AlfalfaGEDB | MsG0780040235.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040235.01

KEGG: -
GO: GO:0004672 GO:0005515 GO:0005524 GO:0006468
PFAM: PF07714

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040235.01.T01	XP_003624691.1	93.641	802	23	2	1	802	1	774	0	1520

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040235.01.T01	Q8LFN2	60.686	758	264	7	38	790	43	771	0	881

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040235.01.T01	Q2HVC0	93.641	802	23	2	1	802	1	774	0.0	1520

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048748.01	MsG0780040235.01	0.807308	5.385482e-50	2.989615e-47
MsG0080048940.01	MsG0780040235.01	0.800741	1.249923e-48	5.864878e-46
MsG0080049002.01	MsG0780040235.01	0.812039	5.181640e-51	3.258974e-48
MsG0180000017.01	MsG0780040235.01	0.803614	3.204820e-49	1.617811e-46
MsG0180000241.01	MsG0780040235.01	0.801051	1.080441e-48	5.110000e-46
MsG0180000489.01	MsG0780040235.01	0.836287	1.022238e-56	1.282601e-53
MsG0180000491.01	MsG0780040235.01	0.831651	1.479211e-55	1.615394e-52
MsG0180000942.01	MsG0780040235.01	0.831167	1.946474e-55	2.095295e-52
MsG0180001119.01	MsG0780040235.01	0.817496	3.199308e-52	2.333697e-49
MsG0180001548.01	MsG0780040235.01	0.808090	3.673213e-50	2.081157e-47

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PPI

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Gene1	Gene2	Type
MsG0780040235.01	MsG0280006349.01	PPI
MsG0780040235.01	MsG0080048815.01	PPI
MsG0880044803.01	MsG0780040235.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040235.01.T01	MTR_7g086420	93.641	802	23	2	1	802	1	774	0.0	1520
MsG0780040235.01.T01	MTR_6g027720	67.332	802	234	4	4	802	9	785	0.0	1083
MsG0780040235.01.T01	MTR_7g031470	38.529	802	425	13	6	783	8	765	4.38e-172	515
MsG0780040235.01.T01	MTR_6g023390	37.800	791	425	14	15	785	25	768	3.12e-169	508
MsG0780040235.01.T01	MTR_3g088930	37.694	772	424	12	20	777	25	753	2.71e-163	492
MsG0780040235.01.T01	MTR_8g468500	36.842	798	391	20	1	779	8	711	2.49e-146	447
MsG0780040235.01.T01	MTR_8g044230	51.538	390	155	6	406	792	475	833	5.27e-121	384
MsG0780040235.01.T01	MTR_8g044230	52.660	376	175	2	5	379	11	384	2.32e-116	372
MsG0780040235.01.T01	MTR_5g038600	34.717	795	368	21	3	778	14	676	1.65e-117	371
MsG0780040235.01.T01	MTR_1g100787	27.571	671	413	17	114	765	645	1261	6.01e-57	212

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040235.01.T01	AT3G03770	60.686	758	264	7	38	790	43	771	0.0	881
MsG0780040235.01.T01	AT3G03770	60.686	758	264	7	38	790	43	771	0.0	881
MsG0780040235.01.T01	AT3G03770	60.686	758	264	7	38	790	43	771	0.0	881
MsG0780040235.01.T01	AT5G14210	38.213	806	437	13	6	789	9	775	2.18e-175	524
MsG0780040235.01.T01	AT5G14210	37.956	822	448	14	6	789	9	806	2.02e-174	523
MsG0780040235.01.T01	AT5G14210	38.154	726	389	12	6	709	9	696	6.02e-153	466
MsG0780040235.01.T01	AT1G14390	36.620	781	381	17	20	779	28	715	7.82e-143	438
MsG0780040235.01.T01	AT2G02780	35.302	796	402	18	20	789	28	736	2.02e-135	419
MsG0780040235.01.T01	AT2G02780	35.552	706	343	17	20	700	28	646	8.64e-114	361
MsG0780040235.01.T01	AT5G63410	35.079	630	344	16	173	782	94	678	1.23e-108	347

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Find 165 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTCTGCATCATTTG+TGG	0.408974	7:-74745247	None:intergenic
AAAGAACTTGTACTAATCTG+AGG	0.604752	7:-74745916	None:intergenic
AAATCTTCAAGTACTTGAAT+TGG	0.322075	7:+74742152	MsG0780040235.01.T01:CDS
AACAAGCTTAGGAGCTGATG+AGG	0.612825	7:+74745546	MsG0780040235.01.T01:CDS
AACATTCTAGTATCAATAAA+AGG	0.320542	7:+74744995	MsG0780040235.01.T01:CDS
AACCAACACAAGAAACACAG+AGG	0.771038	7:-74741500	None:intergenic
AAGCATGCCTTGCGGATTGC+TGG	0.343069	7:-74745592	None:intergenic
AAGGCTTCCGTGTGGCAAGA+AGG	0.553587	7:-74742570	None:intergenic
AAGTACAGGATGCTTGGAGA+GGG	0.558592	7:+74745725	MsG0780040235.01.T01:CDS
AAGTGTGATATATATGACTT+TGG	0.524536	7:+74745183	MsG0780040235.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAACTTGTACTAATCTG+AGG	-	Chr7:74745919-74745938	None:intergenic	30.0%
AACTCAAGTGTAAATAAGCA+TGG	-	Chr7:74743363-74743382	None:intergenic	30.0%
AATGAAAAACTCCTATAGGT+TGG	-	Chr7:74742983-74743002	None:intergenic	30.0%
AATTTGTGATGATATGGAAG+TGG	-	Chr7:74743081-74743100	None:intergenic	30.0%
ACATAACTTCTTGAAATTGC+AGG	+	Chr7:74741401-74741420	MsG0780040235.01.T01:intron	30.0%
ACATTTCCATTCATATCCTA+TGG	-	Chr7:74745072-74745091	None:intergenic	30.0%
ACCAAACTAATTTGATCACA+CGG	+	Chr7:74743412-74743431	MsG0780040235.01.T01:intron	30.0%
ACTTCTCCAAAACATGAATA+TGG	-	Chr7:74740869-74740888	None:intergenic	30.0%
AGAATTACACCCTCAAAATA+TGG	-	Chr7:74741024-74741043	None:intergenic	30.0%
AGTAGTTGAGTTATAATGCT+TGG	+	Chr7:74741327-74741346	MsG0780040235.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	74739542	74746006	74739542	ID=MsG0780040235.01;Name=MsG0780040235.01
Chr7	mRNA	74739542	74746006	74739542	ID=MsG0780040235.01.T01;Parent=MsG0780040235.01;Name=MsG0780040235.01.T01;_AED=0.48;_eAED=0.48;_QI=262\|0.77\|0.9\|1\|0.77\|0.7\|10\|193\|802
Chr7	exon	74739542	74739648	74739542	ID=MsG0780040235.01.T01:exon:14575;Parent=MsG0780040235.01.T01
Chr7	exon	74739773	74739854	74739773	ID=MsG0780040235.01.T01:exon:14576;Parent=MsG0780040235.01.T01
Chr7	exon	74741423	74742816	74741423	ID=MsG0780040235.01.T01:exon:14577;Parent=MsG0780040235.01.T01
Chr7	exon	74742939	74743072	74742939	ID=MsG0780040235.01.T01:exon:14578;Parent=MsG0780040235.01.T01
Chr7	exon	74743536	74743776	74743536	ID=MsG0780040235.01.T01:exon:14579;Parent=MsG0780040235.01.T01
Chr7	exon	74743903	74743974	74743903	ID=MsG0780040235.01.T01:exon:14580;Parent=MsG0780040235.01.T01
Chr7	exon	74744665	74744867	74744665	ID=MsG0780040235.01.T01:exon:14581;Parent=MsG0780040235.01.T01
Chr7	exon	74744964	74745016	74744964	ID=MsG0780040235.01.T01:exon:14582;Parent=MsG0780040235.01.T01
Chr7	exon	74745167	74745278	74745167	ID=MsG0780040235.01.T01:exon:14583;Parent=MsG0780040235.01.T01
Chr7	exon	74745541	74746006	74745541	ID=MsG0780040235.01.T01:exon:14584;Parent=MsG0780040235.01.T01
Chr7	five_prime_UTR	74739542	74739648	74739542	ID=MsG0780040235.01.T01:five_prime_utr;Parent=MsG0780040235.01.T01
Chr7	five_prime_UTR	74739773	74739854	74739773	ID=MsG0780040235.01.T01:five_prime_utr;Parent=MsG0780040235.01.T01
Chr7	five_prime_UTR	74741423	74741495	74741423	ID=MsG0780040235.01.T01:five_prime_utr;Parent=MsG0780040235.01.T01
Chr7	CDS	74741496	74742816	74741496	ID=MsG0780040235.01.T01:cds;Parent=MsG0780040235.01.T01
Chr7	CDS	74742939	74743072	74742939	ID=MsG0780040235.01.T01:cds;Parent=MsG0780040235.01.T01
Chr7	CDS	74743536	74743776	74743536	ID=MsG0780040235.01.T01:cds;Parent=MsG0780040235.01.T01
Chr7	CDS	74743903	74743974	74743903	ID=MsG0780040235.01.T01:cds;Parent=MsG0780040235.01.T01
Chr7	CDS	74744665	74744867	74744665	ID=MsG0780040235.01.T01:cds;Parent=MsG0780040235.01.T01
Chr7	CDS	74744964	74745016	74744964	ID=MsG0780040235.01.T01:cds;Parent=MsG0780040235.01.T01
Chr7	CDS	74745167	74745278	74745167	ID=MsG0780040235.01.T01:cds;Parent=MsG0780040235.01.T01
Chr7	CDS	74745541	74745813	74745541	ID=MsG0780040235.01.T01:cds;Parent=MsG0780040235.01.T01
Chr7	three_prime_UTR	74745814	74746006	74745814	ID=MsG0780040235.01.T01:three_prime_utr;Parent=MsG0780040235.01.T01

Gene Sequence

>MsG0780040235.01.T01

ATGGCCTCTGTGTTTCTTGTGTTGGTTACTATTTTACTTTCTATAAATCATTCAGAACAGCTTCAATCCTCACACACTCAAACCCTCCTAAGAATTCAACAGCAATTGAACTTCCCTTCTGCTTTAAGCAATTGGAATAACTCCACAGATTTTTGCAACACAGACTCAAACTCTTCACTCACTATAGTATGCTATGAAGACACAATAACTCAACTTCACATAATAGGTGAAGGAAAAACTCCACCTCTCTCTAAAAATTTCTCAATTGATTCCTTTGTCACAACACTAGTAAAGCTTCCAAGTTTGAAAGTCCTCACATTGGTTTCTCTTGGTATATGGGGTCCATTACCGGGTAAAATCGCACGCCTTTCGTCGCTGGAAATTGTTAACATGAGTTCGAATCATCTCTACGGTTCAATCCCTATGGAGCTTTCATCACTCTCAAATCTTCAGACACTCATTCTTGACAGCAACATGTTTTCTGGTCAGGTTCCTATTTGGATTGATTTGCTTTCAGCCTTAACTGTATTGAGTTTGAAAAACAATTTGTTCAACGGATCACTACCGAATTCGGTTAGTAACTTGGAGAATTTGAGAATTCTTTCACTTTCTCATAACAAGTTATATGGTGTAGTACCTGATTTGAGTCATTTGCGAAATCTTCAAGTACTTGAATTGGATGATAATGTTTTTGGACCTCAGTTTCCTAAGCTTGGTAACAAGTTGGTTACTATAGTGCTAAGAAATAACATGTTCAGGTCAGGTATTCCTGCTGATGTGAGCTCATATCATCAGCTCGAGCGATTTGATATCTCATCAAATACATTTGTAGGGCCATTCCAACCAGCATTGTTGTCACTTCCTTCTATTGCTTACCTCAACATTTCTCGGAACAAATTAACCGGAATGCTCTTTGAGAATCTGTCTTGTAATTCTGAGCTTGAAGTTGTTGATTTATCATCAAATCTTTTGACTGGGAGCTTACCTAAATGTTTAGTTTCAAATTCTAGTGATAGAACTGTTTTGTATGCTAGAAATTGTCTCGAGACGACGAATCAAAATCAGCAGCCGCCGCCTTCTTGCCACACGGAAGCCTTAGCTGTGGGAATATTACCTGATAGAAAGAAGAAAAAACAAGTATCAAAGGTAGTTCTTACCCTTGGTATAGTAGGTGGAACTCTTGGAGGAGTAGCACTTGTTTTGCTGATTTTGTTTATTGTTAGAAGAGGAAATGCTAGAAGCAAAATGAAGAATCCTCCAACAAGATTAATATCGGAGAATGCAGCTTCTGGATACACCTCTAAGTTGCTTTCTGATGCAAGATATATATCTCAAACAAAGAAGTTTGGAGCACTTGGCCTGCCAACCTATAGGAGTTTTTCATTGGAAGAGATTGAGGCAGCTACAAACAACTTTGACACCGCTTCTTTAATGGGTGAAGATTCTTATGGAGAGATGTACAGAGGTCAGTTGAAGAATGGCTCAATTGTTGTTATTAGATGTATCAAAATGAAAAAAAGATACAGCACTCAAAATTTCATGCACCACATGGAGCTTATATCGAAACTTAGGCATCGTCATTTAGTCAGCGCTCTTGGACACTGCTTCGAATGTTCTTTAGAAGATTCAAGTGTCAGCAAAATATTTCTTGTCTTTGAATATGTACCAAATGGTACACTGAGGAGCTGGACATCTGAACGCCTTCAACATGCTCAGCTCACCAATGGAGCTATCTACATAGGAACTGGGGTTGAAGTTTGTAAAAATGATGGCCACACTGGAAAATCTCTGAATTGGACCCAACGCATTGGAGCTGCAATTGGAGTAGCAAAGGGAATCCAATTTTTGCATACAGGAATTGTCCCTGGTGTATATTCCAACAATATCAAAATAGAAGATATTTATTTGGATCACAATCTTGTTGCAAAAATTAGCAGTTATAATTTACCTCTGTTATCTAACATAGGAAAGGCTCGACGTGGAAGTTCTTCTGATGGATCCAAACATTCTAGTATCAATAAAAGTGGAAAGCATGAAGATAAGTGTGATATATATGACTTTGGAGTAATACTACTGGAAATCATTCTAGGAAGGACAATAAAGACCACAAATGATGCAGAAGCTTTTAAGGATTTGTTGCAAACAAGCTTAGGAGCTGATGAGGACGCTCGGAGGAGCATTATTGATCCAGCAATCCGCAAGGCATGCTTGGAACAATCACTGAAGACAATGACGGAGATATGTGTGAGGTGTATGATTAAAGAACCTGCAGAAAGGCCATCCATAGAGGATGTTTTGTGGAATTTGCAGTTTGCTGCTCAAGTACAGGATGCTTGGAGAGGGGATTCTCAAAGTAGTGAGGGGTCACCAGGTTCTCCTTTAGGGCCTCAAAGAACAGCCTTCCATTAA

Protein sequence

>MsG0780040235.01.T01

MASVFLVLVTILLSINHSEQLQSSHTQTLLRIQQQLNFPSALSNWNNSTDFCNTDSNSSLTIVCYEDTITQLHIIGEGKTPPLSKNFSIDSFVTTLVKLPSLKVLTLVSLGIWGPLPGKIARLSSLEIVNMSSNHLYGSIPMELSSLSNLQTLILDSNMFSGQVPIWIDLLSALTVLSLKNNLFNGSLPNSVSNLENLRILSLSHNKLYGVVPDLSHLRNLQVLELDDNVFGPQFPKLGNKLVTIVLRNNMFRSGIPADVSSYHQLERFDISSNTFVGPFQPALLSLPSIAYLNISRNKLTGMLFENLSCNSELEVVDLSSNLLTGSLPKCLVSNSSDRTVLYARNCLETTNQNQQPPPSCHTEALAVGILPDRKKKKQVSKVVLTLGIVGGTLGGVALVLLILFIVRRGNARSKMKNPPTRLISENAASGYTSKLLSDARYISQTKKFGALGLPTYRSFSLEEIEAATNNFDTASLMGEDSYGEMYRGQLKNGSIVVIRCIKMKKRYSTQNFMHHMELISKLRHRHLVSALGHCFECSLEDSSVSKIFLVFEYVPNGTLRSWTSERLQHAQLTNGAIYIGTGVEVCKNDGHTGKSLNWTQRIGAAIGVAKGIQFLHTGIVPGVYSNNIKIEDIYLDHNLVAKISSYNLPLLSNIGKARRGSSSDGSKHSSINKSGKHEDKCDIYDFGVILLEIILGRTIKTTNDAEAFKDLLQTSLGADEDARRSIIDPAIRKACLEQSLKTMTEICVRCMIKEPAERPSIEDVLWNLQFAAQVQDAWRGDSQSSEGSPGSPLGPQRTAFH*