Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880045960.01.T01 | AES90654.1 | 97.778 | 270 | 1 | 1 | 1 | 265 | 1 | 270 | 0 | 537 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880045960.01.T01 | Q9SZU7 | 77.323 | 269 | 56 | 1 | 1 | 264 | 1 | 269 | 4.69E-159 | 445 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880045960.01.T01 | G7JCS9 | 97.778 | 270 | 1 | 1 | 1 | 265 | 1 | 270 | 0.0 | 537 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048652.01 | MsG0880045960.01 | 0.801610 | 8.301795e-49 | 3.981725e-46 |
MsG0880043983.01 | MsG0880045960.01 | 0.800737 | 1.252644e-48 | 5.877009e-46 |
MsG0880045644.01 | MsG0880045960.01 | 0.815839 | 7.526738e-52 | 5.246390e-49 |
MsG0880045645.01 | MsG0880045960.01 | 0.823939 | 1.057065e-53 | 9.231922e-51 |
MsG0880045804.01 | MsG0880045960.01 | 0.804572 | 2.025714e-49 | 1.048068e-46 |
MsG0880045947.01 | MsG0880045960.01 | 0.827719 | 1.339571e-54 | 1.303831e-51 |
MsG0880045960.01 | MsG0880046693.01 | 0.814769 | 1.301655e-51 | 8.811636e-49 |
MsG0180002808.01 | MsG0880045960.01 | 0.837695 | 4.464746e-57 | 5.846478e-54 |
MsG0180004704.01 | MsG0880045960.01 | 0.807200 | 5.677506e-50 | 3.142781e-47 |
MsG0180005369.01 | MsG0880045960.01 | -0.811782 | 5.893845e-51 | 3.681585e-48 |
MsG0780040621.01 | MsG0880045960.01 | 0.806187 | 9.291626e-50 | 5.011240e-47 |
MsG0780041100.01 | MsG0880045960.01 | 0.807405 | 5.137721e-50 | 2.859207e-47 |
MsG0280010617.01 | MsG0880045960.01 | 0.802150 | 6.432079e-49 | 3.127685e-46 |
MsG0280010829.01 | MsG0880045960.01 | 0.839219 | 1.806321e-57 | 2.477850e-54 |
MsG0580025023.01 | MsG0880045960.01 | 0.825657 | 4.160203e-54 | 3.815737e-51 |
MsG0580025620.01 | MsG0880045960.01 | 0.804471 | 2.126605e-49 | 1.097383e-46 |
MsG0380016255.01 | MsG0880045960.01 | 0.809383 | 1.944116e-50 | 1.139826e-47 |
MsG0380017819.01 | MsG0880045960.01 | 0.803924 | 2.763527e-49 | 1.406286e-46 |
MsG0580027641.01 | MsG0880045960.01 | 0.817677 | 2.912511e-52 | 2.135005e-49 |
MsG0580028510.01 | MsG0880045960.01 | 0.820614 | 6.248244e-53 | 4.967894e-50 |
MsG0680030635.01 | MsG0880045960.01 | -0.815727 | 7.973355e-52 | 5.541295e-49 |
MsG0280007786.01 | MsG0880045960.01 | 0.813316 | 2.723133e-51 | 1.772399e-48 |
MsG0780037751.01 | MsG0880045960.01 | 0.803088 | 4.118260e-49 | 2.050908e-46 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0880045960.01 | MsG0680032516.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880045960.01.T01 | MTR_4g095310 | 97.778 | 270 | 1 | 1 | 1 | 265 | 1 | 270 | 0.0 | 537 |
MsG0880045960.01.T01 | MTR_5g016150 | 78.358 | 268 | 53 | 1 | 1 | 263 | 1 | 268 | 2.10e-163 | 455 |
MsG0880045960.01.T01 | MTR_1g018320 | 55.823 | 249 | 103 | 2 | 6 | 248 | 8 | 255 | 5.24e-103 | 301 |
MsG0880045960.01.T01 | MTR_3g045440 | 39.184 | 245 | 142 | 3 | 9 | 247 | 13 | 256 | 9.09e-64 | 201 |
MsG0880045960.01.T01 | MTR_6g086560 | 38.976 | 254 | 147 | 4 | 9 | 255 | 22 | 274 | 2.40e-61 | 195 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880045960.01.T01 | AT4G37470 | 77.323 | 269 | 56 | 1 | 1 | 264 | 1 | 269 | 4.78e-160 | 445 |
MsG0880045960.01.T01 | AT3G03990 | 56.048 | 248 | 103 | 2 | 6 | 248 | 8 | 254 | 6.41e-102 | 298 |
MsG0880045960.01.T01 | AT3G24420 | 42.339 | 248 | 135 | 4 | 7 | 247 | 13 | 259 | 1.67e-70 | 218 |
Find 61 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTCACAACGTGAAAGTTT+TGG | 0.271854 | 8:-66970298 | MsG0880045960.01.T01:CDS |
TTGGATTAATCAGTAACTTT+AGG | 0.290550 | 8:+66970346 | None:intergenic |
CGAGTTGATTCATGTATCTT+TGG | 0.295646 | 8:-66970063 | MsG0880045960.01.T01:CDS |
AGGATTTGAGCAAGAAGATT+TGG | 0.309415 | 8:-66969055 | MsG0880045960.01.T01:CDS |
CTCGCCGGACGTTGTTATTC+CGG | 0.318614 | 8:-66968698 | MsG0880045960.01.T01:CDS |
CGCTCAAAATCAAAGTAATC+TGG | 0.326618 | 8:+66970141 | None:intergenic |
CATTCTGTTTCTGCTATGAT+TGG | 0.327046 | 8:-66970036 | MsG0880045960.01.T01:CDS |
GAGCGTTATTCAACCTTAGA+AGG | 0.329474 | 8:-66970123 | MsG0880045960.01.T01:CDS |
AATTACAAATCATGGTGTTC+TGG | 0.329664 | 8:-66969006 | MsG0880045960.01.T01:CDS |
AAATTGTTTGTAACACGCTT+AGG | 0.357437 | 8:+66968893 | None:intergenic |
ATCATAAGCATAACCTTCTA+AGG | 0.361019 | 8:+66970110 | None:intergenic |
GTTAAGGGGACTTGGGAGGG+TGG | 0.362712 | 8:+66970411 | None:intergenic |
TATGAAGGATCTAGCGGTTC+CGG | 0.394091 | 8:-66968809 | MsG0880045960.01.T01:CDS |
ATAGTTCTAGCTCACGGGTT+TGG | 0.396140 | 8:-66970258 | MsG0880045960.01.T01:CDS |
TTGGTTAAGGGGACTTGGGA+GGG | 0.411587 | 8:+66970408 | None:intergenic |
AATTGTTTGTAACACGCTTA+GGG | 0.419608 | 8:+66968894 | None:intergenic |
TGGCATCAAATTACAAATCA+TGG | 0.445032 | 8:-66969014 | MsG0880045960.01.T01:CDS |
AACGACAGGGACTACTTTGG+AGG | 0.459003 | 8:-66969075 | MsG0880045960.01.T01:intron |
GTTGATTCATGTATCTTTGG+TGG | 0.459912 | 8:-66970060 | MsG0880045960.01.T01:CDS |
GGATCTAGCGGTTCCGGTCG+TGG | 0.461437 | 8:-66968803 | MsG0880045960.01.T01:CDS |
GGATTTGCTCCAATGGCAGT+TGG | 0.462285 | 8:-66968985 | MsG0880045960.01.T01:CDS |
AGCGGTTCCGGTCGTGGTCG+CGG | 0.467057 | 8:-66968797 | MsG0880045960.01.T01:CDS |
ATGTCCCCTCCAACTGCCAT+TGG | 0.469708 | 8:+66968976 | None:intergenic |
GGATCAACTATTCGATGCTA+TGG | 0.479394 | 8:-66969034 | MsG0880045960.01.T01:CDS |
TTGAACGACAGGGACTACTT+TGG | 0.492694 | 8:-66969078 | MsG0880045960.01.T01:intron |
TGCTCCAATGGCAGTTGGAG+GGG | 0.510556 | 8:-66968980 | MsG0880045960.01.T01:CDS |
CCTTCATACTTTGTATAATG+TGG | 0.518604 | 8:+66968824 | None:intergenic |
TACTTTGTATAATGTGGCAT+GGG | 0.519899 | 8:+66968830 | None:intergenic |
TTTGGTTAAGGGGACTTGGG+AGG | 0.525703 | 8:+66970407 | None:intergenic |
AATGGCAGTTGGAGGGGACA+TGG | 0.527300 | 8:-66968974 | MsG0880045960.01.T01:CDS |
AGATACTCCGCGACCACGAC+CGG | 0.529415 | 8:+66968790 | None:intergenic |
GTGTTCTGGATTTGCTCCAA+TGG | 0.532527 | 8:-66968992 | MsG0880045960.01.T01:CDS |
GGTTCATAGTTCTAGCTCAC+GGG | 0.534969 | 8:-66970263 | MsG0880045960.01.T01:CDS |
TTGGCACAGATCAATCTGTA+TGG | 0.535156 | 8:-66970239 | MsG0880045960.01.T01:CDS |
ATCACCGGAATAACAACGTC+CGG | 0.537857 | 8:+66968694 | None:intergenic |
CCACATTATACAAAGTATGA+AGG | 0.538729 | 8:-66968824 | MsG0880045960.01.T01:CDS |
TTTGCTCCAATGGCAGTTGG+AGG | 0.538790 | 8:-66968982 | MsG0880045960.01.T01:CDS |
ATACTTTGTATAATGTGGCA+TGG | 0.539342 | 8:+66968829 | None:intergenic |
CTTTATGACAACATGGGAGC+TGG | 0.543266 | 8:-66970174 | MsG0880045960.01.T01:CDS |
TTGCTCCAATGGCAGTTGGA+GGG | 0.545271 | 8:-66968981 | MsG0880045960.01.T01:CDS |
CGAATGTGTTTGAGTATCAC+CGG | 0.546328 | 8:+66968679 | None:intergenic |
CGGTTCATAGTTCTAGCTCA+CGG | 0.558590 | 8:-66970264 | MsG0880045960.01.T01:CDS |
AACACGCTTAGGGCTATGTC+TGG | 0.562881 | 8:+66968904 | None:intergenic |
ACTCGCTACCAACATGTTGG+TGG | 0.576429 | 8:+66968767 | None:intergenic |
ACACATTCGTCATGATATTG+CGG | 0.602861 | 8:-66968665 | MsG0880045960.01.T01:CDS |
TTTGCCGCAGTTAAGCTCGC+CGG | 0.607162 | 8:-66968713 | MsG0880045960.01.T01:CDS |
TGGACTCGCTACCAACATGT+TGG | 0.613943 | 8:+66968764 | None:intergenic |
CATGAGACAAATATTATGCA+TGG | 0.615267 | 8:-66968860 | MsG0880045960.01.T01:CDS |
TGTCATACTTTATGACAACA+TGG | 0.621368 | 8:-66970181 | MsG0880045960.01.T01:CDS |
CATCGTGGAGGTTATGTCGA+CGG | 0.640034 | 8:-66968743 | MsG0880045960.01.T01:CDS |
CGTGGAGGTTATGTCGACGG+AGG | 0.645516 | 8:-66968740 | MsG0880045960.01.T01:CDS |
CGAAACTCATCTAAGAGATG+AGG | 0.649391 | 8:+66970204 | None:intergenic |
GAGTATCTCCACCAACATGT+TGG | 0.654467 | 8:-66968775 | MsG0880045960.01.T01:CDS |
ACAAAGTATGAAGGATCTAG+CGG | 0.659829 | 8:-66968815 | MsG0880045960.01.T01:CDS |
GTGGAGGTTATGTCGACGGA+GGG | 0.661408 | 8:-66968739 | MsG0880045960.01.T01:CDS |
GTCATACTTTATGACAACAT+GGG | 0.668133 | 8:-66970180 | MsG0880045960.01.T01:CDS |
CATCTAAGAGATGAGGTACG+AGG | 0.688542 | 8:+66970211 | None:intergenic |
TGTTGGTAGCGAGTCCATCG+TGG | 0.709388 | 8:-66968758 | MsG0880045960.01.T01:CDS |
ACGTCCGGCGAGCTTAACTG+CGG | 0.714820 | 8:+66968709 | None:intergenic |
TGGTAGCGAGTCCATCGTGG+AGG | 0.724029 | 8:-66968755 | MsG0880045960.01.T01:CDS |
CGTCGACATAACCTCCACGA+TGG | 0.726009 | 8:+66968744 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATTAGTCCAATATTTA+TGG | + | Chr8:66969335-66969354 | None:intergenic | 15.0% |
!! | ATTATTAATGATGTAAATGA+TGG | - | Chr8:66969977-66969996 | MsG0880045960.01.T01:CDS | 15.0% |
!! | TAATGTATCAATAGTTAATA+AGG | - | Chr8:66969749-66969768 | MsG0880045960.01.T01:intron | 15.0% |
!! | TTATTAATGATGTAAATGAT+GGG | - | Chr8:66969978-66969997 | MsG0880045960.01.T01:CDS | 15.0% |
!!! | TTTTGATCATTATATTATGT+AGG | - | Chr8:66969624-66969643 | MsG0880045960.01.T01:intron | 15.0% |
!! | ATTAATCCAACACAAAAAAT+GGG | - | Chr8:66968764-66968783 | MsG0880045960.01.T01:CDS | 20.0% |
!! | ATTATATTATGTAGGCATAT+TGG | - | Chr8:66969632-66969651 | MsG0880045960.01.T01:intron | 20.0% |
!! | GATAAAAATTATCTCTTGAA+AGG | + | Chr8:66969478-66969497 | None:intergenic | 20.0% |
!! | GATCAAAATAAAAACTACAT+AGG | + | Chr8:66969612-66969631 | None:intergenic | 20.0% |
!! | GATTAATCATTGTACAATAA+TGG | - | Chr8:66969228-66969247 | MsG0880045960.01.T01:intron | 20.0% |
!! | TAAATATCATATAGTTTGAG+TGG | - | Chr8:66969562-66969581 | MsG0880045960.01.T01:intron | 20.0% |
!! | TATTAATGATGTAAATGATG+GGG | - | Chr8:66969979-66969998 | MsG0880045960.01.T01:CDS | 20.0% |
!!! | ATAATTTTGTTGAATAGATC+AGG | + | Chr8:66969109-66969128 | None:intergenic | 20.0% |
!!! | GTATTTGTTTTTCTTTGTTT+TGG | + | Chr8:66968711-66968730 | None:intergenic | 20.0% |
!!! | TTTTTCTTTGTTTTGGTTAA+GGG | + | Chr8:66968704-66968723 | None:intergenic | 20.0% |
!!! | TTTTTTCTTTCTTTCATCTT+TGG | - | Chr8:66969812-66969831 | MsG0880045960.01.T01:intron | 20.0% |
!!! | TTTTTTGTCTCCATAAATAT+TGG | - | Chr8:66969322-66969341 | MsG0880045960.01.T01:intron | 20.0% |
! | ATTAATGATGTAAATGATGG+GGG | - | Chr8:66969980-66969999 | MsG0880045960.01.T01:CDS | 25.0% |
! | GATTAATCCAACACAAAAAA+TGG | - | Chr8:66968763-66968782 | MsG0880045960.01.T01:CDS | 25.0% |
! | TTAATCCAACACAAAAAATG+GGG | - | Chr8:66968765-66968784 | MsG0880045960.01.T01:CDS | 25.0% |
! | TTGGATTAATCAGTAACTTT+AGG | + | Chr8:66968754-66968773 | None:intergenic | 25.0% |
!! | TCAACAAAGTCTTATATTTG+AGG | + | Chr8:66969424-66969443 | None:intergenic | 25.0% |
!!! | GTTTTTCTTTGTTTTGGTTA+AGG | + | Chr8:66968705-66968724 | None:intergenic | 25.0% |
!!! | TAGTGCATCCTTTTTTTTAA+AGG | + | Chr8:66969780-66969799 | None:intergenic | 25.0% |
!!! | TTTAATTTGACCATATACCT+TGG | + | Chr8:66969148-66969167 | None:intergenic | 25.0% |
!!! | TTTTCTTTGTTTTGGTTAAG+GGG | + | Chr8:66968703-66968722 | None:intergenic | 25.0% |
AAATTGTTTGTAACACGCTT+AGG | + | Chr8:66970207-66970226 | None:intergenic | 30.0% | |
AATTACAAATCATGGTGTTC+TGG | - | Chr8:66970091-66970110 | MsG0880045960.01.T01:CDS | 30.0% | |
AATTGTTTGTAACACGCTTA+GGG | + | Chr8:66970206-66970225 | None:intergenic | 30.0% | |
ATACTTTGTATAATGTGGCA+TGG | + | Chr8:66970271-66970290 | None:intergenic | 30.0% | |
ATCATAAGCATAACCTTCTA+AGG | + | Chr8:66968990-66969009 | None:intergenic | 30.0% | |
CATGAGACAAATATTATGCA+TGG | - | Chr8:66970237-66970256 | MsG0880045960.01.T01:CDS | 30.0% | |
CCACATTATACAAAGTATGA+AGG | - | Chr8:66970273-66970292 | MsG0880045960.01.T01:CDS | 30.0% | |
CCTTCATACTTTGTATAATG+TGG | + | Chr8:66970276-66970295 | None:intergenic | 30.0% | |
GTCATACTTTATGACAACAT+GGG | - | Chr8:66968917-66968936 | MsG0880045960.01.T01:CDS | 30.0% | |
TACTTTGTATAATGTGGCAT+GGG | + | Chr8:66970270-66970289 | None:intergenic | 30.0% | |
TGGCATCAAATTACAAATCA+TGG | - | Chr8:66970083-66970102 | MsG0880045960.01.T01:CDS | 30.0% | |
TGTCATACTTTATGACAACA+TGG | - | Chr8:66968916-66968935 | MsG0880045960.01.T01:CDS | 30.0% | |
! | AGGATGCACCTTTAAAAAAA+AGG | - | Chr8:66969769-66969788 | MsG0880045960.01.T01:intron | 30.0% |
! | TTAATGATGTAAATGATGGG+GGG | - | Chr8:66969981-66970000 | MsG0880045960.01.T01:CDS | 30.0% |
ACAAAGTATGAAGGATCTAG+CGG | - | Chr8:66970282-66970301 | MsG0880045960.01.T01:CDS | 35.0% | |
ACACATTCGTCATGATATTG+CGG | - | Chr8:66970432-66970451 | MsG0880045960.01.T01:five_prime_UTR | 35.0% | |
AGGATTTGAGCAAGAAGATT+TGG | - | Chr8:66970042-66970061 | MsG0880045960.01.T01:CDS | 35.0% | |
CGCTCAAAATCAAAGTAATC+TGG | + | Chr8:66968959-66968978 | None:intergenic | 35.0% | |
! | GTTGATTCATGTATCTTTGG+TGG | - | Chr8:66969037-66969056 | MsG0880045960.01.T01:CDS | 35.0% |
! | TTTTGATATCAGCTTCTCCA+AGG | - | Chr8:66969128-66969147 | MsG0880045960.01.T01:intron | 35.0% |
!! | CATTCTGTTTCTGCTATGAT+TGG | - | Chr8:66969061-66969080 | MsG0880045960.01.T01:CDS | 35.0% |
!! | CGAGTTGATTCATGTATCTT+TGG | - | Chr8:66969034-66969053 | MsG0880045960.01.T01:CDS | 35.0% |
!!! | ACTATCCCCATTTTTTGTGT+TGG | + | Chr8:66968773-66968792 | None:intergenic | 35.0% |
ATCAGCTTCTCCAAGGTATA+TGG | - | Chr8:66969135-66969154 | MsG0880045960.01.T01:intron | 40.0% | |
CGAAACTCATCTAAGAGATG+AGG | + | Chr8:66968896-66968915 | None:intergenic | 40.0% | |
CGAATGTGTTTGAGTATCAC+CGG | + | Chr8:66970421-66970440 | None:intergenic | 40.0% | |
GAAGTGAGTGTGTGTGTATA+TGG | - | Chr8:66969889-66969908 | MsG0880045960.01.T01:intron | 40.0% | |
GAGCGTTATTCAACCTTAGA+AGG | - | Chr8:66968974-66968993 | MsG0880045960.01.T01:CDS | 40.0% | |
GGATCAACTATTCGATGCTA+TGG | - | Chr8:66970063-66970082 | MsG0880045960.01.T01:CDS | 40.0% | |
TTGGCACAGATCAATCTGTA+TGG | - | Chr8:66968858-66968877 | MsG0880045960.01.T01:CDS | 40.0% | |
! | AGCTCACAACGTGAAAGTTT+TGG | - | Chr8:66968799-66968818 | MsG0880045960.01.T01:CDS | 40.0% |
! | ATGTAAATGATGGGGGGATT+TGG | - | Chr8:66969987-66970006 | MsG0880045960.01.T01:CDS | 40.0% |
! | GCTCACAACGTGAAAGTTTT+GGG | - | Chr8:66968800-66968819 | MsG0880045960.01.T01:CDS | 40.0% |
! | TGTAAATGATGGGGGGATTT+GGG | - | Chr8:66969988-66970007 | MsG0880045960.01.T01:CDS | 40.0% |
!!! | AACGTGAAAGTTTTGGGTTC+AGG | - | Chr8:66968806-66968825 | MsG0880045960.01.T01:CDS | 40.0% |
!!! | ACGTGAAAGTTTTGGGTTCA+GGG | - | Chr8:66968807-66968826 | MsG0880045960.01.T01:CDS | 40.0% |
!!! | TGTTTTGGTTAAGGGGACTT+GGG | + | Chr8:66968696-66968715 | None:intergenic | 40.0% |
!!! | TTGTTTTGGTTAAGGGGACT+TGG | + | Chr8:66968697-66968716 | None:intergenic | 40.0% |
ATCACCGGAATAACAACGTC+CGG | + | Chr8:66970406-66970425 | None:intergenic | 45.0% | |
CATCTAAGAGATGAGGTACG+AGG | + | Chr8:66968889-66968908 | None:intergenic | 45.0% | |
CTTTATGACAACATGGGAGC+TGG | - | Chr8:66968923-66968942 | MsG0880045960.01.T01:CDS | 45.0% | |
GAGTATCTCCACCAACATGT+TGG | - | Chr8:66970322-66970341 | MsG0880045960.01.T01:exon | 45.0% | |
TATGAAGGATCTAGCGGTTC+CGG | - | Chr8:66970288-66970307 | MsG0880045960.01.T01:CDS | 45.0% | |
TTGAACGACAGGGACTACTT+TGG | - | Chr8:66970019-66970038 | MsG0880045960.01.T01:CDS | 45.0% | |
! | GTAAATGATGGGGGGATTTG+GGG | - | Chr8:66969989-66970008 | MsG0880045960.01.T01:CDS | 45.0% |
! | GTGTTCTGGATTTGCTCCAA+TGG | - | Chr8:66970105-66970124 | MsG0880045960.01.T01:CDS | 45.0% |
!! | ATAGTTCTAGCTCACGGGTT+TGG | - | Chr8:66968839-66968858 | MsG0880045960.01.T01:CDS | 45.0% |
!! | CGGTTCATAGTTCTAGCTCA+CGG | - | Chr8:66968833-66968852 | MsG0880045960.01.T01:CDS | 45.0% |
!! | GGGAAGGTATTTGAACGACA+GGG | - | Chr8:66970009-66970028 | MsG0880045960.01.T01:CDS | 45.0% |
!! | GGTTCATAGTTCTAGCTCAC+GGG | - | Chr8:66968834-66968853 | MsG0880045960.01.T01:CDS | 45.0% |
!!! | AAGTTTTGGGTTCAGGGTCA+CGG | - | Chr8:66968813-66968832 | MsG0880045960.01.T01:CDS | 45.0% |
!!! | AAATATTAATTTTATTCTTA+AGG | - | Chr8:66969696-66969715 | MsG0880045960.01.T01:intron | 5.0% |
!!! | TTAATTATAATATTGATTTT+AGG | - | Chr8:66969359-66969378 | MsG0880045960.01.T01:intron | 5.0% |
AACACGCTTAGGGCTATGTC+TGG | + | Chr8:66970196-66970215 | None:intergenic | 50.0% | |
AACGACAGGGACTACTTTGG+AGG | - | Chr8:66970022-66970041 | MsG0880045960.01.T01:CDS | 50.0% | |
ACTCGCTACCAACATGTTGG+TGG | + | Chr8:66970333-66970352 | None:intergenic | 50.0% | |
CATCGTGGAGGTTATGTCGA+CGG | - | Chr8:66970354-66970373 | MsG0880045960.01.T01:five_prime_UTR | 50.0% | |
TGGACTCGCTACCAACATGT+TGG | + | Chr8:66970336-66970355 | None:intergenic | 50.0% | |
TTGCTCCAATGGCAGTTGGA+GGG | - | Chr8:66970116-66970135 | MsG0880045960.01.T01:CDS | 50.0% | |
TTGGTTAAGGGGACTTGGGA+GGG | + | Chr8:66968692-66968711 | None:intergenic | 50.0% | |
TTTGCTCCAATGGCAGTTGG+AGG | - | Chr8:66970115-66970134 | MsG0880045960.01.T01:CDS | 50.0% | |
TTTGGTTAAGGGGACTTGGG+AGG | + | Chr8:66968693-66968712 | None:intergenic | 50.0% | |
! | GGATTTGCTCCAATGGCAGT+TGG | - | Chr8:66970112-66970131 | MsG0880045960.01.T01:CDS | 50.0% |
!! | GGGGAAGGTATTTGAACGAC+AGG | - | Chr8:66970008-66970027 | MsG0880045960.01.T01:CDS | 50.0% |
AATGGCAGTTGGAGGGGACA+TGG | - | Chr8:66970123-66970142 | MsG0880045960.01.T01:CDS | 55.0% | |
ATGTCCCCTCCAACTGCCAT+TGG | + | Chr8:66970124-66970143 | None:intergenic | 55.0% | |
CGTCGACATAACCTCCACGA+TGG | + | Chr8:66970356-66970375 | None:intergenic | 55.0% | |
GTGGAGGTTATGTCGACGGA+GGG | - | Chr8:66970358-66970377 | MsG0880045960.01.T01:five_prime_UTR | 55.0% | |
TGCTCCAATGGCAGTTGGAG+GGG | - | Chr8:66970117-66970136 | MsG0880045960.01.T01:CDS | 55.0% | |
TTTGCCGCAGTTAAGCTCGC+CGG | - | Chr8:66970384-66970403 | MsG0880045960.01.T01:five_prime_UTR | 55.0% | |
! | ATGATGGGGGGATTTGGGGA+AGG | - | Chr8:66969993-66970012 | MsG0880045960.01.T01:CDS | 55.0% |
! | CTCGCCGGACGTTGTTATTC+CGG | - | Chr8:66970399-66970418 | MsG0880045960.01.T01:five_prime_UTR | 55.0% |
!! | TGTTGGTAGCGAGTCCATCG+TGG | - | Chr8:66970339-66970358 | MsG0880045960.01.T01:five_prime_UTR | 55.0% |
ACGTCCGGCGAGCTTAACTG+CGG | + | Chr8:66970391-66970410 | None:intergenic | 60.0% | |
AGATACTCCGCGACCACGAC+CGG | + | Chr8:66970310-66970329 | None:intergenic | 60.0% | |
CGTGGAGGTTATGTCGACGG+AGG | - | Chr8:66970357-66970376 | MsG0880045960.01.T01:five_prime_UTR | 60.0% | |
GTTAAGGGGACTTGGGAGGG+TGG | + | Chr8:66968689-66968708 | None:intergenic | 60.0% | |
! | TGGTAGCGAGTCCATCGTGG+AGG | - | Chr8:66970342-66970361 | MsG0880045960.01.T01:five_prime_UTR | 60.0% |
GGATCTAGCGGTTCCGGTCG+TGG | - | Chr8:66970294-66970313 | MsG0880045960.01.T01:CDS | 65.0% | |
AGCGGTTCCGGTCGTGGTCG+CGG | - | Chr8:66970300-66970319 | MsG0880045960.01.T01:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 66968660 | 66970459 | 66968660 | ID=MsG0880045960.01;Name=MsG0880045960.01 |
Chr8 | mRNA | 66968660 | 66970459 | 66968660 | ID=MsG0880045960.01.T01;Parent=MsG0880045960.01;Name=MsG0880045960.01.T01;_AED=0.33;_eAED=0.34;_QI=122|0|0.5|1|1|1|2|0|265 |
Chr8 | exon | 66968660 | 66969089 | 66968660 | ID=MsG0880045960.01.T01:exon:570;Parent=MsG0880045960.01.T01 |
Chr8 | exon | 66969970 | 66970459 | 66969970 | ID=MsG0880045960.01.T01:exon:569;Parent=MsG0880045960.01.T01 |
Chr8 | five_prime_UTR | 66970338 | 66970459 | 66970338 | ID=MsG0880045960.01.T01:five_prime_utr;Parent=MsG0880045960.01.T01 |
Chr8 | CDS | 66969970 | 66970337 | 66969970 | ID=MsG0880045960.01.T01:cds;Parent=MsG0880045960.01.T01 |
Chr8 | CDS | 66968660 | 66969089 | 66968660 | ID=MsG0880045960.01.T01:cds;Parent=MsG0880045960.01.T01 |
Gene Sequence |
Protein sequence |