AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046693.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046693.01.T01 MTR_4g112990 83.793 290 37 2 1 280 1 290 9.79e-164 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046693.01.T01 AT5G19930 58.219 292 98 3 6 280 4 288 3.42e-104 305
MsG0880046693.01.T01 AT5G19930 58.219 292 98 3 6 280 4 288 3.42e-104 305

Find 89 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTCTGATTGTAGCTTTA+TGG 0.071257 8:-76838846 MsG0880046693.01.T01:CDS
ATCATTTCTGAAACCGAATT+TGG 0.106749 8:-76840050 MsG0880046693.01.T01:five_prime_UTR
CAAAGAGAAGAATAATAATT+TGG 0.231561 8:-76840236 MsG0880046693.01.T01:five_prime_UTR
TGTTCTGATTGTAGCTTTAT+GGG 0.234865 8:-76838845 MsG0880046693.01.T01:CDS
CAAATTATTATTCTTCTCTT+TGG 0.235908 8:+76840237 None:intergenic
GCTCTCATTGGTGGTGTTAT+TGG 0.255394 8:-76838766 MsG0880046693.01.T01:CDS
TCAGTTCTTGTATCCATATC+TGG 0.264005 8:-76837182 MsG0880046693.01.T01:three_prime_UTR
CGTGTTCCTCGTTGCCTATT+CGG 0.276192 8:-76840211 MsG0880046693.01.T01:five_prime_UTR
AAAGGAGGAAGCCAAATAAA+AGG 0.279137 8:-76837225 MsG0880046693.01.T01:three_prime_UTR
TCTTATTCTCGTTATAATAT+TGG 0.279429 8:+76840176 None:intergenic
AGCACTTCTGGTGCACTTGC+TGG 0.299865 8:-76839921 MsG0880046693.01.T01:CDS
GTGAGCTCTGAATGCGATTA+AGG 0.301312 8:+76839959 None:intergenic
TTGAGTGAGTTTCCCAAATT+CGG 0.341371 8:+76840037 None:intergenic
CCCTCTATGTTGTAGGTTGT+TGG 0.355656 8:-76837468 MsG0880046693.01.T01:intron
TCCTCGTTGCCTATTCGGTT+TGG 0.372588 8:-76840206 MsG0880046693.01.T01:five_prime_UTR
CGGATCCACTGAGAAATAGA+TGG 0.376312 8:+76840008 None:intergenic
CTCCATTGCAGCAGCAATAA+TGG 0.378209 8:+76838743 None:intergenic
GGCGCAACATTGCAATTTAG+TGG 0.386948 8:-76837603 MsG0880046693.01.T01:CDS
TTAATAACATGATGTGAGTT+TGG 0.388697 8:+76840146 None:intergenic
TCAAAGACTTGCTTGATAAG+AGG 0.393314 8:+76837247 None:intergenic
TCATTTCTGAAACCGAATTT+GGG 0.394912 8:-76840049 MsG0880046693.01.T01:five_prime_UTR
GGTTGCATTCCAAACCGAAT+AGG 0.409105 8:+76840197 None:intergenic
AAGTATCATTGACTCTCTAT+TGG 0.411402 8:-76837625 MsG0880046693.01.T01:CDS
TAGAATTCTCAAGCAACTAT+TGG 0.422184 8:-76837682 MsG0880046693.01.T01:CDS
AAAGAGGTTATTCACCTTGA+AGG 0.422918 8:+76838663 None:intergenic
TGTAATCGAATGATAGAATA+GGG 0.428013 8:-76837273 MsG0880046693.01.T01:three_prime_UTR
TAGAGCAGAATAATAAAGTA+TGG 0.431621 8:-76840274 MsG0880046693.01.T01:five_prime_UTR
GCCAAATAAAAGGGCGGAAA+GGG 0.442458 8:-76837215 MsG0880046693.01.T01:three_prime_UTR
GACACATGGTCTTCTGAGCT+TGG 0.442992 8:-76838721 MsG0880046693.01.T01:CDS
TTGTAATCGAATGATAGAAT+AGG 0.444371 8:-76837274 MsG0880046693.01.T01:three_prime_UTR
CCACTCCACCTCGTGGTAGT+TGG 0.455444 8:-76840113 MsG0880046693.01.T01:five_prime_UTR
AGTATCATTGACTCTCTATT+GGG 0.459444 8:-76837624 MsG0880046693.01.T01:CDS
ATAGAACTAGAAACCAGATA+TGG 0.463981 8:+76837169 None:intergenic
ATTTGGGAAACTCACTCAAA+TGG 0.468503 8:-76840033 MsG0880046693.01.T01:exon
TTCTCAGTGGATCCGACCAT+TGG 0.469540 8:-76840000 MsG0880046693.01.T01:CDS
GCAGCTGGTGGAAGTGTCAT+TGG 0.473800 8:-76837753 MsG0880046693.01.T01:CDS
TCGTCTAATCACAACCTTCA+AGG 0.476556 8:-76838677 MsG0880046693.01.T01:intron
TTAAACTTGTGCGGATGGAT+AGG 0.485463 8:-76839501 MsG0880046693.01.T01:CDS
GCTCTAATTACCGCTCTCAT+TGG 0.488116 8:-76838778 MsG0880046693.01.T01:CDS
GGACTTCTAGCAGCTGCAGC+TGG 0.498554 8:-76837768 MsG0880046693.01.T01:CDS
CCATTGGTTGCTGTCACTGT+TGG 0.504140 8:-76839984 MsG0880046693.01.T01:CDS
GATACAAGAACTGAATCAAA+AGG 0.504443 8:+76837191 None:intergenic
ATACCCCTCACTACCGTGGC+AGG 0.517394 8:-76837657 MsG0880046693.01.T01:CDS
AGCAATTGACGTTAAAATTG+TGG 0.527955 8:+76837362 None:intergenic
CCTGTGAGGAAGGGTACAAA+TGG 0.528132 8:-76837807 MsG0880046693.01.T01:CDS
CTAATTACCGCTCTCATTGG+TGG 0.531975 8:-76838775 MsG0880046693.01.T01:CDS
GGCCATTATTGCTGCTGCAA+TGG 0.538240 8:-76838745 MsG0880046693.01.T01:CDS
ATTGATTAAACTTGTGCGGA+TGG 0.539186 8:-76839506 MsG0880046693.01.T01:CDS
TAACATGATGTGAGTTTGGT+TGG 0.543010 8:+76840150 None:intergenic
CCATTTGTACCCTTCCTCAC+AGG 0.544901 8:+76837807 None:intergenic
TTATCAAGCAAGTCTTTGAA+AGG 0.549680 8:-76837243 MsG0880046693.01.T01:three_prime_UTR
CTTCTAGCAGCTGCAGCTGG+TGG 0.554176 8:-76837765 MsG0880046693.01.T01:CDS
AGCCAAATAAAAGGGCGGAA+AGG 0.558019 8:-76837216 MsG0880046693.01.T01:three_prime_UTR
TACCACGAGGTGGAGTGGAA+TGG 0.569946 8:+76840118 None:intergenic
TAAACTTGTGCGGATGGATA+GGG 0.570847 8:-76839500 MsG0880046693.01.T01:intron
GCTTTATGGGTACTAACAGA+AGG 0.570914 8:-76838832 MsG0880046693.01.T01:CDS
ATAGTCCTGCCACGGTAGTG+AGG 0.574585 8:+76837652 None:intergenic
AAGGAGGAAGCCAAATAAAA+GGG 0.578629 8:-76837224 MsG0880046693.01.T01:three_prime_UTR
TCAAGCAAGTCTTTGAAAGG+AGG 0.586218 8:-76837240 MsG0880046693.01.T01:three_prime_UTR
ACTACCGTGGCAGGACTATG+TGG 0.586247 8:-76837648 MsG0880046693.01.T01:CDS
TTGGAGTTCTCAGTAATGAT+CGG 0.586787 8:-76838702 MsG0880046693.01.T01:CDS
ATGGGTACTAACAGAAGGGA+AGG 0.594387 8:-76838827 MsG0880046693.01.T01:CDS
TAGTCCTGCCACGGTAGTGA+GGG 0.595711 8:+76837653 None:intergenic
TAATCGCATTCAGAGCTCAC+AGG 0.596274 8:-76839956 MsG0880046693.01.T01:CDS
CCAACTACCACGAGGTGGAG+TGG 0.600830 8:+76840113 None:intergenic
ATTCTGCTCTATTCGCCAGA+AGG 0.615062 8:-76837580 MsG0880046693.01.T01:intron
GTGCATGAACTCTAAAGACT+CGG 0.615281 8:-76838800 MsG0880046693.01.T01:CDS
CAAGTGCACCAGAAGTGCTG+AGG 0.620284 8:+76839925 None:intergenic
GGATCCACTGAGAAATAGAT+GGG 0.623325 8:+76840009 None:intergenic
AAGTGCACCAGAAGTGCTGA+GGG 0.630378 8:+76839926 None:intergenic
CTTTATGGGTACTAACAGAA+GGG 0.631113 8:-76838831 MsG0880046693.01.T01:CDS
TTGAAGGTTGTGATTAGACG+AGG 0.644573 8:+76838679 None:intergenic
TAGAATTGATTAAACTTGTG+CGG 0.649146 8:-76839510 MsG0880046693.01.T01:CDS
CAGTGACAGCAACCAATGGT+CGG 0.652095 8:+76839988 None:intergenic
CCAACAGTGACAGCAACCAA+TGG 0.662526 8:+76839984 None:intergenic
AGTCCTGCCACGGTAGTGAG+GGG 0.669040 8:+76837654 None:intergenic
TTCCATTCCACTCCACCTCG+TGG 0.671355 8:-76840120 MsG0880046693.01.T01:five_prime_UTR
GAGGAAGCCAAATAAAAGGG+CGG 0.673162 8:-76837221 MsG0880046693.01.T01:three_prime_UTR
ACTTCCACATAGTCCTGCCA+CGG 0.681568 8:+76837644 None:intergenic
AACAACCAACTACCACGAGG+TGG 0.685328 8:+76840108 None:intergenic
AATAACACCACCAATGAGAG+CGG 0.688307 8:+76838768 None:intergenic
TAAAGCTACAATCAGAACAG+AGG 0.688389 8:+76838849 None:intergenic
GGTCATACCCCTCACTACCG+TGG 0.698974 8:-76837661 MsG0880046693.01.T01:CDS
GTGAGGAAGGGTACAAATGG+TGG 0.703389 8:-76837804 MsG0880046693.01.T01:CDS
TGGACCCATCTATTTCTCAG+TGG 0.712343 8:-76840013 MsG0880046693.01.T01:CDS
GCTGCTGCAATGGAGACACA+TGG 0.733987 8:-76838735 MsG0880046693.01.T01:CDS
AATCGAATGATAGAATAGGG+CGG 0.751980 8:-76837270 MsG0880046693.01.T01:three_prime_UTR
TCCAAACCGAATAGGCAACG+AGG 0.761278 8:+76840205 None:intergenic
AAGAACAACCAACTACCACG+AGG 0.800597 8:+76840105 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTTTGTTGTTTAA+TGG - Chr8:76837566-76837585 MsG0880046693.01.T01:intron 10.0%
!! AAAACAAAATTGAAAATTTG+TGG + Chr8:76839200-76839219 None:intergenic 15.0%
!!! GTTTTTATTAATCATATTAC+AGG - Chr8:76838133-76838152 MsG0880046693.01.T01:intron 15.0%
!! AACGCTAAAAATTCTAATTA+GGG - Chr8:76838235-76838254 MsG0880046693.01.T01:intron 20.0%
!! ATAAAAGAAAAAGAGCAAAA+AGG + Chr8:76837760-76837779 None:intergenic 20.0%
!! CAAAGAGAAGAATAATAATT+TGG - Chr8:76837141-76837160 MsG0880046693.01.T01:three_prime_UTR 20.0%
!! CAAATTATTATTCTTCTCTT+TGG + Chr8:76837143-76837162 None:intergenic 20.0%
!! CTAATTAGTAAATGCAAATT+AGG + Chr8:76838779-76838798 None:intergenic 20.0%
!! TAAAAGAAAAAGAGCAAAAA+GGG + Chr8:76837759-76837778 None:intergenic 20.0%
!! TACATAAAAAAGCTAAAACT+TGG - Chr8:76838312-76838331 MsG0880046693.01.T01:intron 20.0%
!! TCTTATTCTCGTTATAATAT+TGG + Chr8:76837204-76837223 None:intergenic 20.0%
!!! AATGTTTTTGACATTGTAAA+AGG + Chr8:76839122-76839141 None:intergenic 20.0%
!!! CTAATTTGCATTTACTAATT+AGG - Chr8:76838777-76838796 MsG0880046693.01.T01:CDS 20.0%
!!! GAGTTTTTTTTACTATAAGA+TGG - Chr8:76837945-76837964 MsG0880046693.01.T01:intron 20.0%
!!! GATTACAAATTTTGAATTCT+TGG + Chr8:76840091-76840110 None:intergenic 20.0%
!!! TAATTGCAACAATTTTCTTT+TGG - Chr8:76838365-76838384 MsG0880046693.01.T01:intron 20.0%
!!! TTGATTTTCATTAATTTGCT+AGG - Chr8:76838845-76838864 MsG0880046693.01.T01:CDS 20.0%
!!! TTTTTTGAAAATTCAGTATC+CGG + Chr8:76838064-76838083 None:intergenic 20.0%
! AAATGCAAATTAGGAATAGA+AGG + Chr8:76838770-76838789 None:intergenic 25.0%
! AATTAAAAGAACAGAATGTG+AGG + Chr8:76839277-76839296 None:intergenic 25.0%
! AATTTGTGGATCCTTTATTA+AGG + Chr8:76839186-76839205 None:intergenic 25.0%
! ACATAAATGTATCCAACAAT+TGG - Chr8:76837986-76838005 MsG0880046693.01.T01:intron 25.0%
! ATTTGTGGATCCTTTATTAA+GGG + Chr8:76839185-76839204 None:intergenic 25.0%
! CTTATAAGTTATAACATCTG+TGG - Chr8:76839442-76839461 MsG0880046693.01.T01:intron 25.0%
! GAACGCTAAAAATTCTAATT+AGG - Chr8:76838234-76838253 MsG0880046693.01.T01:intron 25.0%
! TACATTTGAACAAAATCCAA+TGG - Chr8:76839859-76839878 MsG0880046693.01.T01:intron 25.0%
! TAGAATTGATTAAACTTGTG+CGG - Chr8:76837867-76837886 MsG0880046693.01.T01:intron 25.0%
! TAGAGCAGAATAATAAAGTA+TGG - Chr8:76837103-76837122 MsG0880046693.01.T01:three_prime_UTR 25.0%
! TGTAATCGAATGATAGAATA+GGG - Chr8:76840104-76840123 MsG0880046693.01.T01:five_prime_UTR 25.0%
! TTAATAACATGATGTGAGTT+TGG + Chr8:76837234-76837253 None:intergenic 25.0%
! TTGGATACATTTATGTAAGT+GGG + Chr8:76837982-76838001 None:intergenic 25.0%
! TTGTAATCGAATGATAGAAT+AGG - Chr8:76840103-76840122 MsG0880046693.01.T01:five_prime_UTR 25.0%
!! AATCAAATATCTAAAGCCAT+TGG + Chr8:76839878-76839897 None:intergenic 25.0%
!! AGCATCAGAATGATATTTTT+GGG - Chr8:76840264-76840283 MsG0880046693.01.T01:five_prime_UTR 25.0%
!! TAAAAACTAAGTTGAACGAA+TGG + Chr8:76838120-76838139 None:intergenic 25.0%
!! TATAACTTGAGGTTAGATTT+TGG - Chr8:76837923-76837942 MsG0880046693.01.T01:intron 25.0%
!! TCACAGCTTAAATATGTTTT+TGG - Chr8:76838995-76839014 MsG0880046693.01.T01:intron 25.0%
!! TCATTCATTCATTTTCAACA+AGG - Chr8:76837593-76837612 MsG0880046693.01.T01:CDS 25.0%
!!! ATGGTTTTTTTGTCACATTA+TGG - Chr8:76838427-76838446 MsG0880046693.01.T01:intron 25.0%
!!! GATTAGTTTTTCACATAAAG+TGG - Chr8:76839324-76839343 MsG0880046693.01.T01:intron 25.0%
AATATTAACCAAAACATCCC+TGG - Chr8:76838880-76838899 MsG0880046693.01.T01:intron 30.0%
AGCAATTGACGTTAAAATTG+TGG + Chr8:76840018-76840037 None:intergenic 30.0%
ATAGAACTAGAAACCAGATA+TGG + Chr8:76840211-76840230 None:intergenic 30.0%
ATGTAGTATAACTCAAGACA+AGG + Chr8:76837787-76837806 None:intergenic 30.0%
ATTGATCCTGAATTCAAACA+AGG - Chr8:76837691-76837710 MsG0880046693.01.T01:CDS 30.0%
CAAAAATATCATTCTGATGC+TGG + Chr8:76840265-76840284 None:intergenic 30.0%
CTACAATGGAATATAACTTG+AGG - Chr8:76837912-76837931 MsG0880046693.01.T01:intron 30.0%
GATACAAGAACTGAATCAAA+AGG + Chr8:76840189-76840208 None:intergenic 30.0%
GGGAAATTTATACCAAATTC+AGG + Chr8:76838465-76838484 None:intergenic 30.0%
GTAATGCCAATATGAGAAAA+AGG + Chr8:76839837-76839856 None:intergenic 30.0%
GTATCCTGAAAAAAACAGTA+GGG + Chr8:76838485-76838504 None:intergenic 30.0%
GTGTATCAAAATTTACCTTC+TGG + Chr8:76839815-76839834 None:intergenic 30.0%
GTTGGATACATTTATGTAAG+TGG + Chr8:76837983-76838002 None:intergenic 30.0%
TAGAATTCTCAAGCAACTAT+TGG - Chr8:76839695-76839714 MsG0880046693.01.T01:intron 30.0%
TATAACTTATAAGCCACTTG+TGG + Chr8:76839435-76839454 None:intergenic 30.0%
TGTATCCTGAAAAAAACAGT+AGG + Chr8:76838486-76838505 None:intergenic 30.0%
TGTCATATTAGCAGTTTACA+AGG - Chr8:76839302-76839321 MsG0880046693.01.T01:intron 30.0%
TTATCAAGCAAGTCTTTGAA+AGG - Chr8:76840134-76840153 MsG0880046693.01.T01:five_prime_UTR 30.0%
! ATGTTGTTGCTTAAACAAAG+AGG + Chr8:76838733-76838752 None:intergenic 30.0%
! CAGCATCAGAATGATATTTT+TGG - Chr8:76840263-76840282 MsG0880046693.01.T01:five_prime_UTR 30.0%
! GAGACCTGAAATCTTTTTAA+CGG + Chr8:76839949-76839968 None:intergenic 30.0%
! GATACACCTTTTTCTCATAT+TGG - Chr8:76839828-76839847 MsG0880046693.01.T01:intron 30.0%
! TTCACGTTTTTGTTGGATTT+AGG - Chr8:76837496-76837515 MsG0880046693.01.T01:intron 30.0%
! TTCATTTTCAACAAGGTTTG+CGG - Chr8:76837600-76837619 MsG0880046693.01.T01:CDS 30.0%
! TTCGTAATTTGTGATTGTGT+GGG - Chr8:76839050-76839069 MsG0880046693.01.T01:intron 30.0%
! TTTCGTAATTTGTGATTGTG+TGG - Chr8:76839049-76839068 MsG0880046693.01.T01:intron 30.0%
! TTTTAAGCTTAAACTGCTCA+GGG - Chr8:76839217-76839236 MsG0880046693.01.T01:intron 30.0%
!! AAGTATCATTGACTCTCTAT+TGG - Chr8:76839752-76839771 MsG0880046693.01.T01:intron 30.0%
!! AGTATCATTGACTCTCTATT+GGG - Chr8:76839753-76839772 MsG0880046693.01.T01:intron 30.0%
!! ATCATTTCTGAAACCGAATT+TGG - Chr8:76837327-76837346 MsG0880046693.01.T01:exon 30.0%
!! TCATTTCTGAAACCGAATTT+GGG - Chr8:76837328-76837347 MsG0880046693.01.T01:exon 30.0%
!! TGTTCTGATTGTAGCTTTAT+GGG - Chr8:76838532-76838551 MsG0880046693.01.T01:intron 30.0%
!! TTTTTAAGCTTAAACTGCTC+AGG - Chr8:76839216-76839235 MsG0880046693.01.T01:intron 30.0%
!!! ATTTCCCTACTGTTTTTTTC+AGG - Chr8:76838478-76838497 MsG0880046693.01.T01:intron 30.0%
!!! TTCTAGAACTTTTGACAATC+AGG - Chr8:76839661-76839680 MsG0880046693.01.T01:intron 30.0%
!!! TTTTTTCAGGATACAAGTTC+TGG - Chr8:76838491-76838510 MsG0880046693.01.T01:intron 30.0%
!!! TTTTTTGTCACATTATGGTG+AGG - Chr8:76838432-76838451 MsG0880046693.01.T01:intron 30.0%
AAAGAGGTTATTCACCTTGA+AGG + Chr8:76838717-76838736 None:intergenic 35.0%
AAAGGAGGAAGCCAAATAAA+AGG - Chr8:76840152-76840171 MsG0880046693.01.T01:five_prime_UTR 35.0%
AAGGAGGAAGCCAAATAAAA+GGG - Chr8:76840153-76840172 MsG0880046693.01.T01:five_prime_UTR 35.0%
AATCGAATGATAGAATAGGG+CGG - Chr8:76840107-76840126 MsG0880046693.01.T01:five_prime_UTR 35.0%
AATTCATCCCTCTATGTTGT+AGG - Chr8:76839902-76839921 MsG0880046693.01.T01:CDS 35.0%
ACACATTAGTTGAATGTTCC+AGG + Chr8:76838901-76838920 None:intergenic 35.0%
AGAATGTGAGGAATCATTTG+AGG + Chr8:76839265-76839284 None:intergenic 35.0%
AGCAAAAAGGGAACATAGAA+AGG + Chr8:76837747-76837766 None:intergenic 35.0%
ATCCCACAAGTACTAAAATG+TGG + Chr8:76838289-76838308 None:intergenic 35.0%
ATTGATTAAACTTGTGCGGA+TGG - Chr8:76837871-76837890 MsG0880046693.01.T01:intron 35.0%
ATTTGGGAAACTCACTCAAA+TGG - Chr8:76837344-76837363 MsG0880046693.01.T01:CDS 35.0%
CACATTAGTTGAATGTTCCA+GGG + Chr8:76838900-76838919 None:intergenic 35.0%
CCAACCGTTAAAAAGATTTC+AGG - Chr8:76839942-76839961 MsG0880046693.01.T01:CDS 35.0%
CTTTATGGGTACTAACAGAA+GGG - Chr8:76838546-76838565 MsG0880046693.01.T01:intron 35.0%
GAATGTGAGGAATCATTTGA+GGG + Chr8:76839264-76839283 None:intergenic 35.0%
GCAAAAAGGGAACATAGAAA+GGG + Chr8:76837746-76837765 None:intergenic 35.0%
GTTGTTACATTGTCATGGAA+AGG + Chr8:76839151-76839170 None:intergenic 35.0%
TAAAGCTACAATCAGAACAG+AGG + Chr8:76838531-76838550 None:intergenic 35.0%
TAACATGATGTGAGTTTGGT+TGG + Chr8:76837230-76837249 None:intergenic 35.0%
TACATTGTCATGGAAAGGAA+GGG + Chr8:76839146-76839165 None:intergenic 35.0%
TCAGTTCTTGTATCCATATC+TGG - Chr8:76840195-76840214 MsG0880046693.01.T01:five_prime_UTR 35.0%
TGGATCCTTTATTAAGGGTT+CGG + Chr8:76839180-76839199 None:intergenic 35.0%
TTACATTGTCATGGAAAGGA+AGG + Chr8:76839147-76839166 None:intergenic 35.0%
TTCTAAACTGCGAGTAATCT+TGG - Chr8:76838931-76838950 MsG0880046693.01.T01:intron 35.0%
TTGAGTGAGTTTCCCAAATT+CGG + Chr8:76837343-76837362 None:intergenic 35.0%
TTGGAGTTCTCAGTAATGAT+CGG - Chr8:76838675-76838694 MsG0880046693.01.T01:intron 35.0%
TTTAAGCTTAAACTGCTCAG+GGG - Chr8:76839218-76839237 MsG0880046693.01.T01:intron 35.0%
TTTATTAAGGGTTCGGATCA+GGG + Chr8:76839173-76839192 None:intergenic 35.0%
! AACTTTTGACAATCAGGTGT+GGG - Chr8:76839667-76839686 MsG0880046693.01.T01:intron 35.0%
! ATGTCTCTTCACGTTTTTGT+TGG - Chr8:76837489-76837508 MsG0880046693.01.T01:intron 35.0%
! CCTGAAATCTTTTTAACGGT+TGG + Chr8:76839945-76839964 None:intergenic 35.0%
! CTGTTCTGATTGTAGCTTTA+TGG - Chr8:76838531-76838550 MsG0880046693.01.T01:intron 35.0%
! TAATTAGGGTACTCTCTACA+GGG - Chr8:76838249-76838268 MsG0880046693.01.T01:intron 35.0%
! TCAAAGACTTGCTTGATAAG+AGG + Chr8:76840133-76840152 None:intergenic 35.0%
! TGATATTTTATCAGCCTGTG+AGG - Chr8:76839556-76839575 MsG0880046693.01.T01:CDS 35.0%
!! AAGCCACATTTTAGTACTTG+TGG - Chr8:76838283-76838302 MsG0880046693.01.T01:intron 35.0%
!! AGCCACATTTTAGTACTTGT+GGG - Chr8:76838284-76838303 MsG0880046693.01.T01:intron 35.0%
!! ATACATCTCCACTTTTGCAT+AGG - Chr8:76838212-76838231 MsG0880046693.01.T01:intron 35.0%
!! TTTGGTGTTCAGTTTGAGTT+TGG - Chr8:76838383-76838402 MsG0880046693.01.T01:intron 35.0%
!!! ATCTTTTTAACGGTTGGTCT+TGG + Chr8:76839939-76839958 None:intergenic 35.0%
AAAAATTCCCTCAGCACTTC+TGG - Chr8:76837444-76837463 MsG0880046693.01.T01:CDS 40.0%
AAAAGGGACAAGATACGAAG+CGG - Chr8:76837665-76837684 MsG0880046693.01.T01:CDS 40.0%
AACTCTAGTCTCTAGCCAAT+AGG + Chr8:76839382-76839401 None:intergenic 40.0%
AATAACACCACCAATGAGAG+CGG + Chr8:76838612-76838631 None:intergenic 40.0%
AATTTGTGATTGTGTGGGTG+TGG - Chr8:76839055-76839074 MsG0880046693.01.T01:intron 40.0%
ACATTGTCATGGAAAGGAAG+GGG + Chr8:76839145-76839164 None:intergenic 40.0%
ACGAATGGTGATCTTAGACT+TGG + Chr8:76838105-76838124 None:intergenic 40.0%
ATCCTGAATTAGTCCGTTTG+TGG - Chr8:76838037-76838056 MsG0880046693.01.T01:intron 40.0%
ATTTGTGATTGTGTGGGTGT+GGG - Chr8:76839056-76839075 MsG0880046693.01.T01:intron 40.0%
CCAACAACCTACAACATAGA+GGG + Chr8:76839912-76839931 None:intergenic 40.0%
CTGATCCGAACCCTTAATAA+AGG - Chr8:76839172-76839191 MsG0880046693.01.T01:intron 40.0%
CTTGGATGCATTCTTTGACT+TGG - Chr8:76838330-76838349 MsG0880046693.01.T01:intron 40.0%
CTTTATTAAGGGTTCGGATC+AGG + Chr8:76839174-76839193 None:intergenic 40.0%
GATCCTGAATTCAAACAAGG+TGG - Chr8:76837694-76837713 MsG0880046693.01.T01:CDS 40.0%
GCTTTATGGGTACTAACAGA+AGG - Chr8:76838545-76838564 MsG0880046693.01.T01:intron 40.0%
GGATCCACTGAGAAATAGAT+GGG + Chr8:76837371-76837390 None:intergenic 40.0%
GGCATCGCTAAATTGATTGA+GGG - Chr8:76838404-76838423 MsG0880046693.01.T01:intron 40.0%
TAAACTTGTGCGGATGGATA+GGG - Chr8:76837877-76837896 MsG0880046693.01.T01:intron 40.0%
TCAGGGTTGTTACATTGTCA+TGG + Chr8:76839156-76839175 None:intergenic 40.0%
TCCAACAACCTACAACATAG+AGG + Chr8:76839913-76839932 None:intergenic 40.0%
TCCTGAATTAGTCCGTTTGT+GGG - Chr8:76838038-76838057 MsG0880046693.01.T01:intron 40.0%
TCGCTAAATTGATTGAGGGA+TGG - Chr8:76838408-76838427 MsG0880046693.01.T01:intron 40.0%
TCGTCTAATCACAACCTTCA+AGG - Chr8:76838700-76838719 MsG0880046693.01.T01:CDS 40.0%
TCGTCTGCACTCACAAAAAA+GGG - Chr8:76837649-76837668 MsG0880046693.01.T01:CDS 40.0%
TGGCATCGCTAAATTGATTG+AGG - Chr8:76838403-76838422 MsG0880046693.01.T01:intron 40.0%
TTAAACTTGTGCGGATGGAT+AGG - Chr8:76837876-76837895 MsG0880046693.01.T01:intron 40.0%
TTAAGCTTAAACTGCTCAGG+GGG - Chr8:76839219-76839238 MsG0880046693.01.T01:intron 40.0%
TTAGCGTTCCTATGCAAAAG+TGG + Chr8:76838223-76838242 None:intergenic 40.0%
TTCAGTTGTAGCAGATAGAG+TGG - Chr8:76838822-76838841 MsG0880046693.01.T01:CDS 40.0%
TTCGTCTGCACTCACAAAAA+AGG - Chr8:76837648-76837667 MsG0880046693.01.T01:CDS 40.0%
TTGAAGGTTGTGATTAGACG+AGG + Chr8:76838701-76838720 None:intergenic 40.0%
TTTGTCACATTATGGTGAGG+CGG - Chr8:76838435-76838454 MsG0880046693.01.T01:intron 40.0%
! AATGGTGGTGTGACAAAAAC+AGG - Chr8:76839588-76839607 MsG0880046693.01.T01:intron 40.0%
! ATTTTATCAGCCTGTGAGGA+AGG - Chr8:76839560-76839579 MsG0880046693.01.T01:CDS 40.0%
! CTAATTAGGGTACTCTCTAC+AGG - Chr8:76838248-76838267 MsG0880046693.01.T01:intron 40.0%
! GAACTTTTGACAATCAGGTG+TGG - Chr8:76839666-76839685 MsG0880046693.01.T01:intron 40.0%
! GATACAAGTTCTGGCCAATA+GGG - Chr8:76838500-76838519 MsG0880046693.01.T01:intron 40.0%
! GGTTGACTTTGTCTCTACAA+TGG - Chr8:76837898-76837917 MsG0880046693.01.T01:intron 40.0%
! GTGCATGAACTCTAAAGACT+CGG - Chr8:76838577-76838596 MsG0880046693.01.T01:intron 40.0%
! TCAAGCAAGTCTTTGAAAGG+AGG - Chr8:76840137-76840156 MsG0880046693.01.T01:five_prime_UTR 40.0%
! TGAATGTTCCAGGGATGTTT+TGG + Chr8:76838891-76838910 None:intergenic 40.0%
! TGTCCACCTTGTTTGAATTC+AGG + Chr8:76837700-76837719 None:intergenic 40.0%
! TTTTATCAGCCTGTGAGGAA+GGG - Chr8:76839561-76839580 MsG0880046693.01.T01:CDS 40.0%
AACAAGGTGGACAACGAAAC+TGG - Chr8:76837707-76837726 MsG0880046693.01.T01:CDS 45.0%
AAGAACAACCAACTACCACG+AGG + Chr8:76837275-76837294 None:intergenic 45.0%
AGCCAAATAAAAGGGCGGAA+AGG - Chr8:76840161-76840180 MsG0880046693.01.T01:five_prime_UTR 45.0%
ATGGGTACTAACAGAAGGGA+AGG - Chr8:76838550-76838569 MsG0880046693.01.T01:intron 45.0%
ATTCTGCTCTATTCGCCAGA+AGG - Chr8:76839797-76839816 MsG0880046693.01.T01:intron 45.0%
ATTGAAAGGGCTGGGTCATT+AGG - Chr8:76839081-76839100 MsG0880046693.01.T01:intron 45.0%
CCCTCTATGTTGTAGGTTGT+TGG - Chr8:76839909-76839928 MsG0880046693.01.T01:CDS 45.0%
CGCGTAAGTCACATTCCTAT+TGG - Chr8:76839364-76839383 MsG0880046693.01.T01:intron 45.0%
CGGATCCACTGAGAAATAGA+TGG + Chr8:76837372-76837391 None:intergenic 45.0%
CTAATTACCGCTCTCATTGG+TGG - Chr8:76838602-76838621 MsG0880046693.01.T01:intron 45.0%
CTCCATTGCAGCAGCAATAA+TGG + Chr8:76838637-76838656 None:intergenic 45.0%
GAGGAAGCCAAATAAAAGGG+CGG - Chr8:76840156-76840175 MsG0880046693.01.T01:five_prime_UTR 45.0%
GCCAAATAAAAGGGCGGAAA+GGG - Chr8:76840162-76840181 MsG0880046693.01.T01:five_prime_UTR 45.0%
GCTCTAATTACCGCTCTCAT+TGG - Chr8:76838599-76838618 MsG0880046693.01.T01:intron 45.0%
GGAATCATTTGAGGGAGGTT+AGG + Chr8:76839256-76839275 None:intergenic 45.0%
GGCGCAACATTGCAATTTAG+TGG - Chr8:76839774-76839793 MsG0880046693.01.T01:intron 45.0%
GGTTGCATTCCAAACCGAAT+AGG + Chr8:76837183-76837202 None:intergenic 45.0%
TAATCGCATTCAGAGCTCAC+AGG - Chr8:76837421-76837440 MsG0880046693.01.T01:CDS 45.0%
TCAATACAATCGTCCACCAG+CGG + Chr8:76838018-76838037 None:intergenic 45.0%
TGTGAGGAATCATTTGAGGG+AGG + Chr8:76839261-76839280 None:intergenic 45.0%
! ACCCTTTCCGCCCTTTTATT+TGG + Chr8:76840166-76840185 None:intergenic 45.0%
! GGATACAAGTTCTGGCCAAT+AGG - Chr8:76838499-76838518 MsG0880046693.01.T01:intron 45.0%
! TGGACCCATCTATTTCTCAG+TGG - Chr8:76837364-76837383 MsG0880046693.01.T01:CDS 45.0%
! TGTGGCAGCATGGCATTTTA+AGG + Chr8:76839417-76839436 None:intergenic 45.0%
!! GCTCTCATTGGTGGTGTTAT+TGG - Chr8:76838611-76838630 MsG0880046693.01.T01:intron 45.0%
!! GTGAGCTCTGAATGCGATTA+AGG + Chr8:76837421-76837440 None:intergenic 45.0%
AAATGCCATGCTGCCACAAG+TGG - Chr8:76839419-76839438 MsG0880046693.01.T01:intron 50.0%
AACAACCAACTACCACGAGG+TGG + Chr8:76837272-76837291 None:intergenic 50.0%
AATACAATCGTCCACCAGCG+GGG + Chr8:76838016-76838035 None:intergenic 50.0%
ACTTCCACATAGTCCTGCCA+CGG + Chr8:76839736-76839755 None:intergenic 50.0%
ATAAGCCACTTGTGGCAGCA+TGG + Chr8:76839427-76839446 None:intergenic 50.0%
CAATACAATCGTCCACCAGC+GGG + Chr8:76838017-76838036 None:intergenic 50.0%
CAGTGACAGCAACCAATGGT+CGG + Chr8:76837392-76837411 None:intergenic 50.0%
CCAACAGTGACAGCAACCAA+TGG + Chr8:76837396-76837415 None:intergenic 50.0%
CCATTTGTACCCTTCCTCAC+AGG + Chr8:76839573-76839592 None:intergenic 50.0%
CGTGTTCCTCGTTGCCTATT+CGG - Chr8:76837166-76837185 MsG0880046693.01.T01:three_prime_UTR 50.0%
GAACAGAGGCAATGCCCTAT+TGG + Chr8:76838517-76838536 None:intergenic 50.0%
GAATTAGTCCGTTTGTGGGC+CGG - Chr8:76838042-76838061 MsG0880046693.01.T01:intron 50.0%
GACACATGGTCTTCTGAGCT+TGG - Chr8:76838656-76838675 MsG0880046693.01.T01:intron 50.0%
GGCCATTATTGCTGCTGCAA+TGG - Chr8:76838632-76838651 MsG0880046693.01.T01:intron 50.0%
GTGGGTGTGGGACATTGAAA+GGG - Chr8:76839068-76839087 MsG0880046693.01.T01:intron 50.0%
TCCAAACCGAATAGGCAACG+AGG + Chr8:76837175-76837194 None:intergenic 50.0%
TCCTCGTTGCCTATTCGGTT+TGG - Chr8:76837171-76837190 MsG0880046693.01.T01:three_prime_UTR 50.0%
TGAGGCGGTTGACCTGAATT+TGG - Chr8:76838450-76838469 MsG0880046693.01.T01:intron 50.0%
TGTGGGACATTGAAAGGGCT+GGG - Chr8:76839073-76839092 MsG0880046693.01.T01:intron 50.0%
TGTGGGTGTGGGACATTGAA+AGG - Chr8:76839067-76839086 MsG0880046693.01.T01:intron 50.0%
TTCAGTATCCGGCCCACAAA+CGG + Chr8:76838053-76838072 None:intergenic 50.0%
TTCTCAGTGGATCCGACCAT+TGG - Chr8:76837377-76837396 MsG0880046693.01.T01:CDS 50.0%
! CCATTGGTTGCTGTCACTGT+TGG - Chr8:76837393-76837412 MsG0880046693.01.T01:CDS 50.0%
! CCTGTGAGGAAGGGTACAAA+TGG - Chr8:76839570-76839589 MsG0880046693.01.T01:CDS 50.0%
! GTGAGGAAGGGTACAAATGG+TGG - Chr8:76839573-76839592 MsG0880046693.01.T01:CDS 50.0%
!! AAGTGCACCAGAAGTGCTGA+GGG + Chr8:76837454-76837473 None:intergenic 50.0%
!! GCCCACAAACGGACTAATTC+AGG + Chr8:76838042-76838061 None:intergenic 50.0%
ACTACCGTGGCAGGACTATG+TGG - Chr8:76839729-76839748 MsG0880046693.01.T01:intron 55.0%
AGCACTTCTGGTGCACTTGC+TGG - Chr8:76837456-76837475 MsG0880046693.01.T01:CDS 55.0%
ATACAATCGTCCACCAGCGG+GGG + Chr8:76838015-76838034 None:intergenic 55.0%
ATAGTCCTGCCACGGTAGTG+AGG + Chr8:76839728-76839747 None:intergenic 55.0%
GCTGCTGCAATGGAGACACA+TGG - Chr8:76838642-76838661 MsG0880046693.01.T01:intron 55.0%
GTGTGGGACATTGAAAGGGC+TGG - Chr8:76839072-76839091 MsG0880046693.01.T01:intron 55.0%
TACCACGAGGTGGAGTGGAA+TGG + Chr8:76837262-76837281 None:intergenic 55.0%
TAGTCCTGCCACGGTAGTGA+GGG + Chr8:76839727-76839746 None:intergenic 55.0%
TTCCATTCCACTCCACCTCG+TGG - Chr8:76837257-76837276 MsG0880046693.01.T01:three_prime_UTR 55.0%
!! CAAGTGCACCAGAAGTGCTG+AGG + Chr8:76837455-76837474 None:intergenic 55.0%
!! GCAGCTGGTGGAAGTGTCAT+TGG - Chr8:76839624-76839643 MsG0880046693.01.T01:intron 55.0%
AGTCCTGCCACGGTAGTGAG+GGG + Chr8:76839726-76839745 None:intergenic 60.0%
ATACCCCTCACTACCGTGGC+AGG - Chr8:76839720-76839739 MsG0880046693.01.T01:intron 60.0%
CCAACTACCACGAGGTGGAG+TGG + Chr8:76837267-76837286 None:intergenic 60.0%
CCACTCCACCTCGTGGTAGT+TGG - Chr8:76837264-76837283 MsG0880046693.01.T01:three_prime_UTR 60.0%
CTTCTAGCAGCTGCAGCTGG+TGG - Chr8:76839612-76839631 MsG0880046693.01.T01:intron 60.0%
GGACTTCTAGCAGCTGCAGC+TGG - Chr8:76839609-76839628 MsG0880046693.01.T01:intron 60.0%
GGTCATACCCCTCACTACCG+TGG - Chr8:76839716-76839735 MsG0880046693.01.T01:intron 60.0%
TACAATCGTCCACCAGCGGG+GGG + Chr8:76838014-76838033 None:intergenic 60.0%
ACAATCGTCCACCAGCGGGG+GGG + Chr8:76838013-76838032 None:intergenic 65.0%
CAACAATTGGACCCCCCCGC+TGG - Chr8:76837999-76838018 MsG0880046693.01.T01:intron 65.0%
CAGCGGGGGGGTCCAATTGT+TGG + Chr8:76838001-76838020 None:intergenic 65.0%
CAATTGGACCCCCCCGCTGG+TGG - Chr8:76838002-76838021 MsG0880046693.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 76837089 76840310 76837089 ID=MsG0880046693.01;Name=MsG0880046693.01
Chr8 mRNA 76837089 76840310 76837089 ID=MsG0880046693.01.T01;Parent=MsG0880046693.01;Name=MsG0880046693.01.T01;_AED=0.43;_eAED=0.47;_QI=274|0.5|0.4|1|0.5|0.4|5|255|280
Chr8 exon 76837089 76837475 76837089 ID=MsG0880046693.01.T01:exon:8646;Parent=MsG0880046693.01.T01
Chr8 exon 76837581 76837829 76837581 ID=MsG0880046693.01.T01:exon:8645;Parent=MsG0880046693.01.T01
Chr8 exon 76838678 76838878 76838678 ID=MsG0880046693.01.T01:exon:8644;Parent=MsG0880046693.01.T01
Chr8 exon 76839501 76839603 76839501 ID=MsG0880046693.01.T01:exon:8643;Parent=MsG0880046693.01.T01
Chr8 exon 76839879 76840310 76839879 ID=MsG0880046693.01.T01:exon:8642;Parent=MsG0880046693.01.T01
Chr8 five_prime_UTR 76840037 76840310 76840037 ID=MsG0880046693.01.T01:five_prime_utr;Parent=MsG0880046693.01.T01
Chr8 CDS 76839879 76840036 76839879 ID=MsG0880046693.01.T01:cds;Parent=MsG0880046693.01.T01
Chr8 CDS 76839501 76839603 76839501 ID=MsG0880046693.01.T01:cds;Parent=MsG0880046693.01.T01
Chr8 CDS 76838678 76838878 76838678 ID=MsG0880046693.01.T01:cds;Parent=MsG0880046693.01.T01
Chr8 CDS 76837581 76837829 76837581 ID=MsG0880046693.01.T01:cds;Parent=MsG0880046693.01.T01
Chr8 CDS 76837344 76837475 76837344 ID=MsG0880046693.01.T01:cds;Parent=MsG0880046693.01.T01
Chr8 three_prime_UTR 76837089 76837343 76837089 ID=MsG0880046693.01.T01:three_prime_utr;Parent=MsG0880046693.01.T01
Gene Sequence

>MsG0880046693.01.T01

ATGGACCCATCTATTTCTCAGTGGATCCGACCATTGGTTGCTGTCACTGTTGGTTCCTTAATCGCATTCAGAGCTCACAGGAAAAATTCCCTCAGCACTTCTGGTGCACTTGCTGGTTTCTTCGTTATGTCTCTTCACGTTTTTGTTGGATTTAGGTATTATACTACATTCATAGTGTTTATTAATTTTCTTTATGAAACAAACAATGTATTTATTGCATTCACAAGTGTAGAATTGATTAAACTTGTGCGGATGGATAGGGGCATTGCCTCTGTTCTGATTGTAGCTTTATGGGTACTAACAGAAGGGAAGGATCAGTGCATGAACTCTAAAGACTCGGCTCTAATTACCGCTCTCATTGGTGGTGTTATTGGCCATTATTGCTGCTGCAATGGAGACACATGGTCTTCTGAGCTTGGAGTTCTCAGTAATGATCGGCCTCGTCTAATCACAACCTTCAAGCCTGTGAGGAAGGGTACAAATGGTGGTGTGACAAAAACAGGACTTCTAGCAGCTGCAGCTGGTGGAAGTGTCATTGGAGTGTCGTATGTTCTTCTAGAACTTTTGACAATCAGGTGTGGGTCTGATAGAATTCTCAAGCAACTATTGGTCATACCCCTCACTACCGTGGCAGGACTATGTGGAAGTATCATTGACTCTCTATTGGGCGCAACATTGCAATTTAGTGGATTCTGCTCTATTCGCCAGAAGGTTGTTGGAAATCCAAGACCAACCGTTAAAAAGATTTCAGGTCTCAGTATTCTTGACAACAATGCAGTGAACTTTGTGTCAATACTATTGACCACAATTTTAACGTCAATTGCTTGTTTGTACATATTTTAA

Protein sequence

>MsG0880046693.01.T01

MDPSISQWIRPLVAVTVGSLIAFRAHRKNSLSTSGALAGFFVMSLHVFVGFRYYTTFIVFINFLYETNNVFIAFTSVELIKLVRMDRGIASVLIVALWVLTEGKDQCMNSKDSALITALIGGVIGHYCCCNGDTWSSELGVLSNDRPRLITTFKPVRKGTNGGVTKTGLLAAAAGGSVIGVSYVLLELLTIRCGSDRILKQLLVIPLTTVAGLCGSIIDSLLGATLQFSGFCSIRQKVVGNPRPTVKKISGLSILDNNAVNFVSILLTTILTSIACLYIF*