AlfalfaGEDB | MsG0880042026.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042026.01

KEGG: K03439
GO: -
PFAM: PF02390

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042026.01.T01	XP_013443967.1	72.727	154	9	1	3	123	102	255	1.57E-66	213

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042026.01.T01	Q2JRH1	50.685	73	33	2	2	74	72	141	2.33E-13	67.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042026.01.T01	A0A072TKF1	72.727	154	9	1	3	123	102	255	7.51e-67	213

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048727.01	MsG0880042026.01	0.847516	1.101037e-59	1.962022e-56
MsG0080048748.01	MsG0880042026.01	0.802502	5.442103e-49	2.670141e-46
MsG0080048773.01	MsG0880042026.01	0.845656	3.544966e-59	5.949944e-56
MsG0080048820.01	MsG0880042026.01	0.830789	2.410175e-55	2.565670e-52
MsG0080048849.01	MsG0880042026.01	0.831352	1.752446e-55	1.896855e-52
MsG0080048878.01	MsG0880042026.01	0.821707	3.499371e-53	2.868605e-50
MsG0080049002.01	MsG0880042026.01	0.845444	4.045081e-59	6.742206e-56
MsG0080049040.01	MsG0880042026.01	0.807632	4.598106e-50	2.573989e-47
MsG0080049068.01	MsG0880042026.01	0.840418	8.800973e-58	1.252883e-54
MsG0080049069.01	MsG0880042026.01	0.812830	3.479274e-51	2.234957e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042026.01.T01	MTR_8g009700	72.727	154	9	1	3	123	102	255	1.91e-70	213
MsG0880042026.01.T01	MTR_8g009680	70.779	154	12	1	3	123	139	292	1.81e-69	211
MsG0880042026.01.T01	MTR_6g018680	34.677	124	47	2	2	92	497	619	3.33e-12	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042026.01.T01	AT5G17660	43.590	156	49	3	2	123	133	283	6.61e-37	128

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Find 79 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAATGTCAGGCAGCGGC+AGG	0.493293	8:+2776299	MsG0880042026.01.T01:exon
AAGCTCACAACTTGTTGCAT+TGG	0.510644	8:+2774158	MsG0880042026.01.T01:five_prime_UTR
AAGGAGTGAAAATCTATCGA+AGG	0.623652	8:+2777751	MsG0880042026.01.T01:exon
AAGGTTGTATGAGAAGAAGC+AGG	0.607540	8:+2777770	MsG0880042026.01.T01:three_prime_UTR
AATTAAGTGCGATGTTTATC+AGG	0.305528	8:-2776255	None:intergenic
AATTTGGGTCATGGCAGAAT+AGG	0.476967	8:+2774333	MsG0880042026.01.T01:five_prime_UTR
ACAAGTACCAGACTGGAACC+AGG	0.613511	8:+2775724	MsG0880042026.01.T01:five_prime_UTR
ACAATCTGATGCACTTGAAG+TGG	0.636353	8:+2777582	MsG0880042026.01.T01:CDS
ACATGATCTATTATTGAGTT+TGG	0.268662	8:+2775919	MsG0880042026.01.T01:five_prime_UTR
ACCTAAAGCGAGAAATCATT+TGG	0.332484	8:+2776348	MsG0880042026.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAGGATTTCAAAAGG+GGG	+	Chr8:2775197-2775216	MsG0880042026.01.T01:intron	30.0%
AATCAAATGAAAACCGACAT+AGG	+	Chr8:2774826-2774845	MsG0880042026.01.T01:intron	30.0%
AATTAAGTGCGATGTTTATC+AGG	-	Chr8:2776258-2776277	None:intergenic	30.0%
ACAAGAAATGTCTGCAATTA+AGG	-	Chr8:2776687-2776706	None:intergenic	30.0%
AGAGATTGAAAGAGAAGAAT+AGG	-	Chr8:2774062-2774081	None:intergenic	30.0%
AGATGTTCATTCGTTGAAAT+TGG	+	Chr8:2774563-2774582	MsG0880042026.01.T01:intron	30.0%
AGGCATGAAATATCGTTAAA+AGG	-	Chr8:2777502-2777521	None:intergenic	30.0%
ATATTTCAGAATTTGGGTCA+TGG	+	Chr8:2774324-2774343	MsG0880042026.01.T01:intron	30.0%
CAACTGCTTAAAAGAAATTG+GGG	-	Chr8:2776719-2776738	None:intergenic	30.0%
CAAGAAATGTCTGCAATTAA+GGG	-	Chr8:2776686-2776705	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	2773989	2778117	2773989	ID=MsG0880042026.01;Name=MsG0880042026.01
Chr8	mRNA	2773989	2778117	2773989	ID=MsG0880042026.01.T01;Parent=MsG0880042026.01;Name=MsG0880042026.01.T01;_AED=0.41;_eAED=0.41;_QI=861\|0.83\|1\|1\|0.5\|0.28\|7\|331\|135
Chr8	exon	2773989	2774212	2773989	ID=MsG0880042026.01.T01:exon:1913;Parent=MsG0880042026.01.T01
Chr8	exon	2774333	2774381	2774333	ID=MsG0880042026.01.T01:exon:1914;Parent=MsG0880042026.01.T01
Chr8	exon	2775716	2776390	2775716	ID=MsG0880042026.01.T01:exon:1915;Parent=MsG0880042026.01.T01
Chr8	exon	2776546	2776595	2776546	ID=MsG0880042026.01.T01:exon:1916;Parent=MsG0880042026.01.T01
Chr8	exon	2776696	2776780	2776696	ID=MsG0880042026.01.T01:exon:1917;Parent=MsG0880042026.01.T01
Chr8	exon	2777574	2778010	2777574	ID=MsG0880042026.01.T01:exon:1918;Parent=MsG0880042026.01.T01
Chr8	exon	2778038	2778117	2778038	ID=MsG0880042026.01.T01:exon:1919;Parent=MsG0880042026.01.T01
Chr8	five_prime_UTR	2773989	2774212	2773989	ID=MsG0880042026.01.T01:five_prime_utr;Parent=MsG0880042026.01.T01
Chr8	five_prime_UTR	2774333	2774381	2774333	ID=MsG0880042026.01.T01:five_prime_utr;Parent=MsG0880042026.01.T01
Chr8	five_prime_UTR	2775716	2776303	2775716	ID=MsG0880042026.01.T01:five_prime_utr;Parent=MsG0880042026.01.T01
Chr8	CDS	2776304	2776390	2776304	ID=MsG0880042026.01.T01:cds;Parent=MsG0880042026.01.T01
Chr8	CDS	2776546	2776595	2776546	ID=MsG0880042026.01.T01:cds;Parent=MsG0880042026.01.T01
Chr8	CDS	2776696	2776780	2776696	ID=MsG0880042026.01.T01:cds;Parent=MsG0880042026.01.T01
Chr8	CDS	2777574	2777759	2777574	ID=MsG0880042026.01.T01:cds;Parent=MsG0880042026.01.T01
Chr8	three_prime_UTR	2777760	2778010	2777760	ID=MsG0880042026.01.T01:three_prime_utr;Parent=MsG0880042026.01.T01
Chr8	three_prime_UTR	2778038	2778117	2778038	ID=MsG0880042026.01.T01:three_prime_utr;Parent=MsG0880042026.01.T01

Gene Sequence

>MsG0880042026.01.T01

ATGTCAGGCAGCGGCAGGTTTCTTATGTGGCTTGCAAAAAGAACACCTAAAGCGAGAAATCATTTGGGATTGGAAATACGGCAAAAGATGGTCAAGCGTGCTGAGTTATGGGTAAAAGATCTGGCTCTGGATAACATACATTTCTTGTTTGCAAATGCCCCAATTTCTTTTAAGCAGTTGATAGAATCATATCCTGGTCCCTTGCAGTTAGTTTCGATTTCGGTGTTTGTACAATCTGATGCACTTGAAGTGGCACTTGACATGAAAAACCAGTTAGATGAAGTTGATGCACTTAGTCACATAGATGCTTTGAACTCTGATATATTGTGTGACAGTGAAGGATGGTTGTTAAGCACCCTATGGGGATTAGGACTGAGAGAGAGATTCATGCTGAATTCGAAGGAGTGA

Protein sequence

>MsG0880042026.01.T01

MSGSGRFLMWLAKRTPKARNHLGLEIRQKMVKRAELWVKDLALDNIHFLFANAPISFKQLIESYPGPLQLVSISVFVQSDALEVALDMKNQLDEVDALSHIDALNSDILCDSEGWLLSTLWGLGLRERFMLNSKE*