AlfalfaGEDB | MsG0880045686.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045686.01

KEGG: K00430
GO: GO:0004601 GO:0006979 GO:0020037 GO:0042744 GO:0055114
PFAM: PF00141

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045686.01.T01	XP_003629389.1	95.899	317	3	1	1	317	26	332	0	624

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045686.01.T01	Q9FJZ9	75.478	314	67	1	2	315	30	333	1.91E-178	499

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045686.01.T01	G7LDV0	95.899	317	3	1	1	317	26	332	0.0	624

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048509.01	MsG0880045686.01	0.820675	6.052795e-53	4.820427e-50
MsG0080048953.01	MsG0880045686.01	0.817282	3.574452e-52	2.591942e-49
MsG0180000497.01	MsG0880045686.01	0.809625	1.724846e-50	1.017842e-47
MsG0180001358.01	MsG0880045686.01	0.800986	1.113925e-48	5.259846e-46
MsG0180003375.01	MsG0880045686.01	0.809690	1.670537e-50	9.874380e-48
MsG0180004121.01	MsG0880045686.01	0.831118	2.000957e-55	2.150756e-52
MsG0180004948.01	MsG0880045686.01	0.801760	7.735740e-49	3.724303e-46
MsG0180005757.01	MsG0880045686.01	0.812739	3.642989e-51	2.334769e-48
MsG0280008226.01	MsG0880045686.01	0.807162	5.782980e-50	3.197997e-47
MsG0280009770.01	MsG0880045686.01	0.803185	3.933485e-49	1.963861e-46

Showing 1 to 10 of 41 entries

Previous1 2 3 4 5Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0880045686.01	MsG0580027036.01	PPI

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045686.01.T01	MTR_8g076820	95.899	317	3	1	1	317	26	332	0.0	624
MsG0880045686.01.T01	MTR_5g021060	80.635	315	51	1	1	315	26	330	0.0	530
MsG0880045686.01.T01	MTR_1g022970	60.443	316	114	2	1	315	42	347	6.46e-130	374
MsG0880045686.01.T01	MTR_5g014100	54.375	320	123	5	5	315	26	331	1.06e-113	332
MsG0880045686.01.T01	MTR_3g072190	54.341	311	124	3	5	315	26	318	3.15e-107	315
MsG0880045686.01.T01	MTR_2g040000	51.250	320	140	3	1	316	25	332	3.70e-105	310
MsG0880045686.01.T01	MTR_7g093370	49.840	313	145	3	5	315	69	371	3.90e-105	312
MsG0880045686.01.T01	MTR_4g029170	52.381	315	130	5	3	315	25	321	5.06e-105	310
MsG0880045686.01.T01	MTR_2g084080	49.839	311	138	3	5	315	25	317	1.44e-104	308
MsG0880045686.01.T01	MTR_2g029830	48.562	313	150	2	5	316	28	330	5.98e-104	308

Showing 1 to 10 of 141 entries

Previous1 2 3 4 5…15Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045686.01.T01	AT5G66390	75.478	314	67	1	2	315	30	333	1.95e-179	499
MsG0880045686.01.T01	AT2G18150	68.810	311	87	1	5	315	36	336	1.09e-157	444
MsG0880045686.01.T01	AT4G36430	67.302	315	93	1	2	316	27	331	3.29e-156	440
MsG0880045686.01.T01	AT3G50990	66.559	311	94	1	5	315	41	341	1.88e-148	421
MsG0880045686.01.T01	AT2G18140	62.701	311	106	1	5	315	35	335	9.27e-143	406
MsG0880045686.01.T01	AT1G44970	62.739	314	106	2	3	315	43	346	1.92e-135	388
MsG0880045686.01.T01	AT2G35380	53.106	322	132	4	1	315	26	335	2.14e-110	324
MsG0880045686.01.T01	AT4G08780	52.063	315	138	3	5	316	24	328	4.42e-108	318
MsG0880045686.01.T01	AT4G08770	52.063	315	138	3	5	316	24	328	1.02e-107	318
MsG0880045686.01.T01	AT5G06720	50.962	312	142	2	5	315	32	333	3.04e-107	316

Showing 1 to 10 of 86 entries

Previous1 2 3 4 5…9Next

Find 79 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGAAGCAGCTATACG+AGG	0.700714	8:+62712542	None:intergenic
AAACATTAGAACAAATTGCA+GGG	0.636631	8:-62710834	MsG0880045686.01.T01:CDS
AAAGAAAAGATCATTTCTCT+CGG	0.552769	8:+62710919	None:intergenic
AAGAACCTATTGGCTTACAA+GGG	0.648661	8:-62711010	MsG0880045686.01.T01:CDS
AATACCACCTAAATGTGATG+TGG	0.574121	8:-62711487	MsG0880045686.01.T01:CDS
ACCTTGACTTTCCTATAGTG+TGG	0.568848	8:+62711206	None:intergenic
ACTCAATGTCCAAAATCTGG+TGG	0.654856	8:-62711094	MsG0880045686.01.T01:CDS
AGGTTCCTTTGCAACAGCGT+TGG	0.595415	8:+62712562	None:intergenic
AGTCAAGGTGCACCAGCTTT+AGG	0.378431	8:-62711192	MsG0880045686.01.T01:CDS
AGTCATAAAACTGTGGATAA+AGG	0.363575	8:+62712627	None:intergenic

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGTCATAAAACTGTGGATAA+AGG	+	Chr8:62710766-62710785	None:intergenic	30.0%
CAAATTTCGTGCAATTGTAA+AGG	-	Chr8:62712158-62712177	MsG0880045686.01.T01:CDS	30.0%
CAATTACTTCAAGAACCTAT+TGG	-	Chr8:62712370-62712389	MsG0880045686.01.T01:intron	30.0%
CATGAATAGTCATAAAACTG+TGG	+	Chr8:62710773-62710792	None:intergenic	30.0%
CTGACTAAATTCAAACTTCA+AGG	-	Chr8:62711649-62711668	MsG0880045686.01.T01:intron	30.0%
CTTGAAGTTTGAATTTAGTC+AGG	+	Chr8:62711651-62711670	None:intergenic	30.0%
GAAACATTAGAACAAATTGC+AGG	-	Chr8:62712555-62712574	MsG0880045686.01.T01:CDS	30.0%
TACCAAAAACTTTGATGTTG+CGG	-	Chr8:62710954-62710973	MsG0880045686.01.T01:CDS	30.0%
TTAACAATATTCTGAGCTTG+TGG	+	Chr8:62710797-62710816	None:intergenic	30.0%
AATACCACCTAAATGTGATG+TGG	-	Chr8:62711903-62711922	MsG0880045686.01.T01:intron	35.0%

Showing 1 to 10 of 115 entries

Previous1 2 3 4 5…12Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	62710598	62712814	62710598	ID=MsG0880045686.01;Name=MsG0880045686.01
Chr8	mRNA	62710598	62712814	62710598	ID=MsG0880045686.01.T01;Parent=MsG0880045686.01;Name=MsG0880045686.01.T01;_AED=0.48;_eAED=0.49;_QI=154\|0.5\|0.8\|1\|1\|1\|5\|219\|317
Chr8	exon	62710598	62711232	62710598	ID=MsG0880045686.01.T01:exon:23993;Parent=MsG0880045686.01.T01
Chr8	exon	62711487	62711516	62711487	ID=MsG0880045686.01.T01:exon:23992;Parent=MsG0880045686.01.T01
Chr8	exon	62711709	62711874	62711709	ID=MsG0880045686.01.T01:exon:23991;Parent=MsG0880045686.01.T01
Chr8	exon	62712104	62712295	62712104	ID=MsG0880045686.01.T01:exon:23990;Parent=MsG0880045686.01.T01
Chr8	exon	62712511	62712814	62712511	ID=MsG0880045686.01.T01:exon:23989;Parent=MsG0880045686.01.T01
Chr8	five_prime_UTR	62712661	62712814	62712661	ID=MsG0880045686.01.T01:five_prime_utr;Parent=MsG0880045686.01.T01
Chr8	CDS	62712511	62712660	62712511	ID=MsG0880045686.01.T01:cds;Parent=MsG0880045686.01.T01
Chr8	CDS	62712104	62712295	62712104	ID=MsG0880045686.01.T01:cds;Parent=MsG0880045686.01.T01
Chr8	CDS	62711709	62711874	62711709	ID=MsG0880045686.01.T01:cds;Parent=MsG0880045686.01.T01
Chr8	CDS	62711487	62711516	62711487	ID=MsG0880045686.01.T01:cds;Parent=MsG0880045686.01.T01
Chr8	CDS	62710817	62711232	62710817	ID=MsG0880045686.01.T01:cds;Parent=MsG0880045686.01.T01
Chr8	three_prime_UTR	62710598	62710816	62710598	ID=MsG0880045686.01.T01:three_prime_utr;Parent=MsG0880045686.01.T01

Gene Sequence

>MsG0880045686.01.T01

ATGGGTTCTTACCTTTATCCACAGTTTTATGACTATTCATGTCCACAAGCTCAGAATATTGTTAAGTCCATCCTTGCCAACGCTGTTGCAAAGGAACCTCGTATAGCTGCTTCACTTTTGAGACTTCATTTCCATGACTGTTTTGTCAAGGGTTGTGATGCTTCAATATTGTTAGATAACAGTGGAAGCATTATTAGTGAGAAGGGATCAAATCCTAACCGTAATTCAGCTAGAGGATTTGAGGTCATTGATGAAATTAAATATGCACTAGAAAAAGAATGTCCTCATACAGTGTCTTGTGCTGACATTCTGGCTATAGCTGCTAGAGATTCAACTGTTCTTGCTGGTGGACCAAACTGGGAAGTGCCTCTAGGCAGAAGAGACTCACTAGGTGCAAGCTTAAGTGGTTCCAACAACAACATTCCAGCCCCAAACAACACATTCCAGACAATCCTGACTAAATTCAAACTTCAAGGACTTGACATTGTTGATCTTGTTGCTCTTTCTGAATTTAAAATACCACCTAAATGTGATGTGGGGAGCCACACTATAGGAAAGTCAAGGTGCACCAGCTTTAGGCAAAGACTCTACAACCAAACTGGAAATGGCAAGCAAGATTACACTCTTGATCAATACTATGCTGCTGAATTGCGCACTCAATGTCCAAAATCTGGTGGTGACCAAAATCTGTTCTTCCTAGACTATGTCACACCAACAAAATTCGACAACAATTACTTCAAGAACCTATTGGCTTACAAGGGACTATTGAGCTCTGATGAAATTTTGTTGACAATGAATCAAGAATCAGCTGAGTTGGTGAAATTGTATGCCGAGAGAAATGATCTTTTCTTTGAGCAATTCGCGAAGTCTATGATCAAGATGGGAAATATATCTCCTTTGACAGGTTCAAGGGGAAACATTAGAACAAATTGCAGGGTGATTAATACTTGGTGA

Protein sequence

>MsG0880045686.01.T01

MGSYLYPQFYDYSCPQAQNIVKSILANAVAKEPRIAASLLRLHFHDCFVKGCDASILLDNSGSIISEKGSNPNRNSARGFEVIDEIKYALEKECPHTVSCADILAIAARDSTVLAGGPNWEVPLGRRDSLGASLSGSNNNIPAPNNTFQTILTKFKLQGLDIVDLVALSEFKIPPKCDVGSHTIGKSRCTSFRQRLYNQTGNGKQDYTLDQYYAAELRTQCPKSGGDQNLFFLDYVTPTKFDNNYFKNLLAYKGLLSSDEILLTMNQESAELVKLYAERNDLFFEQFAKSMIKMGNISPLTGSRGNIRTNCRVINTW*