTGGTTAGC+AGG + Chr7:94625796-94625815 None:intergenic 35.0%
!! GTGATATCAGATTCTGAAGT+TGG + Chr7:94626612-94626631 None:intergenic 35.0%
!! TCTATGATGACCTCACTTTT+GGG + Chr7:94625144-94625163 None:intergenic 35.0%
!! TTTATTGGTTTGGATTGCAG+AGG - Chr7:94626168-94626187 MsG0780041742.01.T01:intron 35.0%
!!! ATTCTGAAGTTGGTCCATTT+TGG + Chr7:94626602-94626621 None:intergenic 35.0%
!!! TTTTCTTGAAGAGAGCATTG+TGG + Chr7:94625179-94625198 None:intergenic 35.0%
ACTATGTTGAATGTGAGAGG+AGG - Chr7:94625057-94625076 MsG0780041742.01.T01:CDS 40.0%
AGGATTATCTGAAGGGTCTT+TGG - Chr7:94625530-94625549 MsG0780041742.01.T01:intron 40.0%
GAGAAGGAAAACAAAACCGA+GGG + Chr7:94626494-94626513 None:intergenic 40.0%
GCACACATAGAAATGGACAA+GGG - Chr7:94626202-94626221 MsG0780041742.01.T01:intron 40.0%
GGACTCTCGTTTGTAAAAGA+AGG + Chr7:94625123-94625142 None:intergenic 40.0%
GGATATCTTGCTACAAAGAG+GGG - Chr7:94626683-94626702 MsG0780041742.01.T01:CDS 40.0%
GTGAAGATTTGCACAAACAC+AGG - Chr7:94625510-94625529 MsG0780041742.01.T01:intron 40.0%
TAGCAACAAAGCAGGTTCAA+AGG - Chr7:94626229-94626248 MsG0780041742.01.T01:intron 40.0%
TGCACACATAGAAATGGACA+AGG - Chr7:94626201-94626220 MsG0780041742.01.T01:intron 40.0%
TGTAAGCATCTTAGTGTCAC+AGG - Chr7:94625741-94625760 MsG0780041742.01.T01:intron 40.0%
! AAAGAGCATGCCTAAATGGA+AGG - Chr7:94625482-94625501 MsG0780041742.01.T01:intron 40.0%
! CATAGTAAGTGCTTTCTGGT+AGG + Chr7:94625043-94625062 None:intergenic 40.0%
! GTCTATGATGACCTCACTTT+TGG + Chr7:94625145-94625164 None:intergenic 40.0%
! TTTGAACCTGCTTTGTTGCT+AGG + Chr7:94626230-94626249 None:intergenic 40.0%
!! AGAGACTAGTTTCACTTCCA+AGG - Chr7:94626416-94626435 MsG0780041742.01.T01:intron 40.0%
AAACGAGAGTCCCAAAAGTG+AGG - Chr7:94625131-94625150 MsG0780041742.01.T01:CDS 45.0%
AAGTGAGGTCATCATAGACC+AGG - Chr7:94625146-94625165 MsG0780041742.01.T01:CDS 45.0%
GCTTTGCTAACTCCTTTCCT+TGG + Chr7:94624951-94624970 None:intergenic 45.0%
GGAGAAGGAAAACAAAACCG+AGG + Chr7:94626495-94626514 None:intergenic 45.0%
GGAGAGACTAAGACCATTGA+TGG - Chr7:94625078-94625097 MsG0780041742.01.T01:CDS 45.0%
GGTTAGCAGGGCTAAAAACA+GGG + Chr7:94625783-94625802 None:intergenic 45.0%
TGGTTAGCAGGGCTAAAAAC+AGG + Chr7:94625784-94625803 None:intergenic 45.0%
! GAGCATTGTGGTTAAACTCC+TGG + Chr7:94625167-94625186 None:intergenic 45.0%
! GCAGAAAGAGCATGCCTAAA+TGG - Chr7:94625478-94625497 MsG0780041742.01.T01:intron 45.0%
! GGTGAATTGGTGACTGAAGT+TGG + Chr7:94626651-94626670 None:intergenic 45.0%
!!! CCAAAGAGGGTATTTTCCCT+CGG - Chr7:94626475-94626494 MsG0780041742.01.T01:CDS 45.0%
!!! TATTATATTTGTTAATAATA+AGG - Chr7:94625945-94625964 MsG0780041742.01.T01:intron 5.0%
CCGAGGGAAAATACCCTCTT+TGG + Chr7:94626478-94626497 None:intergenic 50.0%
! AGGGTGCCTAGCAACAAAGC+AGG - Chr7:94626221-94626240 MsG0780041742.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 94624898 94626755 94624898 ID=MsG0780041742.01;Name=MsG0780041742.01
Chr7 mRNA 94624898 94626755 94624898 ID=MsG0780041742.01.T01;Parent=MsG0780041742.01;Name=MsG0780041742.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|3|0|333
Chr7 exon 94626454 94626755 94626454 ID=MsG0780041742.01.T01:exon:22631;Parent=MsG0780041742.01.T01
Chr7 exon 94626040 94626171 94626040 ID=MsG0780041742.01.T01:exon:22630;Parent=MsG0780041742.01.T01
Chr7 exon 94624898 94625465 94624898 ID=MsG0780041742.01.T01:exon:22629;Parent=MsG0780041742.01.T01
Chr7 CDS 94626454 94626755 94626454 ID=MsG0780041742.01.T01:cds;Parent=MsG0780041742.01.T01
Chr7 CDS 94626040 94626171 94626040 ID=MsG0780041742.01.T01:cds;Parent=MsG0780041742.01.T01
Chr7 CDS 94624898 94625465 94624898 ID=MsG0780041742.01.T01:cds;Parent=MsG0780041742.01.T01
Gene Sequence

>MsG0780041742.01.T01

ATGGAAGAGACTACAAAGAGAAAACGTGTTAGTATAACCAATGAATTAATCCAAGGAAAGGAGTTAGCAAAGCAGCTAAGTAACCATATAATTATATCATCCAATGAAACCAATGAATTCTTGATTGACAAAATAATTTCAACCTACCAGAAAGCACTTACTATGTTGAATGTGAGAGGAGGAGAGACTAAGACCATTGATGGTAAAATGAAGGATTCTCATCCTTCTTTTACAAACGAGAGTCCCAAAAGTGAGGTCATCATAGACCAGGAGTTTAACCACAATGCTCTCTTCAAGAAAAGAAAGAGCATGCCTAAATGGAAGGAACAAGTGAAGATTTGCACAAACACAGGATTATCTGAAGGGTCTTTGGATGATGAATATAGCTGGAGAAAATATGGTCAAAAGGATATTCTTGGAGCTAAGTTTTCAAGAGGATATTACAGATGCACACATAGAAATGGACAAGGGTGCCTAGCAACAAAGCAGGTTCAAAGGTCAGATGAAGATCCAACAATAATTGAGGTAACTTACAGAGGAAGACACACATGCACTCATCCTCAAGCTAAGCCTTTAAAAAGGGAATTTCCCTCAAAGTTAAAGATAAAGGGCTTAGAGAAAAATAAACTTCACAATGATAAAAAGAATCAACTACAAACTCAAGAGACTAGTTTCACTTCCAAGGCAGAACTTGATGTTAAAAGAAATGACTTAGAAGAAACCAAAGAGGGTATTTTCCCTCGGTTTTGTTTTCCTTCTCCATCAATTGAATCAGAAAATGAGATAATGATGGAATCAAACTTTTTTGGTTTGTCAGAATATCAATTGGGCTACAATGGATTATGCCAAAATGGACCAACTTCAGAATCTGATATCACTGATACAGTTTCAGCTCCAACTTCAGTCACCAATTCACCAATCCTTGATTTGGATATCTTGCTACAAAGAGGGGATTTTGACACTGATTTCCCTCTCAATACTCCTGAATATTTCTCTTCATAA

Protein sequence

>MsG0780041742.01.T01

MEETTKRKRVSITNELIQGKELAKQLSNHIIISSNETNEFLIDKIISTYQKALTMLNVRGGETKTIDGKMKDSHPSFTNESPKSEVIIDQEFNHNALFKKRKSMPKWKEQVKICTNTGLSEGSLDDEYSWRKYGQKDILGAKFSRGYYRCTHRNGQGCLATKQVQRSDEDPTIIEVTYRGRHTCTHPQAKPLKREFPSKLKIKGLEKNKLHNDKKNQLQTQETSFTSKAELDVKRNDLEETKEGIFPRFCFPSPSIESENEIMMESNFFGLSEYQLGYNGLCQNGPTSESDITDTVSAPTSVTNSPILDLDILLQRGDFDTDFPLNTPEYFSS*