Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046922.01.T01 | XP_013458162.1 | 78.868 | 530 | 52 | 10 | 1 | 488 | 1 | 512 | 6.35E-132 | 402 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046922.01.T01 | Q9M8K5 | 51.736 | 288 | 94 | 9 | 1 | 276 | 1 | 255 | 2.48E-44 | 165 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046922.01.T01 | A0A072USX2 | 78.868 | 530 | 52 | 10 | 1 | 488 | 1 | 512 | 3.04e-132 | 402 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048701.01 | MsG0880046922.01 | 0.802589 | 5.222197e-49 | 2.567951e-46 |
MsG0080048996.01 | MsG0880046922.01 | 0.861122 | 1.280405e-63 | 3.583622e-60 |
MsG0080049140.01 | MsG0880046922.01 | 0.814065 | 1.862297e-51 | 1.237050e-48 |
MsG0180000111.01 | MsG0880046922.01 | 0.816173 | 6.339497e-52 | 4.459677e-49 |
MsG0180000373.01 | MsG0880046922.01 | 0.803494 | 3.394807e-49 | 1.708441e-46 |
MsG0880044782.01 | MsG0880046922.01 | 0.801992 | 6.929494e-49 | 3.355995e-46 |
MsG0880045890.01 | MsG0880046922.01 | 0.823400 | 1.413731e-53 | 1.215829e-50 |
MsG0880045900.01 | MsG0880046922.01 | 0.837808 | 4.176443e-57 | 5.487629e-54 |
MsG0880046446.01 | MsG0880046922.01 | 0.802653 | 5.065308e-49 | 2.494790e-46 |
MsG0880046922.01 | MsG0880046991.01 | 0.823087 | 1.673041e-53 | 1.426433e-50 |
MsG0180003427.01 | MsG0880046922.01 | 0.848698 | 5.194064e-60 | 9.612951e-57 |
MsG0180004661.01 | MsG0880046922.01 | 0.843256 | 1.567161e-58 | 2.437912e-55 |
MsG0180005002.01 | MsG0880046922.01 | 0.836602 | 8.500533e-57 | 1.076465e-53 |
MsG0180005667.01 | MsG0880046922.01 | 0.808369 | 3.203531e-50 | 1.828483e-47 |
MsG0280006311.01 | MsG0880046922.01 | 0.814197 | 1.741296e-51 | 1.160761e-48 |
MsG0780040364.01 | MsG0880046922.01 | 0.800512 | 1.391967e-48 | 6.493458e-46 |
MsG0780040472.01 | MsG0880046922.01 | 0.803061 | 4.171774e-49 | 2.076137e-46 |
MsG0780040482.01 | MsG0880046922.01 | 0.832366 | 9.848575e-56 | 1.098418e-52 |
MsG0780040509.01 | MsG0880046922.01 | 0.886976 | 2.138511e-72 | 1.560980e-68 |
MsG0780040896.01 | MsG0880046922.01 | 0.805157 | 1.528651e-49 | 8.029273e-47 |
MsG0780041063.01 | MsG0880046922.01 | 0.868173 | 7.949803e-66 | 2.848714e-62 |
MsG0780041271.01 | MsG0880046922.01 | 0.820092 | 8.231217e-53 | 6.451666e-50 |
MsG0780041735.01 | MsG0880046922.01 | 0.800118 | 1.674276e-48 | 7.732742e-46 |
MsG0880042046.01 | MsG0880046922.01 | 0.815804 | 7.660766e-52 | 5.335119e-49 |
MsG0880042791.01 | MsG0880046922.01 | 0.843602 | 1.266794e-58 | 1.992359e-55 |
MsG0880042906.01 | MsG0880046922.01 | 0.835237 | 1.886555e-56 | 2.293229e-53 |
MsG0880043637.01 | MsG0880046922.01 | 0.826180 | 3.125227e-54 | 2.909451e-51 |
MsG0380012471.01 | MsG0880046922.01 | 0.801188 | 1.012798e-48 | 4.806489e-46 |
MsG0380014130.01 | MsG0880046922.01 | 0.801813 | 7.542210e-49 | 3.636249e-46 |
MsG0380014132.01 | MsG0880046922.01 | 0.817104 | 3.919913e-52 | 2.828694e-49 |
MsG0680032499.01 | MsG0880046922.01 | 0.807918 | 3.996330e-50 | 2.253833e-47 |
MsG0680034598.01 | MsG0880046922.01 | 0.804981 | 1.664151e-49 | 8.701569e-47 |
MsG0480019635.01 | MsG0880046922.01 | 0.847234 | 1.315320e-59 | 2.322676e-56 |
MsG0480022167.01 | MsG0880046922.01 | 0.822376 | 2.448314e-53 | 2.045779e-50 |
MsG0480022313.01 | MsG0880046922.01 | 0.818812 | 1.612268e-52 | 1.219325e-49 |
MsG0480022325.01 | MsG0880046922.01 | 0.855302 | 6.909906e-62 | 1.588199e-58 |
MsG0480022998.01 | MsG0880046922.01 | 0.826341 | 2.861297e-54 | 2.676042e-51 |
MsG0480023762.01 | MsG0880046922.01 | 0.819385 | 1.194466e-52 | 9.177555e-50 |
MsG0480023832.01 | MsG0880046922.01 | 0.808319 | 3.282708e-50 | 1.871209e-47 |
MsG0580024388.01 | MsG0880046922.01 | 0.850064 | 2.161534e-60 | 4.182784e-57 |
MsG0580024758.01 | MsG0880046922.01 | 0.853125 | 2.938216e-61 | 6.281740e-58 |
MsG0580024954.01 | MsG0880046922.01 | 0.800750 | 1.244752e-48 | 5.841850e-46 |
MsG0580025766.01 | MsG0880046922.01 | 0.842071 | 3.233446e-58 | 4.846376e-55 |
MsG0380015189.01 | MsG0880046922.01 | 0.823637 | 1.244398e-53 | 1.077563e-50 |
MsG0380015350.01 | MsG0880046922.01 | 0.875489 | 2.958839e-68 | 1.383949e-64 |
MsG0380015548.01 | MsG0880046922.01 | 0.811109 | 8.250952e-51 | 5.063295e-48 |
MsG0380015816.01 | MsG0880046922.01 | 0.828678 | 7.865180e-55 | 7.872336e-52 |
MsG0380015825.01 | MsG0880046922.01 | 0.809388 | 1.939742e-50 | 1.137398e-47 |
MsG0380016703.01 | MsG0880046922.01 | 0.862316 | 5.524098e-64 | 1.610875e-60 |
MsG0380017091.01 | MsG0880046922.01 | 0.821234 | 4.499225e-53 | 3.639716e-50 |
MsG0380017159.01 | MsG0880046922.01 | 0.827219 | 1.765522e-54 | 1.693594e-51 |
MsG0380017164.01 | MsG0880046922.01 | 0.803515 | 3.359760e-49 | 1.691761e-46 |
MsG0380017240.01 | MsG0880046922.01 | 0.842091 | 3.196127e-58 | 4.793474e-55 |
MsG0480018397.01 | MsG0880046922.01 | 0.846381 | 2.251285e-59 | 3.867909e-56 |
MsG0580026145.01 | MsG0880046922.01 | 0.815183 | 1.053621e-51 | 7.213101e-49 |
MsG0580028060.01 | MsG0880046922.01 | 0.839461 | 1.563074e-57 | 2.160102e-54 |
MsG0580028330.01 | MsG0880046922.01 | 0.836467 | 9.202340e-57 | 1.160725e-53 |
MsG0280007196.01 | MsG0880046922.01 | 0.862824 | 3.854966e-64 | 1.144466e-60 |
MsG0280009783.01 | MsG0880046922.01 | 0.803285 | 3.749141e-49 | 1.876594e-46 |
MsG0780038373.01 | MsG0880046922.01 | 0.856230 | 3.701558e-62 | 8.773306e-59 |
MsG0780039137.01 | MsG0880046922.01 | 0.816354 | 5.775694e-52 | 4.083239e-49 |
MsG0780039189.01 | MsG0880046922.01 | 0.821078 | 4.887976e-53 | 3.937395e-50 |
MsG0780039303.01 | MsG0880046922.01 | 0.828589 | 8.263825e-55 | 8.249936e-52 |
MsG0780039578.01 | MsG0880046922.01 | 0.818939 | 1.508793e-52 | 1.145278e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046922.01.T01 | MTR_4g117220 | 78.868 | 530 | 52 | 10 | 1 | 488 | 1 | 512 | 7.70e-136 | 402 |
MsG0880046922.01.T01 | MTR_4g117140 | 87.372 | 293 | 23 | 4 | 1 | 293 | 1 | 279 | 3.81e-88 | 280 |
MsG0880046922.01.T01 | MTR_2g022250 | 64.865 | 259 | 65 | 10 | 1 | 255 | 1 | 237 | 5.53e-56 | 194 |
MsG0880046922.01.T01 | MTR_2g022240 | 49.248 | 532 | 172 | 22 | 1 | 488 | 1 | 478 | 2.23e-50 | 179 |
MsG0880046922.01.T01 | MTR_1g107565 | 70.513 | 78 | 20 | 1 | 1 | 75 | 1 | 78 | 1.44e-29 | 119 |
MsG0880046922.01.T01 | MTR_1g082650 | 46.296 | 216 | 66 | 5 | 1 | 215 | 1 | 167 | 1.92e-29 | 122 |
MsG0880046922.01.T01 | MTR_4g119820 | 50.000 | 114 | 41 | 3 | 7 | 120 | 71 | 168 | 2.55e-24 | 104 |
MsG0880046922.01.T01 | MTR_7g108560 | 67.143 | 70 | 23 | 0 | 5 | 74 | 17 | 86 | 3.58e-24 | 102 |
MsG0880046922.01.T01 | MTR_3g067750 | 53.521 | 71 | 33 | 0 | 3 | 73 | 5 | 75 | 4.85e-19 | 85.9 |
MsG0880046922.01.T01 | MTR_1g083310 | 57.333 | 75 | 31 | 1 | 4 | 77 | 9 | 83 | 8.31e-19 | 88.6 |
MsG0880046922.01.T01 | MTR_7g113110 | 53.521 | 71 | 33 | 0 | 9 | 79 | 32 | 102 | 2.46e-18 | 87.0 |
MsG0880046922.01.T01 | MTR_2g436830 | 60.000 | 70 | 28 | 0 | 5 | 74 | 10 | 79 | 2.67e-17 | 82.8 |
MsG0880046922.01.T01 | MTR_5g097550 | 59.375 | 64 | 25 | 1 | 12 | 74 | 15 | 78 | 1.04e-15 | 77.4 |
MsG0880046922.01.T01 | MTR_1g092670 | 39.189 | 74 | 45 | 0 | 10 | 83 | 4 | 77 | 2.35e-13 | 65.9 |
MsG0880046922.01.T01 | MTR_8g091420 | 52.459 | 61 | 29 | 0 | 14 | 74 | 33 | 93 | 9.14e-13 | 66.2 |
MsG0880046922.01.T01 | MTR_6g026890 | 40.625 | 64 | 38 | 0 | 14 | 77 | 20 | 83 | 9.71e-13 | 66.2 |
MsG0880046922.01.T01 | MTR_1g030630 | 45.902 | 61 | 33 | 0 | 14 | 74 | 29 | 89 | 1.87e-12 | 65.5 |
MsG0880046922.01.T01 | MTR_2g018790 | 32.283 | 127 | 77 | 3 | 8 | 125 | 6 | 132 | 2.79e-12 | 67.8 |
MsG0880046922.01.T01 | MTR_3g087770 | 47.761 | 67 | 35 | 0 | 8 | 74 | 28 | 94 | 2.81e-12 | 65.1 |
MsG0880046922.01.T01 | MTR_1g078090 | 38.356 | 73 | 45 | 0 | 7 | 79 | 50 | 122 | 3.97e-12 | 65.5 |
MsG0880046922.01.T01 | MTR_2g091235 | 42.254 | 71 | 41 | 0 | 14 | 84 | 6 | 76 | 5.84e-12 | 63.9 |
MsG0880046922.01.T01 | MTR_4g057765 | 48.276 | 87 | 43 | 2 | 12 | 96 | 68 | 154 | 7.51e-12 | 67.0 |
MsG0880046922.01.T01 | MTR_5g025150 | 37.179 | 78 | 49 | 0 | 3 | 80 | 16 | 93 | 1.53e-11 | 62.8 |
MsG0880046922.01.T01 | MTR_7g013660 | 37.037 | 81 | 51 | 0 | 13 | 93 | 7 | 87 | 1.60e-11 | 62.0 |
MsG0880046922.01.T01 | MTR_7g083060 | 33.654 | 104 | 62 | 3 | 2 | 98 | 16 | 119 | 2.02e-11 | 62.4 |
MsG0880046922.01.T01 | MTR_5g020960 | 41.176 | 68 | 40 | 0 | 9 | 76 | 2 | 69 | 8.83e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046922.01.T01 | AT3G06130 | 51.736 | 288 | 94 | 9 | 1 | 276 | 1 | 255 | 1.44e-46 | 165 |
MsG0880046922.01.T01 | AT3G06130 | 51.736 | 288 | 94 | 9 | 1 | 276 | 1 | 255 | 2.53e-45 | 165 |
MsG0880046922.01.T01 | AT5G19090 | 70.000 | 120 | 27 | 1 | 1 | 111 | 1 | 120 | 5.40e-43 | 160 |
MsG0880046922.01.T01 | AT5G19090 | 70.000 | 120 | 27 | 1 | 1 | 111 | 1 | 120 | 5.40e-43 | 160 |
MsG0880046922.01.T01 | AT5G19090 | 70.000 | 120 | 27 | 1 | 1 | 111 | 1 | 120 | 5.40e-43 | 160 |
MsG0880046922.01.T01 | AT3G05220 | 63.514 | 74 | 27 | 0 | 1 | 74 | 1 | 74 | 2.11e-26 | 113 |
MsG0880046922.01.T01 | AT5G27690 | 52.475 | 101 | 43 | 1 | 5 | 105 | 25 | 120 | 2.90e-26 | 110 |
MsG0880046922.01.T01 | AT1G23000 | 61.628 | 86 | 29 | 2 | 1 | 83 | 1 | 85 | 9.05e-26 | 108 |
MsG0880046922.01.T01 | AT1G23000 | 61.628 | 86 | 29 | 2 | 1 | 83 | 61 | 145 | 2.46e-25 | 108 |
MsG0880046922.01.T01 | AT5G37860 | 54.412 | 68 | 31 | 0 | 9 | 76 | 9 | 76 | 3.22e-19 | 87.8 |
MsG0880046922.01.T01 | AT1G56210 | 54.667 | 75 | 33 | 1 | 10 | 83 | 40 | 114 | 1.53e-18 | 87.4 |
MsG0880046922.01.T01 | AT1G06330 | 46.875 | 64 | 34 | 0 | 14 | 77 | 6 | 69 | 3.65e-13 | 67.4 |
MsG0880046922.01.T01 | AT3G56891 | 43.750 | 64 | 36 | 0 | 14 | 77 | 20 | 83 | 7.78e-13 | 67.0 |
MsG0880046922.01.T01 | AT1G66240 | 40.000 | 65 | 39 | 0 | 10 | 74 | 33 | 97 | 4.62e-12 | 63.2 |
MsG0880046922.01.T01 | AT4G10465 | 36.957 | 92 | 58 | 0 | 1 | 92 | 42 | 133 | 5.33e-12 | 65.1 |
MsG0880046922.01.T01 | AT3G02960 | 41.892 | 74 | 42 | 1 | 3 | 75 | 119 | 192 | 2.62e-11 | 64.3 |
MsG0880046922.01.T01 | AT4G23882 | 43.678 | 87 | 38 | 3 | 9 | 84 | 77 | 163 | 2.99e-11 | 64.7 |
MsG0880046922.01.T01 | AT3G56240 | 41.791 | 67 | 39 | 0 | 10 | 76 | 3 | 69 | 5.36e-11 | 60.5 |
MsG0880046922.01.T01 | AT3G56240 | 41.791 | 67 | 39 | 0 | 10 | 76 | 3 | 69 | 5.36e-11 | 60.5 |
MsG0880046922.01.T01 | AT1G71050 | 39.394 | 66 | 40 | 0 | 9 | 74 | 27 | 92 | 6.87e-11 | 60.8 |
Find 169 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGGGAAGGTCACAGTTTC+AGG | 0.145406 | 8:-79960929 | MsG0880046922.01.T01:CDS |
CAAGATCTAGCTCAATTTAA+AGG | 0.182916 | 8:-79960578 | MsG0880046922.01.T01:CDS |
TAGGATTCTGATTCGGGTTC+TGG | 0.245506 | 8:+79960525 | None:intergenic |
GGATTCCCCTGCATCATTTC+CGG | 0.253390 | 8:+79959752 | None:intergenic |
AAGAGGCAAGTTTGAGAGTT+AGG | 0.278652 | 8:+79961576 | None:intergenic |
ACAACAACAGCAACAGTTAA+TGG | 0.289999 | 8:-79959705 | MsG0880046922.01.T01:CDS |
TATTGTTTCCACCACCCTTC+TGG | 0.290425 | 8:+79960711 | None:intergenic |
CATCTTTAGGATTCTGATTC+GGG | 0.295568 | 8:+79960519 | None:intergenic |
TTGTATTTGTTGACCACCTT+TGG | 0.297173 | 8:+79960682 | None:intergenic |
ATCAAGAAGCTTGCAAAATC+AGG | 0.297726 | 8:-79960884 | MsG0880046922.01.T01:CDS |
TTAACACCTTTAGCATCTTT+AGG | 0.299936 | 8:+79960506 | None:intergenic |
CCCTGCATCATTTCCGGTCC+TGG | 0.305122 | 8:+79959758 | None:intergenic |
AGCTTCTTGATGAGAACATT+TGG | 0.309355 | 8:+79960896 | None:intergenic |
TCAATCTCATCCTGGTAGTA+TGG | 0.312405 | 8:-79959903 | MsG0880046922.01.T01:CDS |
GTTACTTACTTTATTCCTAT+TGG | 0.313104 | 8:-79961385 | MsG0880046922.01.T01:five_prime_UTR |
CCATTCCCCATAGGCATAGA+AGG | 0.318053 | 8:+79960344 | None:intergenic |
CTTCTTTACTCATGACCAAT+AGG | 0.330043 | 8:+79961370 | None:intergenic |
TAAGGATCTGGAGGAGGATA+AGG | 0.339463 | 8:+79959569 | None:intergenic |
GCATCTTTAGGATTCTGATT+CGG | 0.340947 | 8:+79960518 | None:intergenic |
TCTGATTCGGGTTCTGGCCC+GGG | 0.343572 | 8:+79960531 | None:intergenic |
ACTGATTAACAACGTTGTTC+TGG | 0.344905 | 8:+79960807 | None:intergenic |
GGTGATTATAGATCTGAAAA+TGG | 0.348415 | 8:+79961444 | None:intergenic |
GGCGGAGGTGGAGGCGGTGG+TGG | 0.350490 | 8:-79959983 | MsG0880046922.01.T01:CDS |
GAGAGTTAGGAGAGAGAGAA+TGG | 0.355103 | 8:+79961589 | None:intergenic |
TTCTGATTCGGGTTCTGGCC+CGG | 0.355308 | 8:+79960530 | None:intergenic |
GGGTGGTGGAGGAAATAATA+TGG | 0.357181 | 8:-79959882 | MsG0880046922.01.T01:CDS |
TTACCACCCATTCGGTTCAT+AGG | 0.360924 | 8:+79959845 | None:intergenic |
CTAAAATCATCCTCATCTTC+AGG | 0.371343 | 8:+79960473 | None:intergenic |
GGTGGCGGAGGTGGAGGCGG+TGG | 0.373427 | 8:-79959986 | MsG0880046922.01.T01:CDS |
TGAAATGAAATGAGAATAGA+AGG | 0.374304 | 8:+79961512 | None:intergenic |
AAGGAAAAGAGAGAAATAAA+TGG | 0.382972 | 8:+79961531 | None:intergenic |
TACTTTCAAGGTGGTGGTGG+TGG | 0.384334 | 8:-79959782 | MsG0880046922.01.T01:CDS |
TAGTAGTCACTGAGAGAGAA+TGG | 0.385371 | 8:+79961619 | None:intergenic |
AAGAAAGGTGGTGGTGGTGG+TGG | 0.386759 | 8:-79960155 | MsG0880046922.01.T01:CDS |
AATGGTGGTGGTGGCGGAAA+TGG | 0.397465 | 8:-79960257 | MsG0880046922.01.T01:CDS |
CAGGGAAACATGCCGAGTTA+TGG | 0.402581 | 8:-79960865 | MsG0880046922.01.T01:CDS |
ACTTGTGATAAATAAAGATC+TGG | 0.404190 | 8:+79961406 | None:intergenic |
CCAATTGGTGGCGGAGGTGG+AGG | 0.411942 | 8:-79959992 | MsG0880046922.01.T01:CDS |
TGTATTTGTTGACCACCTTT+GGG | 0.413549 | 8:+79960683 | None:intergenic |
CAGAAACCTGGTGGTGGTGG+TGG | 0.418442 | 8:-79960233 | MsG0880046922.01.T01:CDS |
AATGTTCAGGCTATGAATAA+TGG | 0.423799 | 8:-79959959 | MsG0880046922.01.T01:CDS |
GCTTCTTGATGAGAACATTT+GGG | 0.423822 | 8:+79960897 | None:intergenic |
CACGGCATGAATGGTGGAAA+TGG | 0.424726 | 8:-79960188 | MsG0880046922.01.T01:CDS |
AAAATCTTACAGAAAATTGA+TGG | 0.430085 | 8:-79961138 | MsG0880046922.01.T01:intron |
ATGATGGGTGGTGGAGGTGG+TGG | 0.432564 | 8:-79959926 | MsG0880046922.01.T01:CDS |
AAAATGATGGGTGGTGGAGG+TGG | 0.436665 | 8:-79959929 | MsG0880046922.01.T01:CDS |
GGTAACATTCCTGCTGTTCA+AGG | 0.436866 | 8:-79959827 | MsG0880046922.01.T01:CDS |
AGGCGGTGGTGGTAATGTTC+AGG | 0.438058 | 8:-79959972 | MsG0880046922.01.T01:CDS |
GGTTACTTTCAAGGTGGTGG+TGG | 0.439749 | 8:-79959785 | MsG0880046922.01.T01:CDS |
CCTCCACCTCCGCCACCAAT+TGG | 0.440018 | 8:+79959992 | None:intergenic |
TTCATGCCGTGAATTTGAAC+CGG | 0.440785 | 8:+79960200 | None:intergenic |
GGAAAGAAAGGTGGTGGTGG+TGG | 0.445640 | 8:-79960158 | MsG0880046922.01.T01:CDS |
ATTGGTGGCGGAGGTGGAGG+CGG | 0.453929 | 8:-79959989 | MsG0880046922.01.T01:CDS |
ATACCAATTGGTGGCGGAGG+TGG | 0.457299 | 8:-79959995 | MsG0880046922.01.T01:CDS |
CCTTCTATGCCTATGGGGAA+TGG | 0.458052 | 8:-79960344 | MsG0880046922.01.T01:CDS |
TGATGAGTTTGATGATGAAA+TGG | 0.461887 | 8:-79960396 | MsG0880046922.01.T01:CDS |
AACAACTTCAACAGATGAAA+GGG | 0.462139 | 8:-79960604 | MsG0880046922.01.T01:CDS |
CGGTTCATAGGCATACTCAT+TGG | 0.463995 | 8:+79959857 | None:intergenic |
ACAGCTTATGAGTGCTATGA+AGG | 0.465021 | 8:-79960291 | MsG0880046922.01.T01:CDS |
AAGGATCTGGAGGAGGATAA+GGG | 0.466318 | 8:+79959570 | None:intergenic |
GGTCTACCGGCAGGCGGAGG+AGG | 0.468185 | 8:-79959806 | MsG0880046922.01.T01:CDS |
AAAGCATGTGAGTAAGGATC+TGG | 0.469198 | 8:+79959557 | None:intergenic |
TGGTGGTGGTGGTCCAGGAC+CGG | 0.469917 | 8:-79959771 | MsG0880046922.01.T01:CDS |
AAGAGTCTCTGAAACATAAG+AGG | 0.472199 | 8:+79961559 | None:intergenic |
TCCAGGACCGGAAATGATGC+AGG | 0.480211 | 8:-79959759 | MsG0880046922.01.T01:CDS |
GGCGGAGGAGGTTACTTTCA+AGG | 0.482444 | 8:-79959794 | MsG0880046922.01.T01:CDS |
ATTGACAATGGCAAAGGTGG+TGG | 0.482824 | 8:-79960770 | MsG0880046922.01.T01:CDS |
AGTAGTCACTGAGAGAGAAT+GGG | 0.484635 | 8:+79961620 | None:intergenic |
CAATCTCATCCTGGTAGTAT+GGG | 0.490190 | 8:-79959902 | MsG0880046922.01.T01:CDS |
TGGTGGTGGAGGACCTGTGC+CGG | 0.493420 | 8:-79960219 | MsG0880046922.01.T01:CDS |
TCGCTGAAAGCATGTGAGTA+AGG | 0.494235 | 8:+79959551 | None:intergenic |
GAAGGTATGTCGATACCAAT+TGG | 0.495826 | 8:-79960007 | MsG0880046922.01.T01:CDS |
TCCTGCTGTTCAAGGTCTAC+CGG | 0.501026 | 8:-79959819 | MsG0880046922.01.T01:CDS |
GTTAGGAGAGAGAGAATGGT+GGG | 0.502449 | 8:+79961593 | None:intergenic |
GCCGGTAGACCTTGAACAGC+AGG | 0.503563 | 8:+79959818 | None:intergenic |
GGTGGCCTTGCATACATCAT+TGG | 0.504586 | 8:+79959623 | None:intergenic |
TCTGGAGGAGGATAAGGGTA+AGG | 0.506412 | 8:+79959575 | None:intergenic |
CATCCTGGTAGTATGGGTGG+TGG | 0.513520 | 8:-79959896 | MsG0880046922.01.T01:CDS |
GTTCAAATTCACGGCATGAA+TGG | 0.514493 | 8:-79960197 | MsG0880046922.01.T01:CDS |
CCGTGAATTTGAACCGGCAC+AGG | 0.516132 | 8:+79960206 | None:intergenic |
GGAGGTTACTTTCAAGGTGG+TGG | 0.516276 | 8:-79959788 | MsG0880046922.01.T01:CDS |
GGTGGTGGAGGAAATAATAT+GGG | 0.517548 | 8:-79959881 | MsG0880046922.01.T01:CDS |
AAGTAACCTCCTCCGCCTGC+CGG | 0.520732 | 8:+79959800 | None:intergenic |
CAGAATCCTAAAGATGCTAA+AGG | 0.521196 | 8:-79960512 | MsG0880046922.01.T01:CDS |
AATCAAAACCAGAAGGGTGG+TGG | 0.522342 | 8:-79960719 | MsG0880046922.01.T01:CDS |
GGAGGAAAGAAAGGTGGTGG+TGG | 0.522847 | 8:-79960161 | MsG0880046922.01.T01:CDS |
CAGGAATGTTACCACCCATT+CGG | 0.525275 | 8:+79959837 | None:intergenic |
GGTGCTCACATGATGTTGAA+TGG | 0.526053 | 8:-79960323 | MsG0880046922.01.T01:CDS |
CAACAACTTCAACAGATGAA+AGG | 0.526664 | 8:-79960605 | MsG0880046922.01.T01:CDS |
CAAGGTCTACCGGCAGGCGG+AGG | 0.530336 | 8:-79959809 | MsG0880046922.01.T01:CDS |
ATGTAATTCACCTCAGGAGG+TGG | 0.534211 | 8:+79959605 | None:intergenic |
AATGGCAATGGAGGAAAGAA+AGG | 0.535264 | 8:-79960170 | MsG0880046922.01.T01:CDS |
CCTGGTAGTATGGGTGGTGG+AGG | 0.540462 | 8:-79959893 | MsG0880046922.01.T01:CDS |
GTGCTCACATGATGTTGAAT+GGG | 0.541270 | 8:-79960322 | MsG0880046922.01.T01:CDS |
TCATTGGCTGCTGAAATCTC+TGG | 0.541514 | 8:+79959639 | None:intergenic |
GCTGTTCAAGGTCTACCGGC+AGG | 0.542942 | 8:-79959815 | MsG0880046922.01.T01:CDS |
GGACAGAAACCTGGTGGTGG+TGG | 0.543498 | 8:-79960236 | MsG0880046922.01.T01:CDS |
CCTGTGCCGGTTCAAATTCA+CGG | 0.544320 | 8:-79960206 | MsG0880046922.01.T01:CDS |
GAATCACATGACATTGCAGC+TGG | 0.546046 | 8:+79959517 | None:intergenic |
GGAGGAGGATAAGGGTAAGG+AGG | 0.547967 | 8:+79959578 | None:intergenic |
CTTGTGATAAATAAAGATCT+GGG | 0.548351 | 8:+79961407 | None:intergenic |
CCTCCACCACCCATACTACC+AGG | 0.550212 | 8:+79959893 | None:intergenic |
TCAAGAAGCTTGCAAAATCA+GGG | 0.551852 | 8:-79960883 | MsG0880046922.01.T01:CDS |
GGCGGAAATGGACAGAAACC+TGG | 0.552019 | 8:-79960245 | MsG0880046922.01.T01:CDS |
AGTTAGGAGAGAGAGAATGG+TGG | 0.552241 | 8:+79961592 | None:intergenic |
TCGATACCAATTGGTGGCGG+AGG | 0.554646 | 8:-79959998 | MsG0880046922.01.T01:CDS |
GATGCCGCTGAATCAGCACC+CGG | 0.559535 | 8:-79960549 | MsG0880046922.01.T01:CDS |
GGTGGTGGTCAATCTCATCC+TGG | 0.561328 | 8:-79959911 | MsG0880046922.01.T01:CDS |
GATGAATCAACGTGCTGCTA+TGG | 0.564311 | 8:-79959672 | MsG0880046922.01.T01:CDS |
CAAATTCACGGCATGAATGG+TGG | 0.565701 | 8:-79960194 | MsG0880046922.01.T01:CDS |
GGAGGGAATAATCAGAATCA+AGG | 0.567228 | 8:-79960134 | MsG0880046922.01.T01:CDS |
TGAAGTTGTTGCTGCTGCTG+AGG | 0.567794 | 8:+79960644 | None:intergenic |
GGATACATGTAATTCACCTC+AGG | 0.568572 | 8:+79959599 | None:intergenic |
CATTCCCCATAGGCATAGAA+GGG | 0.572536 | 8:+79960345 | None:intergenic |
GAATCAACGTGCTGCTATGG+TGG | 0.576359 | 8:-79959669 | MsG0880046922.01.T01:CDS |
TTTGTTGACCACCTTTGGGT+TGG | 0.576873 | 8:+79960687 | None:intergenic |
ATGAATGGTGGAAATGGCAA+TGG | 0.579729 | 8:-79960182 | MsG0880046922.01.T01:CDS |
GAGTTTGATGATGAAATGGT+TGG | 0.582338 | 8:-79960392 | MsG0880046922.01.T01:CDS |
GGTCACAGTTTCAGGGAATG+TGG | 0.584262 | 8:-79960921 | MsG0880046922.01.T01:CDS |
AGCAGCCAATGATGTATGCA+AGG | 0.586173 | 8:-79959628 | MsG0880046922.01.T01:CDS |
AAGGGAAGGTCACAGTTTCA+GGG | 0.589814 | 8:-79960928 | MsG0880046922.01.T01:CDS |
AAATCAGAATCAAAACCAGA+AGG | 0.592384 | 8:-79960726 | MsG0880046922.01.T01:CDS |
TGGCCCGGGTGCTGATTCAG+CGG | 0.593907 | 8:+79960545 | None:intergenic |
GGTCCTCCACCACCACCACC+AGG | 0.597489 | 8:+79960227 | None:intergenic |
TTTGGGAACACTCCATAACT+CGG | 0.598490 | 8:+79960853 | None:intergenic |
ATTTGATGTGCCTGAAGATG+AGG | 0.599659 | 8:-79960483 | MsG0880046922.01.T01:CDS |
GGCAATGGAGGAAAGAAAGG+TGG | 0.603629 | 8:-79960167 | MsG0880046922.01.T01:CDS |
AATCAGAATCAAAACCAGAA+GGG | 0.603694 | 8:-79960725 | MsG0880046922.01.T01:CDS |
TGTGAGTAAGGATCTGGAGG+AGG | 0.603879 | 8:+79959563 | None:intergenic |
AACAATAACCAACCCAAAGG+TGG | 0.605261 | 8:-79960695 | MsG0880046922.01.T01:CDS |
AATAATCAGAATCAAGGTGG+AGG | 0.605707 | 8:-79960128 | MsG0880046922.01.T01:intron |
AATGGAGGAAAGAAAGGTGG+TGG | 0.606743 | 8:-79960164 | MsG0880046922.01.T01:CDS |
CAAATTGACAATGGCAAAGG+TGG | 0.610618 | 8:-79960773 | MsG0880046922.01.T01:CDS |
TTCATAGCACTCATAAGCTG+TGG | 0.610940 | 8:+79960293 | None:intergenic |
ATGCAAATTGACAATGGCAA+AGG | 0.611165 | 8:-79960776 | MsG0880046922.01.T01:CDS |
TCTCATCCTGGTAGTATGGG+TGG | 0.611507 | 8:-79959899 | MsG0880046922.01.T01:CDS |
AAAGTGAACATACACTGTGA+TGG | 0.617847 | 8:-79961180 | MsG0880046922.01.T01:CDS |
CCAGGACCGGAAATGATGCA+GGG | 0.618163 | 8:-79959758 | MsG0880046922.01.T01:CDS |
ATGTGAGCACCATTCCCCAT+AGG | 0.619841 | 8:+79960335 | None:intergenic |
ACTGAGATAGATGCAGAACA+AGG | 0.622005 | 8:-79960947 | MsG0880046922.01.T01:CDS |
AGTATGCCTATGAACCGAAT+GGG | 0.622246 | 8:-79959851 | MsG0880046922.01.T01:CDS |
AAGAACATGCAAATTGACAA+TGG | 0.628311 | 8:-79960782 | MsG0880046922.01.T01:CDS |
GGTCAACAAATACAAATACA+AGG | 0.629935 | 8:-79960674 | MsG0880046922.01.T01:CDS |
ATGCCGCTGAATCAGCACCC+GGG | 0.631365 | 8:-79960548 | MsG0880046922.01.T01:CDS |
GTTCAAGGTCTACCGGCAGG+CGG | 0.633909 | 8:-79959812 | MsG0880046922.01.T01:CDS |
GCATGTGAGTAAGGATCTGG+AGG | 0.633919 | 8:+79959560 | None:intergenic |
GTAGTCACTGAGAGAGAATG+GGG | 0.633943 | 8:+79961621 | None:intergenic |
ATGTCGATACCAATTGGTGG+CGG | 0.637455 | 8:-79960001 | MsG0880046922.01.T01:CDS |
CTTATGAGTGCTATGAAGGG+TGG | 0.638762 | 8:-79960287 | MsG0880046922.01.T01:CDS |
TACATGTAATTCACCTCAGG+AGG | 0.640426 | 8:+79959602 | None:intergenic |
GATAGATGCAGAACAAGGGA+AGG | 0.641999 | 8:-79960942 | MsG0880046922.01.T01:CDS |
CAGCTTATGAGTGCTATGAA+GGG | 0.642847 | 8:-79960290 | MsG0880046922.01.T01:CDS |
ATGCCTATGAACCGAATGGG+TGG | 0.650716 | 8:-79959848 | MsG0880046922.01.T01:CDS |
GAGTATGCCTATGAACCGAA+TGG | 0.653536 | 8:-79959852 | MsG0880046922.01.T01:CDS |
AATGGACAGAAACCTGGTGG+TGG | 0.653878 | 8:-79960239 | MsG0880046922.01.T01:CDS |
GGTATGTCGATACCAATTGG+TGG | 0.657192 | 8:-79960004 | MsG0880046922.01.T01:CDS |
CAGAATCAAAACCAGAAGGG+TGG | 0.662734 | 8:-79960722 | MsG0880046922.01.T01:CDS |
AATGGTGGAAATGGCAATGG+AGG | 0.665518 | 8:-79960179 | MsG0880046922.01.T01:CDS |
CTGAGATAGATGCAGAACAA+GGG | 0.666808 | 8:-79960946 | MsG0880046922.01.T01:CDS |
CAGGACCGGAAATGATGCAG+GGG | 0.670762 | 8:-79959757 | MsG0880046922.01.T01:CDS |
ATTCCCCATAGGCATAGAAG+GGG | 0.672578 | 8:+79960346 | None:intergenic |
AAAGGTGGTGGAAACAACAA+AGG | 0.677851 | 8:-79960758 | MsG0880046922.01.T01:CDS |
GGGAATAATCAGAATCAAGG+TGG | 0.678494 | 8:-79960131 | MsG0880046922.01.T01:CDS |
GGAAACAATAACCAACCCAA+AGG | 0.682874 | 8:-79960698 | MsG0880046922.01.T01:CDS |
GTATGCAAGGCCACCTCCTG+AGG | 0.686248 | 8:-79959615 | MsG0880046922.01.T01:CDS |
TTCCCCATAGGCATAGAAGG+GGG | 0.698362 | 8:+79960347 | None:intergenic |
GTGGTGGAGGAAATAATATG+GGG | 0.726893 | 8:-79959880 | MsG0880046922.01.T01:CDS |
GGAAATGGACAGAAACCTGG+TGG | 0.762212 | 8:-79960242 | MsG0880046922.01.T01:CDS |
GGAGGAGGTTACTTTCAAGG+TGG | 0.764262 | 8:-79959791 | MsG0880046922.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTATTTTGATTATTGTT+TGG | + | Chr8:79960324-79960343 | None:intergenic | 10.0% |
!! | AAAATCTTACAGAAAATTGA+TGG | - | Chr8:79960013-79960032 | MsG0880046922.01.T01:intron | 20.0% |
!! | GCAAAAAAAATAAAGAAAGA+TGG | + | Chr8:79959846-79959865 | None:intergenic | 20.0% |
!!! | AATGGATTTCAAAAAATGAT+GGG | - | Chr8:79961210-79961229 | MsG0880046922.01.T01:intron | 20.0% |
!!! | ATTTTGATTATTGTTTGGTT+TGG | + | Chr8:79960319-79960338 | None:intergenic | 20.0% |
!!! | TAATGGATTTCAAAAAATGA+TGG | - | Chr8:79961209-79961228 | MsG0880046922.01.T01:intron | 20.0% |
!!! | TTTTGATTATTGTTTGGTTT+GGG | + | Chr8:79960318-79960337 | None:intergenic | 20.0% |
! | AAGGAAAAGAGAGAAATAAA+TGG | + | Chr8:79959623-79959642 | None:intergenic | 25.0% |
! | ACTTGTGATAAATAAAGATC+TGG | + | Chr8:79959748-79959767 | None:intergenic | 25.0% |
! | CTTGTGATAAATAAAGATCT+GGG | + | Chr8:79959747-79959766 | None:intergenic | 25.0% |
! | GTAGTAATCAAAATAACGAT+GGG | - | Chr8:79961116-79961135 | MsG0880046922.01.T01:intron | 25.0% |
! | GTTACTTACTTTATTCCTAT+TGG | - | Chr8:79959766-79959785 | MsG0880046922.01.T01:CDS | 25.0% |
! | TAGTAATCAAAATAACGATG+GGG | - | Chr8:79961117-79961136 | MsG0880046922.01.T01:intron | 25.0% |
! | TGAAATGAAATGAGAATAGA+AGG | + | Chr8:79959642-79959661 | None:intergenic | 25.0% |
!! | CTTAAATTAAGCTTCTGTTT+TGG | + | Chr8:79960129-79960148 | None:intergenic | 25.0% |
!! | GAGTATTTTATGTTCTTGTT+TGG | + | Chr8:79959688-79959707 | None:intergenic | 25.0% |
!!! | AGAAGAATTTTTGAAGATAC+AGG | - | Chr8:79959799-79959818 | MsG0880046922.01.T01:CDS | 25.0% |
!!! | TGATTTTAGTGATGATGAAA+TGG | - | Chr8:79960692-79960711 | MsG0880046922.01.T01:CDS | 25.0% |
!!! | TTGTTTGGTTGAGTTTTATT+TGG | + | Chr8:79959673-79959692 | None:intergenic | 25.0% |
AAATCAGAATCAAAACCAGA+AGG | - | Chr8:79960425-79960444 | MsG0880046922.01.T01:CDS | 30.0% | |
AACAACTTCAACAGATGAAA+GGG | - | Chr8:79960547-79960566 | MsG0880046922.01.T01:CDS | 30.0% | |
AAGAACATGCAAATTGACAA+TGG | - | Chr8:79960369-79960388 | MsG0880046922.01.T01:CDS | 30.0% | |
AATCAGAATCAAAACCAGAA+GGG | - | Chr8:79960426-79960445 | MsG0880046922.01.T01:CDS | 30.0% | |
AATGTTCAGGCTATGAATAA+TGG | - | Chr8:79961192-79961211 | MsG0880046922.01.T01:CDS | 30.0% | |
AGTAATCAAAATAACGATGG+GGG | - | Chr8:79961118-79961137 | MsG0880046922.01.T01:intron | 30.0% | |
ATGCCAGAAGCTAAAAATAA+TGG | - | Chr8:79961064-79961083 | MsG0880046922.01.T01:intron | 30.0% | |
GGTAGTAATCAAAATAACGA+TGG | - | Chr8:79961115-79961134 | MsG0880046922.01.T01:intron | 30.0% | |
GGTCAACAAATACAAATACA+AGG | - | Chr8:79960477-79960496 | MsG0880046922.01.T01:CDS | 30.0% | |
GGTGATTATAGATCTGAAAA+TGG | + | Chr8:79959710-79959729 | None:intergenic | 30.0% | |
TTAACACCTTTAGCATCTTT+AGG | + | Chr8:79960648-79960667 | None:intergenic | 30.0% | |
TTCTGCATACACAAATAACA+AGG | + | Chr8:79959941-79959960 | None:intergenic | 30.0% | |
! | CAAGATCTAGCTCAATTTAA+AGG | - | Chr8:79960573-79960592 | MsG0880046922.01.T01:CDS | 30.0% |
!! | TGATGAGTTTGATGATGAAA+TGG | - | Chr8:79960755-79960774 | MsG0880046922.01.T01:CDS | 30.0% |
!! | TGTGTTGATTAATGAATGAC+AGG | - | Chr8:79960171-79960190 | MsG0880046922.01.T01:CDS | 30.0% |
AAAGTGAACATACACTGTGA+TGG | - | Chr8:79959971-79959990 | MsG0880046922.01.T01:CDS | 35.0% | |
AACAAGAATGGAGGGAATAA+TGG | - | Chr8:79961094-79961113 | MsG0880046922.01.T01:intron | 35.0% | |
AAGAAAGATGGAGAATGTGA+TGG | + | Chr8:79959834-79959853 | None:intergenic | 35.0% | |
AATAATCAGAATCAAGGTGG+AGG | - | Chr8:79961023-79961042 | MsG0880046922.01.T01:intron | 35.0% | |
ACAACAACAGCAACAGTTAA+TGG | - | Chr8:79961446-79961465 | MsG0880046922.01.T01:five_prime_UTR | 35.0% | |
ACTGATTAACAACGTTGTTC+TGG | + | Chr8:79960347-79960366 | None:intergenic | 35.0% | |
AGAAAGATGGAGAATGTGAT+GGG | + | Chr8:79959833-79959852 | None:intergenic | 35.0% | |
AGCTTCTTGATGAGAACATT+TGG | + | Chr8:79960258-79960277 | None:intergenic | 35.0% | |
AGGTGGAGGTAACAAAATAA+TGG | - | Chr8:79961037-79961056 | MsG0880046922.01.T01:intron | 35.0% | |
ATCAAGAAGCTTGCAAAATC+AGG | - | Chr8:79960267-79960286 | MsG0880046922.01.T01:CDS | 35.0% | |
ATCTGGGCTATAGAGAAAAA+TGG | + | Chr8:79959731-79959750 | None:intergenic | 35.0% | |
ATGCAAATTGACAATGGCAA+AGG | - | Chr8:79960375-79960394 | MsG0880046922.01.T01:CDS | 35.0% | |
CAACAACTTCAACAGATGAA+AGG | - | Chr8:79960546-79960565 | MsG0880046922.01.T01:CDS | 35.0% | |
CAGAATCCTAAAGATGCTAA+AGG | - | Chr8:79960639-79960658 | MsG0880046922.01.T01:CDS | 35.0% | |
CCAGAAGCTAAAAATAATGG+CGG | - | Chr8:79961067-79961086 | MsG0880046922.01.T01:intron | 35.0% | |
CTAAAATCATCCTCATCTTC+AGG | + | Chr8:79960681-79960700 | None:intergenic | 35.0% | |
CTTCTTTACTCATGACCAAT+AGG | + | Chr8:79959784-79959803 | None:intergenic | 35.0% | |
GCTTCTTGATGAGAACATTT+GGG | + | Chr8:79960257-79960276 | None:intergenic | 35.0% | |
TCAAGAAGCTTGCAAAATCA+GGG | - | Chr8:79960268-79960287 | MsG0880046922.01.T01:CDS | 35.0% | |
TGGAGGTAACAAAATAATGG+TGG | - | Chr8:79961040-79961059 | MsG0880046922.01.T01:intron | 35.0% | |
! | ATGAAGGGTGGCAATTTTAA+TGG | - | Chr8:79960876-79960895 | MsG0880046922.01.T01:CDS | 35.0% |
! | GGATTTCAAAAAATGATGGG+TGG | - | Chr8:79961213-79961232 | MsG0880046922.01.T01:intron | 35.0% |
! | TGTATTTGTTGACCACCTTT+GGG | + | Chr8:79960471-79960490 | None:intergenic | 35.0% |
! | TTGTATTTGTTGACCACCTT+TGG | + | Chr8:79960472-79960491 | None:intergenic | 35.0% |
!! | AAGAGTCTCTGAAACATAAG+AGG | + | Chr8:79959595-79959614 | None:intergenic | 35.0% |
!! | CATCTTTAGGATTCTGATTC+GGG | + | Chr8:79960635-79960654 | None:intergenic | 35.0% |
!! | GAGTTTGATGATGAAATGGT+TGG | - | Chr8:79960759-79960778 | MsG0880046922.01.T01:CDS | 35.0% |
!! | GCATCTTTAGGATTCTGATT+CGG | + | Chr8:79960636-79960655 | None:intergenic | 35.0% |
!! | TTTCAAAAAATGATGGGTGG+TGG | - | Chr8:79961216-79961235 | MsG0880046922.01.T01:intron | 35.0% |
AAAGCATGTGAGTAAGGATC+TGG | + | Chr8:79961597-79961616 | None:intergenic | 40.0% | |
AAATAACGATGGGGGTAAGA+AGG | - | Chr8:79961126-79961145 | MsG0880046922.01.T01:intron | 40.0% | |
AACAATAACCAACCCAAAGG+TGG | - | Chr8:79960456-79960475 | MsG0880046922.01.T01:CDS | 40.0% | |
AAGAGGCAAGTTTGAGAGTT+AGG | + | Chr8:79959578-79959597 | None:intergenic | 40.0% | |
AATGGCAATGGAGGAAAGAA+AGG | - | Chr8:79960981-79961000 | MsG0880046922.01.T01:intron | 40.0% | |
ACAGCTTATGAGTGCTATGA+AGG | - | Chr8:79960860-79960879 | MsG0880046922.01.T01:CDS | 40.0% | |
ACTGAGATAGATGCAGAACA+AGG | - | Chr8:79960204-79960223 | MsG0880046922.01.T01:CDS | 40.0% | |
AGTAGTCACTGAGAGAGAAT+GGG | + | Chr8:79959534-79959553 | None:intergenic | 40.0% | |
AGTATGCCTATGAACCGAAT+GGG | - | Chr8:79961300-79961319 | MsG0880046922.01.T01:intron | 40.0% | |
ATTTGATGTGCCTGAAGATG+AGG | - | Chr8:79960668-79960687 | MsG0880046922.01.T01:CDS | 40.0% | |
CAAATTGACAATGGCAAAGG+TGG | - | Chr8:79960378-79960397 | MsG0880046922.01.T01:CDS | 40.0% | |
CAATCTCATCCTGGTAGTAT+GGG | - | Chr8:79961249-79961268 | MsG0880046922.01.T01:intron | 40.0% | |
CAGCTTATGAGTGCTATGAA+GGG | - | Chr8:79960861-79960880 | MsG0880046922.01.T01:CDS | 40.0% | |
CTGAGATAGATGCAGAACAA+GGG | - | Chr8:79960205-79960224 | MsG0880046922.01.T01:CDS | 40.0% | |
GAAGCTAAAAATAATGGCGG+TGG | - | Chr8:79961070-79961089 | MsG0880046922.01.T01:intron | 40.0% | |
GAAGGGGGTTTCATCTTATT+AGG | + | Chr8:79960792-79960811 | None:intergenic | 40.0% | |
GGAAACAATAACCAACCCAA+AGG | - | Chr8:79960453-79960472 | MsG0880046922.01.T01:CDS | 40.0% | |
GGAGGGAATAATCAGAATCA+AGG | - | Chr8:79961017-79961036 | MsG0880046922.01.T01:intron | 40.0% | |
GGATACATGTAATTCACCTC+AGG | + | Chr8:79961555-79961574 | None:intergenic | 40.0% | |
GGGAATAATCAGAATCAAGG+TGG | - | Chr8:79961020-79961039 | MsG0880046922.01.T01:intron | 40.0% | |
GTGCTCACATGATGTTGAAT+GGG | - | Chr8:79960829-79960848 | MsG0880046922.01.T01:CDS | 40.0% | |
GTTCAAATTCACGGCATGAA+TGG | - | Chr8:79960954-79960973 | MsG0880046922.01.T01:CDS | 40.0% | |
TACATGTAATTCACCTCAGG+AGG | + | Chr8:79961552-79961571 | None:intergenic | 40.0% | |
TAGTAGTCACTGAGAGAGAA+TGG | + | Chr8:79959535-79959554 | None:intergenic | 40.0% | |
TCAATCTCATCCTGGTAGTA+TGG | - | Chr8:79961248-79961267 | MsG0880046922.01.T01:intron | 40.0% | |
TTCATAGCACTCATAAGCTG+TGG | + | Chr8:79960861-79960880 | None:intergenic | 40.0% | |
TTCATGCCGTGAATTTGAAC+CGG | + | Chr8:79960954-79960973 | None:intergenic | 40.0% | |
TTTGGGAACACTCCATAACT+CGG | + | Chr8:79960301-79960320 | None:intergenic | 40.0% | |
! | ATGAATGGTGGAAATGGCAA+TGG | - | Chr8:79960969-79960988 | MsG0880046922.01.T01:intron | 40.0% |
! | GAAGGTATGTCGATACCAAT+TGG | - | Chr8:79961144-79961163 | MsG0880046922.01.T01:CDS | 40.0% |
! | GTGGTGGAGGAAATAATATG+GGG | - | Chr8:79961271-79961290 | MsG0880046922.01.T01:intron | 40.0% |
!! | AAAGGTGGTGGAAACAACAA+AGG | - | Chr8:79960393-79960412 | MsG0880046922.01.T01:CDS | 40.0% |
!! | AAGGGTGGCAATTTTAATGG+TGG | - | Chr8:79960879-79960898 | MsG0880046922.01.T01:CDS | 40.0% |
!! | GGTGGTGGAGGAAATAATAT+GGG | - | Chr8:79961270-79961289 | MsG0880046922.01.T01:intron | 40.0% |
!!! | AATTTTAATGGTGGTGGTGG+CGG | - | Chr8:79960888-79960907 | MsG0880046922.01.T01:CDS | 40.0% |
!!! | CCGCCATTATTTTTAGCTTC+TGG | + | Chr8:79961070-79961089 | None:intergenic | 40.0% |
AAACCCCCTTCTATGCCTAT+GGG | - | Chr8:79960801-79960820 | MsG0880046922.01.T01:CDS | 45.0% | |
AAGGATCTGGAGGAGGATAA+GGG | + | Chr8:79961584-79961603 | None:intergenic | 45.0% | |
AAGGGAAGGTCACAGTTTCA+GGG | - | Chr8:79960223-79960242 | MsG0880046922.01.T01:CDS | 45.0% | |
AATCAAAACCAGAAGGGTGG+TGG | - | Chr8:79960432-79960451 | MsG0880046922.01.T01:CDS | 45.0% | |
AATGGAGGAAAGAAAGGTGG+TGG | - | Chr8:79960987-79961006 | MsG0880046922.01.T01:intron | 45.0% | |
AATGGCGGTGGAAACAAGAA+TGG | - | Chr8:79961082-79961101 | MsG0880046922.01.T01:intron | 45.0% | |
AGCAGCCAATGATGTATGCA+AGG | - | Chr8:79961523-79961542 | MsG0880046922.01.T01:five_prime_UTR | 45.0% | |
AGTTAGGAGAGAGAGAATGG+TGG | + | Chr8:79959562-79959581 | None:intergenic | 45.0% | |
ATGTAATTCACCTCAGGAGG+TGG | + | Chr8:79961549-79961568 | None:intergenic | 45.0% | |
ATGTCGATACCAATTGGTGG+CGG | - | Chr8:79961150-79961169 | MsG0880046922.01.T01:CDS | 45.0% | |
ATTCCCCATAGGCATAGAAG+GGG | + | Chr8:79960808-79960827 | None:intergenic | 45.0% | |
ATTGACAATGGCAAAGGTGG+TGG | - | Chr8:79960381-79960400 | MsG0880046922.01.T01:CDS | 45.0% | |
CAAATTCACGGCATGAATGG+TGG | - | Chr8:79960957-79960976 | MsG0880046922.01.T01:CDS | 45.0% | |
CAGAATCAAAACCAGAAGGG+TGG | - | Chr8:79960429-79960448 | MsG0880046922.01.T01:CDS | 45.0% | |
CAGGAATGTTACCACCCATT+CGG | + | Chr8:79961317-79961336 | None:intergenic | 45.0% | |
CATTCCCCATAGGCATAGAA+GGG | + | Chr8:79960809-79960828 | None:intergenic | 45.0% | |
CGGTTCATAGGCATACTCAT+TGG | + | Chr8:79961297-79961316 | None:intergenic | 45.0% | |
CTTATGAGTGCTATGAAGGG+TGG | - | Chr8:79960864-79960883 | MsG0880046922.01.T01:CDS | 45.0% | |
GAGAGTTAGGAGAGAGAGAA+TGG | + | Chr8:79959565-79959584 | None:intergenic | 45.0% | |
GAGTATGCCTATGAACCGAA+TGG | - | Chr8:79961299-79961318 | MsG0880046922.01.T01:intron | 45.0% | |
GATAGATGCAGAACAAGGGA+AGG | - | Chr8:79960209-79960228 | MsG0880046922.01.T01:CDS | 45.0% | |
GGGGGTTTCATCTTATTAGG+TGG | + | Chr8:79960789-79960808 | None:intergenic | 45.0% | |
GGTAACATTCCTGCTGTTCA+AGG | - | Chr8:79961324-79961343 | MsG0880046922.01.T01:intron | 45.0% | |
GGTATGTCGATACCAATTGG+TGG | - | Chr8:79961147-79961166 | MsG0880046922.01.T01:CDS | 45.0% | |
GGTGCTCACATGATGTTGAA+TGG | - | Chr8:79960828-79960847 | MsG0880046922.01.T01:CDS | 45.0% | |
GTAGTCACTGAGAGAGAATG+GGG | + | Chr8:79959533-79959552 | None:intergenic | 45.0% | |
GTTAGGAGAGAGAGAATGGT+GGG | + | Chr8:79959561-79959580 | None:intergenic | 45.0% | |
TAAGGATCTGGAGGAGGATA+AGG | + | Chr8:79961585-79961604 | None:intergenic | 45.0% | |
TATTGTTTCCACCACCCTTC+TGG | + | Chr8:79960443-79960462 | None:intergenic | 45.0% | |
TTACCACCCATTCGGTTCAT+AGG | + | Chr8:79961309-79961328 | None:intergenic | 45.0% | |
TTTGTTGACCACCTTTGGGT+TGG | + | Chr8:79960467-79960486 | None:intergenic | 45.0% | |
! | AATGGTGGAAATGGCAATGG+AGG | - | Chr8:79960972-79960991 | MsG0880046922.01.T01:intron | 45.0% |
! | GATGAATCAACGTGCTGCTA+TGG | - | Chr8:79961479-79961498 | MsG0880046922.01.T01:five_prime_UTR | 45.0% |
! | TCATTGGCTGCTGAAATCTC+TGG | + | Chr8:79961515-79961534 | None:intergenic | 45.0% |
! | TCGCTGAAAGCATGTGAGTA+AGG | + | Chr8:79961603-79961622 | None:intergenic | 45.0% |
!! | CAAAAAATGATGGGTGGTGG+AGG | - | Chr8:79961219-79961238 | MsG0880046922.01.T01:intron | 45.0% |
!! | GGGTGGTGGAGGAAATAATA+TGG | - | Chr8:79961269-79961288 | MsG0880046922.01.T01:intron | 45.0% |
!! | GGTGGCAATTTTAATGGTGG+TGG | - | Chr8:79960882-79960901 | MsG0880046922.01.T01:CDS | 45.0% |
!! | TAGGATTCTGATTCGGGTTC+TGG | + | Chr8:79960629-79960648 | None:intergenic | 45.0% |
!!! | GGCAATTTTAATGGTGGTGG+TGG | - | Chr8:79960885-79960904 | MsG0880046922.01.T01:CDS | 45.0% |
AACCCCCTTCTATGCCTATG+GGG | - | Chr8:79960802-79960821 | MsG0880046922.01.T01:CDS | 50.0% | |
AATGGACAGAAACCTGGTGG+TGG | - | Chr8:79960912-79960931 | MsG0880046922.01.T01:CDS | 50.0% | |
ATGCCTATGAACCGAATGGG+TGG | - | Chr8:79961303-79961322 | MsG0880046922.01.T01:intron | 50.0% | |
ATGTGAGCACCATTCCCCAT+AGG | + | Chr8:79960819-79960838 | None:intergenic | 50.0% | |
CAAGGGAAGGTCACAGTTTC+AGG | - | Chr8:79960222-79960241 | MsG0880046922.01.T01:CDS | 50.0% | |
CAGGGAAACATGCCGAGTTA+TGG | - | Chr8:79960286-79960305 | MsG0880046922.01.T01:CDS | 50.0% | |
CCATTCCCCATAGGCATAGA+AGG | + | Chr8:79960810-79960829 | None:intergenic | 50.0% | |
CCTTCTATGCCTATGGGGAA+TGG | - | Chr8:79960807-79960826 | MsG0880046922.01.T01:CDS | 50.0% | |
GAAACCCCCTTCTATGCCTA+TGG | - | Chr8:79960800-79960819 | MsG0880046922.01.T01:CDS | 50.0% | |
GCATGTGAGTAAGGATCTGG+AGG | + | Chr8:79961594-79961613 | None:intergenic | 50.0% | |
GCGGTGGAAACAAGAATGGA+GGG | - | Chr8:79961086-79961105 | MsG0880046922.01.T01:intron | 50.0% | |
GGAAATGGACAGAAACCTGG+TGG | - | Chr8:79960909-79960928 | MsG0880046922.01.T01:CDS | 50.0% | |
GGATTCCCCTGCATCATTTC+CGG | + | Chr8:79961402-79961421 | None:intergenic | 50.0% | |
GGCAATGGAGGAAAGAAAGG+TGG | - | Chr8:79960984-79961003 | MsG0880046922.01.T01:intron | 50.0% | |
GGTCACAGTTTCAGGGAATG+TGG | - | Chr8:79960230-79960249 | MsG0880046922.01.T01:CDS | 50.0% | |
TCCAGCTGCAATGTCATGTG+AGG | - | Chr8:79961633-79961652 | MsG0880046922.01.T01:five_prime_UTR | 50.0% | |
TCCTGCTGTTCAAGGTCTAC+CGG | - | Chr8:79961332-79961351 | MsG0880046922.01.T01:intron | 50.0% | |
TCTCATCCTGGTAGTATGGG+TGG | - | Chr8:79961252-79961271 | MsG0880046922.01.T01:intron | 50.0% | |
TCTGGAGGAGGATAAGGGTA+AGG | + | Chr8:79961579-79961598 | None:intergenic | 50.0% | |
TGAAGTTGTTGCTGCTGCTG+AGG | + | Chr8:79960510-79960529 | None:intergenic | 50.0% | |
TGTGAGTAAGGATCTGGAGG+AGG | + | Chr8:79961591-79961610 | None:intergenic | 50.0% | |
TTCCCCATAGGCATAGAAGG+GGG | + | Chr8:79960807-79960826 | None:intergenic | 50.0% | |
! | CACGGCATGAATGGTGGAAA+TGG | - | Chr8:79960963-79960982 | MsG0880046922.01.T01:intron | 50.0% |
! | GAATCAACGTGCTGCTATGG+TGG | - | Chr8:79961482-79961501 | MsG0880046922.01.T01:five_prime_UTR | 50.0% |
! | GGAGGAGGTTACTTTCAAGG+TGG | - | Chr8:79961360-79961379 | MsG0880046922.01.T01:CDS | 50.0% |
! | GGAGGTTACTTTCAAGGTGG+TGG | - | Chr8:79961363-79961382 | MsG0880046922.01.T01:CDS | 50.0% |
! | GGTGGCCTTGCATACATCAT+TGG | + | Chr8:79961531-79961550 | None:intergenic | 50.0% |
! | GGTTACTTTCAAGGTGGTGG+TGG | - | Chr8:79961366-79961385 | MsG0880046922.01.T01:exon | 50.0% |
!! | AAAATGATGGGTGGTGGAGG+TGG | - | Chr8:79961222-79961241 | MsG0880046922.01.T01:intron | 50.0% |
!! | CCTGTGCCGGTTCAAATTCA+CGG | - | Chr8:79960945-79960964 | MsG0880046922.01.T01:CDS | 50.0% |
!! | TACTTTCAAGGTGGTGGTGG+TGG | - | Chr8:79961369-79961388 | MsG0880046922.01.T01:exon | 50.0% |
CAGGACCGGAAATGATGCAG+GGG | - | Chr8:79961394-79961413 | MsG0880046922.01.T01:five_prime_UTR | 55.0% | |
CATCCTGGTAGTATGGGTGG+TGG | - | Chr8:79961255-79961274 | MsG0880046922.01.T01:intron | 55.0% | |
CCAGGACCGGAAATGATGCA+GGG | - | Chr8:79961393-79961412 | MsG0880046922.01.T01:five_prime_UTR | 55.0% | |
CCGTGAATTTGAACCGGCAC+AGG | + | Chr8:79960948-79960967 | None:intergenic | 55.0% | |
GGAGGAGGATAAGGGTAAGG+AGG | + | Chr8:79961576-79961595 | None:intergenic | 55.0% | |
GGCGGAAATGGACAGAAACC+TGG | - | Chr8:79960906-79960925 | MsG0880046922.01.T01:CDS | 55.0% | |
GGCGGTGGAAACAAGAATGG+AGG | - | Chr8:79961085-79961104 | MsG0880046922.01.T01:intron | 55.0% | |
TCCAGGACCGGAAATGATGC+AGG | - | Chr8:79961392-79961411 | MsG0880046922.01.T01:five_prime_UTR | 55.0% | |
TGCTGCTGCTGCTGCTGATA+TGG | + | Chr8:79961423-79961442 | None:intergenic | 55.0% | |
! | AGGCGGTGGTGGTAATGTTC+AGG | - | Chr8:79961179-79961198 | MsG0880046922.01.T01:CDS | 55.0% |
! | GGAGGAAAGAAAGGTGGTGG+TGG | - | Chr8:79960990-79961009 | MsG0880046922.01.T01:intron | 55.0% |
! | GGCGGAGGAGGTTACTTTCA+AGG | - | Chr8:79961357-79961376 | MsG0880046922.01.T01:CDS | 55.0% |
! | GGTGGTGGTCAATCTCATCC+TGG | - | Chr8:79961240-79961259 | MsG0880046922.01.T01:intron | 55.0% |
!! | AAGAAAGGTGGTGGTGGTGG+TGG | - | Chr8:79960996-79961015 | MsG0880046922.01.T01:intron | 55.0% |
!! | AATGGTGGTGGTGGCGGAAA+TGG | - | Chr8:79960894-79960913 | MsG0880046922.01.T01:CDS | 55.0% |
!! | ATACCAATTGGTGGCGGAGG+TGG | - | Chr8:79961156-79961175 | MsG0880046922.01.T01:CDS | 55.0% |
!! | GGAAAGAAAGGTGGTGGTGG+TGG | - | Chr8:79960993-79961012 | MsG0880046922.01.T01:intron | 55.0% |
!! | TCGATACCAATTGGTGGCGG+AGG | - | Chr8:79961153-79961172 | MsG0880046922.01.T01:CDS | 55.0% |
!! | TTCTGATTCGGGTTCTGGCC+CGG | + | Chr8:79960624-79960643 | None:intergenic | 55.0% |
AAGTAACCTCCTCCGCCTGC+CGG | + | Chr8:79961354-79961373 | None:intergenic | 60.0% | |
ATGCCGCTGAATCAGCACCC+GGG | - | Chr8:79960603-79960622 | MsG0880046922.01.T01:CDS | 60.0% | |
CCCTGCATCATTTCCGGTCC+TGG | + | Chr8:79961396-79961415 | None:intergenic | 60.0% | |
CCTCCACCACCCATACTACC+AGG | + | Chr8:79961261-79961280 | None:intergenic | 60.0% | |
GATGCCGCTGAATCAGCACC+CGG | - | Chr8:79960602-79960621 | MsG0880046922.01.T01:CDS | 60.0% | |
GCCGGTAGACCTTGAACAGC+AGG | + | Chr8:79961336-79961355 | None:intergenic | 60.0% | |
GCTGTTCAAGGTCTACCGGC+AGG | - | Chr8:79961336-79961355 | MsG0880046922.01.T01:intron | 60.0% | |
GTATGCAAGGCCACCTCCTG+AGG | - | Chr8:79961536-79961555 | MsG0880046922.01.T01:five_prime_UTR | 60.0% | |
GTTCAAGGTCTACCGGCAGG+CGG | - | Chr8:79961339-79961358 | MsG0880046922.01.T01:intron | 60.0% | |
! | CCTGGTAGTATGGGTGGTGG+AGG | - | Chr8:79961258-79961277 | MsG0880046922.01.T01:intron | 60.0% |
!! | AAACCTGGTGGTGGTGGTGG+AGG | - | Chr8:79960921-79960940 | MsG0880046922.01.T01:CDS | 60.0% |
!! | AAAGGTGGTGGTGGTGGTGG+AGG | - | Chr8:79960999-79961018 | MsG0880046922.01.T01:intron | 60.0% |
!! | AAGGTGGTGGTGGTGGTGGA+GGG | - | Chr8:79961000-79961019 | MsG0880046922.01.T01:intron | 60.0% |
!! | ATGATGGGTGGTGGAGGTGG+TGG | - | Chr8:79961225-79961244 | MsG0880046922.01.T01:intron | 60.0% |
!! | CAGAAACCTGGTGGTGGTGG+TGG | - | Chr8:79960918-79960937 | MsG0880046922.01.T01:CDS | 60.0% |
!! | GGACAGAAACCTGGTGGTGG+TGG | - | Chr8:79960915-79960934 | MsG0880046922.01.T01:CDS | 60.0% |
!! | TCTGATTCGGGTTCTGGCCC+GGG | + | Chr8:79960623-79960642 | None:intergenic | 60.0% |
CCTCCACCTCCGCCACCAAT+TGG | + | Chr8:79961162-79961181 | None:intergenic | 65.0% | |
!! | ATTGGTGGCGGAGGTGGAGG+CGG | - | Chr8:79961162-79961181 | MsG0880046922.01.T01:CDS | 65.0% |
!! | CAAGGTGGTGGTGGTGGTCC+AGG | - | Chr8:79961375-79961394 | MsG0880046922.01.T01:exon | 65.0% |
!! | CCAATTGGTGGCGGAGGTGG+AGG | - | Chr8:79961159-79961178 | MsG0880046922.01.T01:CDS | 65.0% |
!! | TGGCCCGGGTGCTGATTCAG+CGG | + | Chr8:79960609-79960628 | None:intergenic | 65.0% |
!! | TGGTGGTGGAGGACCTGTGC+CGG | - | Chr8:79960932-79960951 | MsG0880046922.01.T01:CDS | 65.0% |
!! | TGGTGGTGGTGGTCCAGGAC+CGG | - | Chr8:79961380-79961399 | MsG0880046922.01.T01:exon | 65.0% |
CAAGGTCTACCGGCAGGCGG+AGG | - | Chr8:79961342-79961361 | MsG0880046922.01.T01:intron | 70.0% | |
GGTCCTCCACCACCACCACC+AGG | + | Chr8:79960927-79960946 | None:intergenic | 70.0% | |
GGTCTACCGGCAGGCGGAGG+AGG | - | Chr8:79961345-79961364 | MsG0880046922.01.T01:intron | 75.0% | |
! | GGCGGAGGTGGAGGCGGTGG+TGG | - | Chr8:79961168-79961187 | MsG0880046922.01.T01:CDS | 80.0% |
!!! | GGTGGCGGAGGTGGAGGCGG+TGG | - | Chr8:79961165-79961184 | MsG0880046922.01.T01:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 79959520 | 79961653 | 79959520 | ID=MsG0880046922.01;Name=MsG0880046922.01 |
Chr8 | mRNA | 79959520 | 79961653 | 79959520 | ID=MsG0880046922.01.T01;Parent=MsG0880046922.01;Name=MsG0880046922.01.T01;_AED=0.48;_eAED=0.48;_QI=271|0.66|0.5|1|1|1|4|0|488 |
Chr8 | exon | 79961353 | 79961653 | 79961353 | ID=MsG0880046922.01.T01:exon:1241;Parent=MsG0880046922.01.T01 |
Chr8 | exon | 79961139 | 79961214 | 79961139 | ID=MsG0880046922.01.T01:exon:1242;Parent=MsG0880046922.01.T01 |
Chr8 | exon | 79960129 | 79960980 | 79960129 | ID=MsG0880046922.01.T01:exon:1243;Parent=MsG0880046922.01.T01 |
Chr8 | exon | 79959520 | 79960028 | 79959520 | ID=MsG0880046922.01.T01:exon:1244;Parent=MsG0880046922.01.T01 |
Chr8 | five_prime_UTR | 79961383 | 79961653 | 79961383 | ID=MsG0880046922.01.T01:five_prime_utr;Parent=MsG0880046922.01.T01 |
Chr8 | CDS | 79961353 | 79961382 | 79961353 | ID=MsG0880046922.01.T01:cds;Parent=MsG0880046922.01.T01 |
Chr8 | CDS | 79961139 | 79961214 | 79961139 | ID=MsG0880046922.01.T01:cds;Parent=MsG0880046922.01.T01 |
Chr8 | CDS | 79960129 | 79960980 | 79960129 | ID=MsG0880046922.01.T01:cds;Parent=MsG0880046922.01.T01 |
Chr8 | CDS | 79959520 | 79960028 | 79959520 | ID=MsG0880046922.01.T01:cds;Parent=MsG0880046922.01.T01 |
Gene Sequence |
Protein sequence |