AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042026.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042026.01.T01 MTR_8g009700 72.727 154 9 1 3 123 102 255 1.91e-70 213
MsG0880042026.01.T01 MTR_8g009680 70.779 154 12 1 3 123 139 292 1.81e-69 211
MsG0880042026.01.T01 MTR_6g018680 34.677 124 47 2 2 92 497 619 3.33e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042026.01.T01 AT5G17660 43.590 156 49 3 2 123 133 283 6.61e-37 128

Find 79 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACTGCTTAAAAGAAAT+TGG 0.087540 8:-2776718 None:intergenic
ACATGATCTATTATTGAGTT+TGG 0.268662 8:+2775919 MsG0880042026.01.T01:five_prime_UTR
AATTAAGTGCGATGTTTATC+AGG 0.305528 8:-2776255 None:intergenic
GTTCTGCTACTGCCACTACT+TGG 0.322586 8:-2774107 None:intergenic
ACTTTGATTACAAGATGTTT+TGG 0.324809 8:-2775967 None:intergenic
TTAAGCACCCTATGGGGATT+AGG 0.331329 8:+2777700 MsG0880042026.01.T01:CDS
CCCAAATGATTTCTCGCTTT+AGG 0.331633 8:-2776349 None:intergenic
ACCTAAAGCGAGAAATCATT+TGG 0.332484 8:+2776348 MsG0880042026.01.T01:CDS
TTTCATAAGAGCTTGCTAAA+TGG 0.337674 8:+2777989 MsG0880042026.01.T01:three_prime_UTR
TCAACTGCTTAAAAGAAATT+GGG 0.339051 8:-2776717 None:intergenic
GTGCATCAACTTCATCTAAC+TGG 0.350365 8:-2777621 None:intergenic
ATCATTTGGGATTGGAAATA+CGG 0.352445 8:+2776362 MsG0880042026.01.T01:CDS
TATGTCATATTTCAGAATTT+GGG 0.364799 8:+2774318 MsG0880042026.01.T01:intron
CTTGCAGTTAGTTTCGATTT+CGG 0.379115 8:+2776759 MsG0880042026.01.T01:CDS
TGGTCAAGCGTGCTGAGTTA+TGG 0.382252 8:+2776547 MsG0880042026.01.T01:CDS
AGAGATTGAAAGAGAAGAAT+AGG 0.391831 8:-2774059 None:intergenic
AGTTAAGATCAAAGGGTTCA+TGG 0.411792 8:+2777928 MsG0880042026.01.T01:three_prime_UTR
TTGCCACTCATGGTAGATAT+TGG 0.411854 8:+2775764 MsG0880042026.01.T01:five_prime_UTR
GGTCAAGCGTGCTGAGTTAT+GGG 0.420860 8:+2776548 MsG0880042026.01.T01:CDS
GGGATTGGAAATACGGCAAA+AGG 0.432298 8:+2776369 MsG0880042026.01.T01:CDS
TTCTGCTACTGCCACTACTT+GGG 0.447482 8:-2774106 None:intergenic
TAGGAAGAAAGAGGTCGAAA+GGG 0.450194 8:-2774040 None:intergenic
CCTCAATCTCTCTTACAACT+TGG 0.463132 8:+2774191 MsG0880042026.01.T01:five_prime_UTR
AGCGAGAAATCATTTGGGAT+TGG 0.464188 8:+2776354 MsG0880042026.01.T01:CDS
TAGTAGACAATATTAGCTCT+TGG 0.464370 8:+2776209 MsG0880042026.01.T01:five_prime_UTR
ATTGAGAAGTTAAGATCAAA+GGG 0.466129 8:+2777921 MsG0880042026.01.T01:three_prime_UTR
TTCCAGTCTGGTACTTGTGC+AGG 0.467660 8:-2775719 None:intergenic
CCTAAAGCGAGAAATCATTT+GGG 0.468102 8:+2776349 MsG0880042026.01.T01:CDS
TCTACCATGAGTGGCAATGC+AGG 0.471708 8:-2775758 None:intergenic
TTTAGCATACATATTAATGA+TGG 0.475086 8:+2775857 MsG0880042026.01.T01:five_prime_UTR
AATTTGGGTCATGGCAGAAT+AGG 0.476967 8:+2774333 MsG0880042026.01.T01:five_prime_UTR
GCAGCGGCAGGTTTCTTATG+TGG 0.479775 8:+2776311 MsG0880042026.01.T01:CDS
TATTAATGATGGCATTGGCT+TGG 0.480517 8:+2775868 MsG0880042026.01.T01:five_prime_UTR
GCAAAGACCTGGTTCCAGTC+TGG 0.484688 8:-2775731 None:intergenic
CTCTCAGTCCTAATCCCCAT+AGG 0.490442 8:-2777708 None:intergenic
ATACATATTAATGATGGCAT+TGG 0.492130 8:+2775863 MsG0880042026.01.T01:five_prime_UTR
AAATAATGTCAGGCAGCGGC+AGG 0.493293 8:+2776299 MsG0880042026.01.T01:exon
TGAGTTATGGGTAAAAGATC+TGG 0.497316 8:+2776560 MsG0880042026.01.T01:CDS
ATAGGAAGAAAGAGGTCGAA+AGG 0.501478 8:-2774041 None:intergenic
TATTGAGAAGTTAAGATCAA+AGG 0.501622 8:+2777920 MsG0880042026.01.T01:three_prime_UTR
GATGGTTGTTAAGCACCCTA+TGG 0.502179 8:+2777692 MsG0880042026.01.T01:CDS
TTCTTCTTTGTCCCAAGTAG+TGG 0.503579 8:+2774095 MsG0880042026.01.T01:five_prime_UTR
AAGCTCACAACTTGTTGCAT+TGG 0.510644 8:+2774158 MsG0880042026.01.T01:five_prime_UTR
TCTGTTGTTAAAATAATGTC+AGG 0.512372 8:+2776289 MsG0880042026.01.T01:exon
AGTTGTGAGCTTCGTAATTG+TGG 0.514100 8:-2774147 None:intergenic
TTTACCTCAACATCAGGATG+TGG 0.519487 8:+2776012 MsG0880042026.01.T01:five_prime_UTR
ATGGTTGTTAAGCACCCTAT+GGG 0.525199 8:+2777693 MsG0880042026.01.T01:CDS
CCAAGTTGTAAGAGAGATTG+AGG 0.531922 8:-2774191 None:intergenic
AGAGAAGAATAGGAAGAAAG+AGG 0.532332 8:-2774049 None:intergenic
AGCTACGCTATAGCTGCTCT+TGG 0.533417 8:-2776054 None:intergenic
TCTCAGTCCTAATCCCCATA+GGG 0.549156 8:-2777707 None:intergenic
TTTGGCTCAATATATCAGAA+AGG 0.550668 8:-2775949 None:intergenic
ATGGGTAAAAGATCTGGCTC+TGG 0.555239 8:+2776566 MsG0880042026.01.T01:CDS
AGGACATACAGAGAAGAAGA+AGG 0.567221 8:-2774368 None:intergenic
CTCCTGCACAAGTACCAGAC+TGG 0.570890 8:+2775717 MsG0880042026.01.T01:five_prime_UTR
AGACCCTGCATTGCCACTCA+TGG 0.575995 8:+2775754 MsG0880042026.01.T01:five_prime_UTR
TTAACCACATCCTGATGTTG+AGG 0.577039 8:-2776016 None:intergenic
CTCATGGTAGATATTGGATG+TGG 0.587804 8:+2775770 MsG0880042026.01.T01:five_prime_UTR
GAAACTAACTGCAAGGGACC+AGG 0.589756 8:-2776751 None:intergenic
CGAAATCGAAACTAACTGCA+AGG 0.590115 8:-2776758 None:intergenic
GAGATTCATGCTGAATTCGA+AGG 0.592570 8:+2777732 MsG0880042026.01.T01:CDS
ATGCAGGGTCTGCAAAGACC+TGG 0.597840 8:-2775742 None:intergenic
CAACTGCTTAAAAGAAATTG+GGG 0.598384 8:-2776716 None:intergenic
ATATTTCAGAATTTGGGTCA+TGG 0.598590 8:+2774324 MsG0880042026.01.T01:intron
CAGTTGATAGAATCATATCC+TGG 0.600339 8:+2776733 MsG0880042026.01.T01:CDS
AAGGTTGTATGAGAAGAAGC+AGG 0.607540 8:+2777770 MsG0880042026.01.T01:three_prime_UTR
ACAAGTACCAGACTGGAACC+AGG 0.613511 8:+2775724 MsG0880042026.01.T01:five_prime_UTR
CTACCATGAGTGGCAATGCA+GGG 0.613691 8:-2775757 None:intergenic
AAGGAGTGAAAATCTATCGA+AGG 0.623652 8:+2777751 MsG0880042026.01.T01:exon
TATTGTGTGACAGTGAAGGA+TGG 0.628877 8:+2777674 MsG0880042026.01.T01:CDS
GTTAAAATAATGTCAGGCAG+CGG 0.634399 8:+2776295 MsG0880042026.01.T01:exon
ACAATCTGATGCACTTGAAG+TGG 0.636353 8:+2777582 MsG0880042026.01.T01:CDS
GATATATTGTGTGACAGTGA+AGG 0.638001 8:+2777670 MsG0880042026.01.T01:CDS
GATTTGAAATTTGAAGTGTG+AGG 0.646434 8:-2777827 None:intergenic
TATAGCTGCTCTTGGCAACA+CGG 0.649786 8:-2776046 None:intergenic
GAAATCGAAACTAACTGCAA+GGG 0.651078 8:-2776757 None:intergenic
CATCCAATATCTACCATGAG+TGG 0.659846 8:-2775767 None:intergenic
TGAGAGTGTTAACATTAGTG+CGG 0.687588 8:-2774011 None:intergenic
TGGTTGTTAAGCACCCTATG+GGG 0.713166 8:+2777694 MsG0880042026.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGTTATATAATATAATGA+AGG - Chr8:2775425-2775444 None:intergenic 10.0%
!! ATAAATGATATTATAGTATA+GGG - Chr8:2774473-2774492 None:intergenic 10.0%
!! TTGTATAAAATATATACATT+TGG + Chr8:2775445-2775464 MsG0880042026.01.T01:intron 10.0%
!!! TTTCTAAATGTTTTTTTTAT+TGG - Chr8:2778046-2778065 None:intergenic 10.0%
!! AATTATTTAGATTTAAAGAG+GGG + Chr8:2774934-2774953 MsG0880042026.01.T01:intron 15.0%
!! CAATTATTTAGATTTAAAGA+GGG + Chr8:2774933-2774952 MsG0880042026.01.T01:intron 15.0%
!! GATAAATGATATTATAGTAT+AGG - Chr8:2774474-2774493 None:intergenic 15.0%
!! TCATATATCATTCATAAAAT+TGG - Chr8:2775577-2775596 None:intergenic 15.0%
!! TTAACTCATAATCATATTTA+TGG + Chr8:2777465-2777484 MsG0880042026.01.T01:intron 15.0%
!!! ATTTTATCCTTATTCATTAT+AGG + Chr8:2774422-2774441 MsG0880042026.01.T01:intron 15.0%
!!! GATATTTTTTCTTTAAATGT+GGG - Chr8:2777137-2777156 None:intergenic 15.0%
!!! GATTTTATCATATTATTTGT+AGG - Chr8:2774696-2774715 None:intergenic 15.0%
!!! TGATATTTTTTCTTTAAATG+TGG - Chr8:2777138-2777157 None:intergenic 15.0%
!! AAATATGAGAAAACTTGAAT+TGG - Chr8:2774406-2774425 None:intergenic 20.0%
!! AAGGTGAATTTATAATATAC+AGG - Chr8:2775089-2775108 None:intergenic 20.0%
!! AGGTGAATTTATAATATACA+GGG - Chr8:2775088-2775107 None:intergenic 20.0%
!! AGTAAATTGCACAATATTTA+TGG - Chr8:2777268-2777287 None:intergenic 20.0%
!! ATCTAATCCTATAATGAATA+AGG - Chr8:2774432-2774451 None:intergenic 20.0%
!! ATTATATTATCCGTTTAAAG+TGG - Chr8:2774247-2774266 None:intergenic 20.0%
!! ATTATTTAGATTTAAAGAGG+GGG + Chr8:2774935-2774954 MsG0880042026.01.T01:intron 20.0%
!! CCAATTATTTAGATTTAAAG+AGG + Chr8:2774932-2774951 MsG0880042026.01.T01:intron 20.0%
!! CCTCTTTAAATCTAAATAAT+TGG - Chr8:2774935-2774954 None:intergenic 20.0%
!! GAAGAAAAAAATATCATTAC+AGG - Chr8:2775692-2775711 None:intergenic 20.0%
!! GACTAAAACAACAAATTATA+TGG + Chr8:2775380-2775399 MsG0880042026.01.T01:intron 20.0%
!! TACACTAATAGTAAGAAAAA+TGG - Chr8:2777378-2777397 None:intergenic 20.0%
!! TATGTCATATTTCAGAATTT+GGG + Chr8:2774318-2774337 MsG0880042026.01.T01:intron 20.0%
!! TTACTATTAGTGTAAATGTA+TGG + Chr8:2777384-2777403 MsG0880042026.01.T01:intron 20.0%
!! TTATGTCATATTTCAGAATT+TGG + Chr8:2774317-2774336 MsG0880042026.01.T01:intron 20.0%
!! TTCATTAGCAAATCAAAATA+GGG - Chr8:2774526-2774545 None:intergenic 20.0%
!! TTTAGCATACATATTAATGA+TGG + Chr8:2775857-2775876 MsG0880042026.01.T01:five_prime_UTR 20.0%
!! TTTCATTAGCAAATCAAAAT+AGG - Chr8:2774527-2774546 None:intergenic 20.0%
!!! CAATCATAACTTTATTTTGA+CGG + Chr8:2776603-2776622 MsG0880042026.01.T01:intron 20.0%
!!! TATTTTAACAACAGATATAG+TGG - Chr8:2776284-2776303 None:intergenic 20.0%
! AAAAAACAGGATTTCAAAAG+GGG + Chr8:2775196-2775215 MsG0880042026.01.T01:intron 25.0%
! AAGTGGAAATGAAAGTAAAA+AGG - Chr8:2774230-2774249 None:intergenic 25.0%
! ACATGATCTATTATTGAGTT+TGG + Chr8:2775919-2775938 MsG0880042026.01.T01:five_prime_UTR 25.0%
! ACTTTCATTTCCACTTTAAA+CGG + Chr8:2774234-2774253 MsG0880042026.01.T01:intron 25.0%
! AGAAATCAAAATTCACTGAA+AGG - Chr8:2776447-2776466 None:intergenic 25.0%
! ATACAAAATCTTATGTACCA+GGG - Chr8:2777352-2777371 None:intergenic 25.0%
! ATACATATTAATGATGGCAT+TGG + Chr8:2775863-2775882 MsG0880042026.01.T01:five_prime_UTR 25.0%
! ATCAACTGCTTAAAAGAAAT+TGG - Chr8:2776721-2776740 None:intergenic 25.0%
! ATTGAGAAGTTAAGATCAAA+GGG + Chr8:2777921-2777940 MsG0880042026.01.T01:three_prime_UTR 25.0%
! ATTGTAGATAATTTATCTCC+CGG + Chr8:2777195-2777214 MsG0880042026.01.T01:intron 25.0%
! CAAAAAACAGGATTTCAAAA+GGG + Chr8:2775195-2775214 MsG0880042026.01.T01:intron 25.0%
! GAAATCAAAATTCACTGAAA+GGG - Chr8:2776446-2776465 None:intergenic 25.0%
! GGTGAATTTATAATATACAG+GGG - Chr8:2775087-2775106 None:intergenic 25.0%
! TACAAGATATGCTGATATTT+AGG + Chr8:2777311-2777330 MsG0880042026.01.T01:intron 25.0%
! TATTGAGAAGTTAAGATCAA+AGG + Chr8:2777920-2777939 MsG0880042026.01.T01:three_prime_UTR 25.0%
! TCAACTGCTTAAAAGAAATT+GGG - Chr8:2776720-2776739 None:intergenic 25.0%
! TCTGTTGTTAAAATAATGTC+AGG + Chr8:2776289-2776308 MsG0880042026.01.T01:exon 25.0%
!! ACGAATGAACATCTTTAAAA+AGG - Chr8:2774557-2774576 None:intergenic 25.0%
!! ACTTTGATTACAAGATGTTT+TGG - Chr8:2775970-2775989 None:intergenic 25.0%
!! AGTTTGTTTGTCTTAATTGT+AGG + Chr8:2774497-2774516 MsG0880042026.01.T01:intron 25.0%
!! ATTATTTGTAGGTCTTTTGT+CGG - Chr8:2774685-2774704 None:intergenic 25.0%
!! CGAATGAACATCTTTAAAAA+GGG - Chr8:2774556-2774575 None:intergenic 25.0%
!! GAATGAACATCTTTAAAAAG+GGG - Chr8:2774555-2774574 None:intergenic 25.0%
!! TGTTTTGTACAGATTGAAAA+GGG - Chr8:2775295-2775314 None:intergenic 25.0%
!!! TTGTTTTGTACAGATTGAAA+AGG - Chr8:2775296-2775315 None:intergenic 25.0%
AAAAACAGGATTTCAAAAGG+GGG + Chr8:2775197-2775216 MsG0880042026.01.T01:intron 30.0%
AATCAAATGAAAACCGACAT+AGG + Chr8:2774826-2774845 MsG0880042026.01.T01:intron 30.0%
AATTAAGTGCGATGTTTATC+AGG - Chr8:2776258-2776277 None:intergenic 30.0%
ACAAGAAATGTCTGCAATTA+AGG - Chr8:2776687-2776706 None:intergenic 30.0%
AGAGATTGAAAGAGAAGAAT+AGG - Chr8:2774062-2774081 None:intergenic 30.0%
AGATGTTCATTCGTTGAAAT+TGG + Chr8:2774563-2774582 MsG0880042026.01.T01:intron 30.0%
AGGCATGAAATATCGTTAAA+AGG - Chr8:2777502-2777521 None:intergenic 30.0%
ATATTTCAGAATTTGGGTCA+TGG + Chr8:2774324-2774343 MsG0880042026.01.T01:intron 30.0%
CAACTGCTTAAAAGAAATTG+GGG - Chr8:2776719-2776738 None:intergenic 30.0%
CAAGAAATGTCTGCAATTAA+GGG - Chr8:2776686-2776705 None:intergenic 30.0%
CATACAAAATCTTATGTACC+AGG - Chr8:2777353-2777372 None:intergenic 30.0%
CCAAAAAACAGGATTTCAAA+AGG + Chr8:2775194-2775213 MsG0880042026.01.T01:intron 30.0%
CGTACATAATGAAAGACAAA+AGG - Chr8:2775653-2775672 None:intergenic 30.0%
GGCATGAAATATCGTTAAAA+GGG - Chr8:2777501-2777520 None:intergenic 30.0%
TCATAAACACGACCATAAAA+TGG - Chr8:2777551-2777570 None:intergenic 30.0%
TCTGATTAGATATCTCTGTA+AGG - Chr8:2775534-2775553 None:intergenic 30.0%
TCTGCAATTAAGGGAAAAAA+GGG - Chr8:2776677-2776696 None:intergenic 30.0%
TGAATTGGTGTAGTAAAGAA+AGG - Chr8:2774391-2774410 None:intergenic 30.0%
TGATCTATTAAGAACCAAGA+CGG + Chr8:2774801-2774820 MsG0880042026.01.T01:intron 30.0%
TTCTGCATGCTCTAATATAT+AGG + Chr8:2777232-2777251 MsG0880042026.01.T01:intron 30.0%
TTGTCTTTCATTATGTACGA+GGG + Chr8:2775654-2775673 MsG0880042026.01.T01:intron 30.0%
TTTGTCTTTCATTATGTACG+AGG + Chr8:2775653-2775672 MsG0880042026.01.T01:intron 30.0%
! ATATGGAGACATCTGTATTT+TGG - Chr8:2774726-2774745 None:intergenic 30.0%
! ATCATTTGGGATTGGAAATA+CGG + Chr8:2776362-2776381 MsG0880042026.01.T01:CDS 30.0%
! GATTTGAAATTTGAAGTGTG+AGG - Chr8:2777830-2777849 None:intergenic 30.0%
! GCTACATTGTTGTTACTTAA+AGG + Chr8:2777048-2777067 MsG0880042026.01.T01:intron 30.0%
! TAGTAGACAATATTAGCTCT+TGG + Chr8:2776209-2776228 MsG0880042026.01.T01:five_prime_UTR 30.0%
! TGTCAAGTTTTTATTGACGT+GGG - Chr8:2775138-2775157 None:intergenic 30.0%
! TTATTTGTAGGTCTTTTGTC+GGG - Chr8:2774684-2774703 None:intergenic 30.0%
! TTTAGAACCTCTTAAGAATG+CGG + Chr8:2775327-2775346 MsG0880042026.01.T01:intron 30.0%
! TTTGGCTCAATATATCAGAA+AGG - Chr8:2775952-2775971 None:intergenic 30.0%
! TTTTTCTTTAAATGTGGGTC+TGG - Chr8:2777132-2777151 None:intergenic 30.0%
!! AAAAGCACCAAAGAGAATTT+GGG + Chr8:2776793-2776812 MsG0880042026.01.T01:intron 30.0%
!! TAAAAGCACCAAAGAGAATT+TGG + Chr8:2776792-2776811 MsG0880042026.01.T01:intron 30.0%
!! TTTCATAAGAGCTTGCTAAA+TGG + Chr8:2777989-2778008 MsG0880042026.01.T01:three_prime_UTR 30.0%
!!! ACTTGACACATCACATTTTT+TGG + Chr8:2775150-2775169 MsG0880042026.01.T01:intron 30.0%
!!! CCTTTTGAAATCCTGTTTTT+TGG - Chr8:2775197-2775216 None:intergenic 30.0%
AAAAGATGCACAGAAGATTC+CGG + Chr8:2774958-2774977 MsG0880042026.01.T01:intron 35.0%
AAGGAGTGAAAATCTATCGA+AGG + Chr8:2777751-2777770 MsG0880042026.01.T01:exon 35.0%
AATGTAGCCAACAAGTGATT+TGG - Chr8:2777036-2777055 None:intergenic 35.0%
ACCTAAAGCGAGAAATCATT+TGG + Chr8:2776348-2776367 MsG0880042026.01.T01:CDS 35.0%
ACGGCAAAGTAAATGTATAC+AGG + Chr8:2776622-2776641 MsG0880042026.01.T01:intron 35.0%
AGAAATGAAACTGAGAGAGA+AGG + Chr8:2775015-2775034 MsG0880042026.01.T01:intron 35.0%
AGAGAAGAATAGGAAGAAAG+AGG - Chr8:2774052-2774071 None:intergenic 35.0%
AGGACTTAATAGTAAGACAC+TGG + Chr8:2775357-2775376 MsG0880042026.01.T01:intron 35.0%
AGTTAAGATCAAAGGGTTCA+TGG + Chr8:2777928-2777947 MsG0880042026.01.T01:three_prime_UTR 35.0%
ATCTATTAAGAACCAAGACG+GGG + Chr8:2774803-2774822 MsG0880042026.01.T01:intron 35.0%
CAAAATTCACTGAAAGGGAA+GGG - Chr8:2776441-2776460 None:intergenic 35.0%
CACTTTCAGCTTAGAATAGA+GGG + Chr8:2776480-2776499 MsG0880042026.01.T01:intron 35.0%
CCTAAAGCGAGAAATCATTT+GGG + Chr8:2776349-2776368 MsG0880042026.01.T01:CDS 35.0%
CGGCAAAGTAAATGTATACA+GGG + Chr8:2776623-2776642 MsG0880042026.01.T01:intron 35.0%
GAAATCGAAACTAACTGCAA+GGG - Chr8:2776760-2776779 None:intergenic 35.0%
GATATATTGTGTGACAGTGA+AGG + Chr8:2777670-2777689 MsG0880042026.01.T01:CDS 35.0%
GATCTATTAAGAACCAAGAC+GGG + Chr8:2774802-2774821 MsG0880042026.01.T01:intron 35.0%
GATGAACCAAATACAGAAAC+CGG + Chr8:2775600-2775619 MsG0880042026.01.T01:intron 35.0%
GGACTTAATAGTAAGACACT+GGG + Chr8:2775358-2775377 MsG0880042026.01.T01:intron 35.0%
GTCTGCAATTAAGGGAAAAA+AGG - Chr8:2776678-2776697 None:intergenic 35.0%
GTGATTTCATCGTATTAGTG+TGG - Chr8:2774870-2774889 None:intergenic 35.0%
GTTAAAATAATGTCAGGCAG+CGG + Chr8:2776295-2776314 MsG0880042026.01.T01:exon 35.0%
TCAAAATTCACTGAAAGGGA+AGG - Chr8:2776442-2776461 None:intergenic 35.0%
TCAGCATATCTTGTACTAAG+TGG - Chr8:2777306-2777325 None:intergenic 35.0%
TGAGTTATGGGTAAAAGATC+TGG + Chr8:2776560-2776579 MsG0880042026.01.T01:CDS 35.0%
TGTCTTTCATTATGTACGAG+GGG + Chr8:2775655-2775674 MsG0880042026.01.T01:intron 35.0%
TTCAAAACCGCATTCTTAAG+AGG - Chr8:2775337-2775356 None:intergenic 35.0%
TTCATTTCTTCGTCATCAAC+CGG - Chr8:2775004-2775023 None:intergenic 35.0%
TTTATGGTCGTGTTTATGAC+AGG + Chr8:2777552-2777571 MsG0880042026.01.T01:intron 35.0%
! AACTCTTTTACCTCAACATC+AGG + Chr8:2776006-2776025 MsG0880042026.01.T01:five_prime_UTR 35.0%
! AAGAGTTTTGCAAAAGCCTT+TGG + Chr8:2777164-2777183 MsG0880042026.01.T01:intron 35.0%
! CTTGCAGTTAGTTTCGATTT+CGG + Chr8:2776759-2776778 MsG0880042026.01.T01:CDS 35.0%
! GTACAGATTGAAAAGGGTAT+AGG - Chr8:2775289-2775308 None:intergenic 35.0%
! GTGTCAAGTTTTTATTGACG+TGG - Chr8:2775139-2775158 None:intergenic 35.0%
!! CAGTTGATAGAATCATATCC+TGG + Chr8:2776733-2776752 MsG0880042026.01.T01:CDS 35.0%
!! GAGAGTCGTTTTCCATTTTA+TGG + Chr8:2777536-2777555 MsG0880042026.01.T01:intron 35.0%
!! GTAATTGTGGCTTTTGTTGT+TGG - Chr8:2774137-2774156 None:intergenic 35.0%
!! TATGGATTTCTAGCCTATGT+CGG - Chr8:2774842-2774861 None:intergenic 35.0%
!! TATTAATGATGGCATTGGCT+TGG + Chr8:2775868-2775887 MsG0880042026.01.T01:five_prime_UTR 35.0%
!! TGAGAGTGTTAACATTAGTG+CGG - Chr8:2774014-2774033 None:intergenic 35.0%
!!! CTTAAGAATGCGGTTTTGAA+AGG + Chr8:2775337-2775356 MsG0880042026.01.T01:intron 35.0%
AAGGTTGTATGAGAAGAAGC+AGG + Chr8:2777770-2777789 MsG0880042026.01.T01:three_prime_UTR 40.0%
AATTTGGGTCATGGCAGAAT+AGG + Chr8:2774333-2774352 MsG0880042026.01.T01:five_prime_UTR 40.0%
ACAATCTGATGCACTTGAAG+TGG + Chr8:2777582-2777601 MsG0880042026.01.T01:CDS 40.0%
ACTCACCAATAGCAATGACT+AGG - Chr8:2774764-2774783 None:intergenic 40.0%
ACTGTGTGGAATTATGAGTG+CGG + Chr8:2777005-2777024 MsG0880042026.01.T01:intron 40.0%
ACTTCAATTCCATGTGCAGA+TGG + Chr8:2776527-2776546 MsG0880042026.01.T01:intron 40.0%
AGAAAATATACCTGTCCTCC+GGG - Chr8:2777216-2777235 None:intergenic 40.0%
AGGACATACAGAGAAGAAGA+AGG - Chr8:2774371-2774390 None:intergenic 40.0%
AGTTGTGAGCTTCGTAATTG+TGG - Chr8:2774150-2774169 None:intergenic 40.0%
ATACAGAAACCGGACCTAAT+AGG + Chr8:2775610-2775629 MsG0880042026.01.T01:intron 40.0%
ATAGGAAGAAAGAGGTCGAA+AGG - Chr8:2774044-2774063 None:intergenic 40.0%
ATGGTTGTTAAGCACCCTAT+GGG + Chr8:2777693-2777712 MsG0880042026.01.T01:CDS 40.0%
ATTCAGCACATCGTAACCAT+TGG + Chr8:2776884-2776903 MsG0880042026.01.T01:intron 40.0%
CAATAATCTGAGTGAGTGAG+TGG - Chr8:2775053-2775072 None:intergenic 40.0%
CACTCACTCACTCAGATTAT+TGG + Chr8:2775051-2775070 MsG0880042026.01.T01:intron 40.0%
CAGAAAATATACCTGTCCTC+CGG - Chr8:2777217-2777236 None:intergenic 40.0%
CATCCAATATCTACCATGAG+TGG - Chr8:2775770-2775789 None:intergenic 40.0%
CCAAGTTGTAAGAGAGATTG+AGG - Chr8:2774194-2774213 None:intergenic 40.0%
CCCAAATGATTTCTCGCTTT+AGG - Chr8:2776352-2776371 None:intergenic 40.0%
CCTCAATCTCTCTTACAACT+TGG + Chr8:2774191-2774210 MsG0880042026.01.T01:five_prime_UTR 40.0%
CGAAATCGAAACTAACTGCA+AGG - Chr8:2776761-2776780 None:intergenic 40.0%
CGTAACCATTGGATTGAGAT+CGG + Chr8:2776895-2776914 MsG0880042026.01.T01:intron 40.0%
CTCATGGTAGATATTGGATG+TGG + Chr8:2775770-2775789 MsG0880042026.01.T01:five_prime_UTR 40.0%
CTCTGTAAGGTGACAAAAGA+TGG - Chr8:2775521-2775540 None:intergenic 40.0%
CTTGCTAAATGGTTAGTGGA+GGG + Chr8:2778000-2778019 MsG0880042026.01.T01:intron 40.0%
GAGATTCATGCTGAATTCGA+AGG + Chr8:2777732-2777751 MsG0880042026.01.T01:CDS 40.0%
GCACTTTCAGCTTAGAATAG+AGG + Chr8:2776479-2776498 MsG0880042026.01.T01:intron 40.0%
GGGAAATCCAAATCACTTGT+TGG + Chr8:2777026-2777045 MsG0880042026.01.T01:intron 40.0%
GTAGATAATTTATCTCCCGG+AGG + Chr8:2777198-2777217 MsG0880042026.01.T01:intron 40.0%
GTGCATCAACTTCATCTAAC+TGG - Chr8:2777624-2777643 None:intergenic 40.0%
TAGAAAAAACGACCCCTTTC+CGG + Chr8:2774982-2775001 MsG0880042026.01.T01:intron 40.0%
TAGGAAGAAAGAGGTCGAAA+GGG - Chr8:2774043-2774062 None:intergenic 40.0%
TATTGTGTGACAGTGAAGGA+TGG + Chr8:2777674-2777693 MsG0880042026.01.T01:CDS 40.0%
TGAAAGACAAAAGGATTCGC+TGG - Chr8:2775644-2775663 None:intergenic 40.0%
TGGAAATACGGCAAAAGGTA+AGG + Chr8:2776374-2776393 MsG0880042026.01.T01:intron 40.0%
TTAACCACATCCTGATGTTG+AGG - Chr8:2776019-2776038 None:intergenic 40.0%
TTAGGTCCGGTTTCTGTATT+TGG - Chr8:2775609-2775628 None:intergenic 40.0%
TTCTTCTTTGTCCCAAGTAG+TGG + Chr8:2774095-2774114 MsG0880042026.01.T01:five_prime_UTR 40.0%
TTGCCACTCATGGTAGATAT+TGG + Chr8:2775764-2775783 MsG0880042026.01.T01:five_prime_UTR 40.0%
TTGCTAAATGGTTAGTGGAG+GGG + Chr8:2778001-2778020 MsG0880042026.01.T01:intron 40.0%
TTTACCTCAACATCAGGATG+TGG + Chr8:2776012-2776031 MsG0880042026.01.T01:five_prime_UTR 40.0%
TTTCATTTGATTCCCCGTCT+TGG - Chr8:2774818-2774837 None:intergenic 40.0%
! AGCGAGAAATCATTTGGGAT+TGG + Chr8:2776354-2776373 MsG0880042026.01.T01:CDS 40.0%
! GTTTTGCAAAAGCCTTTGGT+CGG + Chr8:2777168-2777187 MsG0880042026.01.T01:intron 40.0%
!! AAGCTCACAACTTGTTGCAT+TGG + Chr8:2774158-2774177 MsG0880042026.01.T01:five_prime_UTR 40.0%
!! AGAGCTTGCTAAATGGTTAG+TGG + Chr8:2777996-2778015 MsG0880042026.01.T01:intron 40.0%
!! CGTATTAGTGTGGTGTTGTA+TGG - Chr8:2774860-2774879 None:intergenic 40.0%
!! GTCGGGTTATGCTTTTAACT+TGG - Chr8:2774667-2774686 None:intergenic 40.0%
!! TCTACAATAGTACCGACCAA+AGG - Chr8:2777183-2777202 None:intergenic 40.0%
!!! AAGGGGTCGTTTTTTCTATC+CGG - Chr8:2774980-2774999 None:intergenic 40.0%
AACCGGACCTAATAGGCATT+TGG + Chr8:2775617-2775636 MsG0880042026.01.T01:intron 45.0%
ACTCTCTTAAGTCTTCTCGC+AGG - Chr8:2777522-2777541 None:intergenic 45.0%
AGGGAAGGGAGTTATCATCA+AGG - Chr8:2776427-2776446 None:intergenic 45.0%
AGTCCAGCCAATAAGCCATT+AGG - Chr8:2776828-2776847 None:intergenic 45.0%
AGTGGCACCCAAATTCTCTT+TGG - Chr8:2776803-2776822 None:intergenic 45.0%
ATCGTCCGATCTCAATCCAA+TGG - Chr8:2776903-2776922 None:intergenic 45.0%
ATGCGTGGAATTGTGACTTC+AGG - Chr8:2776858-2776877 None:intergenic 45.0%
CCAATAAGCCATTAGGTCAG+TGG - Chr8:2776821-2776840 None:intergenic 45.0%
CCACTGACCTAATGGCTTAT+TGG + Chr8:2776818-2776837 MsG0880042026.01.T01:intron 45.0%
CTGTGTGGAATTATGAGTGC+GGG + Chr8:2777006-2777025 MsG0880042026.01.T01:intron 45.0%
GACCAAATGCCTATTAGGTC+CGG - Chr8:2775622-2775641 None:intergenic 45.0%
GACGACCTAGTCATTGCTAT+TGG + Chr8:2774756-2774775 MsG0880042026.01.T01:intron 45.0%
GATGGTTGTTAAGCACCCTA+TGG + Chr8:2777692-2777711 MsG0880042026.01.T01:CDS 45.0%
GGGAAGGGAGTTATCATCAA+GGG - Chr8:2776426-2776445 None:intergenic 45.0%
GGGATTGGAAATACGGCAAA+AGG + Chr8:2776369-2776388 MsG0880042026.01.T01:CDS 45.0%
GTCAACACATCAGTGGTTGT+TGG - Chr8:2776987-2777006 None:intergenic 45.0%
TAATCTGAGTGAGTGAGTGG+AGG - Chr8:2775050-2775069 None:intergenic 45.0%
TAATTTATCTCCCGGAGGAC+AGG + Chr8:2777203-2777222 MsG0880042026.01.T01:intron 45.0%
TATAGCTGCTCTTGGCAACA+CGG - Chr8:2776049-2776068 None:intergenic 45.0%
TCTCAGTCCTAATCCCCATA+GGG - Chr8:2777710-2777729 None:intergenic 45.0%
TCTTCGTCATCAACCGGAAA+GGG - Chr8:2774998-2775017 None:intergenic 45.0%
TGACCTAATGGCTTATTGGC+TGG + Chr8:2776822-2776841 MsG0880042026.01.T01:intron 45.0%
TGAGCGATGGACCAAAAAAC+AGG + Chr8:2775183-2775202 MsG0880042026.01.T01:intron 45.0%
TGGTTGTTAAGCACCCTATG+GGG + Chr8:2777694-2777713 MsG0880042026.01.T01:CDS 45.0%
TTAAGCACCCTATGGGGATT+AGG + Chr8:2777700-2777719 MsG0880042026.01.T01:CDS 45.0%
TTCTGCTACTGCCACTACTT+GGG - Chr8:2774109-2774128 None:intergenic 45.0%
TTCTTCGTCATCAACCGGAA+AGG - Chr8:2774999-2775018 None:intergenic 45.0%
TTGTTCGCGTGGAATCATCA+AGG - Chr8:2775108-2775127 None:intergenic 45.0%
! AATGGCTTATTGGCTGGACT+TGG + Chr8:2776828-2776847 MsG0880042026.01.T01:intron 45.0%
! ATGGGTAAAAGATCTGGCTC+TGG + Chr8:2776566-2776585 MsG0880042026.01.T01:CDS 45.0%
! GCTTGCTAAATGGTTAGTGG+AGG + Chr8:2777999-2778018 MsG0880042026.01.T01:intron 45.0%
! GGACTCTATATTTCTGTCCC+TGG + Chr8:2777332-2777351 MsG0880042026.01.T01:intron 45.0%
AAATAATGTCAGGCAGCGGC+AGG + Chr8:2776299-2776318 MsG0880042026.01.T01:exon 50.0%
ACAAGTACCAGACTGGAACC+AGG + Chr8:2775724-2775743 MsG0880042026.01.T01:five_prime_UTR 50.0%
AGCTACGCTATAGCTGCTCT+TGG - Chr8:2776057-2776076 None:intergenic 50.0%
CCACACAGTCAACACATCAG+TGG - Chr8:2776994-2777013 None:intergenic 50.0%
CGCTGGACCAAATGCCTATT+AGG - Chr8:2775627-2775646 None:intergenic 50.0%
CTACCATGAGTGGCAATGCA+GGG - Chr8:2775760-2775779 None:intergenic 50.0%
CTCTCAGTCCTAATCCCCAT+AGG - Chr8:2777711-2777730 None:intergenic 50.0%
CTGGACACTGCATGTGTTGA+GGG - Chr8:2777113-2777132 None:intergenic 50.0%
CTTCGTCATCAACCGGAAAG+GGG - Chr8:2774997-2775016 None:intergenic 50.0%
GAAACTAACTGCAAGGGACC+AGG - Chr8:2776754-2776773 None:intergenic 50.0%
GGTCAAGCGTGCTGAGTTAT+GGG + Chr8:2776548-2776567 MsG0880042026.01.T01:CDS 50.0%
GGTCGTCAACGTTGCAGATA+TGG - Chr8:2774743-2774762 None:intergenic 50.0%
GTGCTGAATACGTGAATGCG+TGG - Chr8:2776873-2776892 None:intergenic 50.0%
GTTCTGCTACTGCCACTACT+TGG - Chr8:2774110-2774129 None:intergenic 50.0%
TCTACCATGAGTGGCAATGC+AGG - Chr8:2775761-2775780 None:intergenic 50.0%
TCTGGACACTGCATGTGTTG+AGG - Chr8:2777114-2777133 None:intergenic 50.0%
TGGTCAAGCGTGCTGAGTTA+TGG + Chr8:2776547-2776566 MsG0880042026.01.T01:CDS 50.0%
TGGTCCAGAAATCTGAGCGA+TGG + Chr8:2775170-2775189 MsG0880042026.01.T01:intron 50.0%
TGGTCCATCGCTCAGATTTC+TGG - Chr8:2775177-2775196 None:intergenic 50.0%
TTCCAGTCTGGTACTTGTGC+AGG - Chr8:2775722-2775741 None:intergenic 50.0%
! TGGGATCAAACTTGTTCGCG+TGG - Chr8:2775119-2775138 None:intergenic 50.0%
!! CCACTGATGTGTTGACTGTG+TGG + Chr8:2776991-2777010 MsG0880042026.01.T01:intron 50.0%
!! TTTGGGTGCCACTGACCTAA+TGG + Chr8:2776810-2776829 MsG0880042026.01.T01:intron 50.0%
AGACCCTGCATTGCCACTCA+TGG + Chr8:2775754-2775773 MsG0880042026.01.T01:five_prime_UTR 55.0%
ATGCAGGGTCTGCAAAGACC+TGG - Chr8:2775745-2775764 None:intergenic 55.0%
CACGCTTGACCATCTGCACA+TGG - Chr8:2776539-2776558 None:intergenic 55.0%
CTCCTGCACAAGTACCAGAC+TGG + Chr8:2775717-2775736 MsG0880042026.01.T01:five_prime_UTR 55.0%
GCAAAGACCTGGTTCCAGTC+TGG - Chr8:2775734-2775753 None:intergenic 55.0%
GCAGCGGCAGGTTTCTTATG+TGG + Chr8:2776311-2776330 MsG0880042026.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 2773989 2778117 2773989 ID=MsG0880042026.01;Name=MsG0880042026.01
Chr8 mRNA 2773989 2778117 2773989 ID=MsG0880042026.01.T01;Parent=MsG0880042026.01;Name=MsG0880042026.01.T01;_AED=0.41;_eAED=0.41;_QI=861|0.83|1|1|0.5|0.28|7|331|135
Chr8 exon 2773989 2774212 2773989 ID=MsG0880042026.01.T01:exon:1913;Parent=MsG0880042026.01.T01
Chr8 exon 2774333 2774381 2774333 ID=MsG0880042026.01.T01:exon:1914;Parent=MsG0880042026.01.T01
Chr8 exon 2775716 2776390 2775716 ID=MsG0880042026.01.T01:exon:1915;Parent=MsG0880042026.01.T01
Chr8 exon 2776546 2776595 2776546 ID=MsG0880042026.01.T01:exon:1916;Parent=MsG0880042026.01.T01
Chr8 exon 2776696 2776780 2776696 ID=MsG0880042026.01.T01:exon:1917;Parent=MsG0880042026.01.T01
Chr8 exon 2777574 2778010 2777574 ID=MsG0880042026.01.T01:exon:1918;Parent=MsG0880042026.01.T01
Chr8 exon 2778038 2778117 2778038 ID=MsG0880042026.01.T01:exon:1919;Parent=MsG0880042026.01.T01
Chr8 five_prime_UTR 2773989 2774212 2773989 ID=MsG0880042026.01.T01:five_prime_utr;Parent=MsG0880042026.01.T01
Chr8 five_prime_UTR 2774333 2774381 2774333 ID=MsG0880042026.01.T01:five_prime_utr;Parent=MsG0880042026.01.T01
Chr8 five_prime_UTR 2775716 2776303 2775716 ID=MsG0880042026.01.T01:five_prime_utr;Parent=MsG0880042026.01.T01
Chr8 CDS 2776304 2776390 2776304 ID=MsG0880042026.01.T01:cds;Parent=MsG0880042026.01.T01
Chr8 CDS 2776546 2776595 2776546 ID=MsG0880042026.01.T01:cds;Parent=MsG0880042026.01.T01
Chr8 CDS 2776696 2776780 2776696 ID=MsG0880042026.01.T01:cds;Parent=MsG0880042026.01.T01
Chr8 CDS 2777574 2777759 2777574 ID=MsG0880042026.01.T01:cds;Parent=MsG0880042026.01.T01
Chr8 three_prime_UTR 2777760 2778010 2777760 ID=MsG0880042026.01.T01:three_prime_utr;Parent=MsG0880042026.01.T01
Chr8 three_prime_UTR 2778038 2778117 2778038 ID=MsG0880042026.01.T01:three_prime_utr;Parent=MsG0880042026.01.T01
Gene Sequence

>MsG0880042026.01.T01

ATGTCAGGCAGCGGCAGGTTTCTTATGTGGCTTGCAAAAAGAACACCTAAAGCGAGAAATCATTTGGGATTGGAAATACGGCAAAAGATGGTCAAGCGTGCTGAGTTATGGGTAAAAGATCTGGCTCTGGATAACATACATTTCTTGTTTGCAAATGCCCCAATTTCTTTTAAGCAGTTGATAGAATCATATCCTGGTCCCTTGCAGTTAGTTTCGATTTCGGTGTTTGTACAATCTGATGCACTTGAAGTGGCACTTGACATGAAAAACCAGTTAGATGAAGTTGATGCACTTAGTCACATAGATGCTTTGAACTCTGATATATTGTGTGACAGTGAAGGATGGTTGTTAAGCACCCTATGGGGATTAGGACTGAGAGAGAGATTCATGCTGAATTCGAAGGAGTGA

Protein sequence

>MsG0880042026.01.T01

MSGSGRFLMWLAKRTPKARNHLGLEIRQKMVKRAELWVKDLALDNIHFLFANAPISFKQLIESYPGPLQLVSISVFVQSDALEVALDMKNQLDEVDALSHIDALNSDILCDSEGWLLSTLWGLGLRERFMLNSKE*