AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045722.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045722.01.T01 MTR_8g077570 97.549 204 5 0 1 204 1 204 1.98e-144 400
MsG0880045722.01.T01 MTR_8g077570 96.154 156 6 0 1 156 1 156 1.66e-107 306
MsG0880045722.01.T01 MTR_8g077570 97.403 154 4 0 1 154 1 154 1.31e-106 303
MsG0880045722.01.T01 MTR_8g077570 96.689 151 5 0 1 151 1 151 6.01e-103 294
MsG0880045722.01.T01 MTR_8g077570 97.163 141 4 0 1 141 1 141 3.05e-96 276
MsG0880045722.01.T01 MTR_1g022295 62.745 204 75 1 1 204 1 203 2.64e-87 256
MsG0880045722.01.T01 MTR_1g022295 61.864 118 45 0 87 204 35 152 1.76e-46 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045722.01.T01 AT5G66550 68.020 197 63 0 8 204 10 206 2.74e-95 276
MsG0880045722.01.T01 AT5G66550 68.020 197 63 0 8 204 41 237 9.32e-95 276
MsG0880045722.01.T01 AT5G42770 59.314 204 82 1 1 204 1 203 6.29e-83 245
MsG0880045722.01.T01 AT5G42770 53.913 230 80 1 1 204 1 230 3.98e-81 241
MsG0880045722.01.T01 AT5G42770 60.294 204 80 1 1 204 1 203 1.97e-78 233
MsG0880045722.01.T01 AT5G66550 68.243 148 47 0 8 155 41 188 2.11e-69 210
MsG0880045722.01.T01 AT5G66550 68.243 148 47 0 8 155 41 188 2.11e-69 210
MsG0880045722.01.T01 AT2G25500 71.910 89 25 0 8 96 10 98 2.38e-39 130

Find 54 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTTACAAGATAATTT+TGG 0.096426 8:-63340080 MsG0880045722.01.T01:CDS
CAAACAAATTCTTGCTGAAA+TGG 0.251372 8:-63340038 MsG0880045722.01.T01:CDS
GAGGGAAAAGCCTGAAGATT+TGG 0.328511 8:-63339884 MsG0880045722.01.T01:CDS
GGAGTTACGTTCAATGTTGC+TGG 0.332573 8:-63336867 MsG0880045722.01.T01:CDS
CGTGCTTCTTTCTCACTAGT+TGG 0.356954 8:+63337472 None:intergenic
AATGTTACAACCAAATCTTC+AGG 0.358970 8:+63339874 None:intergenic
GGGATACGAATTCACAATAA+TGG 0.374060 8:-63340017 MsG0880045722.01.T01:intron
TGGTATATCGAGGAATAATC+AGG 0.384140 8:-63337501 MsG0880045722.01.T01:CDS
GAGTTTCTCTGTAAGAGCTT+TGG 0.389303 8:+63336371 None:intergenic
AGACGAGGTCATTGATAATC+TGG 0.411625 8:-63337069 MsG0880045722.01.T01:intron
CCCAAAATTATCTTGTAAGA+AGG 0.413462 8:+63340079 None:intergenic
AAACAAATTCTTGCTGAAAT+GGG 0.416375 8:-63340037 MsG0880045722.01.T01:CDS
CTTGTGACCGGAAAACGTTA+TGG 0.420227 8:-63337297 MsG0880045722.01.T01:CDS
GCAGTGATTAACAATGTTGT+AGG 0.432301 8:+63338635 None:intergenic
GCTCCTTACTGATGGTCAAT+TGG 0.435359 8:-63338669 MsG0880045722.01.T01:CDS
TTGTGACCGGAAAACGTTAT+GGG 0.437051 8:-63337296 MsG0880045722.01.T01:CDS
CAAAATTCAGCAAGGTATCA+AGG 0.457692 8:+63336207 None:intergenic
AACACGCCGACTACCATAGA+TGG 0.458600 8:-63340113 MsG0880045722.01.T01:exon
GAGTTACGTTCAATGTTGCT+GGG 0.471563 8:-63336866 MsG0880045722.01.T01:CDS
TGACCTCGTCTGGTATTTCA+AGG 0.473389 8:+63337081 None:intergenic
TCCACAAAAGGCAACGTCAA+TGG 0.474325 8:+63336825 None:intergenic
AGATTATCAATGACCTCGTC+TGG 0.476779 8:+63337071 None:intergenic
GGTAGTCATGCAGCTGTGGT+AGG 0.502106 8:-63337339 MsG0880045722.01.T01:CDS
TCTTACAGAGAAACTCATAA+TGG 0.504312 8:-63336364 MsG0880045722.01.T01:CDS
ATATCGATGAGAAAAGCATT+AGG 0.506223 8:-63339906 MsG0880045722.01.T01:CDS
CTAACCACTGCATCCACAAA+AGG 0.511567 8:+63336813 None:intergenic
AGGCTGATGCTATTGTTCAA+AGG 0.522927 8:-63338691 MsG0880045722.01.T01:CDS
TTGTAGGTTGTGGTATATCG+AGG 0.540015 8:-63337511 MsG0880045722.01.T01:intron
CCTTACTGATGGTCAATTGG+AGG 0.540032 8:-63338666 MsG0880045722.01.T01:CDS
TCGAAGCCATCTATGGTAGT+CGG 0.548169 8:+63340107 None:intergenic
TGTAACATTAGCAGAGGCTA+AGG 0.551921 8:-63339860 MsG0880045722.01.T01:intron
CCTCCAATTGACCATCAGTA+AGG 0.553474 8:+63338666 None:intergenic
GTTCAAAGGCTCCTTACTGA+TGG 0.563613 8:-63338677 MsG0880045722.01.T01:CDS
TCGATGAGAAAAGCATTAGG+AGG 0.569036 8:-63339903 MsG0880045722.01.T01:CDS
GAAGCACGGGAATTTGTCAA+AGG 0.571518 8:-63337457 MsG0880045722.01.T01:intron
TTCTGGTAGTCATGCAGCTG+TGG 0.575249 8:-63337343 MsG0880045722.01.T01:CDS
TGGATCAACTGATACAGTGA+TGG 0.582631 8:-63336400 MsG0880045722.01.T01:CDS
AACTAGTGAGAAAGAAGCAC+GGG 0.587195 8:-63337470 MsG0880045722.01.T01:CDS
GGATCAACTGATACAGTGAT+GGG 0.594746 8:-63336399 MsG0880045722.01.T01:CDS
TTTGGTTGTAACATTAGCAG+AGG 0.595928 8:-63339866 MsG0880045722.01.T01:CDS
AGTTACGTTCAATGTTGCTG+GGG 0.600972 8:-63336865 MsG0880045722.01.T01:CDS
CGATGAGAAAAGCATTAGGA+GGG 0.601676 8:-63339902 MsG0880045722.01.T01:CDS
GTTACGTTCAATGTTGCTGG+GGG 0.607225 8:-63336864 MsG0880045722.01.T01:CDS
GGAGCTTCTCAGATTGATGA+CGG 0.614648 8:-63336888 MsG0880045722.01.T01:intron
TGTGACCGGAAAACGTTATG+GGG 0.614753 8:-63337295 MsG0880045722.01.T01:CDS
GTGGTGACTAACCTTGTGAC+CGG 0.625151 8:-63337309 MsG0880045722.01.T01:CDS
GGTATATCGAGGAATAATCA+GGG 0.642261 8:-63337500 MsG0880045722.01.T01:CDS
TATTGCAGTCAGCCAGCACA+TGG 0.644926 8:+63336296 None:intergenic
AGCTGTGGTAGGATCTGTTG+TGG 0.650203 8:-63337328 MsG0880045722.01.T01:CDS
TTTCCTTGAAATACCAGACG+AGG 0.659346 8:-63337084 MsG0880045722.01.T01:CDS
TGATAAAACAAAATTCAGCA+AGG 0.661744 8:+63336199 None:intergenic
CAACTAGTGAGAAAGAAGCA+CGG 0.676827 8:-63337471 MsG0880045722.01.T01:CDS
GTGACCGGAAAACGTTATGG+GGG 0.688688 8:-63337294 MsG0880045722.01.T01:CDS
AAAACATTTGAATATCATCG+AGG 0.727353 8:+63336270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAATATATAAATAAAACT+TGG - Chr8:63338403-63338422 MsG0880045722.01.T01:intron 10.0%
!!! GTTTTATTTATATATTATGT+AGG + Chr8:63338402-63338421 None:intergenic 10.0%
!! ATATTGGAAAATGTAAAAAT+TGG + Chr8:63339713-63339732 None:intergenic 15.0%
!! GCATAAATAAAATAAAAAAG+TGG - Chr8:63338229-63338248 MsG0880045722.01.T01:intron 15.0%
!!! ACTAGATATAGTAAAATTTT+AGG + Chr8:63337291-63337310 None:intergenic 15.0%
!!! GATTTCTAATATGTTTATTT+TGG - Chr8:63337418-63337437 MsG0880045722.01.T01:intron 15.0%
!!! TCAATTTGAAGTTAAATTTA+GGG - Chr8:63337594-63337613 MsG0880045722.01.T01:intron 15.0%
!!! TGTATTTTGTATTACAAAAT+CGG + Chr8:63340095-63340114 None:intergenic 15.0%
!!! TTCTATCATTTAACTTATTT+AGG + Chr8:63337545-63337564 None:intergenic 15.0%
!! AAATTATGAAAAGGTCATAT+AGG + Chr8:63338743-63338762 None:intergenic 20.0%
!! AAGAAAACTCATATAGTATT+TGG + Chr8:63339415-63339434 None:intergenic 20.0%
!! AGAAAAATATGTACAAAAGA+AGG + Chr8:63338455-63338474 None:intergenic 20.0%
!! ATAATTACCAACAACAAAAA+AGG + Chr8:63338921-63338940 None:intergenic 20.0%
!! CTTTAATCATACAAGTAAAT+TGG + Chr8:63336373-63336392 None:intergenic 20.0%
!! TAATTACCAACAACAAAAAA+GGG + Chr8:63338920-63338939 None:intergenic 20.0%
!! TTTGTCAAAATAAGAATATG+TGG - Chr8:63337977-63337996 MsG0880045722.01.T01:intron 20.0%
!!! AATTAATTCTATTTGAAGCT+AGG - Chr8:63337059-63337078 MsG0880045722.01.T01:intron 20.0%
!!! ACCTTTTCATAATTTTCTTT+TGG - Chr8:63338748-63338767 MsG0880045722.01.T01:intron 20.0%
!!! ATATGAGTTTTCTTATTTGA+TGG - Chr8:63339421-63339440 MsG0880045722.01.T01:intron 20.0%
!!! ATCTTTTGAAATTTTCTTTC+AGG - Chr8:63339375-63339394 MsG0880045722.01.T01:intron 20.0%
!!! CTCAATTTGAAGTTAAATTT+AGG - Chr8:63337593-63337612 MsG0880045722.01.T01:intron 20.0%
!!! TATGAGTTTTCTTATTTGAT+GGG - Chr8:63339422-63339441 MsG0880045722.01.T01:intron 20.0%
!!! TTTTTGTTGTTGGTAATTAT+AGG - Chr8:63338921-63338940 MsG0880045722.01.T01:intron 20.0%
! AAAACATTTGAATATCATCG+AGG + Chr8:63340064-63340083 None:intergenic 25.0%
! AAAAGATGAAAATCAATGTG+AGG - Chr8:63336871-63336890 MsG0880045722.01.T01:CDS 25.0%
! AAACAAATTCTTGCTGAAAT+GGG - Chr8:63336294-63336313 MsG0880045722.01.T01:three_prime_UTR 25.0%
! AAACAACAAATATGAACTTG+TGG + Chr8:63337398-63337417 None:intergenic 25.0%
! AAATTGGAGCATAAGAAAAA+AGG + Chr8:63339697-63339716 None:intergenic 25.0%
! AACAAACAAATACTGAAAGA+TGG + Chr8:63337745-63337764 None:intergenic 25.0%
! AAGTATATCATAAAGTTGAG+AGG - Chr8:63337565-63337584 MsG0880045722.01.T01:intron 25.0%
! AATTACCAACAACAAAAAAG+GGG + Chr8:63338919-63338938 None:intergenic 25.0%
! CACAGATATTATCTGTAAAA+AGG + Chr8:63337857-63337876 None:intergenic 25.0%
! GCAACATAATAAGTTTACAA+AGG + Chr8:63338786-63338805 None:intergenic 25.0%
! GCCAAAAGAAAATTATGAAA+AGG + Chr8:63338752-63338771 None:intergenic 25.0%
! GTATAAATGAAGAAGAAGAA+AGG - Chr8:63337816-63337835 MsG0880045722.01.T01:intron 25.0%
! GTCAATGCTTCAAAATATAA+GGG + Chr8:63336561-63336580 None:intergenic 25.0%
! GTTAAGAAAACAGAGTAAAA+GGG + Chr8:63339882-63339901 None:intergenic 25.0%
! TAAAATTGTTCCAATATGAC+AGG - Chr8:63339220-63339239 MsG0880045722.01.T01:intron 25.0%
! TAACCTTGATATACTTCTTT+AGG - Chr8:63337620-63337639 MsG0880045722.01.T01:intron 25.0%
! TACATTTCGAACAAAAAGTA+TGG - Chr8:63338260-63338279 MsG0880045722.01.T01:intron 25.0%
! TCAAAATATAAGGGACAAAA+AGG + Chr8:63336552-63336571 None:intergenic 25.0%
! TGATAAAACAAAATTCAGCA+AGG + Chr8:63340135-63340154 None:intergenic 25.0%
! TGTCAATGCTTCAAAATATA+AGG + Chr8:63336562-63336581 None:intergenic 25.0%
! TGTTAAGAAAACAGAGTAAA+AGG + Chr8:63339883-63339902 None:intergenic 25.0%
! TTCTTATTAGAGGAAGTTTA+TGG + Chr8:63337522-63337541 None:intergenic 25.0%
! TTGAATAAAATCACATGTGT+CGG + Chr8:63336621-63336640 None:intergenic 25.0%
!! AATAAATGTTTTGTAGGTTG+TGG - Chr8:63338810-63338829 MsG0880045722.01.T01:intron 25.0%
!! AATATCTTTTTCCCCTTTTT+GGG - Chr8:63339728-63339747 MsG0880045722.01.T01:intron 25.0%
!! CCTTCTTACAAGATAATTTT+GGG - Chr8:63336252-63336271 MsG0880045722.01.T01:three_prime_UTR 25.0%
!! CTTATTTAGGTTCTTATTAG+AGG + Chr8:63337532-63337551 None:intergenic 25.0%
!! GCTACAAATAAATGTTTTGT+AGG - Chr8:63338804-63338823 MsG0880045722.01.T01:intron 25.0%
!! GTAATTGATTCTGATATGTT+TGG - Chr8:63337004-63337023 MsG0880045722.01.T01:intron 25.0%
!! TCCTTCTTACAAGATAATTT+TGG - Chr8:63336251-63336270 MsG0880045722.01.T01:three_prime_UTR 25.0%
!!! CTTCAGTTTTTTAAGCATAA+AGG + Chr8:63336783-63336802 None:intergenic 25.0%
!!! TGAATCGTTTTGAATTTTGA+TGG + Chr8:63339654-63339673 None:intergenic 25.0%
AAAAGCTTGTACTTTATGCT+CGG - Chr8:63340164-63340183 MsG0880045722.01.T01:five_prime_UTR 30.0%
AAACTTTCCCAATACCAAAT+TGG + Chr8:63338008-63338027 None:intergenic 30.0%
AAGAGAACATTAACTAAAGC+AGG - Chr8:63338372-63338391 MsG0880045722.01.T01:intron 30.0%
AATATGTGGTCAAACCAATT+TGG - Chr8:63337991-63338010 MsG0880045722.01.T01:intron 30.0%
AATGTTACAACCAAATCTTC+AGG + Chr8:63336460-63336479 None:intergenic 30.0%
ACATATTTCATTACGTACAC+CGG - Chr8:63338602-63338621 MsG0880045722.01.T01:intron 30.0%
ACTTAGTTGTGAACACTTAA+GGG - Chr8:63336822-63336841 MsG0880045722.01.T01:CDS 30.0%
ATATACATCTGCTCAAAAGT+TGG - Chr8:63338703-63338722 MsG0880045722.01.T01:intron 30.0%
ATGTATATAGAATGAGATGC+TGG + Chr8:63338691-63338710 None:intergenic 30.0%
ATTACCAACAACAAAAAAGG+GGG + Chr8:63338918-63338937 None:intergenic 30.0%
CAAAAAGGGGAAAAAGATAT+TGG + Chr8:63339729-63339748 None:intergenic 30.0%
CAAACAAATTCTTGCTGAAA+TGG - Chr8:63336293-63336312 MsG0880045722.01.T01:three_prime_UTR 30.0%
CCCAAAATTATCTTGTAAGA+AGG + Chr8:63336255-63336274 None:intergenic 30.0%
TACAACAATTTACCAGTCAT+TGG + Chr8:63336752-63336771 None:intergenic 30.0%
TACTTAGTTGTGAACACTTA+AGG - Chr8:63336821-63336840 MsG0880045722.01.T01:CDS 30.0%
TAGTTAATGTTCTCTTTCTC+TGG + Chr8:63338368-63338387 None:intergenic 30.0%
TATACATCTGCTCAAAAGTT+GGG - Chr8:63338704-63338723 MsG0880045722.01.T01:intron 30.0%
TATGAAATTAATCCCCAAGT+CGG + Chr8:63338134-63338153 None:intergenic 30.0%
TCAAAGTCTCTAATTACAGT+AGG - Chr8:63338203-63338222 MsG0880045722.01.T01:intron 30.0%
TCTAGAGAATGTTTGTTTCA+GGG - Chr8:63339837-63339856 MsG0880045722.01.T01:intron 30.0%
TCTTACAGAGAAACTCATAA+TGG - Chr8:63339967-63339986 MsG0880045722.01.T01:intron 30.0%
TGTATATAGAATGAGATGCT+GGG + Chr8:63338690-63338709 None:intergenic 30.0%
TTAGAGACTTTGACCTTAAT+AGG + Chr8:63338196-63338215 None:intergenic 30.0%
! AATCCAGATTGCTAGATTTT+AGG - Chr8:63339109-63339128 MsG0880045722.01.T01:intron 30.0%
! ACTGAACGATTGAAGTTTTT+AGG - Chr8:63337256-63337275 MsG0880045722.01.T01:intron 30.0%
! ATATAACTCAGGTTCTTTTC+CGG + Chr8:63338048-63338067 None:intergenic 30.0%
! ATATCTTTTTCCCCTTTTTG+GGG - Chr8:63339729-63339748 MsG0880045722.01.T01:intron 30.0%
! ATGTTTGACTTAATTCACAC+AGG + Chr8:63338104-63338123 None:intergenic 30.0%
! CAATATCTTTTTCCCCTTTT+TGG - Chr8:63339727-63339746 MsG0880045722.01.T01:intron 30.0%
! CATAAAGTACAAGCTTTTGT+TGG + Chr8:63340162-63340181 None:intergenic 30.0%
! CTCTAGAAAATTAACTCACT+TGG + Chr8:63339824-63339843 None:intergenic 30.0%
! CTGAACGATTGAAGTTTTTA+GGG - Chr8:63337257-63337276 MsG0880045722.01.T01:intron 30.0%
! TCAAAATTGTGTGATTTTGC+AGG - Chr8:63338962-63338981 MsG0880045722.01.T01:intron 30.0%
! TTCTAGAGAATGTTTGTTTC+AGG - Chr8:63339836-63339855 MsG0880045722.01.T01:intron 30.0%
!! AATTTCATAGTGGACACAAA+GGG - Chr8:63338145-63338164 MsG0880045722.01.T01:intron 30.0%
!! ATATCGATGAGAAAAGCATT+AGG - Chr8:63336425-63336444 MsG0880045722.01.T01:intron 30.0%
!! TAATTTCATAGTGGACACAA+AGG - Chr8:63338144-63338163 MsG0880045722.01.T01:intron 30.0%
!!! GATCAAATGTTTTGAGAAAC+CGG + Chr8:63339358-63339377 None:intergenic 30.0%
!!! TGATTTTGGTTTTTGCTTGT+TGG - Chr8:63336917-63336936 MsG0880045722.01.T01:intron 30.0%
AAAGCTTGTACTTTATGCTC+GGG - Chr8:63340165-63340184 MsG0880045722.01.T01:five_prime_UTR 35.0%
AACCAAACATACGAATGAAC+TGG + Chr8:63336967-63336986 None:intergenic 35.0%
AAGGCAAAGTGATTCATGTT+TGG + Chr8:63337158-63337177 None:intergenic 35.0%
AGACTCTAGGTATATAACTC+AGG + Chr8:63338059-63338078 None:intergenic 35.0%
AGAGGAAGTTTATGGTATTG+TGG + Chr8:63337514-63337533 None:intergenic 35.0%
AGATGAAAATCAATGTGAGG+AGG - Chr8:63336874-63336893 MsG0880045722.01.T01:CDS 35.0%
AGGAAATACACCTGTCATAT+TGG + Chr8:63339233-63339252 None:intergenic 35.0%
AGGAAGTTTATGGTATTGTG+GGG + Chr8:63337512-63337531 None:intergenic 35.0%
ATAAAAGAAAGCCCCCAAAA+AGG + Chr8:63339744-63339763 None:intergenic 35.0%
ATCTGTTCCATATAAGAGAG+TGG + Chr8:63338339-63338358 None:intergenic 35.0%
CATATTTCATTACGTACACC+GGG - Chr8:63338603-63338622 MsG0880045722.01.T01:intron 35.0%
CATCTAGTAAACTTCTGCTT+TGG + Chr8:63338292-63338311 None:intergenic 35.0%
CATTCTCAATGAGACTAAGT+TGG + Chr8:63337901-63337920 None:intergenic 35.0%
CTGGATTATAAATGAGCTCT+AGG + Chr8:63339096-63339115 None:intergenic 35.0%
CTTATTAGCTATCCAATGAC+TGG - Chr8:63336737-63336756 MsG0880045722.01.T01:intron 35.0%
CTTCAATCGTTCAGTATGTT+TGG + Chr8:63337251-63337270 None:intergenic 35.0%
CTTCCTAAAATCTAGCAATC+TGG + Chr8:63339115-63339134 None:intergenic 35.0%
CTTGGGGATTAATTTCATAG+TGG - Chr8:63338135-63338154 MsG0880045722.01.T01:intron 35.0%
GAGAATGCATATTGCTAATG+TGG + Chr8:63339605-63339624 None:intergenic 35.0%
GAGGAAGTTTATGGTATTGT+GGG + Chr8:63337513-63337532 None:intergenic 35.0%
GATAATCTGGGTACCTATTA+AGG - Chr8:63338180-63338199 MsG0880045722.01.T01:intron 35.0%
GATGAAAATCAATGTGAGGA+GGG - Chr8:63336875-63336894 MsG0880045722.01.T01:CDS 35.0%
GCAGTGATTAACAATGTTGT+AGG + Chr8:63337699-63337718 None:intergenic 35.0%
GGGATACGAATTCACAATAA+TGG - Chr8:63336314-63336333 MsG0880045722.01.T01:three_prime_UTR 35.0%
GGTATATCGAGGAATAATCA+GGG - Chr8:63338831-63338850 MsG0880045722.01.T01:intron 35.0%
GGTCAAACCAATTTGGTATT+GGG - Chr8:63337998-63338017 MsG0880045722.01.T01:intron 35.0%
GTATATAGAATGAGATGCTG+GGG + Chr8:63338689-63338708 None:intergenic 35.0%
TAAAAGAAAGCCCCCAAAAA+GGG + Chr8:63339743-63339762 None:intergenic 35.0%
TACCAGTTCATTCGTATGTT+TGG - Chr8:63336962-63336981 MsG0880045722.01.T01:intron 35.0%
TGACTTAATTCACACAGGAT+AGG + Chr8:63338099-63338118 None:intergenic 35.0%
TGGTATATCGAGGAATAATC+AGG - Chr8:63338830-63338849 MsG0880045722.01.T01:intron 35.0%
TGGTCAAACCAATTTGGTAT+TGG - Chr8:63337997-63338016 MsG0880045722.01.T01:intron 35.0%
TTACCAACAACAAAAAAGGG+GGG + Chr8:63338917-63338936 None:intergenic 35.0%
TTTGGTTGTAACATTAGCAG+AGG - Chr8:63336465-63336484 MsG0880045722.01.T01:intron 35.0%
! AATTACGACCTCTTTAGAAG+TGG + Chr8:63336990-63337009 None:intergenic 35.0%
! CAAAATTCAGCAAGGTATCA+AGG + Chr8:63340127-63340146 None:intergenic 35.0%
! CAGCCTAAAGAAGTATATCA+AGG + Chr8:63337626-63337645 None:intergenic 35.0%
! GGAGTGAGATGAAATGATTT+TGG - Chr8:63336903-63336922 MsG0880045722.01.T01:intron 35.0%
! TATAACTCAGGTTCTTTTCC+GGG + Chr8:63338047-63338066 None:intergenic 35.0%
! TATCTTTTTCCCCTTTTTGG+GGG - Chr8:63339730-63339749 MsG0880045722.01.T01:intron 35.0%
! TCTGACTAAAAGTGAGTTGA+AGG + Chr8:63337177-63337196 None:intergenic 35.0%
! TGTGATTTTGCAGGATATTC+TGG - Chr8:63338971-63338990 MsG0880045722.01.T01:intron 35.0%
!! ATTTTGGAAGAACCAGTCTA+AGG - Chr8:63337434-63337453 MsG0880045722.01.T01:intron 35.0%
!! GGTGAAAAGAGTACTTTAAC+CGG - Chr8:63339336-63339355 MsG0880045722.01.T01:intron 35.0%
!! TTGAATTTTGATGGCAACGA+GGG + Chr8:63339645-63339664 None:intergenic 35.0%
!! TTTGAATTTTGATGGCAACG+AGG + Chr8:63339646-63339665 None:intergenic 35.0%
!! TTTTGATTGATACCATGTGC+TGG - Chr8:63340023-63340042 MsG0880045722.01.T01:CDS 35.0%
AAAAGAAAGCCCCCAAAAAG+GGG + Chr8:63339742-63339761 None:intergenic 40.0%
AATAGCATCAGAATGTGAGC+TGG + Chr8:63337933-63337952 None:intergenic 40.0%
AATGATCTGTGTGATCCTTG+TGG - Chr8:63339903-63339922 MsG0880045722.01.T01:CDS 40.0%
AGATTATCAATGACCTCGTC+TGG + Chr8:63339263-63339282 None:intergenic 40.0%
AGGCTGATGCTATTGTTCAA+AGG - Chr8:63337640-63337659 MsG0880045722.01.T01:intron 40.0%
AGTTACGTTCAATGTTGCTG+GGG - Chr8:63339466-63339485 MsG0880045722.01.T01:intron 40.0%
ATAGCATCAGAATGTGAGCT+GGG + Chr8:63337932-63337951 None:intergenic 40.0%
ATCAATGTGAGGAGGGAAAA+TGG - Chr8:63336882-63336901 MsG0880045722.01.T01:intron 40.0%
ATGTACAGAAGAACCCACTT+GGG + Chr8:63338586-63338605 None:intergenic 40.0%
ATTGACACTTCTCATCCAAG+GGG - Chr8:63336575-63336594 MsG0880045722.01.T01:intron 40.0%
CAACTAGTGAGAAAGAAGCA+CGG - Chr8:63338860-63338879 MsG0880045722.01.T01:intron 40.0%
CAGTGTCTGAGCCAAATATT+TGG + Chr8:63338629-63338648 None:intergenic 40.0%
CATTGACACTTCTCATCCAA+GGG - Chr8:63336574-63336593 MsG0880045722.01.T01:intron 40.0%
CTAGTAAACTTCTGCTTTGG+AGG + Chr8:63338289-63338308 None:intergenic 40.0%
GAGTTACGTTCAATGTTGCT+GGG - Chr8:63339465-63339484 MsG0880045722.01.T01:intron 40.0%
GAGTTTCTCTGTAAGAGCTT+TGG + Chr8:63339963-63339982 None:intergenic 40.0%
GATGTCTGAGAAATGAGTGA+AGG + Chr8:63339797-63339816 None:intergenic 40.0%
GGATCAACTGATACAGTGAT+GGG - Chr8:63339932-63339951 MsG0880045722.01.T01:intron 40.0%
GGGACAAAAAGGATTCAGAA+TGG + Chr8:63336541-63336560 None:intergenic 40.0%
TACCAACAACAAAAAAGGGG+GGG + Chr8:63338916-63338935 None:intergenic 40.0%
TATGTACAGAAGAACCCACT+TGG + Chr8:63338587-63338606 None:intergenic 40.0%
TCATACTTAGCTCAGTGCAA+GGG + Chr8:63339315-63339334 None:intergenic 40.0%
TCGTTCTCCACTCTCTTATA+TGG - Chr8:63338329-63338348 MsG0880045722.01.T01:intron 40.0%
TCTGCAATGTGCTGTGTTAT+CGG + Chr8:63337482-63337501 None:intergenic 40.0%
TGAAAGGCTGAGAAAGACAA+TGG - Chr8:63337370-63337389 MsG0880045722.01.T01:intron 40.0%
TGCTCACTGTTGAACTTGAA+AGG - Chr8:63337354-63337373 MsG0880045722.01.T01:intron 40.0%
TGGATCAACTGATACAGTGA+TGG - Chr8:63339931-63339950 MsG0880045722.01.T01:intron 40.0%
TGTAACATTAGCAGAGGCTA+AGG - Chr8:63336471-63336490 MsG0880045722.01.T01:intron 40.0%
TGTTTCAGGGTGATGTAATG+TGG - Chr8:63339850-63339869 MsG0880045722.01.T01:intron 40.0%
TTCATACTTAGCTCAGTGCA+AGG + Chr8:63339316-63339335 None:intergenic 40.0%
TTGCACTGAGCTAAGTATGA+AGG - Chr8:63339315-63339334 MsG0880045722.01.T01:intron 40.0%
TTGTAGGTTGTGGTATATCG+AGG - Chr8:63338820-63338839 MsG0880045722.01.T01:intron 40.0%
TTGTGACCGGAAAACGTTAT+GGG - Chr8:63339035-63339054 MsG0880045722.01.T01:intron 40.0%
TTGTGATATGACTATCCTCC+CGG - Chr8:63338026-63338045 MsG0880045722.01.T01:intron 40.0%
TTTCCTTGAAATACCAGACG+AGG - Chr8:63339247-63339266 MsG0880045722.01.T01:intron 40.0%
! AACTAGTGAGAAAGAAGCAC+GGG - Chr8:63338861-63338880 MsG0880045722.01.T01:intron 40.0%
! AATATTTGGCTCAGACACTG+CGG - Chr8:63338629-63338648 MsG0880045722.01.T01:CDS 40.0%
! AGACGAGGTCATTGATAATC+TGG - Chr8:63339262-63339281 MsG0880045722.01.T01:intron 40.0%
! GTTTGGTTCCACTTCTAAAG+AGG - Chr8:63336979-63336998 MsG0880045722.01.T01:intron 40.0%
!! CGATGAGAAAAGCATTAGGA+GGG - Chr8:63336429-63336448 MsG0880045722.01.T01:intron 40.0%
!! GGATTTTTCGAAGCCATCTA+TGG + Chr8:63336234-63336253 None:intergenic 40.0%
!! TCGATGAGAAAAGCATTAGG+AGG - Chr8:63336428-63336447 MsG0880045722.01.T01:intron 40.0%
AAACATCCTGCTTCCGACTT+GGG - Chr8:63338118-63338137 MsG0880045722.01.T01:intron 45.0%
AGTTGATCCAACCTACCACA+AGG + Chr8:63339921-63339940 None:intergenic 45.0%
ATACCTAGAGTCTCCCAGTT+GGG - Chr8:63338066-63338085 MsG0880045722.01.T01:intron 45.0%
ATCACCAAACCAACCCAAGT+GGG - Chr8:63338570-63338589 MsG0880045722.01.T01:intron 45.0%
ATCTGTGTGATCCTTGTGGT+AGG - Chr8:63339907-63339926 MsG0880045722.01.T01:CDS 45.0%
CAGATGCAAAGACCTTAGAC+TGG + Chr8:63337449-63337468 None:intergenic 45.0%
CCTAGTTGTGGGGATAATCT+GGG - Chr8:63338168-63338187 MsG0880045722.01.T01:intron 45.0%
CCTCCAATTGACCATCAGTA+AGG + Chr8:63337668-63337687 None:intergenic 45.0%
CCTTACTGATGGTCAATTGG+AGG - Chr8:63337665-63337684 MsG0880045722.01.T01:intron 45.0%
CGTGCTTCTTTCTCACTAGT+TGG + Chr8:63338862-63338881 None:intergenic 45.0%
CTAACCACTGCATCCACAAA+AGG + Chr8:63339521-63339540 None:intergenic 45.0%
CTAGCCCACTCAAATTGAAC+CGG - Chr8:63338492-63338511 MsG0880045722.01.T01:intron 45.0%
CTTGTGACCGGAAAACGTTA+TGG - Chr8:63339034-63339053 MsG0880045722.01.T01:intron 45.0%
GAAGCACGGGAATTTGTCAA+AGG - Chr8:63338874-63338893 MsG0880045722.01.T01:intron 45.0%
GAGGGAAAAGCCTGAAGATT+TGG - Chr8:63336447-63336466 MsG0880045722.01.T01:intron 45.0%
GCTCCTTACTGATGGTCAAT+TGG - Chr8:63337662-63337681 MsG0880045722.01.T01:intron 45.0%
GGAGCTTCTCAGATTGATGA+CGG - Chr8:63339443-63339462 MsG0880045722.01.T01:intron 45.0%
GGAGTTACGTTCAATGTTGC+TGG - Chr8:63339464-63339483 MsG0880045722.01.T01:intron 45.0%
GTCAGTCAAGTTATCTGCGA+AGG + Chr8:63339195-63339214 None:intergenic 45.0%
GTTACGTTCAATGTTGCTGG+GGG - Chr8:63339467-63339486 MsG0880045722.01.T01:intron 45.0%
GTTCAAAGGCTCCTTACTGA+TGG - Chr8:63337654-63337673 MsG0880045722.01.T01:intron 45.0%
TAGCATCAGAATGTGAGCTG+GGG + Chr8:63337931-63337950 None:intergenic 45.0%
TAGCCCACTCAAATTGAACC+GGG - Chr8:63338493-63338512 MsG0880045722.01.T01:intron 45.0%
TATACCTAGAGTCTCCCAGT+TGG - Chr8:63338065-63338084 MsG0880045722.01.T01:intron 45.0%
TCCACAAAAGGCAACGTCAA+TGG + Chr8:63339509-63339528 None:intergenic 45.0%
TCGAAGCCATCTATGGTAGT+CGG + Chr8:63336227-63336246 None:intergenic 45.0%
TCTGAGCCAAATATTTGGCC+CGG + Chr8:63338624-63338643 None:intergenic 45.0%
TGACCTCGTCTGGTATTTCA+AGG + Chr8:63339253-63339272 None:intergenic 45.0%
TGTGACCGGAAAACGTTATG+GGG - Chr8:63339036-63339055 MsG0880045722.01.T01:intron 45.0%
! CATAACGTTTTCCGGTCACA+AGG + Chr8:63339036-63339055 None:intergenic 45.0%
! GCATTGACACTTCTCATCCA+AGG - Chr8:63336573-63336592 MsG0880045722.01.T01:intron 45.0%
! TCCATTGACGTTGCCTTTTG+TGG - Chr8:63339505-63339524 MsG0880045722.01.T01:intron 45.0%
! TGAGACTAAGTTGGCAGAAC+AGG + Chr8:63337892-63337911 None:intergenic 45.0%
!! TGGTTTGGTGATGTTGGCTT+GGG + Chr8:63338562-63338581 None:intergenic 45.0%
!! TTGGGTTGGTTTGGTGATGT+TGG + Chr8:63338568-63338587 None:intergenic 45.0%
!! TTGGTTTGGTGATGTTGGCT+TGG + Chr8:63338563-63338582 None:intergenic 45.0%
ACACAAAGGGCCTAGTTGTG+GGG - Chr8:63338158-63338177 MsG0880045722.01.T01:intron 50.0%
ACAGAAGAACCCACTTGGGT+TGG + Chr8:63338582-63338601 None:intergenic 50.0%
ACTAGATGTTCCCCAGCCAT+GGG - Chr8:63338304-63338323 MsG0880045722.01.T01:intron 50.0%
AGCCCACTCAAATTGAACCG+GGG - Chr8:63338494-63338513 MsG0880045722.01.T01:intron 50.0%
AGCTGTGGTAGGATCTGTTG+TGG - Chr8:63339003-63339022 MsG0880045722.01.T01:intron 50.0%
CAAACATCCTGCTTCCGACT+TGG - Chr8:63338117-63338136 MsG0880045722.01.T01:intron 50.0%
CATCACCAAACCAACCCAAG+TGG - Chr8:63338569-63338588 MsG0880045722.01.T01:intron 50.0%
CCCAGATTATCCCCACAACT+AGG + Chr8:63338171-63338190 None:intergenic 50.0%
CGGAAAACGTTATGGGGGAT+GGG - Chr8:63339042-63339061 MsG0880045722.01.T01:intron 50.0%
CGTACACCGGGCCAAATATT+TGG - Chr8:63338615-63338634 MsG0880045722.01.T01:intron 50.0%
CTCCCCGGTTCAATTTGAGT+GGG + Chr8:63338499-63338518 None:intergenic 50.0%
GACACAAAGGGCCTAGTTGT+GGG - Chr8:63338157-63338176 MsG0880045722.01.T01:intron 50.0%
GCCTAGTTGTGGGGATAATC+TGG - Chr8:63338167-63338186 MsG0880045722.01.T01:intron 50.0%
GTGACCGGAAAACGTTATGG+GGG - Chr8:63339037-63339056 MsG0880045722.01.T01:intron 50.0%
GTGGTGACTAACCTTGTGAC+CGG - Chr8:63339022-63339041 MsG0880045722.01.T01:intron 50.0%
GTGTGATCCTTGTGGTAGGT+TGG - Chr8:63339911-63339930 MsG0880045722.01.T01:CDS 50.0%
TACTAGATGTTCCCCAGCCA+TGG - Chr8:63338303-63338322 MsG0880045722.01.T01:intron 50.0%
TATTGCAGTCAGCCAGCACA+TGG + Chr8:63340038-63340057 None:intergenic 50.0%
TCTCCCCGGTTCAATTTGAG+TGG + Chr8:63338500-63338519 None:intergenic 50.0%
TTAATCCCCAAGTCGGAAGC+AGG + Chr8:63338127-63338146 None:intergenic 50.0%
TTCTGGTAGTCATGCAGCTG+TGG - Chr8:63338988-63339007 MsG0880045722.01.T01:intron 50.0%
! AACACGCCGACTACCATAGA+TGG - Chr8:63336218-63336237 MsG0880045722.01.T01:three_prime_UTR 50.0%
! AACATCCTGCTTCCGACTTG+GGG - Chr8:63338119-63338138 MsG0880045722.01.T01:intron 50.0%
! AACTCAGGTTCTTTTCCGGG+AGG + Chr8:63338044-63338063 None:intergenic 50.0%
! CCATCCCCCATAACGTTTTC+CGG + Chr8:63339044-63339063 None:intergenic 50.0%
! GTTGCCTTTTGTGGATGCAG+TGG - Chr8:63339514-63339533 MsG0880045722.01.T01:intron 50.0%
!! AGAACCCACTTGGGTTGGTT+TGG + Chr8:63338577-63338596 None:intergenic 50.0%
!! TGTCAAGTGTTGACACCCCT+TGG + Chr8:63336593-63336612 None:intergenic 50.0%
!!! AGCCCCCCCTTTTTTGTTGT+TGG - Chr8:63338911-63338930 MsG0880045722.01.T01:intron 50.0%
AGAGTGGAGAACGAAGCCCA+TGG + Chr8:63338323-63338342 None:intergenic 55.0%
CATCAGAATGTGAGCTGGGG+TGG + Chr8:63337928-63337947 None:intergenic 55.0%
CCGGAAAACGTTATGGGGGA+TGG - Chr8:63339041-63339060 MsG0880045722.01.T01:intron 55.0%
GAGTCGAACCTGAGACCTTG+AGG - Chr8:63338518-63338537 MsG0880045722.01.T01:intron 55.0%
GATAGGACTGCCTCCCAACT+GGG + Chr8:63338082-63338101 None:intergenic 55.0%
GGACACAAAGGGCCTAGTTG+TGG - Chr8:63338156-63338175 MsG0880045722.01.T01:intron 55.0%
GGTAGTCATGCAGCTGTGGT+AGG - Chr8:63338992-63339011 MsG0880045722.01.T01:intron 55.0%
TCGAACCTGAGACCTTGAGG+AGG - Chr8:63338521-63338540 MsG0880045722.01.T01:intron 55.0%
TGTTGCTGGGGGTTTGATGC+TGG - Chr8:63339478-63339497 MsG0880045722.01.T01:intron 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG + Chr8:63338536-63338555 None:intergenic 55.0%
! TTGAGGAGGAGCACACTCCA+AGG - Chr8:63338535-63338554 MsG0880045722.01.T01:intron 55.0%
!! GTGATGTTGGCTTGGGACCT+TGG + Chr8:63338555-63338574 None:intergenic 55.0%
CCTAGAGTCTCCCAGTTGGG+AGG - Chr8:63338069-63338088 MsG0880045722.01.T01:intron 60.0%
CCTCCCAACTGGGAGACTCT+AGG + Chr8:63338072-63338091 None:intergenic 60.0%
GAGAACGAAGCCCATGGCTG+GGG + Chr8:63338317-63338336 None:intergenic 60.0%
GGAGAACGAAGCCCATGGCT+GGG + Chr8:63338318-63338337 None:intergenic 60.0%
GGATAGGACTGCCTCCCAAC+TGG + Chr8:63338083-63338102 None:intergenic 60.0%
GTCTCAGGTTCGACTCTCCC+CGG + Chr8:63338514-63338533 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG + Chr8:63338529-63338548 None:intergenic 60.0%
TGGAGAACGAAGCCCATGGC+TGG + Chr8:63338319-63338338 None:intergenic 60.0%
! TGGGGGATGGGAGAGTGCAG+AGG - Chr8:63339054-63339073 MsG0880045722.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 63336169 63340184 63336169 ID=MsG0880045722.01;Name=MsG0880045722.01
Chr8 mRNA 63336169 63340184 63336169 ID=MsG0880045722.01.T01;Parent=MsG0880045722.01;Name=MsG0880045722.01.T01;_AED=0.39;_eAED=0.39;_QI=68|1|1|1|1|1|8|184|204
Chr8 exon 63336169 63336424 63336169 ID=MsG0880045722.01.T01:exon:13224;Parent=MsG0880045722.01.T01
Chr8 exon 63336818 63336898 63336818 ID=MsG0880045722.01.T01:exon:13223;Parent=MsG0880045722.01.T01
Chr8 exon 63337070 63337111 63337070 ID=MsG0880045722.01.T01:exon:13222;Parent=MsG0880045722.01.T01
Chr8 exon 63337278 63337369 63337278 ID=MsG0880045722.01.T01:exon:13221;Parent=MsG0880045722.01.T01
Chr8 exon 63337458 63337527 63337458 ID=MsG0880045722.01.T01:exon:13220;Parent=MsG0880045722.01.T01
Chr8 exon 63338628 63338711 63338628 ID=MsG0880045722.01.T01:exon:13219;Parent=MsG0880045722.01.T01
Chr8 exon 63339861 63339935 63339861 ID=MsG0880045722.01.T01:exon:13218;Parent=MsG0880045722.01.T01
Chr8 exon 63340018 63340184 63340018 ID=MsG0880045722.01.T01:exon:13217;Parent=MsG0880045722.01.T01
Chr8 five_prime_UTR 63340117 63340184 63340117 ID=MsG0880045722.01.T01:five_prime_utr;Parent=MsG0880045722.01.T01
Chr8 CDS 63340018 63340116 63340018 ID=MsG0880045722.01.T01:cds;Parent=MsG0880045722.01.T01
Chr8 CDS 63339861 63339935 63339861 ID=MsG0880045722.01.T01:cds;Parent=MsG0880045722.01.T01
Chr8 CDS 63338628 63338711 63338628 ID=MsG0880045722.01.T01:cds;Parent=MsG0880045722.01.T01
Chr8 CDS 63337458 63337527 63337458 ID=MsG0880045722.01.T01:cds;Parent=MsG0880045722.01.T01
Chr8 CDS 63337278 63337369 63337278 ID=MsG0880045722.01.T01:cds;Parent=MsG0880045722.01.T01
Chr8 CDS 63337070 63337111 63337070 ID=MsG0880045722.01.T01:cds;Parent=MsG0880045722.01.T01
Chr8 CDS 63336818 63336898 63336818 ID=MsG0880045722.01.T01:cds;Parent=MsG0880045722.01.T01
Chr8 CDS 63336353 63336424 63336353 ID=MsG0880045722.01.T01:cds;Parent=MsG0880045722.01.T01
Chr8 three_prime_UTR 63336169 63336352 63336169 ID=MsG0880045722.01.T01:three_prime_utr;Parent=MsG0880045722.01.T01
Gene Sequence

>MsG0880045722.01.T01

ATGGCTTCGAAAAATCCTTCTTACAAGATAATTTTGGGTTCTTCTTCTAAAGCTCGCAAACAAATTCTTGCTGAAATGGGATACGAATTCACAATAATGACTGCAGATATCGATGAGAAAAGCATTAGGAGGGAAAAGCCTGAAGATTTGGTTGTAACATTAGCAGAGGCTAAGGCTGATGCTATTGTTCAAAGGCTCCTTACTGATGGTCAATTGGAGGCAGATGCTCCTACAACATTGTTAATCACTGCAGACACTGTTGTGGTATATCGAGGAATAATCAGGGAAAAACCAACTAGTGAGAAAGAAGCACGGGAATTTGTCAAAGGATATTCTGGTAGTCATGCAGCTGTGGTAGGATCTGTTGTGGTGACTAACCTTGTGACCGGAAAACGTTATGGGGGATGGGAGAGTGCAGAGGTGTATTTCCTTGAAATACCAGACGAGGTCATTGATAATCTGATTGATGACGGAGTTACGTTCAATGTTGCTGGGGGTTTGATGCTGGAACATCCATTGACGTTGCCTTTTGTGGATGCAGTGGTTGGATCAACTGATACAGTGATGGGACTTTCCAAAGCTCTTACAGAGAAACTCATAATGGAAGCTCTATAG

Protein sequence

>MsG0880045722.01.T01

MASKNPSYKIILGSSSKARKQILAEMGYEFTIMTADIDEKSIRREKPEDLVVTLAEAKADAIVQRLLTDGQLEADAPTTLLITADTVVVYRGIIREKPTSEKEAREFVKGYSGSHAAVVGSVVVTNLVTGKRYGGWESAEVYFLEIPDEVIDNLIDDGVTFNVAGGLMLEHPLTLPFVDAVVGSTDTVMGLSKALTEKLIMEAL*