AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018507.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018507.01.T01 MTR_4g013300 76.344 93 17 1 1 93 110 197 8.24e-40 138
MsG0480018507.01.T01 MTR_4g013300 96.875 64 1 1 74 137 317 379 8.81e-37 130
MsG0480018507.01.T01 MTR_7g070480 82.812 64 10 1 74 137 291 353 6.95e-32 117
MsG0480018507.01.T01 MTR_7g070480 62.353 85 26 3 1 85 85 163 1.01e-25 100
MsG0480018507.01.T01 MTR_4g033435 61.818 55 20 1 1 55 257 310 3.55e-17 77.0
MsG0480018507.01.T01 MTR_4g033435 61.818 55 20 1 1 55 257 310 4.23e-17 76.6
MsG0480018507.01.T01 MTR_2g031610 54.386 57 24 1 1 55 127 183 1.42e-14 69.7
MsG0480018507.01.T01 MTR_8g095360 52.239 67 29 2 1 67 167 230 2.27e-14 68.9
MsG0480018507.01.T01 MTR_3g097350 59.259 54 21 1 1 54 235 287 2.99e-14 68.6
MsG0480018507.01.T01 MTR_1g069915 43.750 64 33 2 1 61 132 195 7.73e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018507.01.T01 AT3G51670 89.062 64 6 1 74 137 275 337 3.30e-34 123
MsG0480018507.01.T01 AT3G51670 55.172 87 33 2 1 87 69 149 1.43e-23 94.7
MsG0480018507.01.T01 AT1G72160 60.000 55 21 1 1 55 152 205 3.93e-16 73.9
MsG0480018507.01.T01 AT1G22530 58.730 63 23 2 1 61 319 380 1.23e-15 72.8
MsG0480018507.01.T01 AT1G22530 58.730 63 23 2 1 61 353 414 1.33e-15 72.8
MsG0480018507.01.T01 AT4G09160 56.364 55 23 1 1 55 327 380 6.44e-15 70.5
MsG0480018507.01.T01 AT4G09160 56.364 55 23 1 1 55 302 355 6.79e-15 70.5
MsG0480018507.01.T01 AT4G09160 56.364 55 23 1 1 55 302 355 6.79e-15 70.5
MsG0480018507.01.T01 AT1G72150 53.968 63 26 2 1 61 244 305 1.15e-14 70.1
MsG0480018507.01.T01 AT1G30690 54.237 59 25 1 1 57 205 263 1.69e-14 69.3
MsG0480018507.01.T01 AT1G30690 54.237 59 25 1 1 57 205 263 1.69e-14 69.3

Find 69 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTCTCACTGCAGAAATT+AGG 0.189723 4:+5952785 None:intergenic
CATGGCATGTTTAACTTTAG+AGG 0.237215 4:-5952591 MsG0480018507.01.T01:three_prime_UTR
GTGAACTCAGAAGCTGGTTT+TGG 0.239830 4:+5953640 None:intergenic
GGGATATTGTTGTTGGAGGC+TGG 0.286746 4:-5953053 MsG0480018507.01.T01:CDS
CTTTGAAATATTGTTGATAT+AGG 0.287101 4:+5952292 None:intergenic
AGTTCTCACTGCAGAAATTA+GGG 0.334985 4:+5952786 None:intergenic
TCTGAGGCTCCAATCTTCCT+TGG 0.363487 4:+5952966 None:intergenic
TTGCCCAGTGATTTGCAAAA+TGG 0.368131 4:-5953667 MsG0480018507.01.T01:CDS
CAATTGGTTCTTGAAATTGT+AGG 0.371790 4:-5952333 MsG0480018507.01.T01:three_prime_UTR
ATCACTTGGGATATTGTTGT+TGG 0.389749 4:-5953060 MsG0480018507.01.T01:CDS
TGGTGTACTACCTTCACATT+TGG 0.399523 4:+5953003 None:intergenic
TTCTTGTACCCTTTCTCTGA+AGG 0.400861 4:-5952639 MsG0480018507.01.T01:three_prime_UTR
GTTGAGAAGCCAAGGAAGAT+TGG 0.402510 4:-5952975 MsG0480018507.01.T01:three_prime_UTR
TGAAGGTGCAATCTTACAAT+TGG 0.415307 4:-5952349 MsG0480018507.01.T01:three_prime_UTR
GGATATTGTTGTTGGAGGCT+GGG 0.417198 4:-5953052 MsG0480018507.01.T01:CDS
AGGTTGCGCCTACGAGAGTT+TGG 0.418124 4:-5952750 MsG0480018507.01.T01:three_prime_UTR
CTCAACCCTCCATACTGAAC+AGG 0.444430 4:+5953691 None:intergenic
TCTTGTACCCTTTCTCTGAA+GGG 0.447122 4:-5952638 MsG0480018507.01.T01:three_prime_UTR
GAGGATATTCCTGTTCAGTA+TGG 0.450984 4:-5953700 MsG0480018507.01.T01:CDS
CTACGAGAGTTTGGCTATCA+TGG 0.452012 4:-5952741 MsG0480018507.01.T01:three_prime_UTR
CCTTGGCTTCTCAACTGCTA+TGG 0.460467 4:+5952983 None:intergenic
AAATGAGACCCTTCAGAGAA+AGG 0.466198 4:+5952630 None:intergenic
TGGGGTATTCCTCTCCTTGG+TGG 0.474210 4:-5955249 MsG0480018507.01.T01:CDS
ACTTGGGATATTGTTGTTGG+AGG 0.474804 4:-5953057 MsG0480018507.01.T01:CDS
ATGTGGGGTATTCCTCTCCT+TGG 0.477587 4:-5955252 MsG0480018507.01.T01:CDS
AAAGTGAATATACAAATAGA+AGG 0.487893 4:-5953598 MsG0480018507.01.T01:CDS
TCATTCACATCGAAAGAATC+CGG 0.497680 4:-5952927 MsG0480018507.01.T01:three_prime_UTR
TGATTACAAAGTGTTTAGCT+TGG 0.501944 4:-5955152 MsG0480018507.01.T01:CDS
GCTTCTGAGTTCACTGTCAA+AGG 0.505560 4:-5953631 MsG0480018507.01.T01:CDS
AATGAGACCCTTCAGAGAAA+GGG 0.507040 4:+5952631 None:intergenic
TTGACAGTGAACTCAGAAGC+TGG 0.507103 4:+5953634 None:intergenic
AGTTTGGCTATCATGGTGTC+CGG 0.507849 4:-5952734 MsG0480018507.01.T01:three_prime_UTR
TTATGTTTCTGAACTTGTCA+TGG 0.508955 4:-5952609 MsG0480018507.01.T01:three_prime_UTR
AGTCAGTTCAAAGAGCTTGA+AGG 0.514161 4:-5955087 MsG0480018507.01.T01:CDS
AAGTATCTTTGAAATTGCTA+AGG 0.521989 4:-5952272 MsG0480018507.01.T01:three_prime_UTR
CTCTCGTAGGCGCAACCTCA+AGG 0.530822 4:+5952755 None:intergenic
CTTTCGATGTGAATGAGTTG+TGG 0.533441 4:+5952934 None:intergenic
TACTGAACAGGAATATCCTC+AGG 0.539885 4:+5953703 None:intergenic
CCATAGCAGTTGAGAAGCCA+AGG 0.541463 4:-5952983 MsG0480018507.01.T01:three_prime_UTR
TATACAAATAGAAGGAATTG+AGG 0.543818 4:-5953590 MsG0480018507.01.T01:intron
ATATTGTTGATATAGGACAT+TGG 0.546266 4:+5952299 None:intergenic
TGCAAGTTGCAAACTACAGA+AGG 0.551526 4:-5952381 MsG0480018507.01.T01:three_prime_UTR
AGTAGTACTAGTATATTGCT+TGG 0.560898 4:-5952502 MsG0480018507.01.T01:three_prime_UTR
GATATTCCTGTTCAGTATGG+AGG 0.561935 4:-5953697 MsG0480018507.01.T01:CDS
AGGTGTTATGCTTATATGCA+AGG 0.563038 4:-5955067 MsG0480018507.01.T01:CDS
AATGAGAACAATGTTGGCAC+TGG 0.564335 4:-5952526 MsG0480018507.01.T01:three_prime_UTR
CTGAGTTCACTGTCAAAGGA+GGG 0.573864 4:-5953627 MsG0480018507.01.T01:CDS
AGGGAGGGGCAACTATCACT+TGG 0.574778 4:-5953074 MsG0480018507.01.T01:CDS
ATATTCCTGTTCAGTATGGA+GGG 0.579611 4:-5953696 MsG0480018507.01.T01:CDS
GTTGTGGATTGCTTCTTCTG+AGG 0.580281 4:+5952950 None:intergenic
TCTGAGTTCACTGTCAAAGG+AGG 0.584412 4:-5953628 MsG0480018507.01.T01:CDS
CTCGTGGACACACTGCCTCA+AGG 0.599661 4:-5952892 MsG0480018507.01.T01:three_prime_UTR
GGGAGGGGCAACTATCACTT+GGG 0.603009 4:-5953073 MsG0480018507.01.T01:CDS
TGAGTTCACTGTCAAAGGAG+GGG 0.606287 4:-5953626 MsG0480018507.01.T01:CDS
CTTAATGGTGATATCTCAAG+TGG 0.615306 4:+5952823 None:intergenic
GCTCAGATTCATTAGACCTG+AGG 0.622030 4:-5953719 MsG0480018507.01.T01:intron
CTATCATCTCCACCAAGGAG+AGG 0.629348 4:+5955240 None:intergenic
TATGCAAGGCTATGACAAAG+AGG 0.633798 4:-5955053 MsG0480018507.01.T01:intron
CATGATAGCCAAACTCTCGT+AGG 0.640844 4:+5952742 None:intergenic
AATGGTGATATCTCAAGTGG+TGG 0.651676 4:+5952826 None:intergenic
CAATGGTGAAGTTCCATGTG+GGG 0.655430 4:-5955267 None:intergenic
GTTCACTGTCAAAGGAGGGG+AGG 0.655885 4:-5953623 MsG0480018507.01.T01:CDS
GCAAGTTGCAAACTACAGAA+GGG 0.662029 4:-5952380 MsG0480018507.01.T01:three_prime_UTR
GGTCACAACAAACAGTAACA+TGG 0.662068 4:+5952441 None:intergenic
GAGAACTTGTCGTGACCTTG+AGG 0.662090 4:-5952770 MsG0480018507.01.T01:three_prime_UTR
TGAGTTTGTTCCAAATGTGA+AGG 0.665768 4:-5953013 MsG0480018507.01.T01:three_prime_UTR
AAGGAGAGGAATACCCCACA+TGG 0.675818 4:+5955254 None:intergenic
ACAGAAGGGTGACTTTGTGA+AGG 0.677372 4:-5952366 MsG0480018507.01.T01:three_prime_UTR
CAGCTCTATCATCTCCACCA+AGG 0.706930 4:+5955235 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGAAAAATTTAAATTTCA+GGG + Chr4:5954161-5954180 None:intergenic 10.0%
!! GATAGAAAAATTTAAATTTC+AGG + Chr4:5954162-5954181 None:intergenic 15.0%
!! AAAGTGAATATACAAATAGA+AGG - Chr4:5953913-5953932 MsG0480018507.01.T01:intron 20.0%
!! AATTAAAGCTAGTACTTATT+AGG + Chr4:5952926-5952945 None:intergenic 20.0%
!! AATTGTTTGAATTAGCAATT+TGG - Chr4:5954105-5954124 MsG0480018507.01.T01:intron 20.0%
!! ATCTTAATTTAATCCCTTAA+AGG + Chr4:5954350-5954369 None:intergenic 20.0%
!! ATTAAAGCTAGTACTTATTA+GGG + Chr4:5952925-5952944 None:intergenic 20.0%
!! TGAATGCTAAAAGTAATAAA+TGG + Chr4:5953396-5953415 None:intergenic 20.0%
!! TTGAAAACAAGTTAAAAATC+CGG + Chr4:5954799-5954818 None:intergenic 20.0%
!!! AAACATTATTTGCTGATTAT+GGG + Chr4:5953717-5953736 None:intergenic 20.0%
!!! ATATAATTGTTGTTCCATTT+TGG - Chr4:5953234-5953253 MsG0480018507.01.T01:intron 20.0%
!!! CTTTGAAATATTGTTGATAT+AGG + Chr4:5955222-5955241 None:intergenic 20.0%
!!! TAATTATTAGCTGTTTTAGA+AGG - Chr4:5954265-5954284 MsG0480018507.01.T01:intron 20.0%
!!! TATGATTAGTTCTTTTCTTT+TGG - Chr4:5953993-5954012 MsG0480018507.01.T01:intron 20.0%
!!! TCTAAAATTATTAACTGTGT+CGG + Chr4:5952827-5952846 None:intergenic 20.0%
! ATATGCTAAAAGAGAGTTAA+GGG - Chr4:5952666-5952685 MsG0480018507.01.T01:three_prime_UTR 25.0%
! ATATTGTTGATATAGGACAT+TGG + Chr4:5955215-5955234 None:intergenic 25.0%
! CATGATTTAGTTATGAAACA+CGG - Chr4:5952771-5952790 MsG0480018507.01.T01:three_prime_UTR 25.0%
! TATACAAATAGAAGGAATTG+AGG - Chr4:5953921-5953940 MsG0480018507.01.T01:intron 25.0%
! TGTAAAAATGAGAACAATGT+TGG - Chr4:5954979-5954998 MsG0480018507.01.T01:intron 25.0%
! TTGATTTCATTTGCCTTTAA+GGG - Chr4:5954334-5954353 MsG0480018507.01.T01:intron 25.0%
! TTTGATCAAATTCATACACA+TGG - Chr4:5954369-5954388 MsG0480018507.01.T01:intron 25.0%
!! GAAACATTATTTGCTGATTA+TGG + Chr4:5953718-5953737 None:intergenic 25.0%
!! TGCTAATTCAAACAATTTTC+AGG + Chr4:5954102-5954121 None:intergenic 25.0%
!!! AAGTATCTTTGAAATTGCTA+AGG - Chr4:5955239-5955258 MsG0480018507.01.T01:CDS 25.0%
!!! AGTGTTTGTTTTTGCTTTTT+TGG - Chr4:5953072-5953091 MsG0480018507.01.T01:CDS 25.0%
!!! GTTGTTTTTTTACTTGTTGT+GGG - Chr4:5954404-5954423 MsG0480018507.01.T01:intron 25.0%
!!! TTCATTTTGTTGTTTTTGAG+TGG - Chr4:5953020-5953039 MsG0480018507.01.T01:three_prime_UTR 25.0%
!!! TTGTTTTTTTACTTGTTGTG+GGG - Chr4:5954405-5954424 MsG0480018507.01.T01:intron 25.0%
AAGCTTAAGAAGTTCTTAGA+TGG - Chr4:5952557-5952576 MsG0480018507.01.T01:three_prime_UTR 30.0%
AATCAACACAATCAGTACAT+CGG + Chr4:5953599-5953618 None:intergenic 30.0%
AATCATAATCTGATCTGCAT+AGG + Chr4:5953980-5953999 None:intergenic 30.0%
ACTTTCTTTGTGTTTCCATT+TGG - Chr4:5953739-5953758 MsG0480018507.01.T01:intron 30.0%
AGTAGTACTAGTATATTGCT+TGG - Chr4:5955009-5955028 MsG0480018507.01.T01:intron 30.0%
ATCATAATCTGATCTGCATA+GGG + Chr4:5953979-5953998 None:intergenic 30.0%
CTTTCTTTGTGTTTCCATTT+GGG - Chr4:5953740-5953759 MsG0480018507.01.T01:intron 30.0%
GAGATAAAGATATGTATGAG+AGG - Chr4:5952516-5952535 MsG0480018507.01.T01:three_prime_UTR 30.0%
GATATGCTAAAAGAGAGTTA+AGG - Chr4:5952665-5952684 MsG0480018507.01.T01:three_prime_UTR 30.0%
GTGTATTTGTGACTAGTAAA+AGG + Chr4:5953285-5953304 None:intergenic 30.0%
TGACAGAAAACAAACCAAAA+TGG + Chr4:5953251-5953270 None:intergenic 30.0%
TTAAGAAGTTCTTAGATGGA+GGG - Chr4:5952561-5952580 MsG0480018507.01.T01:three_prime_UTR 30.0%
TTAGTCCTTTGTGTCAAAAA+TGG + Chr4:5953157-5953176 None:intergenic 30.0%
TTAGTTATGAAACACGGATA+CGG - Chr4:5952777-5952796 MsG0480018507.01.T01:three_prime_UTR 30.0%
TTTCTTTGTGTTTCCATTTG+GGG - Chr4:5953741-5953760 MsG0480018507.01.T01:intron 30.0%
! ATGTGCTGACAAAATAAAAG+TGG + Chr4:5953473-5953492 None:intergenic 30.0%
! CAATTGGTTCTTGAAATTGT+AGG - Chr4:5955178-5955197 MsG0480018507.01.T01:CDS 30.0%
! GAAACCAATCTAAAATACCA+AGG + Chr4:5953536-5953555 None:intergenic 30.0%
! GATATGTATGAGAGGATTTT+TGG - Chr4:5952524-5952543 MsG0480018507.01.T01:three_prime_UTR 30.0%
! GTTGATTTCATTTGCCTTTA+AGG - Chr4:5954333-5954352 MsG0480018507.01.T01:intron 30.0%
! TAATACCACCATGATTTTGA+TGG + Chr4:5953652-5953671 None:intergenic 30.0%
! TGATTACAAAGTGTTTAGCT+TGG - Chr4:5952359-5952378 MsG0480018507.01.T01:three_prime_UTR 30.0%
! TTATGTTTCTGAACTTGTCA+TGG - Chr4:5954902-5954921 MsG0480018507.01.T01:intron 30.0%
!! AAGTTCTTGAAAGAGGTATT+AGG - Chr4:5952587-5952606 MsG0480018507.01.T01:three_prime_UTR 30.0%
!! GTCTCTAAAGTACAAGAAAT+TGG + Chr4:5952960-5952979 None:intergenic 30.0%
!! TCATCCTTGGTATTTTAGAT+TGG - Chr4:5953529-5953548 MsG0480018507.01.T01:intron 30.0%
!! TTAGTCCATTTTTGACACAA+AGG - Chr4:5953149-5953168 MsG0480018507.01.T01:intron 30.0%
!! TTATTTTGTCAGCACATTTG+TGG - Chr4:5953476-5953495 MsG0480018507.01.T01:intron 30.0%
!!! ATTTTAGATTGGTTTCTCAC+TGG - Chr4:5953540-5953559 MsG0480018507.01.T01:intron 30.0%
!!! GGTTGTTTTTTTACTTGTTG+TGG - Chr4:5954403-5954422 MsG0480018507.01.T01:intron 30.0%
!!! GTTTGTTTTTGCTTTTTTGG+TGG - Chr4:5953075-5953094 MsG0480018507.01.T01:CDS 30.0%
!!! TGTTTTTTTACTTGTTGTGG+GGG - Chr4:5954406-5954425 MsG0480018507.01.T01:intron 30.0%
!!! TTTGTTGTTTTTGAGTGGAT+TGG - Chr4:5953025-5953044 MsG0480018507.01.T01:three_prime_UTR 30.0%
AAGTTCTCACTGCAGAAATT+AGG + Chr4:5954729-5954748 None:intergenic 35.0%
AAGTTTGTGATCTCAAAGGA+AGG - Chr4:5953181-5953200 MsG0480018507.01.T01:intron 35.0%
ACACTGATCTAGATGTTTAG+TGG - Chr4:5953301-5953320 MsG0480018507.01.T01:intron 35.0%
ACTGCAATCCATCAAAATCA+TGG - Chr4:5953641-5953660 MsG0480018507.01.T01:CDS 35.0%
AGTTCTCACTGCAGAAATTA+GGG + Chr4:5954728-5954747 None:intergenic 35.0%
ATAAGAGAATTAACACCACC+AGG + Chr4:5952627-5952646 None:intergenic 35.0%
ATAGGGAGAGTAAAATGGTA+TGG + Chr4:5953962-5953981 None:intergenic 35.0%
ATATTCCTGTTCAGTATGGA+GGG - Chr4:5953815-5953834 MsG0480018507.01.T01:intron 35.0%
ATCACTTGGGATATTGTTGT+TGG - Chr4:5954451-5954470 MsG0480018507.01.T01:intron 35.0%
CTTAAGAAGTTCTTAGATGG+AGG - Chr4:5952560-5952579 MsG0480018507.01.T01:three_prime_UTR 35.0%
CTTAATGGTGATATCTCAAG+TGG + Chr4:5954691-5954710 None:intergenic 35.0%
GATGGTTTAGATTTCATCCT+TGG - Chr4:5953516-5953535 MsG0480018507.01.T01:intron 35.0%
GTCGTTGAATCGAAATTAGA+TGG - Chr4:5953498-5953517 MsG0480018507.01.T01:intron 35.0%
TAGGGAGAGTAAAATGGTAT+GGG + Chr4:5953961-5953980 None:intergenic 35.0%
TCAAGATAACTACCCTGAAA+TGG - Chr4:5952716-5952735 MsG0480018507.01.T01:three_prime_UTR 35.0%
TCATTCACATCGAAAGAATC+CGG - Chr4:5954584-5954603 MsG0480018507.01.T01:intron 35.0%
TCTTGAAAGAGTGAGAGAAT+AGG + Chr4:5952702-5952721 None:intergenic 35.0%
TTCTTTGTGTTTCCATTTGG+GGG - Chr4:5953742-5953761 MsG0480018507.01.T01:intron 35.0%
! AGATTTTCATCAATGTGCCA+TGG - Chr4:5953101-5953120 MsG0480018507.01.T01:intron 35.0%
! AGGTGTTATGCTTATATGCA+AGG - Chr4:5952444-5952463 MsG0480018507.01.T01:three_prime_UTR 35.0%
! CATGGCATGTTTAACTTTAG+AGG - Chr4:5954920-5954939 MsG0480018507.01.T01:intron 35.0%
! CCATAAGCATTGTAACAAAC+AGG + Chr4:5952488-5952507 None:intergenic 35.0%
! CCTGTTTGTTACAATGCTTA+TGG - Chr4:5952485-5952504 MsG0480018507.01.T01:three_prime_UTR 35.0%
! GTTTTCAAACACACGCTTAA+TGG + Chr4:5954706-5954725 None:intergenic 35.0%
! TAGGTTCTTCATTTTAAGCC+TGG - Chr4:5952606-5952625 MsG0480018507.01.T01:three_prime_UTR 35.0%
! TGAAGGTGCAATCTTACAAT+TGG - Chr4:5955162-5955181 MsG0480018507.01.T01:CDS 35.0%
! TGAGTTTGTTCCAAATGTGA+AGG - Chr4:5954498-5954517 MsG0480018507.01.T01:intron 35.0%
!! AACTTGTTTTCAAACACACG+CGG - Chr4:5954806-5954825 MsG0480018507.01.T01:intron 35.0%
!! TTTGTTGTGACCTTTTTGGT+GGG - Chr4:5955081-5955100 MsG0480018507.01.T01:CDS 35.0%
!!! ACTGTTTGTTGTGACCTTTT+TGG - Chr4:5955077-5955096 MsG0480018507.01.T01:CDS 35.0%
!!! TTGTTTTTGAGTGGATTGGT+TGG - Chr4:5953029-5953048 MsG0480018507.01.T01:exon 35.0%
AAATGAGACCCTTCAGAGAA+AGG + Chr4:5954884-5954903 None:intergenic 40.0%
AATGAGAACAATGTTGGCAC+TGG - Chr4:5954985-5955004 MsG0480018507.01.T01:intron 40.0%
AATGAGACCCTTCAGAGAAA+GGG + Chr4:5954883-5954902 None:intergenic 40.0%
AATGGTGATATCTCAAGTGG+TGG + Chr4:5954688-5954707 None:intergenic 40.0%
AGTCAGTTCAAAGAGCTTGA+AGG - Chr4:5952424-5952443 MsG0480018507.01.T01:three_prime_UTR 40.0%
ATACACATGGAAAGCTGATC+TGG - Chr4:5954382-5954401 MsG0480018507.01.T01:intron 40.0%
CTTTCGATGTGAATGAGTTG+TGG + Chr4:5954580-5954599 None:intergenic 40.0%
GAGCAAGTTTGTGATCTCAA+AGG - Chr4:5953177-5953196 MsG0480018507.01.T01:intron 40.0%
GAGGATATTCCTGTTCAGTA+TGG - Chr4:5953811-5953830 MsG0480018507.01.T01:intron 40.0%
GATATTCCTGTTCAGTATGG+AGG - Chr4:5953814-5953833 MsG0480018507.01.T01:intron 40.0%
GCAAGTTGCAAACTACAGAA+GGG - Chr4:5955131-5955150 MsG0480018507.01.T01:CDS 40.0%
GCAATCCATCAAAATCATGG+TGG - Chr4:5953644-5953663 MsG0480018507.01.T01:CDS 40.0%
GGTCACAACAAACAGTAACA+TGG + Chr4:5955073-5955092 None:intergenic 40.0%
TACTGAACAGGAATATCCTC+AGG + Chr4:5953811-5953830 None:intergenic 40.0%
TATGCAAGGCTATGACAAAG+AGG - Chr4:5952458-5952477 MsG0480018507.01.T01:three_prime_UTR 40.0%
TCTGCATAGGGAGAGTAAAA+TGG + Chr4:5953967-5953986 None:intergenic 40.0%
TCTTGTACCCTTTCTCTGAA+GGG - Chr4:5954873-5954892 MsG0480018507.01.T01:intron 40.0%
TGCAAGTTGCAAACTACAGA+AGG - Chr4:5955130-5955149 MsG0480018507.01.T01:CDS 40.0%
TGGTGTACTACCTTCACATT+TGG + Chr4:5954511-5954530 None:intergenic 40.0%
TTCTTGTACCCTTTCTCTGA+AGG - Chr4:5954872-5954891 MsG0480018507.01.T01:intron 40.0%
! ACCTTTCTAGCACCATTTCA+GGG + Chr4:5952731-5952750 None:intergenic 40.0%
! ACTTGGGATATTGTTGTTGG+AGG - Chr4:5954454-5954473 MsG0480018507.01.T01:intron 40.0%
! AGGGTTCAAGTTCTTGAAAG+AGG - Chr4:5952580-5952599 MsG0480018507.01.T01:three_prime_UTR 40.0%
! GGACCATTTTGCAAATCACT+GGG + Chr4:5953850-5953869 None:intergenic 40.0%
! GTTCTTCATTTTAAGCCTGG+TGG - Chr4:5952609-5952628 MsG0480018507.01.T01:three_prime_UTR 40.0%
! TACAACATGCTGAAGTACCA+TGG + Chr4:5953121-5953140 None:intergenic 40.0%
! TACCTTTCTAGCACCATTTC+AGG + Chr4:5952732-5952751 None:intergenic 40.0%
! TTGCCCAGTGATTTGCAAAA+TGG - Chr4:5953844-5953863 MsG0480018507.01.T01:intron 40.0%
!!! CAGCAACTTTTTTCTCCTTG+AGG + Chr4:5954637-5954656 None:intergenic 40.0%
!!! GACCTTTTTGGTGGGTTTTT+GGG - Chr4:5955089-5955108 MsG0480018507.01.T01:CDS 40.0%
!!! GTTTGTTGTGACCTTTTTGG+TGG - Chr4:5955080-5955099 MsG0480018507.01.T01:CDS 40.0%
!!! TGAACTCAGAAGCTGGTTTT+GGG + Chr4:5953873-5953892 None:intergenic 40.0%
!!! TGACCTTTTTGGTGGGTTTT+TGG - Chr4:5955088-5955107 MsG0480018507.01.T01:CDS 40.0%
AAAGTGGTATTGCCAACTGC+AGG + Chr4:5953457-5953476 None:intergenic 45.0%
ACAGAAGGGTGACTTTGTGA+AGG - Chr4:5955145-5955164 MsG0480018507.01.T01:CDS 45.0%
AGTTTGGCTATCATGGTGTC+CGG - Chr4:5954777-5954796 MsG0480018507.01.T01:intron 45.0%
CAACACAATCAGTACATCGG+TGG + Chr4:5953596-5953615 None:intergenic 45.0%
CATGATAGCCAAACTCTCGT+AGG + Chr4:5954772-5954791 None:intergenic 45.0%
CTACGAGAGTTTGGCTATCA+TGG - Chr4:5954770-5954789 MsG0480018507.01.T01:intron 45.0%
CTGAGTTCACTGTCAAAGGA+GGG - Chr4:5953884-5953903 MsG0480018507.01.T01:intron 45.0%
GCTCAGATTCATTAGACCTG+AGG - Chr4:5953792-5953811 MsG0480018507.01.T01:intron 45.0%
GCTTCTGAGTTCACTGTCAA+AGG - Chr4:5953880-5953899 MsG0480018507.01.T01:intron 45.0%
GTCCCAAAAACCCACCAAAA+AGG + Chr4:5955094-5955113 None:intergenic 45.0%
GTTGAGAAGCCAAGGAAGAT+TGG - Chr4:5954536-5954555 MsG0480018507.01.T01:intron 45.0%
TCAGAAAGCAAACCCCCAAA+TGG + Chr4:5953757-5953776 None:intergenic 45.0%
TCTGAGTTCACTGTCAAAGG+AGG - Chr4:5953883-5953902 MsG0480018507.01.T01:intron 45.0%
TGAGTTCACTGTCAAAGGAG+GGG - Chr4:5953885-5953904 MsG0480018507.01.T01:intron 45.0%
TTGACAGTGAACTCAGAAGC+TGG + Chr4:5953880-5953899 None:intergenic 45.0%
! ACCCTGAAATGGTGCTAGAA+AGG - Chr4:5952727-5952746 MsG0480018507.01.T01:three_prime_UTR 45.0%
! GGATATTGTTGTTGGAGGCT+GGG - Chr4:5954459-5954478 MsG0480018507.01.T01:intron 45.0%
! GGGACCATTTTGCAAATCAC+TGG + Chr4:5953851-5953870 None:intergenic 45.0%
! GTCATTCTTTTGCCTGCAGT+TGG - Chr4:5953442-5953461 MsG0480018507.01.T01:intron 45.0%
! GTTGTGGATTGCTTCTTCTG+AGG + Chr4:5954564-5954583 None:intergenic 45.0%
! TGTTGTGGGGGTGTGAATTA+GGG - Chr4:5954418-5954437 MsG0480018507.01.T01:intron 45.0%
! TTGTTGTGGGGGTGTGAATT+AGG - Chr4:5954417-5954436 MsG0480018507.01.T01:intron 45.0%
! TTGTTTTCAAACACACGCGG+AGG - Chr4:5954809-5954828 MsG0480018507.01.T01:intron 45.0%
!! GTGAACTCAGAAGCTGGTTT+TGG + Chr4:5953874-5953893 None:intergenic 45.0%
!!! AACTCAGAAGCTGGTTTTGG+GGG + Chr4:5953871-5953890 None:intergenic 45.0%
!!! CCACGAGAGTATCTTTTTGC+CGG + Chr4:5954606-5954625 None:intergenic 45.0%
!!! GAACTCAGAAGCTGGTTTTG+GGG + Chr4:5953872-5953891 None:intergenic 45.0%
!!! TTTGGTGGGTTTTTGGGACA+AGG - Chr4:5955095-5955114 MsG0480018507.01.T01:CDS 45.0%
!! ATTTAAAGAAATATTTAATT+TGG - Chr4:5954311-5954330 MsG0480018507.01.T01:intron 5.0%
!!! AATTTTTAAACTTATTTATT+AGG - Chr4:5954076-5954095 MsG0480018507.01.T01:intron 5.0%
CAGCTCTATCATCTCCACCA+AGG + Chr4:5952279-5952298 None:intergenic 50.0%
CCATAGCAGTTGAGAAGCCA+AGG - Chr4:5954528-5954547 MsG0480018507.01.T01:intron 50.0%
CCGGCAAAAAGATACTCTCG+TGG - Chr4:5954603-5954622 MsG0480018507.01.T01:intron 50.0%
CCTTGGCTTCTCAACTGCTA+TGG + Chr4:5954531-5954550 None:intergenic 50.0%
CTATCATCTCCACCAAGGAG+AGG + Chr4:5952274-5952293 None:intergenic 50.0%
CTCAACCCTCCATACTGAAC+AGG + Chr4:5953823-5953842 None:intergenic 50.0%
GAGAACTTGTCGTGACCTTG+AGG - Chr4:5954741-5954760 MsG0480018507.01.T01:intron 50.0%
! ATGTGGGGTATTCCTCTCCT+TGG - Chr4:5952259-5952278 MsG0480018507.01.T01:three_prime_UTR 50.0%
! GGGATATTGTTGTTGGAGGC+TGG - Chr4:5954458-5954477 MsG0480018507.01.T01:intron 50.0%
! TCTGAGGCTCCAATCTTCCT+TGG + Chr4:5954548-5954567 None:intergenic 50.0%
!! CTCAAGTGGTGGCGCATTTT+CGG + Chr4:5954677-5954696 None:intergenic 50.0%
AGGGAGGGGCAACTATCACT+TGG - Chr4:5954437-5954456 MsG0480018507.01.T01:intron 55.0%
AGGTTGCGCCTACGAGAGTT+TGG - Chr4:5954761-5954780 MsG0480018507.01.T01:intron 55.0%
CGGTGGTCATGACTCGAGAT+CGG + Chr4:5953579-5953598 None:intergenic 55.0%
GGGAGGGGCAACTATCACTT+GGG - Chr4:5954438-5954457 MsG0480018507.01.T01:intron 55.0%
GTTCACTGTCAAAGGAGGGG+AGG - Chr4:5953888-5953907 MsG0480018507.01.T01:intron 55.0%
! GTGGGGGTGTGAATTAGGGA+GGG - Chr4:5954422-5954441 MsG0480018507.01.T01:intron 55.0%
! TGGGGGTGTGAATTAGGGAG+GGG - Chr4:5954423-5954442 MsG0480018507.01.T01:intron 55.0%
! TGGGGTATTCCTCTCCTTGG+TGG - Chr4:5952262-5952281 MsG0480018507.01.T01:three_prime_UTR 55.0%
! TGTGGGGGTGTGAATTAGGG+AGG - Chr4:5954421-5954440 MsG0480018507.01.T01:intron 55.0%
CTCGTGGACACACTGCCTCA+AGG - Chr4:5954619-5954638 MsG0480018507.01.T01:intron 60.0%
CTCTCGTAGGCGCAACCTCA+AGG + Chr4:5954759-5954778 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 5952259 5955274 5952259 ID=MsG0480018507.01;Name=MsG0480018507.01
Chr4 mRNA 5952259 5955274 5952259 ID=MsG0480018507.01.T01;Parent=MsG0480018507.01;Name=MsG0480018507.01.T01;_AED=0.27;_eAED=0.27;_QI=0|0.5|0.66|1|1|1|3|788|137
Chr4 exon 5952259 5953094 5952259 ID=MsG0480018507.01.T01:exon:2112;Parent=MsG0480018507.01.T01
Chr4 exon 5953591 5953735 5953591 ID=MsG0480018507.01.T01:exon:2111;Parent=MsG0480018507.01.T01
Chr4 exon 5955054 5955274 5955054 ID=MsG0480018507.01.T01:exon:2110;Parent=MsG0480018507.01.T01
Chr4 CDS 5955054 5955274 5955054 ID=MsG0480018507.01.T01:cds;Parent=MsG0480018507.01.T01
Chr4 CDS 5953591 5953735 5953591 ID=MsG0480018507.01.T01:cds;Parent=MsG0480018507.01.T01
Chr4 CDS 5953047 5953094 5953047 ID=MsG0480018507.01.T01:cds;Parent=MsG0480018507.01.T01
Chr4 three_prime_UTR 5952259 5953046 5952259 ID=MsG0480018507.01.T01:three_prime_utr;Parent=MsG0480018507.01.T01
Gene Sequence

>MsG0480018507.01.T01

ATGTGGGGTATTCCTCTCCTTGGTGGAGATGATAGAGCTGATGTAATACTCTTGAAGTTTCTTAGAGCAAGAGATTTCAGAGTTAATGAAGCATTAAACATGATTACAAAGTGTTTAGCTTGGAGAAAAGAGTTTAATGCTGACACAATAGTTGAAGAAGATTTGAGTCAGTTCAAAGAGCTTGAAGGTGTTATGCTTATATGCAAGGCTATGACAAAGAGATTCATTAGACCTGAGGATATTCCTGTTCAGTATGGAGGGTTGAGTTTGCCCAGTGATTTGCAAAATGGTCCCCCAAAACCAGCTTCTGAGTTCACTGTCAAAGGAGGGGAGGAGAAAGTGAATATACAAATAGAAGGAATTGAGGGAGGGGCAACTATCACTTGGGATATTGTTGTTGGAGGCTGGGATTAG
Protein sequence

>MsG0480018507.01.T01

MWGIPLLGGDDRADVILLKFLRARDFRVNEALNMITKCLAWRKEFNADTIVEEDLSQFKELEGVMLICKAMTKRFIRPEDIPVQYGGLSLPSDLQNGPPKPASEFTVKGGEEKVNIQIEGIEGGATITWDIVVGGWD*