AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021138.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021138.01.T02 MTR_4g067090 95.620 274 12 0 1 274 1 274 0.0 545
MsG0480021138.01.T02 MTR_2g098830 67.037 270 89 0 5 274 647 916 1.78e-127 393
MsG0480021138.01.T02 MTR_2g098830 67.037 270 89 0 5 274 914 1183 6.32e-126 392
MsG0480021138.01.T02 MTR_2g098830 66.667 276 81 3 5 272 4 276 3.24e-118 371
MsG0480021138.01.T02 MTR_2g098710 63.235 272 98 1 3 274 1 270 3.92e-118 346
MsG0480021138.01.T02 MTR_2g098720 63.469 271 97 1 4 274 3 271 2.13e-117 343
MsG0480021138.01.T02 MTR_2g098730 62.222 270 100 1 5 274 4 271 1.00e-111 330
MsG0480021138.01.T02 MTR_0002s1280 53.480 273 84 3 5 274 4 236 1.27e-90 272
MsG0480021138.01.T02 MTR_2g098770 53.309 272 84 3 5 273 4 235 1.29e-87 267
MsG0480021138.01.T02 MTR_2g098740 53.968 63 29 0 4 66 22 84 3.99e-12 62.4
MsG0480021138.01.T01 MTR_4g067090 69.018 326 37 5 1 269 328 646 1.20e-141 412
MsG0480021138.01.T01 MTR_2g098830 41.667 204 111 5 6 205 1240 1439 1.91e-30 120
MsG0480021138.01.T01 MTR_2g098830 36.905 168 97 4 6 169 749 911 4.76e-19 87.0
MsG0480021138.01.T01 MTR_2g098830 41.667 204 111 5 6 205 973 1172 2.22e-30 120
MsG0480021138.01.T01 MTR_2g098830 36.905 168 97 4 6 169 482 644 5.69e-19 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021138.01.T02 AT1G05950 42.063 252 115 3 4 255 13 233 2.29e-54 185
MsG0480021138.01.T02 AT1G05950 42.063 252 115 3 4 255 13 233 2.55e-54 185
MsG0480021138.01.T02 AT1G05950 42.063 252 115 3 4 255 13 233 2.55e-54 185
MsG0480021138.01.T02 AT1G05950 42.063 252 115 3 4 255 13 233 7.41e-54 185
MsG0480021138.01.T02 AT1G05950 42.063 252 115 3 4 255 13 233 1.05e-53 185

Find 79 sgRNAs with CRISPR-Local

Find 556 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGAATCTTGAAGACTTT+GGG 0.158603 4:-54203593 None:intergenic
TAACACTGATATTATGCTTT+TGG 0.222359 4:+54201158 MsG0480021138.01.T01:five_prime_UTR
TTATCTCACAGGGGATTTCT+AGG 0.264933 4:+54201912 MsG0480021138.01.T01:five_prime_UTR
TGGCTCTGGCAATGCTATTC+AGG 0.269758 4:+54202986 MsG0480021138.01.T01:CDS
GTTGAATAAACTGAGAAGTA+TGG 0.279829 4:+54207746 MsG0480021138.01.T01:CDS
ATCACCAATGCTATACAATT+TGG 0.297771 4:+54202918 MsG0480021138.01.T01:CDS
TGTGAGATAACTTCAGAATA+AGG 0.310344 4:-54201899 None:intergenic
GTATAGCATTGGTGATCTTC+TGG 0.317782 4:-54202911 None:intergenic
ATAAGTAAGGACTTGGATTC+TGG 0.324800 4:+54202732 MsG0480021138.01.T01:CDS
ATATAGGACTCTGTCACTTC+AGG 0.328571 4:-54202711 None:intergenic
GCATAGCTTGCAAGGTCCTT+TGG 0.341619 4:+54201817 MsG0480021138.01.T01:intron
TCTTTGAATCTTGAAGACTT+TGG 0.360035 4:-54203594 None:intergenic
ATTTGTTCACATCCATTTCA+TGG 0.360457 4:-54202854 None:intergenic
TGCAAGGTCCTTTGGTCAAA+AGG 0.391451 4:+54201825 MsG0480021138.01.T01:five_prime_UTR
TTTACAAGATTTGAGGGTAG+TGG 0.401313 4:+54202666 MsG0480021138.01.T01:five_prime_UTR
CCTTCAGCAGCGCAAGATAG+AGG 0.405235 4:+54204297 MsG0480021138.01.T01:CDS
ATCCAAGTCCTTACTTATAT+AGG 0.408398 4:-54202727 None:intergenic
TAACCTCCTGATTGATTGAC+TGG 0.422854 4:-54201248 None:intergenic
TATATGCTTCCAACATTACT+TGG 0.425020 4:-54207778 None:intergenic
CAAATTCTGAGAATGTTAAC+TGG 0.435144 4:+54204343 MsG0480021138.01.T01:CDS
CATATAGTTTACAAGATTTG+AGG 0.436673 4:+54202659 MsG0480021138.01.T01:five_prime_UTR
CTCTATCTTGCGCTGCTGAA+GGG 0.440040 4:-54204296 None:intergenic
CCTCTATCTTGCGCTGCTGA+AGG 0.443269 4:-54204297 None:intergenic
AATAGCATTGCCAGAGCCAT+TGG 0.446449 4:-54202982 None:intergenic
TATCATGGAGACCCATGAAA+TGG 0.452413 4:+54202842 MsG0480021138.01.T01:CDS
CCTTTCAATTACATCCTTGA+GGG 0.460597 4:-54201280 None:intergenic
TATAGGACTCTGTCACTTCA+GGG 0.467012 4:-54202710 None:intergenic
TATACAATTTGGTGAACATC+AGG 0.472255 4:+54202929 MsG0480021138.01.T01:CDS
TTGAATAAACTGAGAAGTAT+GGG 0.480086 4:+54207747 MsG0480021138.01.T01:CDS
TTCACCAAATTGTATAGCAT+TGG 0.480139 4:-54202922 None:intergenic
GTCCTATATAAGTAAGGACT+TGG 0.486129 4:+54202725 MsG0480021138.01.T01:CDS
GACAGAGTCCTATATAAGTA+AGG 0.487508 4:+54202719 MsG0480021138.01.T01:CDS
TTGCTATTGGCGGATTACTC+AGG 0.489325 4:+54201324 MsG0480021138.01.T01:intron
ACAAGGATGCTCAACGGTAA+AGG 0.491827 4:+54203445 MsG0480021138.01.T01:CDS
TATCTTCTCTAATAAGAAAG+AGG 0.494834 4:+54203635 MsG0480021138.01.T01:CDS
CAGTTTAAATCCAATGGCTC+TGG 0.497458 4:+54202972 MsG0480021138.01.T01:CDS
TTATTCTGAAGTTATCTCAC+AGG 0.498048 4:+54201901 MsG0480021138.01.T01:five_prime_UTR
GTGCTCCCAGTCAATCAATC+AGG 0.501419 4:+54201242 MsG0480021138.01.T01:five_prime_UTR
TTTGAATCTTGAAGACTTTG+GGG 0.502496 4:-54203592 None:intergenic
ATATAGTTTACAAGATTTGA+GGG 0.508018 4:+54202660 MsG0480021138.01.T01:five_prime_UTR
TTGGATTTAAACTGCACAGA+TGG 0.508608 4:-54202963 None:intergenic
TTTGTTCACATCCATTTCAT+GGG 0.518510 4:-54202853 None:intergenic
TTCTCTTGCTTCAAGAGGAG+TGG 0.519482 4:-54207706 None:intergenic
GTTTATATTAACAGTTACAT+TGG 0.520185 4:-54207649 None:intergenic
TCTCTTGCTTCAAGAGGAGT+GGG 0.522171 4:-54207705 None:intergenic
CCCTCAAGGATGTAATTGAA+AGG 0.522915 4:+54201280 MsG0480021138.01.T01:five_prime_UTR
GGGTAGTGGAGAAAATATAA+TGG 0.524882 4:+54202680 MsG0480021138.01.T01:exon
TCAAAAGGAGTTCTAGCAGT+TGG 0.526233 4:+54201840 MsG0480021138.01.T01:five_prime_UTR
ACTCAGGTCTCAAGGATGAA+TGG 0.528088 4:+54201340 MsG0480021138.01.T01:intron
GAGTTAGAATGATTTGAACT+TGG 0.533019 4:-54203556 None:intergenic
CTATTCTCAAAGCAAAGAAA+AGG 0.537022 4:+54201194 MsG0480021138.01.T01:five_prime_UTR
ATTTCAATATCACCCTCACT+TGG 0.540894 4:-54202768 None:intergenic
AAGTTTAAGTGTTCCGATGA+GGG 0.544204 4:+54207672 MsG0480021138.01.T01:CDS
TAGACCATGTGATTCTATCA+TGG 0.549522 4:+54202827 MsG0480021138.01.T01:CDS
GCTGATTCTCTTGCTTCAAG+AGG 0.555429 4:-54207711 None:intergenic
ACCTTTCAATTACATCCTTG+AGG 0.562218 4:-54201281 None:intergenic
AATAAGAAAGAGGAATGAGC+TGG 0.567307 4:+54203645 MsG0480021138.01.T01:CDS
GGCGGATTACTCAGGTCTCA+AGG 0.576372 4:+54201332 MsG0480021138.01.T01:intron
CTATGAAGATTGACTCGACA+AGG 0.577961 4:+54203428 MsG0480021138.01.T01:CDS
CTTCAGCAGCGCAAGATAGA+GGG 0.579807 4:+54204298 MsG0480021138.01.T01:CDS
ACATGGAAGTAAACCACCAC+AGG 0.580384 4:-54201872 None:intergenic
CTTCAGAATAAGGAAGCACA+TGG 0.581249 4:-54201889 None:intergenic
TATTCTGAAGTTATCTCACA+GGG 0.582725 4:+54201902 MsG0480021138.01.T01:five_prime_UTR
GGTTATTAAAGTTCCCCTCA+AGG 0.585039 4:+54201266 MsG0480021138.01.T01:five_prime_UTR
TCTGTGCAGTTTAAATCCAA+TGG 0.586104 4:+54202966 MsG0480021138.01.T01:CDS
CAAGTTTAAGTGTTCCGATG+AGG 0.593108 4:+54207671 MsG0480021138.01.T01:CDS
CTTTCAATTACATCCTTGAG+GGG 0.598422 4:-54201279 None:intergenic
GGGACACAAGTTACCCTCAT+CGG 0.598530 4:-54207685 None:intergenic
TATTTATAGTAAACCAAGTG+AGG 0.603401 4:+54202755 MsG0480021138.01.T01:CDS
TTGGACGATCACTCCTGTGG+TGG 0.625303 4:+54201859 MsG0480021138.01.T01:five_prime_UTR
AACCTCCTGATTGATTGACT+GGG 0.625426 4:-54201247 None:intergenic
CATGAGCAGAAAGAGAACAA+TGG 0.627353 4:+54202792 MsG0480021138.01.T01:CDS
CTCCCAGTCAATCAATCAGG+AGG 0.644545 4:+54201245 MsG0480021138.01.T01:five_prime_UTR
GACTCGACAAGGATGCTCAA+CGG 0.644800 4:+54203439 MsG0480021138.01.T01:CDS
ATTTATAGTAAACCAAGTGA+GGG 0.646293 4:+54202756 MsG0480021138.01.T01:CDS
AGGATGCTCAACGGTAAAGG+CGG 0.660364 4:+54203448 MsG0480021138.01.T01:CDS
CAGTTGGACGATCACTCCTG+TGG 0.662817 4:+54201856 MsG0480021138.01.T01:five_prime_UTR
GTCTCCATGATAGAATCACA+TGG 0.715164 4:-54202831 None:intergenic
ATTCTGAAGTTATCTCACAG+GGG 0.731508 4:+54201903 MsG0480021138.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATTTTAAAAAATAAAA+CGG - Chr4:54201526-54201545 None:intergenic 0.0%
!! ATATTCTTATATGTAAAAAA+TGG - Chr4:54204055-54204074 None:intergenic 10.0%
!! TCAAGTTTAAAAAATATTAT+TGG + Chr4:54206990-54207009 MsG0480021138.01.T01:intron 10.0%
!!! AAAATAAAATTTTATTCAGA+GGG - Chr4:54200999-54201018 None:intergenic 10.0%
!!! AATTGTTATTTTAAATTTCT+TGG + Chr4:54205988-54206007 MsG0480021138.01.T01:intron 10.0%
!!! TCTTTTTGTAATAATAAAAA+TGG - Chr4:54200745-54200764 None:intergenic 10.0%
!!! TTTTAAAATAATTTTGACAA+AGG + Chr4:54201533-54201552 MsG0480021138.01.T01:intron 10.0%
!! AAACAAAAAATACATACAAA+AGG + Chr4:54200621-54200640 MsG0480021138.01.T01:five_prime_UTR 15.0%
!! ATAATAATGTGAATTCTATT+TGG + Chr4:54199222-54199241 MsG0480021138.01.T01:intron 15.0%
!! ATATATGCTTATTGATATAT+AGG + Chr4:54200123-54200142 MsG0480021138.01.T01:intron 15.0%
!! ATATTATAGTCAATATTCTT+TGG + Chr4:54204115-54204134 MsG0480021138.01.T01:intron 15.0%
!! TAATAATGTGAATTCTATTT+GGG + Chr4:54199223-54199242 MsG0480021138.01.T01:intron 15.0%
!! TATATGCTTATTGATATATA+GGG + Chr4:54200124-54200143 MsG0480021138.01.T01:intron 15.0%
!! TGACTATAATATTCTTATAT+GGG - Chr4:54204107-54204126 None:intergenic 15.0%
!! TTGACTATAATATTCTTATA+TGG - Chr4:54204108-54204127 None:intergenic 15.0%
!! TTGTCAAAGAAAATATAAAA+TGG - Chr4:54202572-54202591 None:intergenic 15.0%
!!! ACATTTTTAAATACAAATTG+TGG + Chr4:54202239-54202258 MsG0480021138.01.T01:intron 15.0%
!!! ACTTTTTTTTTCTTTTCATT+TGG - Chr4:54200071-54200090 None:intergenic 15.0%
!!! ATAAACAAAGTTTTTCAAAA+AGG - Chr4:54201951-54201970 None:intergenic 15.0%
!!! ATCACTTGTTAAAATAAATT+GGG - Chr4:54200866-54200885 None:intergenic 15.0%
!!! ATTATATTAACAAAAGCATA+TGG + Chr4:54206564-54206583 MsG0480021138.01.T01:intron 15.0%
!!! ATTTTAAAAAATAAAACGGA+AGG - Chr4:54201522-54201541 None:intergenic 15.0%
!!! CATTTTTAAATACAAATTGT+GGG + Chr4:54202240-54202259 MsG0480021138.01.T01:intron 15.0%
!!! GAAAATAAAATTTTATTCAG+AGG - Chr4:54201000-54201019 None:intergenic 15.0%
!! AAAATATATATACCCGAAAA+CGG - Chr4:54206691-54206710 None:intergenic 20.0%
!! AATTTCATATATGCCAATAA+AGG - Chr4:54200323-54200342 None:intergenic 20.0%
!! ATAATGATACATTAACTAAC+AGG - Chr4:54201061-54201080 None:intergenic 20.0%
!! ATAATTAACCACTTATTTGA+CGG + Chr4:54207308-54207327 MsG0480021138.01.T01:intron 20.0%
!! ATATAGTTTACAAGATTTGA+GGG + Chr4:54202660-54202679 MsG0480021138.01.T01:five_prime_UTR 20.0%
!! ATTAACCACAAATTTAAATG+TGG - Chr4:54207244-54207263 None:intergenic 20.0%
!! ATTAACCACATTTAAATTTG+TGG + Chr4:54207236-54207255 MsG0480021138.01.T01:intron 20.0%
!! CAATTATTTAAAAAGCTTTG+TGG + Chr4:54202278-54202297 MsG0480021138.01.T01:intron 20.0%
!! GTTTATATTAACAGTTACAT+TGG - Chr4:54207652-54207671 None:intergenic 20.0%
!! GTTTGTATTTATGCATAAAT+TGG + Chr4:54200802-54200821 MsG0480021138.01.T01:intron 20.0%
!! TAAAGAATCAGACAAATAAA+AGG - Chr4:54207388-54207407 None:intergenic 20.0%
!! TAGACTTATTTATATCATTC+AGG + Chr4:54204273-54204292 MsG0480021138.01.T01:intron 20.0%
!! TAGAGAAACATTATGTATAA+TGG - Chr4:54202539-54202558 None:intergenic 20.0%
!! TAGTTACAATTTGTAATGTA+AGG - Chr4:54199858-54199877 None:intergenic 20.0%
!! TATATGTCATGAAAACAATT+GGG + Chr4:54206863-54206882 MsG0480021138.01.T01:intron 20.0%
!! TTAAAGAATATGAATGTACA+TGG + Chr4:54205482-54205501 MsG0480021138.01.T01:intron 20.0%
!! TTAAGTATCTTAAGGTAAAT+AGG - Chr4:54207542-54207561 None:intergenic 20.0%
!! TTGTTAAAATAAATTGGGAA+GGG - Chr4:54200861-54200880 None:intergenic 20.0%
!! TTTCTTATGACACAATTAAA+GGG + Chr4:54206327-54206346 MsG0480021138.01.T01:intron 20.0%
!!! AAAACATACTTTAAGAAACA+TGG - Chr4:54199114-54199133 None:intergenic 20.0%
!!! AAAAGATTTTTTTTCTTCGA+GGG + Chr4:54206468-54206487 MsG0480021138.01.T01:intron 20.0%
!!! AACTCAACTATTTTCTTTTT+GGG + Chr4:54204691-54204710 MsG0480021138.01.T01:intron 20.0%
!!! AATTTTTCGGATAGATATAA+GGG - Chr4:54203135-54203154 None:intergenic 20.0%
!!! AGAAATTAATTTTAGTTGTC+TGG - Chr4:54206399-54206418 None:intergenic 20.0%
!!! CAAAGCTTTTTAAATAATTG+AGG - Chr4:54202278-54202297 None:intergenic 20.0%
!!! CATCACTTGTTAAAATAAAT+TGG - Chr4:54200867-54200886 None:intergenic 20.0%
!!! CATTTTTCTTTATTTTGAGA+TGG - Chr4:54202891-54202910 None:intergenic 20.0%
!!! GAAATTAATTTTAGTTGTCT+GGG - Chr4:54206398-54206417 None:intergenic 20.0%
!!! GACATATTACTTATATTTTG+TGG + Chr4:54206647-54206666 MsG0480021138.01.T01:intron 20.0%
!!! GATCTTTTTAAAGATTTCAA+AGG + Chr4:54203249-54203268 MsG0480021138.01.T01:intron 20.0%
!!! GTTGTTTTCAAAAAAGATAA+AGG - Chr4:54206806-54206825 None:intergenic 20.0%
!!! TAAAAGATTTTTTTTCTTCG+AGG + Chr4:54206467-54206486 MsG0480021138.01.T01:intron 20.0%
!!! TAGACATTTTAAGTATCTTA+AGG - Chr4:54207550-54207569 None:intergenic 20.0%
!!! TAGTTTTATAACTTGTTTAG+AGG + Chr4:54199789-54199808 MsG0480021138.01.T01:intron 20.0%
!!! TTGTGTAATATATTTTACCT+TGG + Chr4:54202622-54202641 MsG0480021138.01.T01:intron 20.0%
!!! TTTGTTTTTCACTCTTTAAT+TGG - Chr4:54204730-54204749 None:intergenic 20.0%
!!! TTTTCGGGTATATATATTTT+GGG + Chr4:54206691-54206710 MsG0480021138.01.T01:intron 20.0%
! AAAAAGATAAAGGAGATGAT+TGG - Chr4:54206796-54206815 None:intergenic 25.0%
! AAACATTATGTATAACCGAT+CGG - Chr4:54199923-54199942 None:intergenic 25.0%
! AAACGGATAGTTAATAAACT+TGG + Chr4:54201754-54201773 MsG0480021138.01.T01:intron 25.0%
! AAATGTGGTTAATAATTCTC+AGG - Chr4:54207229-54207248 None:intergenic 25.0%
! AACAATAACCTCAAATAGAT+TGG - Chr4:54200949-54200968 None:intergenic 25.0%
! AACTAAAATAGCATCACTTA+TGG - Chr4:54202005-54202024 None:intergenic 25.0%
! AACTTGCAAAATTCGTTAAA+TGG - Chr4:54200281-54200300 None:intergenic 25.0%
! AAGACACAAAATAAACTCAA+TGG - Chr4:54205690-54205709 None:intergenic 25.0%
! AAGTTTATTGAGAAATCCAA+AGG + Chr4:54206956-54206975 MsG0480021138.01.T01:intron 25.0%
! AATACGAATATACTTTGTTG+TGG + Chr4:54203755-54203774 MsG0480021138.01.T01:intron 25.0%
! AATTTGTGGTTAATGACTTT+CGG + Chr4:54207250-54207269 MsG0480021138.01.T01:intron 25.0%
! ACATGTCATTAAAATGTTCT+TGG - Chr4:54204782-54204801 None:intergenic 25.0%
! ACCTAATTAATAGATGCATA+TGG + Chr4:54206098-54206117 MsG0480021138.01.T01:intron 25.0%
! AGAATCTCTTTAAATACTGT+AGG - Chr4:54202335-54202354 None:intergenic 25.0%
! ATAACAAGAACTATGTTTGA+AGG - Chr4:54206615-54206634 None:intergenic 25.0%
! ATAATAAGATTGCAACATAC+CGG - Chr4:54201582-54201601 None:intergenic 25.0%
! ATCAATGATAGAATGCATTA+TGG + Chr4:54205743-54205762 MsG0480021138.01.T01:intron 25.0%
! ATCAGATTATTCCAAAGTAT+AGG - Chr4:54201721-54201740 None:intergenic 25.0%
! ATGGATTCCAAATAAATTCA+TGG - Chr4:54206182-54206201 None:intergenic 25.0%
! ATGGTTATTCATCTATAACT+TGG - Chr4:54205671-54205690 None:intergenic 25.0%
! ATGTTGCAATCTTATTATGA+AGG + Chr4:54201584-54201603 MsG0480021138.01.T01:intron 25.0%
! ATTAGATGATATACCTATTG+TGG + Chr4:54205393-54205412 MsG0480021138.01.T01:intron 25.0%
! ATTTATAGTAAACCAAGTGA+GGG + Chr4:54202756-54202775 MsG0480021138.01.T01:CDS 25.0%
! CATATAGTTTACAAGATTTG+AGG + Chr4:54202659-54202678 MsG0480021138.01.T01:five_prime_UTR 25.0%
! CATGTCATTAAAATGTTCTT+GGG - Chr4:54204781-54204800 None:intergenic 25.0%
! CTGTCATACATCATATATTA+GGG + Chr4:54205932-54205951 MsG0480021138.01.T01:intron 25.0%
! CTTGTTAAAATAAATTGGGA+AGG - Chr4:54200862-54200881 None:intergenic 25.0%
! GAATCTCTTTAAATACTGTA+GGG - Chr4:54202334-54202353 None:intergenic 25.0%
! GATTATTTATCAATGCATCT+AGG - Chr4:54206275-54206294 None:intergenic 25.0%
! GTATATGTCATGAAAACAAT+TGG + Chr4:54206862-54206881 MsG0480021138.01.T01:intron 25.0%
! GTTTCTTATGACACAATTAA+AGG + Chr4:54206326-54206345 MsG0480021138.01.T01:intron 25.0%
! TAAATGTTTCGATGAAGTAT+AGG - Chr4:54203189-54203208 None:intergenic 25.0%
! TATCATATTTCTCAACCAAA+CGG + Chr4:54206897-54206916 MsG0480021138.01.T01:intron 25.0%
! TATCGGTAATAAATCAAGAA+GGG + Chr4:54205781-54205800 MsG0480021138.01.T01:intron 25.0%
! TATCTTCTCTAATAAGAAAG+AGG + Chr4:54203635-54203654 MsG0480021138.01.T01:CDS 25.0%
! TATTTATAGTAAACCAAGTG+AGG + Chr4:54202755-54202774 MsG0480021138.01.T01:CDS 25.0%
! TCAGATTATTCCAAAGTATA+GGG - Chr4:54201720-54201739 None:intergenic 25.0%
! TCATAATATCTATCACTCAA+AGG - Chr4:54206445-54206464 None:intergenic 25.0%
! TCATATGAAAAAGACACAAA+AGG + Chr4:54203523-54203542 MsG0480021138.01.T01:CDS 25.0%
! TCCATATGCATCTATTAATT+AGG - Chr4:54206102-54206121 None:intergenic 25.0%
! TCTGTACATTATTGACAAAA+AGG + Chr4:54203835-54203854 MsG0480021138.01.T01:intron 25.0%
! TCTGTCATACATCATATATT+AGG + Chr4:54205931-54205950 MsG0480021138.01.T01:intron 25.0%
! TGATAATCACAGAAGTAAAA+CGG + Chr4:54201737-54201756 MsG0480021138.01.T01:intron 25.0%
! TGGATTCCAAATAAATTCAT+GGG - Chr4:54206181-54206200 None:intergenic 25.0%
! TGTTAAAATAAATTGGGAAG+GGG - Chr4:54200860-54200879 None:intergenic 25.0%
! TTACATATAAGAATATCGAG+TGG + Chr4:54204059-54204078 MsG0480021138.01.T01:intron 25.0%
! TTCAGCTAATAGTGAAAAAA+TGG - Chr4:54206146-54206165 None:intergenic 25.0%
! TTCTTATGACACAATTAAAG+GGG + Chr4:54206328-54206347 MsG0480021138.01.T01:intron 25.0%
!! AAAAATTCTTTTGGTATGCA+TGG + Chr4:54203148-54203167 MsG0480021138.01.T01:intron 25.0%
!! AACACTGATATTATGCTTTT+GGG + Chr4:54201159-54201178 MsG0480021138.01.T01:five_prime_UTR 25.0%
!! ACAATTTGTGCATTTTTCTA+TGG + Chr4:54199350-54199369 MsG0480021138.01.T01:intron 25.0%
!! ACTATTGGTTGAAATTTATG+TGG - Chr4:54206222-54206241 None:intergenic 25.0%
!! ACTCAACTATTTTCTTTTTG+GGG + Chr4:54204692-54204711 MsG0480021138.01.T01:intron 25.0%
!! AGGATTGTTTGAAATGTTTA+GGG + Chr4:54199809-54199828 MsG0480021138.01.T01:intron 25.0%
!! ATATTAACAAAAGCATATGG+TGG + Chr4:54206567-54206586 MsG0480021138.01.T01:intron 25.0%
!! ATCTATCCGAAAAATTCTTT+TGG + Chr4:54203139-54203158 MsG0480021138.01.T01:intron 25.0%
!! CAGTCTAAAACTGTTTATAT+AGG + Chr4:54203062-54203081 MsG0480021138.01.T01:intron 25.0%
!! GAACTCAACTATTTTCTTTT+TGG + Chr4:54204690-54204709 MsG0480021138.01.T01:intron 25.0%
!! GAAGTGCTTATAATTTACAA+CGG - Chr4:54202168-54202187 None:intergenic 25.0%
!! GGTTAATTATTTTCAGTAGA+TGG - Chr4:54207298-54207317 None:intergenic 25.0%
!! TAACACTGATATTATGCTTT+TGG + Chr4:54201158-54201177 MsG0480021138.01.T01:five_prime_UTR 25.0%
!! TGCATACCAAAAGAATTTTT+CGG - Chr4:54203148-54203167 None:intergenic 25.0%
!! TGGTAATGACATAATGTAAA+TGG + Chr4:54205370-54205389 MsG0480021138.01.T01:intron 25.0%
!! TTAAAGAGAGTAAAGGTTTT+TGG + Chr4:54204875-54204894 MsG0480021138.01.T01:intron 25.0%
!! TTGAATAAACTGAGAAGTAT+GGG + Chr4:54207747-54207766 MsG0480021138.01.T01:CDS 25.0%
!! TTGATTGATGTTTCTTTTGA+AGG + Chr4:54207615-54207634 MsG0480021138.01.T01:CDS 25.0%
!! TTTTTCCATGAAGAATGTAT+GGG + Chr4:54204654-54204673 MsG0480021138.01.T01:intron 25.0%
!!! AAAGATTTTTTTTCTTCGAG+GGG + Chr4:54206469-54206488 MsG0480021138.01.T01:intron 25.0%
!!! AATTGTTATCGTTTTGCTAT+TGG + Chr4:54201311-54201330 MsG0480021138.01.T01:intron 25.0%
!!! ATTTTTCGGATAGATATAAG+GGG - Chr4:54203134-54203153 None:intergenic 25.0%
!!! CTTCTAAAATACTGATATCA+TGG + Chr4:54202184-54202203 MsG0480021138.01.T01:intron 25.0%
!!! GAATTTTTCGGATAGATATA+AGG - Chr4:54203136-54203155 None:intergenic 25.0%
!!! GAGTGCAAATATAGTTTTTT+TGG - Chr4:54204249-54204268 None:intergenic 25.0%
!!! GTTTTCGGGTATATATATTT+TGG + Chr4:54206690-54206709 MsG0480021138.01.T01:intron 25.0%
!!! TATGTATAATGGCTTTGATA+CGG - Chr4:54202528-54202547 None:intergenic 25.0%
!!! TCTTTTTCATATGAGGTATT+TGG - Chr4:54203517-54203536 None:intergenic 25.0%
!!! TGTTCTGGCATTTTATTTTA+TGG - Chr4:54206752-54206771 None:intergenic 25.0%
!!! TTTTAGGTTTTCAGAATCAT+TGG + Chr4:54199515-54199534 MsG0480021138.01.T01:intron 25.0%
!!! TTTTCATTTGGTGATGATAA+TGG - Chr4:54200059-54200078 None:intergenic 25.0%
!!! TTTTGTGTCTTTTTCATATG+AGG - Chr4:54203524-54203543 None:intergenic 25.0%
!!! TTTTTTCCATGAAGAATGTA+TGG + Chr4:54204653-54204672 MsG0480021138.01.T01:intron 25.0%
AAAGAATGTTCCTAATATCG+AGG + Chr4:54200451-54200470 MsG0480021138.01.T01:five_prime_UTR 30.0%
AAATTGAAGAGGATGAGAAA+TGG + Chr4:54205350-54205369 MsG0480021138.01.T01:intron 30.0%
AAATTGGCATCACAGATTAA+AGG + Chr4:54200818-54200837 MsG0480021138.01.T01:intron 30.0%
AACCTAGCAAAAATTACCTT+TGG + Chr4:54205521-54205540 MsG0480021138.01.T01:intron 30.0%
AAGAATGTTCCTAATATCGA+GGG + Chr4:54200452-54200471 MsG0480021138.01.T01:five_prime_UTR 30.0%
AATAGAGAAAATAGAGTGAC+AGG + Chr4:54203806-54203825 MsG0480021138.01.T01:intron 30.0%
AATGATGTCTCCTGTAATTA+GGG + Chr4:54201629-54201648 MsG0480021138.01.T01:intron 30.0%
ACAAACAGTTGTCATTAGTT+TGG - Chr4:54205596-54205615 None:intergenic 30.0%
ACATGTGATGAAATGACTAA+AGG + Chr4:54204796-54204815 MsG0480021138.01.T01:intron 30.0%
ACCCAAAAAATTTATAACGC+TGG + Chr4:54203103-54203122 MsG0480021138.01.T01:intron 30.0%
ACTCCAAGAAACACAATAAA+GGG - Chr4:54204439-54204458 None:intergenic 30.0%
AGCTAATAGTGAAAAAATGG+TGG - Chr4:54206143-54206162 None:intergenic 30.0%
AGCTATCATTGACAGAAAAA+GGG + Chr4:54200387-54200406 MsG0480021138.01.T01:five_prime_UTR 30.0%
ATAGAGAAAATAGAGTGACA+GGG + Chr4:54203807-54203826 MsG0480021138.01.T01:intron 30.0%
ATCACCAATGCTATACAATT+TGG + Chr4:54202918-54202937 MsG0480021138.01.T01:CDS 30.0%
ATCCAAGTCCTTACTTATAT+AGG - Chr4:54202730-54202749 None:intergenic 30.0%
ATCTGAAGAGAAAATTGAAG+AGG + Chr4:54205339-54205358 MsG0480021138.01.T01:intron 30.0%
ATGATAGAATGCATTATGGA+AGG + Chr4:54205747-54205766 MsG0480021138.01.T01:intron 30.0%
ATGGAAAAAAAGAAGCAAAG+TGG - Chr4:54204643-54204662 None:intergenic 30.0%
ATTCGTCATGATGAATACAT+AGG + Chr4:54200914-54200933 MsG0480021138.01.T01:intron 30.0%
ATTGACAGAAAAAGGGATTA+TGG + Chr4:54200394-54200413 MsG0480021138.01.T01:five_prime_UTR 30.0%
ATTTGTTCACATCCATTTCA+TGG - Chr4:54202857-54202876 None:intergenic 30.0%
CAAAACATACAGTTAGTGTA+AGG + Chr4:54207088-54207107 MsG0480021138.01.T01:intron 30.0%
CAGAACAAGATATCAATGAA+AGG + Chr4:54205201-54205220 MsG0480021138.01.T01:intron 30.0%
CATATCAAAAAAGATTCCAC+TGG - Chr4:54201425-54201444 None:intergenic 30.0%
CATGTGATGAAATGACTAAA+GGG + Chr4:54204797-54204816 MsG0480021138.01.T01:intron 30.0%
CATTTGCAAAGATAAAACCA+AGG - Chr4:54206543-54206562 None:intergenic 30.0%
CCCAAAAAATTTATAACGCT+GGG + Chr4:54203104-54203123 MsG0480021138.01.T01:intron 30.0%
CTAATTCAAAGATTAAGCTG+TGG + Chr4:54199717-54199736 MsG0480021138.01.T01:intron 30.0%
CTATTCTCAAAGCAAAGAAA+AGG + Chr4:54201194-54201213 MsG0480021138.01.T01:five_prime_UTR 30.0%
CTTACACATGTCAGAATAAA+AGG - Chr4:54204026-54204045 None:intergenic 30.0%
CTTGACAAATTTGTATCCTT+TGG - Chr4:54206975-54206994 None:intergenic 30.0%
CTTTGAATCTTGAAGACTTT+GGG - Chr4:54203596-54203615 None:intergenic 30.0%
GAATAGACATGATTATTAGC+CGG + Chr4:54201560-54201579 MsG0480021138.01.T01:intron 30.0%
GACTATTTGTAGAAAGTAGT+AGG + Chr4:54203014-54203033 MsG0480021138.01.T01:intron 30.0%
GAGTTAGAATGATTTGAACT+TGG - Chr4:54203559-54203578 None:intergenic 30.0%
GGTTGAGAAATATGATAAGT+TGG - Chr4:54206894-54206913 None:intergenic 30.0%
GTAATCGTTGTCACTAAAAT+TGG - Chr4:54202138-54202157 None:intergenic 30.0%
GTCTAGTTACTAGATTGTTA+AGG + Chr4:54206927-54206946 MsG0480021138.01.T01:intron 30.0%
GTGATTAATCACAATCTTCA+GGG + Chr4:54207179-54207198 MsG0480021138.01.T01:intron 30.0%
GTTAAAATAAATTGGGAAGG+GGG - Chr4:54200859-54200878 None:intergenic 30.0%
GTTGAATAAACTGAGAAGTA+TGG + Chr4:54207746-54207765 MsG0480021138.01.T01:CDS 30.0%
TAAAGCAAGGTTAATGTATG+AGG + Chr4:54202400-54202419 MsG0480021138.01.T01:intron 30.0%
TACATCATATATTAGGGCTA+TGG + Chr4:54205938-54205957 MsG0480021138.01.T01:intron 30.0%
TATCTTATCAATGGGAAAAC+TGG - Chr4:54201377-54201396 None:intergenic 30.0%
TATTGGAGTAGTTAGTAAGT+AGG - Chr4:54203987-54204006 None:intergenic 30.0%
TCTTTGAATCTTGAAGACTT+TGG - Chr4:54203597-54203616 None:intergenic 30.0%
TGAAATTTGTCCCTATACTT+TGG + Chr4:54201707-54201726 MsG0480021138.01.T01:intron 30.0%
TGCAAAAATTAGCAAGTAAG+TGG - Chr4:54205883-54205902 None:intergenic 30.0%
TGTGAGATAACTTCAGAATA+AGG - Chr4:54201902-54201921 None:intergenic 30.0%
TGTGATTAATCACAATCTTC+AGG + Chr4:54207178-54207197 MsG0480021138.01.T01:intron 30.0%
TTATGTGGATCACACTATTT+CGG - Chr4:54206207-54206226 None:intergenic 30.0%
TTATTACAAAAAGATCGCAG+TGG + Chr4:54200751-54200770 MsG0480021138.01.T01:intron 30.0%
TTCACCAAATTGTATAGCAT+TGG - Chr4:54202925-54202944 None:intergenic 30.0%
TTCATATATGCCAATAAAGG+TGG - Chr4:54200320-54200339 None:intergenic 30.0%
TTCCCATTGATAAGATAATG+AGG + Chr4:54201380-54201399 MsG0480021138.01.T01:intron 30.0%
TTCGTCATGATGAATACATA+GGG + Chr4:54200915-54200934 MsG0480021138.01.T01:intron 30.0%
TTGAGTCCCATGAATTTATT+TGG + Chr4:54206172-54206191 MsG0480021138.01.T01:intron 30.0%
TTGATATATAGGGATGTGTT+TGG + Chr4:54200134-54200153 MsG0480021138.01.T01:intron 30.0%
TTTAAATACTGTAGGGACTA+GGG - Chr4:54202327-54202346 None:intergenic 30.0%
TTTCTGTTCCAATCTATTTG+AGG + Chr4:54200938-54200957 MsG0480021138.01.T01:intron 30.0%
TTTGAATCTTGAAGACTTTG+GGG - Chr4:54203595-54203614 None:intergenic 30.0%
TTTGTTCACATCCATTTCAT+GGG - Chr4:54202856-54202875 None:intergenic 30.0%
! AATTTTATTCAGAGGGAAGA+AGG - Chr4:54200992-54201011 None:intergenic 30.0%
! ACTTTAAGAAACATGGATGT+TGG - Chr4:54199107-54199126 None:intergenic 30.0%
! ACTTTTACTTCATCTTTTGC+AGG - Chr4:54200665-54200684 None:intergenic 30.0%
! ATCTAGAATCTTGCTAAAGT+AGG + Chr4:54205113-54205132 MsG0480021138.01.T01:intron 30.0%
! ATTGGATTTTTGTGTGTATG+TGG + Chr4:54199474-54199493 MsG0480021138.01.T01:intron 30.0%
! CAAATTCTGAGAATGTTAAC+TGG + Chr4:54204343-54204362 MsG0480021138.01.T01:CDS 30.0%
! CTCAACTATTTTCTTTTTGG+GGG + Chr4:54204693-54204712 MsG0480021138.01.T01:intron 30.0%
! CTTTGATGTGTGTGTTTTAT+TGG + Chr4:54199456-54199475 MsG0480021138.01.T01:intron 30.0%
! GAGGATTGTTTGAAATGTTT+AGG + Chr4:54199808-54199827 MsG0480021138.01.T01:intron 30.0%
! GATAGTTTATGCTAGTTCTT+AGG + Chr4:54205045-54205064 MsG0480021138.01.T01:intron 30.0%
! GGGATTTTGTATGCATTTTA+TGG + Chr4:54199829-54199848 MsG0480021138.01.T01:intron 30.0%
! GTATCGGTAATAAATCAAGA+AGG + Chr4:54205780-54205799 MsG0480021138.01.T01:intron 30.0%
! TACCAAAGGTAATTTTTGCT+AGG - Chr4:54205526-54205545 None:intergenic 30.0%
! TATACAATTTGGTGAACATC+AGG + Chr4:54202929-54202948 MsG0480021138.01.T01:CDS 30.0%
! TATGATTCTGTGGTGTTAAT+TGG + Chr4:54204595-54204614 MsG0480021138.01.T01:intron 30.0%
! TATTTTCAGTAGATGGTTAG+TGG - Chr4:54207291-54207310 None:intergenic 30.0%
! TCAGGTTTTTCTACAACATT+TGG + Chr4:54199592-54199611 MsG0480021138.01.T01:five_prime_UTR 30.0%
! TCTAGAATCTTGCTAAAGTA+GGG + Chr4:54205114-54205133 MsG0480021138.01.T01:intron 30.0%
! TTTTCCATGAAGAATGTATG+GGG + Chr4:54204655-54204674 MsG0480021138.01.T01:intron 30.0%
! TTTTTGTACCGTCAAATAAG+TGG - Chr4:54207319-54207338 None:intergenic 30.0%
!! ATGAGAATTTATTTCTGCCA+AGG - Chr4:54202642-54202661 None:intergenic 30.0%
!! ATTGATGTTTCTTTTGAAGG+TGG + Chr4:54207618-54207637 MsG0480021138.01.T01:CDS 30.0%
!! CTAAGAGGTATTCATTCATT+TGG - Chr4:54203920-54203939 None:intergenic 30.0%
!! GAACGGATTAGTAAAAAAAG+GGG + Chr4:54205081-54205100 MsG0480021138.01.T01:intron 30.0%
!! GAGAAATATGATAAGTTGGT+AGG - Chr4:54206890-54206909 None:intergenic 30.0%
!! GGAACGGATTAGTAAAAAAA+GGG + Chr4:54205080-54205099 MsG0480021138.01.T01:intron 30.0%
!! GGGTATATATATTTTGGGAA+TGG + Chr4:54206696-54206715 MsG0480021138.01.T01:intron 30.0%
!! TATTCTGAAGTTATCTCACA+GGG + Chr4:54201902-54201921 MsG0480021138.01.T01:five_prime_UTR 30.0%
!! TATTTTCTTTTTGGGGGATA+TGG + Chr4:54204699-54204718 MsG0480021138.01.T01:intron 30.0%
!! TTAATTTTGTATTGACCCTC+TGG + Chr4:54199262-54199281 MsG0480021138.01.T01:intron 30.0%
!! TTATTCTGAAGTTATCTCAC+AGG + Chr4:54201901-54201920 MsG0480021138.01.T01:five_prime_UTR 30.0%
!! TTGAGAATGTTGATAGTTTG+TGG + Chr4:54199409-54199428 MsG0480021138.01.T01:intron 30.0%
!! TTTTTCGGATAGATATAAGG+GGG - Chr4:54203133-54203152 None:intergenic 30.0%
!!! ACCCAGCGTTATAAATTTTT+TGG - Chr4:54203108-54203127 None:intergenic 30.0%
!!! ACTAGTTTTAATTGTGAACC+AGG - Chr4:54204573-54204592 None:intergenic 30.0%
!!! CCCAGCGTTATAAATTTTTT+GGG - Chr4:54203107-54203126 None:intergenic 30.0%
!!! CTACACGTTTGATGATTTTT+TGG - Chr4:54207353-54207372 None:intergenic 30.0%
!!! CTAGTTTTAATTGTGAACCA+GGG - Chr4:54204572-54204591 None:intergenic 30.0%
!!! CTGAATTTTAGCTTTGACAA+AGG + Chr4:54201083-54201102 MsG0480021138.01.T01:intron 30.0%
!!! GTCTATACTTTTTTCAACCA+CGG - Chr4:54200570-54200589 None:intergenic 30.0%
!!! GTTAAATTAGTTTTCCCGAA+TGG + Chr4:54199890-54199909 MsG0480021138.01.T01:intron 30.0%
!!! TTTTCTGTTTTTGACGTTGT+CGG + Chr4:54200182-54200201 MsG0480021138.01.T01:intron 30.0%
AAACAAAGAACACCAGTGTA+AGG - Chr4:54204377-54204396 None:intergenic 35.0%
AAACTAGTCGTATGATTCTG+TGG + Chr4:54204585-54204604 MsG0480021138.01.T01:intron 35.0%
AAAGCAGAATACTACTGTCA+TGG - Chr4:54204142-54204161 None:intergenic 35.0%
AAAGTACACATGCATGAAAG+AGG - Chr4:54199440-54199459 None:intergenic 35.0%
AACAACCAACAAATACACCA+AGG - Chr4:54201673-54201692 None:intergenic 35.0%
AACTTCATTAACCACGAACT+TGG + Chr4:54207154-54207173 MsG0480021138.01.T01:intron 35.0%
AAGGACAGAAACTTTCGATA+TGG - Chr4:54200483-54200502 None:intergenic 35.0%
AAGTACACATGCATGAAAGA+GGG - Chr4:54199439-54199458 None:intergenic 35.0%
AAGTTTAAGTGTTCCGATGA+GGG + Chr4:54207672-54207691 MsG0480021138.01.T01:CDS 35.0%
AATAAACTGAGTGGTTAACG+CGG + Chr4:54207063-54207082 MsG0480021138.01.T01:intron 35.0%
AATAAGAAAGAGGAATGAGC+TGG + Chr4:54203645-54203664 MsG0480021138.01.T01:CDS 35.0%
ACAAATCTTTCCTCTTAAGG+GGG - Chr4:54205827-54205846 None:intergenic 35.0%
ACAAATGTTCTTTGAGCGTA+AGG + Chr4:54204745-54204764 MsG0480021138.01.T01:intron 35.0%
ACATGCATAGCTACTGAAAT+GGG - Chr4:54203728-54203747 None:intergenic 35.0%
ACCTTTCAATTACATCCTTG+AGG - Chr4:54201284-54201303 None:intergenic 35.0%
ACTGATAGAATAATGAACCC+AGG - Chr4:54204405-54204424 None:intergenic 35.0%
ACTGTTTGTGTGATACATTG+TGG + Chr4:54202591-54202610 MsG0480021138.01.T01:intron 35.0%
AGGACAGAAACTTTCGATAT+GGG - Chr4:54200482-54200501 None:intergenic 35.0%
AGGCCTCATTATCTTATCAA+TGG - Chr4:54201386-54201405 None:intergenic 35.0%
AGGGAAAAAGAAGAGGAAAA+GGG - Chr4:54205563-54205582 None:intergenic 35.0%
AGTTCTTAGGCACTTAAAAC+AGG + Chr4:54205058-54205077 MsG0480021138.01.T01:intron 35.0%
ATAAGTAAGGACTTGGATTC+TGG + Chr4:54202732-54202751 MsG0480021138.01.T01:CDS 35.0%
ATACAGTTAGTGTAAGGTTG+AGG + Chr4:54207094-54207113 MsG0480021138.01.T01:intron 35.0%
ATACCTATTGTGGTATGCAA+AGG + Chr4:54205403-54205422 MsG0480021138.01.T01:intron 35.0%
ATCTAGATCCTGCAAGATAA+AGG - Chr4:54206841-54206860 None:intergenic 35.0%
ATGAGGATCCTAAATACTGT+TGG + Chr4:54202417-54202436 MsG0480021138.01.T01:intron 35.0%
ATGTCAAGTAAGTCATGTTC+TGG - Chr4:54206767-54206786 None:intergenic 35.0%
ATGTGCATATCCCTAATTAC+AGG - Chr4:54201642-54201661 None:intergenic 35.0%
ATGTGGAAATTGATACCAGA+AGG + Chr4:54199491-54199510 MsG0480021138.01.T01:intron 35.0%
ATTAATCACATCCAAGTTCG+TGG - Chr4:54207168-54207187 None:intergenic 35.0%
ATTTCAATATCACCCTCACT+TGG - Chr4:54202771-54202790 None:intergenic 35.0%
CACTCCAAGAAACACAATAA+AGG - Chr4:54204440-54204459 None:intergenic 35.0%
CAGCTATCATTGACAGAAAA+AGG + Chr4:54200386-54200405 MsG0480021138.01.T01:five_prime_UTR 35.0%
CATGTCAGAATAAAAGGAGT+TGG - Chr4:54204020-54204039 None:intergenic 35.0%
CATTGGATAGAACAAGAACA+TGG + Chr4:54199532-54199551 MsG0480021138.01.T01:five_prime_UTR 35.0%
CCTTAAGAGGAAAGATTTGT+CGG + Chr4:54205827-54205846 MsG0480021138.01.T01:intron 35.0%
CCTTTCAATTACATCCTTGA+GGG - Chr4:54201283-54201302 None:intergenic 35.0%
CGACAAATCTTTCCTCTTAA+GGG - Chr4:54205829-54205848 None:intergenic 35.0%
CTTGGACAAAGAGTAAATGT+AGG - Chr4:54205653-54205672 None:intergenic 35.0%
CTTTAAATACTGTAGGGACT+AGG - Chr4:54202328-54202347 None:intergenic 35.0%
CTTTCAATTACATCCTTGAG+GGG - Chr4:54201282-54201301 None:intergenic 35.0%
GAATGATGTCTCCTGTAATT+AGG + Chr4:54201628-54201647 MsG0480021138.01.T01:intron 35.0%
GACAAATCTTTCCTCTTAAG+GGG - Chr4:54205828-54205847 None:intergenic 35.0%
GACAGAGTCCTATATAAGTA+AGG + Chr4:54202719-54202738 MsG0480021138.01.T01:CDS 35.0%
GCTTTGATACGGACAATAAA+TGG - Chr4:54202517-54202536 None:intergenic 35.0%
GGCCTCATTATCTTATCAAT+GGG - Chr4:54201385-54201404 None:intergenic 35.0%
GGTCAATAATTGTTTCAGTC+AGG + Chr4:54199322-54199341 MsG0480021138.01.T01:intron 35.0%
GTAAGGTTGAGGAATATACT+AGG + Chr4:54207105-54207124 MsG0480021138.01.T01:intron 35.0%
GTAATAAATCAAGAAGGGAC+AGG + Chr4:54205786-54205805 MsG0480021138.01.T01:intron 35.0%
GTCCTATATAAGTAAGGACT+TGG + Chr4:54202725-54202744 MsG0480021138.01.T01:CDS 35.0%
GTTCTTAGGCACTTAAAACA+GGG + Chr4:54205059-54205078 MsG0480021138.01.T01:intron 35.0%
TACCTATTGTGGTATGCAAA+GGG + Chr4:54205404-54205423 MsG0480021138.01.T01:intron 35.0%
TAGACCATGTGATTCTATCA+TGG + Chr4:54202827-54202846 MsG0480021138.01.T01:CDS 35.0%
TAGACTTAACATGAGTGATG+AGG + Chr4:54205282-54205301 MsG0480021138.01.T01:intron 35.0%
TAGTAGTGAGTGACACATTA+AGG - Chr4:54201465-54201484 None:intergenic 35.0%
TATACCTGAGACAGTGTTTA+AGG - Chr4:54199064-54199083 None:intergenic 35.0%
TATTATTAACCGCAGATCGA+AGG - Chr4:54199962-54199981 None:intergenic 35.0%
TCTAGATCCTGCAAGATAAA+GGG - Chr4:54206840-54206859 None:intergenic 35.0%
TCTCCCTTTATTGTGTTTCT+TGG + Chr4:54204433-54204452 MsG0480021138.01.T01:intron 35.0%
TCTGTGCAGTTTAAATCCAA+TGG + Chr4:54202966-54202985 MsG0480021138.01.T01:CDS 35.0%
TCTTGTTGATACACGTAGAT+GGG + Chr4:54205706-54205725 MsG0480021138.01.T01:intron 35.0%
TGAATACCTCTTAGTTACAG+TGG + Chr4:54203926-54203945 MsG0480021138.01.T01:intron 35.0%
TGACAAAAAGGTGATGAACA+GGG + Chr4:54203847-54203866 MsG0480021138.01.T01:intron 35.0%
TGAGCAAACTACTGCTAAAT+TGG - Chr4:54201975-54201994 None:intergenic 35.0%
TGTGGAAATTGATACCAGAA+GGG + Chr4:54199492-54199511 MsG0480021138.01.T01:intron 35.0%
TGTTGTACAGTTTCTCTGTT+TGG + Chr4:54199765-54199784 MsG0480021138.01.T01:intron 35.0%
TTGAAACATTGAAGCCAAAC+AGG + Chr4:54199019-54199038 MsG0480021138.01.T01:five_prime_UTR 35.0%
TTGACAAAAAGGTGATGAAC+AGG + Chr4:54203846-54203865 MsG0480021138.01.T01:intron 35.0%
TTGACTGAAGCTCTTAAGTT+TGG + Chr4:54202055-54202074 MsG0480021138.01.T01:intron 35.0%
TTGGATTTAAACTGCACAGA+TGG - Chr4:54202966-54202985 None:intergenic 35.0%
TTTAAACAACCTTCGATCTG+CGG + Chr4:54199950-54199969 MsG0480021138.01.T01:intron 35.0%
TTTACAAGATTTGAGGGTAG+TGG + Chr4:54202666-54202685 MsG0480021138.01.T01:five_prime_UTR 35.0%
TTTATCTTGCAGGATCTAGA+TGG + Chr4:54206840-54206859 MsG0480021138.01.T01:intron 35.0%
! AAAAATGGTGGAAAGAGTGT+TGG - Chr4:54206131-54206150 None:intergenic 35.0%
! AACAAATGACTCAAGCATTG+AGG - Chr4:54203374-54203393 None:intergenic 35.0%
! AAGATAGACTTTTGCAAGTC+GGG + Chr4:54200690-54200709 MsG0480021138.01.T01:five_prime_UTR 35.0%
! AGCTGATGATTTGTGTACTA+TGG + Chr4:54201123-54201142 MsG0480021138.01.T01:intron 35.0%
! AGTGATGATGTCAATCACAA+AGG + Chr4:54200880-54200899 MsG0480021138.01.T01:intron 35.0%
! ATTGATACCAGAAGGGTTTT+AGG + Chr4:54199499-54199518 MsG0480021138.01.T01:intron 35.0%
! CTGTTGAGACTTCAGAATTT+TGG - Chr4:54200601-54200620 None:intergenic 35.0%
! CTTTGGGTTAAAGAGAGTAA+AGG + Chr4:54204868-54204887 MsG0480021138.01.T01:intron 35.0%
! GAAGATAGACTTTTGCAAGT+CGG + Chr4:54200689-54200708 MsG0480021138.01.T01:five_prime_UTR 35.0%
! GAGTTGGTTGAGTTAGTTAT+TGG - Chr4:54204004-54204023 None:intergenic 35.0%
! TGATTTGTGTACTATGGTAC+AGG + Chr4:54201129-54201148 MsG0480021138.01.T01:intron 35.0%
! TGGTGTATTTGTTGGTTGTT+TGG + Chr4:54201673-54201692 MsG0480021138.01.T01:intron 35.0%
! TTCTGTGGTGTTAATTGGTA+AGG + Chr4:54204600-54204619 MsG0480021138.01.T01:intron 35.0%
! TTTTCTTTGTTAAACAGCCC+CGG - Chr4:54206495-54206514 None:intergenic 35.0%
! TTTTGCTGCAATAAACTGAG+TGG + Chr4:54207054-54207073 MsG0480021138.01.T01:intron 35.0%
!! AATGGCAGATATTCTAGTTC+TGG - Chr4:54200263-54200282 None:intergenic 35.0%
!! ACAAATGACTCAAGCATTGA+GGG - Chr4:54203373-54203392 None:intergenic 35.0%
!! ATTCTGAAGTTATCTCACAG+GGG + Chr4:54201903-54201922 MsG0480021138.01.T01:five_prime_UTR 35.0%
!! GGGAACGGATTAGTAAAAAA+AGG + Chr4:54205079-54205098 MsG0480021138.01.T01:intron 35.0%
!! GGGTAGTGGAGAAAATATAA+TGG + Chr4:54202680-54202699 MsG0480021138.01.T01:exon 35.0%
!! TTTTGCTAGGTTCTAGCAAA+TGG - Chr4:54205513-54205532 None:intergenic 35.0%
!!! CGAATTTTGCAAGTTGATTG+TGG + Chr4:54200286-54200305 MsG0480021138.01.T01:five_prime_UTR 35.0%
!!! CTGTATAGTTTTGTTCACAC+AGG + Chr4:54205961-54205980 MsG0480021138.01.T01:intron 35.0%
!!! CTTTTTTTGCATAGCTTGCA+AGG + Chr4:54201809-54201828 MsG0480021138.01.T01:intron 35.0%
!!! TGTTATCGTTTTGCTATTGG+CGG + Chr4:54201314-54201333 MsG0480021138.01.T01:intron 35.0%
!!! TGTTCTTTGTTTTGCTTCCT+GGG + Chr4:54204385-54204404 MsG0480021138.01.T01:intron 35.0%
!!! TTTTGACGTTGTCGGTTTTT+AGG + Chr4:54200190-54200209 MsG0480021138.01.T01:intron 35.0%
AAAGAAGAGGAAAAGGGAGT+TGG - Chr4:54205557-54205576 None:intergenic 40.0%
AACAGGGTCCAACAGTATTT+AGG - Chr4:54202428-54202447 None:intergenic 40.0%
AACCCTTTGCATACCACAAT+AGG - Chr4:54205409-54205428 None:intergenic 40.0%
AACCTCCTGATTGATTGACT+GGG - Chr4:54201250-54201269 None:intergenic 40.0%
AACTAGACAGTCTTACCGTT+TGG - Chr4:54206915-54206934 None:intergenic 40.0%
AAGAAGAGGAAAAGGGAGTT+GGG - Chr4:54205556-54205575 None:intergenic 40.0%
AAGCAGAAAACACACCTGTT+TGG - Chr4:54199687-54199706 None:intergenic 40.0%
ACAGCAAGTAATTGCCAAAC+AGG + Chr4:54199670-54199689 MsG0480021138.01.T01:five_prime_UTR 40.0%
ACCAATAGTAGAGATAGTGC+CGG + Chr4:54206233-54206252 MsG0480021138.01.T01:intron 40.0%
ACCTGTGAGAACTGAGAATA+AGG + Chr4:54202080-54202099 MsG0480021138.01.T01:intron 40.0%
ACCTTTGAACTGAACCTGTT+TGG - Chr4:54199036-54199055 None:intergenic 40.0%
AGCTAAGCAAGACAACAAGA+AGG + Chr4:54204997-54205016 MsG0480021138.01.T01:intron 40.0%
AGTATAGCCAAAGCAACACT+AGG + Chr4:54204826-54204845 MsG0480021138.01.T01:intron 40.0%
ATAAATCAAGAAGGGACAGG+TGG + Chr4:54205789-54205808 MsG0480021138.01.T01:intron 40.0%
ATCCATCCACTGTAACTAAG+AGG - Chr4:54203935-54203954 None:intergenic 40.0%
ATGTTCCTAATATCGAGGGA+TGG + Chr4:54200456-54200475 MsG0480021138.01.T01:five_prime_UTR 40.0%
ATTGCTGCCAGAAAAAGCTT+CGG + Chr4:54199622-54199641 MsG0480021138.01.T01:five_prime_UTR 40.0%
ATTGTGGTATGCAAAGGGTT+AGG + Chr4:54205409-54205428 MsG0480021138.01.T01:intron 40.0%
CAAACCTTAAACACTGTCTC+AGG + Chr4:54199057-54199076 MsG0480021138.01.T01:five_prime_UTR 40.0%
CAAGAGACTTGAACTAGTTG+AGG + Chr4:54205146-54205165 MsG0480021138.01.T01:intron 40.0%
CAAGTTTAAGTGTTCCGATG+AGG + Chr4:54207671-54207690 MsG0480021138.01.T01:CDS 40.0%
CACATGCATAGCTACTGAAA+TGG - Chr4:54203729-54203748 None:intergenic 40.0%
CAGTAACTAACCAGAGAAGA+TGG - Chr4:54200160-54200179 None:intergenic 40.0%
CAGTTTAAATCCAATGGCTC+TGG + Chr4:54202972-54202991 MsG0480021138.01.T01:CDS 40.0%
CATGAAGAATGTATGGGGTT+GGG + Chr4:54204660-54204679 MsG0480021138.01.T01:intron 40.0%
CATGAGCAGAAAGAGAACAA+TGG + Chr4:54202792-54202811 MsG0480021138.01.T01:CDS 40.0%
CCCTCAAGGATGTAATTGAA+AGG + Chr4:54201280-54201299 MsG0480021138.01.T01:five_prime_UTR 40.0%
CCGACAAATCTTTCCTCTTA+AGG - Chr4:54205830-54205849 None:intergenic 40.0%
CCTGTGAGAACTGAGAATAA+GGG + Chr4:54202081-54202100 MsG0480021138.01.T01:intron 40.0%
CTACTGCAAGCTATAAAGCA+AGG + Chr4:54202387-54202406 MsG0480021138.01.T01:intron 40.0%
CTGAAAACCTAAAACCCTTC+TGG - Chr4:54199509-54199528 None:intergenic 40.0%
CTGAATGTCATTGCTTTGAC+AGG + Chr4:54203405-54203424 MsG0480021138.01.T01:intron 40.0%
CTGTGAGAACTGAGAATAAG+GGG + Chr4:54202082-54202101 MsG0480021138.01.T01:intron 40.0%
GAGGGAAAAAGAAGAGGAAA+AGG - Chr4:54205564-54205583 None:intergenic 40.0%
GCCTCCATAATTCAAGACTT+CGG - Chr4:54206423-54206442 None:intergenic 40.0%
GCTTGCATGGTTTGAAGAAA+TGG + Chr4:54202478-54202497 MsG0480021138.01.T01:intron 40.0%
GGATCACACTATTTCGGATA+TGG - Chr4:54206201-54206220 None:intergenic 40.0%
GGTGTTAATTGGTAAGGCAT+TGG + Chr4:54204606-54204625 MsG0480021138.01.T01:intron 40.0%
GGTTATTAAAGTTCCCCTCA+AGG + Chr4:54201266-54201285 MsG0480021138.01.T01:five_prime_UTR 40.0%
GGTTTATTTGAACGCATTGC+TGG + Chr4:54199738-54199757 MsG0480021138.01.T01:intron 40.0%
GTAGGTCTGAGTTAGAGAAT+GGG - Chr4:54205635-54205654 None:intergenic 40.0%
GTCTCCATGATAGAATCACA+TGG - Chr4:54202834-54202853 None:intergenic 40.0%
TAACCTCCTGATTGATTGAC+TGG - Chr4:54201251-54201270 None:intergenic 40.0%
TAAGAGGAAAGATTTGTCGG+AGG + Chr4:54205830-54205849 MsG0480021138.01.T01:intron 40.0%
TACCTCTTAGTTACAGTGGA+TGG + Chr4:54203930-54203949 MsG0480021138.01.T01:intron 40.0%
TACTGATATCATGGCACCTT+TGG + Chr4:54202193-54202212 MsG0480021138.01.T01:intron 40.0%
TAGAACTCCCTTTATCTTGC+AGG + Chr4:54206830-54206849 MsG0480021138.01.T01:intron 40.0%
TAGGCACTTAAAACAGGGAA+CGG + Chr4:54205064-54205083 MsG0480021138.01.T01:intron 40.0%
TAGTTGTCTGGGTGTGAATA+GGG - Chr4:54206387-54206406 None:intergenic 40.0%
TATCATGGAGACCCATGAAA+TGG + Chr4:54202842-54202861 MsG0480021138.01.T01:CDS 40.0%
TATGCACATTCTGTGTACCT+TGG + Chr4:54201653-54201672 MsG0480021138.01.T01:intron 40.0%
TCAACATAGACTCACACCAA+AGG - Chr4:54202212-54202231 None:intergenic 40.0%
TCTGCCGAAGTCTTGAATTA+TGG + Chr4:54206416-54206435 MsG0480021138.01.T01:intron 40.0%
TGAAGTAGAGCTCATAGATG+TGG + Chr4:54200358-54200377 MsG0480021138.01.T01:five_prime_UTR 40.0%
TGCTGACAGATTCTACATCT+AGG - Chr4:54207412-54207431 None:intergenic 40.0%
TGTAGGTCTGAGTTAGAGAA+TGG - Chr4:54205636-54205655 None:intergenic 40.0%
TGTTGTACAACTACTACCAC+AGG + Chr4:54200228-54200247 MsG0480021138.01.T01:five_prime_UTR 40.0%
TTAGTTGTCTGGGTGTGAAT+AGG - Chr4:54206388-54206407 None:intergenic 40.0%
TTATCTCACAGGGGATTTCT+AGG + Chr4:54201912-54201931 MsG0480021138.01.T01:five_prime_UTR 40.0%
TTCATATATGCATGCGTCCT+TGG + Chr4:54206523-54206542 MsG0480021138.01.T01:intron 40.0%
TTCTAATATGCACTTTGCCC+TGG + Chr4:54204552-54204571 MsG0480021138.01.T01:intron 40.0%
TTGAACTAGTTGAGGTGCAT+TGG + Chr4:54205154-54205173 MsG0480021138.01.T01:intron 40.0%
TTTCAGTAGATGGTTAGTGG+AGG - Chr4:54207288-54207307 None:intergenic 40.0%
! AGCAGATCTGATGCTAGTTT+AGG + Chr4:54204515-54204534 MsG0480021138.01.T01:intron 40.0%
! ATAGGAAGTGCAACGATAAG+TGG - Chr4:54207524-54207543 None:intergenic 40.0%
! ATATAGGACTCTGTCACTTC+AGG - Chr4:54202714-54202733 None:intergenic 40.0%
! CCTTCTTGCTGTCGATTAAA+AGG - Chr4:54200502-54200521 None:intergenic 40.0%
! CCTTTTAATCGACAGCAAGA+AGG + Chr4:54200499-54200518 MsG0480021138.01.T01:five_prime_UTR 40.0%
! CTAGAACTCCTTTTGACCAA+AGG - Chr4:54201836-54201855 None:intergenic 40.0%
! CTTCAGAATAAGGAAGCACA+TGG - Chr4:54201892-54201911 None:intergenic 40.0%
! GCTTTATAGCTTGCAGTAGA+TGG - Chr4:54202386-54202405 None:intergenic 40.0%
! GTCTTGTTGATACACGTAGA+TGG + Chr4:54205705-54205724 MsG0480021138.01.T01:intron 40.0%
! GTGTACCTTGGTGTATTTGT+TGG + Chr4:54201665-54201684 MsG0480021138.01.T01:intron 40.0%
! TATAGGACTCTGTCACTTCA+GGG - Chr4:54202713-54202732 None:intergenic 40.0%
! TCAAAAGGAGTTCTAGCAGT+TGG + Chr4:54201840-54201859 MsG0480021138.01.T01:five_prime_UTR 40.0%
! TCTGATGCTAGTTTAGGCAT+TGG + Chr4:54204521-54204540 MsG0480021138.01.T01:intron 40.0%
! TTTCCTTGTGTGACCGTTTT+CGG + Chr4:54206675-54206694 MsG0480021138.01.T01:intron 40.0%
!! CAAATGACTCAAGCATTGAG+GGG - Chr4:54203372-54203391 None:intergenic 40.0%
!! CATTTGGTGATGATAATGGC+AGG - Chr4:54200055-54200074 None:intergenic 40.0%
!! CTAGTTTAGGCATTGGTTAC+TGG + Chr4:54204528-54204547 MsG0480021138.01.T01:intron 40.0%
!! CTATGAAGATTGACTCGACA+AGG + Chr4:54203428-54203447 MsG0480021138.01.T01:CDS 40.0%
!! GTATAGCATTGGTGATCTTC+TGG - Chr4:54202914-54202933 None:intergenic 40.0%
!! TGAGACTTCAGAATTTTGGC+TGG - Chr4:54200597-54200616 None:intergenic 40.0%
!! TTAGAGAATGGGTTAGTCAG+AGG - Chr4:54205624-54205643 None:intergenic 40.0%
!! TTTCTTGGAAGCATTGTTGC+TGG + Chr4:54206003-54206022 MsG0480021138.01.T01:intron 40.0%
!! TTTCTTTTTGGGGGATATGG+TGG + Chr4:54204702-54204721 MsG0480021138.01.T01:intron 40.0%
!!! AGAGTAAAGGTTTTTGGTCG+TGG + Chr4:54204881-54204900 MsG0480021138.01.T01:intron 40.0%
!!! AGTAAAGGTTTTTGGTCGTG+GGG + Chr4:54204883-54204902 MsG0480021138.01.T01:intron 40.0%
!!! ATTTTTTTTCTTCGAGGGGC+CGG + Chr4:54206473-54206492 MsG0480021138.01.T01:intron 40.0%
!!! GAGAACTGCTTTTTGCTGTT+TGG + Chr4:54200521-54200540 MsG0480021138.01.T01:five_prime_UTR 40.0%
!!! GAGTAAAGGTTTTTGGTCGT+GGG + Chr4:54204882-54204901 MsG0480021138.01.T01:intron 40.0%
!!! GTGTTCTTTGTTTTGCTTCC+TGG + Chr4:54204384-54204403 MsG0480021138.01.T01:intron 40.0%
AAGTGAAGGGGTTTCAGCTT+TGG + Chr4:54204851-54204870 MsG0480021138.01.T01:intron 45.0%
AATAGCATTGCCAGAGCCAT+TGG - Chr4:54202985-54203004 None:intergenic 45.0%
AATCTTTCCTCTTAAGGGGG+AGG - Chr4:54205824-54205843 None:intergenic 45.0%
ACAAGGATGCTCAACGGTAA+AGG + Chr4:54203445-54203464 MsG0480021138.01.T01:CDS 45.0%
ACATGGAAGTAAACCACCAC+AGG - Chr4:54201875-54201894 None:intergenic 45.0%
ACCGGCACTATCTCTACTAT+TGG - Chr4:54206237-54206256 None:intergenic 45.0%
ACCTGAATTGCATCCTCAGT+TGG - Chr4:54199578-54199597 None:intergenic 45.0%
ACTATGTTTGAAGGCTCGCA+CGG - Chr4:54206606-54206625 None:intergenic 45.0%
ACTCAGGTCTCAAGGATGAA+TGG + Chr4:54201340-54201359 MsG0480021138.01.T01:intron 45.0%
AGCAACACTAGGAGAAGTGA+AGG + Chr4:54204837-54204856 MsG0480021138.01.T01:intron 45.0%
AGTGAAGGGGTTTCAGCTTT+GGG + Chr4:54204852-54204871 MsG0480021138.01.T01:intron 45.0%
ATCAGATGTGTGTCCAACTG+AGG + Chr4:54199562-54199581 MsG0480021138.01.T01:five_prime_UTR 45.0%
ATGTGTTTGGCCATCTTCTC+TGG + Chr4:54200147-54200166 MsG0480021138.01.T01:intron 45.0%
CAACACTAGGAGAAGTGAAG+GGG + Chr4:54204839-54204858 MsG0480021138.01.T01:intron 45.0%
CAGTTGGAGGGAAAAAGAAG+AGG - Chr4:54205570-54205589 None:intergenic 45.0%
CCAACCCCATACATTCTTCA+TGG - Chr4:54204662-54204681 None:intergenic 45.0%
CCATGAAGAATGTATGGGGT+TGG + Chr4:54204659-54204678 MsG0480021138.01.T01:intron 45.0%
CCCTTATTCTCAGTTCTCAC+AGG - Chr4:54202084-54202103 None:intergenic 45.0%
CCGAATGGAATGAAACCGAT+CGG + Chr4:54199905-54199924 MsG0480021138.01.T01:intron 45.0%
CTCGTACAGTCTCACTTGTA+TGG + Chr4:54202449-54202468 MsG0480021138.01.T01:intron 45.0%
CTCTCTCGGTCATACATTAC+TGG + Chr4:54204178-54204197 MsG0480021138.01.T01:intron 45.0%
CTGGTATGCTTTCCTTACAC+TGG + Chr4:54204362-54204381 MsG0480021138.01.T01:intron 45.0%
GAGAAAATAGAGTGACAGGG+TGG + Chr4:54203810-54203829 MsG0480021138.01.T01:intron 45.0%
GATTCCACTGGAATGCCTTA+CGG - Chr4:54201413-54201432 None:intergenic 45.0%
GCAACACTAGGAGAAGTGAA+GGG + Chr4:54204838-54204857 MsG0480021138.01.T01:intron 45.0%
GCCAAACAGGTTCAGTTCAA+AGG + Chr4:54199032-54199051 MsG0480021138.01.T01:five_prime_UTR 45.0%
GCCGAAGTCTTGAATTATGG+AGG + Chr4:54206419-54206438 MsG0480021138.01.T01:intron 45.0%
GGAAAGAGCAATAGCTCAGT+CGG - Chr4:54203899-54203918 None:intergenic 45.0%
GGAAGGCTGCAATGATGTAT+CGG + Chr4:54205764-54205783 MsG0480021138.01.T01:intron 45.0%
TAATGAGGCCTGTTTCCGTA+AGG + Chr4:54201395-54201414 MsG0480021138.01.T01:intron 45.0%
TCCAACTGAGGATGCAATTC+AGG + Chr4:54199574-54199593 MsG0480021138.01.T01:five_prime_UTR 45.0%
TCTCTTGCTTCAAGAGGAGT+GGG - Chr4:54207708-54207727 None:intergenic 45.0%
TGCAAGGTCCTTTGGTCAAA+AGG + Chr4:54201825-54201844 MsG0480021138.01.T01:five_prime_UTR 45.0%
TGGCAATGCTATTCAGGTCT+GGG + Chr4:54202992-54203011 MsG0480021138.01.T01:intron 45.0%
TGGTTAGTGGAGGATATACC+AGG - Chr4:54207278-54207297 None:intergenic 45.0%
TTCTCTTGCTTCAAGAGGAG+TGG - Chr4:54207709-54207728 None:intergenic 45.0%
! ATTAGTTTGGTCGCAGTTGG+AGG - Chr4:54205583-54205602 None:intergenic 45.0%
! ATTGACCCTCTGGTTCCAAA+GGG + Chr4:54199272-54199291 MsG0480021138.01.T01:intron 45.0%
! CCAAAGGGGTTCTGATAATC+CGG + Chr4:54199287-54199306 MsG0480021138.01.T01:intron 45.0%
! CCGATCGGTTTCATTCCATT+CGG - Chr4:54199908-54199927 None:intergenic 45.0%
! CGATCGGTTTCATTCCATTC+GGG - Chr4:54199907-54199926 None:intergenic 45.0%
! GCTGATTCTCTTGCTTCAAG+AGG - Chr4:54207714-54207733 None:intergenic 45.0%
! GGTTCTGATAATCCGGAGTT+CGG + Chr4:54199294-54199313 MsG0480021138.01.T01:intron 45.0%
! GTCATTAGTTTGGTCGCAGT+TGG - Chr4:54205586-54205605 None:intergenic 45.0%
! TATTGACCCTCTGGTTCCAA+AGG + Chr4:54199271-54199290 MsG0480021138.01.T01:intron 45.0%
! TCACCTATTGACTGCTCTCT+CGG + Chr4:54204164-54204183 MsG0480021138.01.T01:intron 45.0%
! TTAGTTTGGTCGCAGTTGGA+GGG - Chr4:54205582-54205601 None:intergenic 45.0%
! TTCCTTGTGTGACCGTTTTC+GGG + Chr4:54206676-54206695 MsG0480021138.01.T01:intron 45.0%
!! ACTTGCTGTTGAGAAGCTGT+GGG - Chr4:54199659-54199678 None:intergenic 45.0%
!! AGGAGAATGAGAAGTGCTAC+CGG - Chr4:54206255-54206274 None:intergenic 45.0%
!! AGGTGCATTGGTGACGAAAA+GGG + Chr4:54205166-54205185 MsG0480021138.01.T01:intron 45.0%
!! CACTTCTCCTAGTGTTGCTT+TGG - Chr4:54204836-54204855 None:intergenic 45.0%
!! GAAGCTTTTTCTGGCAGCAA+TGG - Chr4:54199623-54199642 None:intergenic 45.0%
!! GCAAGTTGATTGTGGTTCTG+AGG + Chr4:54200294-54200313 MsG0480021138.01.T01:five_prime_UTR 45.0%
!! TACTTGCTGTTGAGAAGCTG+TGG - Chr4:54199660-54199679 None:intergenic 45.0%
!! TCTCGAACCGAAGCTTTTTC+TGG - Chr4:54199632-54199651 None:intergenic 45.0%
!! TTGCTATTGGCGGATTACTC+AGG + Chr4:54201324-54201343 MsG0480021138.01.T01:intron 45.0%
!!! GACTTCAGAATTTTGGCTGG+AGG - Chr4:54200594-54200613 None:intergenic 45.0%
!!! TTTTTTTTCTTCGAGGGGCC+GGG + Chr4:54206474-54206493 MsG0480021138.01.T01:intron 45.0%
!!! AATTTAAAATATAAATATGT+TGG + Chr4:54206068-54206087 MsG0480021138.01.T01:intron 5.0%
!!! ATTTAAAATATAAATATGTT+GGG + Chr4:54206069-54206088 MsG0480021138.01.T01:intron 5.0%
AACAAAGCCTCCCCCTTAAG+AGG + Chr4:54205814-54205833 MsG0480021138.01.T01:intron 50.0%
ACTGTAGGGACTAGGGATCA+AGG - Chr4:54202320-54202339 None:intergenic 50.0%
AGAGCAATAGCTCAGTCGGA+AGG - Chr4:54203895-54203914 None:intergenic 50.0%
AGGAAAAGGGAGTTGGGAGA+GGG - Chr4:54205550-54205569 None:intergenic 50.0%
AGGATGCTCAACGGTAAAGG+CGG + Chr4:54203448-54203467 MsG0480021138.01.T01:CDS 50.0%
AGTCGGAAGGGAAAACTCTG+GGG - Chr4:54203882-54203901 None:intergenic 50.0%
AGTCGGGTATTCTGCTGTGA+AGG + Chr4:54200706-54200725 MsG0480021138.01.T01:five_prime_UTR 50.0%
AGTGAGACTGTACGAGCAAC+AGG - Chr4:54202445-54202464 None:intergenic 50.0%
AGTTGGGAGAGGGTTACCAA+AGG - Chr4:54205540-54205559 None:intergenic 50.0%
ATGGGCCATCCCTCGATATT+AGG - Chr4:54200464-54200483 None:intergenic 50.0%
ATTGACCAGACACCGAACTC+CGG - Chr4:54199309-54199328 None:intergenic 50.0%
CAGTCGGAAGGGAAAACTCT+GGG - Chr4:54203883-54203902 None:intergenic 50.0%
CCGGATTATCAGAACCCCTT+TGG - Chr4:54199290-54199309 None:intergenic 50.0%
CTCCCAGTCAATCAATCAGG+AGG + Chr4:54201245-54201264 MsG0480021138.01.T01:five_prime_UTR 50.0%
CTCTATCTTGCGCTGCTGAA+GGG - Chr4:54204299-54204318 None:intergenic 50.0%
CTGGAATGCCTTACGGAAAC+AGG - Chr4:54201406-54201425 None:intergenic 50.0%
CTGGCAATGCTATTCAGGTC+TGG + Chr4:54202991-54203010 MsG0480021138.01.T01:intron 50.0%
CTTCAGCAGCGCAAGATAGA+GGG + Chr4:54204298-54204317 MsG0480021138.01.T01:CDS 50.0%
GACTCGACAAGGATGCTCAA+CGG + Chr4:54203439-54203458 MsG0480021138.01.T01:CDS 50.0%
GAGCAATAGCTCAGTCGGAA+GGG - Chr4:54203894-54203913 None:intergenic 50.0%
GGGACACAAGTTACCCTCAT+CGG - Chr4:54207688-54207707 None:intergenic 50.0%
GGTATGCATGGCTATGCTCT+TGG + Chr4:54203160-54203179 MsG0480021138.01.T01:intron 50.0%
GTGAGACTGTACGAGCAACA+GGG - Chr4:54202444-54202463 None:intergenic 50.0%
GTGCTCCCAGTCAATCAATC+AGG + Chr4:54201242-54201261 MsG0480021138.01.T01:five_prime_UTR 50.0%
GTTCCATCACTGAGGAGGTA+TGG + Chr4:54200543-54200562 MsG0480021138.01.T01:five_prime_UTR 50.0%
TACCCGAAAACGGTCACACA+AGG - Chr4:54206681-54206700 None:intergenic 50.0%
TCAGTCGGAAGGGAAAACTC+TGG - Chr4:54203884-54203903 None:intergenic 50.0%
TGACCGAGAGAGCAGTCAAT+AGG - Chr4:54204170-54204189 None:intergenic 50.0%
! CTCACAGGGGATTTCTAGGT+TGG + Chr4:54201916-54201935 MsG0480021138.01.T01:intron 50.0%
! GCATAGCTTGCAAGGTCCTT+TGG + Chr4:54201817-54201836 MsG0480021138.01.T01:intron 50.0%
! GCTGTTTGGTTCCATCACTG+AGG + Chr4:54200535-54200554 MsG0480021138.01.T01:five_prime_UTR 50.0%
! GGAGGCACAAAGTTCATGCA+AGG + Chr4:54205848-54205867 MsG0480021138.01.T01:intron 50.0%
! GTTTCCGTAAGGCATTCCAG+TGG + Chr4:54201406-54201425 MsG0480021138.01.T01:intron 50.0%
! GTTTGGTTCCATCACTGAGG+AGG + Chr4:54200538-54200557 MsG0480021138.01.T01:five_prime_UTR 50.0%
! TTGACCCTCTGGTTCCAAAG+GGG + Chr4:54199273-54199292 MsG0480021138.01.T01:intron 50.0%
!! AGAACCCCTTTGGAACCAGA+GGG - Chr4:54199280-54199299 None:intergenic 50.0%
!! AGGGGATTTCTAGGTTGGTG+CGG + Chr4:54201921-54201940 MsG0480021138.01.T01:intron 50.0%
!! ATAATCCGGAGTTCGGTGTC+TGG + Chr4:54199301-54199320 MsG0480021138.01.T01:intron 50.0%
!! GAGGTGCATTGGTGACGAAA+AGG + Chr4:54205165-54205184 MsG0480021138.01.T01:intron 50.0%
!! GGTTCTGAGGCCACCTTTAT+TGG + Chr4:54200307-54200326 MsG0480021138.01.T01:five_prime_UTR 50.0%
!! GTTCTGGATGCTGTTTCCTG+TGG - Chr4:54200247-54200266 None:intergenic 50.0%
!! TGGCTCTGGCAATGCTATTC+AGG + Chr4:54202986-54203005 MsG0480021138.01.T01:CDS 50.0%
!!! TTTTTTTCTTCGAGGGGCCG+GGG + Chr4:54206475-54206494 MsG0480021138.01.T01:intron 50.0%
CAGTTGGACGATCACTCCTG+TGG + Chr4:54201856-54201875 MsG0480021138.01.T01:five_prime_UTR 55.0%
CCTCTATCTTGCGCTGCTGA+AGG - Chr4:54204300-54204319 None:intergenic 55.0%
CCTTCAGCAGCGCAAGATAG+AGG + Chr4:54204297-54204316 MsG0480021138.01.T01:CDS 55.0%
GAGGAAAAGGGAGTTGGGAG+AGG - Chr4:54205551-54205570 None:intergenic 55.0%
GGACCATACCTCCTCAGTGA+TGG - Chr4:54200549-54200568 None:intergenic 55.0%
GGTTAATGACTTTCGGCGCC+TGG + Chr4:54207257-54207276 MsG0480021138.01.T01:intron 55.0%
GTCGGAAGGGAAAACTCTGG+GGG - Chr4:54203881-54203900 None:intergenic 55.0%
TCTGCTGTGAAGGAAGCTGC+AGG + Chr4:54200716-54200735 MsG0480021138.01.T01:five_prime_UTR 55.0%
TGTATGGCTGCACGCTTGCA+TGG + Chr4:54202465-54202484 MsG0480021138.01.T01:intron 55.0%
TTGGACGATCACTCCTGTGG+TGG + Chr4:54201859-54201878 MsG0480021138.01.T01:five_prime_UTR 55.0%
!! CAGAACCCCTTTGGAACCAG+AGG - Chr4:54199281-54199300 None:intergenic 55.0%
!! GGCGGATTACTCAGGTCTCA+AGG + Chr4:54201332-54201351 MsG0480021138.01.T01:intron 55.0%
! CACTGAGGAGGTATGGTCCG+TGG + Chr4:54200550-54200569 MsG0480021138.01.T01:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 54198975 54207785 54198975 ID=MsG0480021138.01;Name=MsG0480021138.01
Chr4 mRNA 54198975 54207785 54198975 ID=MsG0480021138.01.T01;Parent=MsG0480021138.01;Name=MsG0480021138.01.T01;_AED=0.40;_eAED=0.40;_QI=1114|0.87|0.88|1|0.62|0.44|9|0|269
Chr4 exon 54201151 54201301 54201151 ID=MsG0480021138.01.T01:exon:28749;Parent=MsG0480021138.01.T01
Chr4 exon 54201823 54201933 54201823 ID=MsG0480021138.01.T01:exon:28750;Parent=MsG0480021138.01.T01
Chr4 exon 54202648 54203007 54202648 ID=MsG0480021138.01.T01:exon:28751;Parent=MsG0480021138.01.T01
Chr4 exon 54203427 54203666 54203427 ID=MsG0480021138.01.T01:exon:28752;Parent=MsG0480021138.01.T01
Chr4 exon 54204295 54204364 54204295 ID=MsG0480021138.01.T01:exon:28753;Parent=MsG0480021138.01.T01
Chr4 exon 54207595 54207785 54207595 ID=MsG0480021138.01.T01:exon:28754;Parent=MsG0480021138.01.T01
Chr4 five_prime_UTR 54198975 54199078 54198975 ID=MsG0480021138.01.T01:five_prime_utr;Parent=MsG0480021138.01.T01
Chr4 five_prime_UTR 54199521 54199691 54199521 ID=MsG0480021138.01.T01:five_prime_utr;Parent=MsG0480021138.01.T01
Chr4 five_prime_UTR 54200212 54200737 54200212 ID=MsG0480021138.01.T01:five_prime_utr;Parent=MsG0480021138.01.T01
Chr4 five_prime_UTR 54201151 54201301 54201151 ID=MsG0480021138.01.T01:five_prime_utr;Parent=MsG0480021138.01.T01
Chr4 five_prime_UTR 54201823 54201933 54201823 ID=MsG0480021138.01.T01:five_prime_utr;Parent=MsG0480021138.01.T01
Chr4 five_prime_UTR 54202648 54202698 54202648 ID=MsG0480021138.01.T01:five_prime_utr;Parent=MsG0480021138.01.T01
Chr4 CDS 54202699 54203007 54202699 ID=MsG0480021138.01.T01:cds;Parent=MsG0480021138.01.T01
Chr4 CDS 54203427 54203666 54203427 ID=MsG0480021138.01.T01:cds;Parent=MsG0480021138.01.T01
Chr4 CDS 54204295 54204364 54204295 ID=MsG0480021138.01.T01:cds;Parent=MsG0480021138.01.T01
Chr4 CDS 54207595 54207785 54207595 ID=MsG0480021138.01.T01:cds;Parent=MsG0480021138.01.T01
Chr4 mRNA 54198975 54201368 54198975 ID=MsG0480021138.01.T02;Parent=MsG0480021138.01;Name=MsG0480021138.01.T02;_AED=0.45;_eAED=0.48;_QI=134|1|0.75|1|0.66|0.5|4|0|294
Chr4 exon 54201151 54201368 54201151 ID=MsG0480021138.01.T02:exon:28755;Parent=MsG0480021138.01.T02
Chr4 five_prime_UTR 54198975 54199078 54198975 ID=MsG0480021138.01.T02:five_prime_utr;Parent=MsG0480021138.01.T02
Chr4 five_prime_UTR 54199521 54199550 54199521 ID=MsG0480021138.01.T02:five_prime_utr;Parent=MsG0480021138.01.T02
Chr4 CDS 54199551 54199691 54199551 ID=MsG0480021138.01.T02:cds;Parent=MsG0480021138.01.T02
Chr4 CDS 54200212 54200737 54200212 ID=MsG0480021138.01.T02:cds;Parent=MsG0480021138.01.T02
Chr4 CDS 54201151 54201368 54201151 ID=MsG0480021138.01.T02:cds;Parent=MsG0480021138.01.T02
Gene Sequence

>MsG0480021138.01.T02

ATGGCTGTTTCATCAGATGTGTGTCCAACTGAGGATGCAATTCAGGTTTTTCTACAACATTTGGTTGATCCATTGCTGCCAGAAAAAGCTTCGGTTCGAGATAATCCCACAGCTTCTCAACAGCAAGTAATTGCCAAACAGGTGCATTCTGTTGTCTTGTTGTACAACTACTACCACAGGAAACAGCATCCAGAACTAGAATATCTGCCATTTAACGAATTTTGCAAGTTGATTGTGGTTCTGAGGCCACCTTTATTGGCATATATGAAATTCATGCAAAAGATAAATGAAGTAGAGCTCATAGATGTGGAGAAGCAGCTATCATTGACAGAAAAAGGGATTATGGATGCATGTGATATCTGTAACTGTTTAGATGCATCAAAGAATGTTCCTAATATCGAGGGATGGCCCATATCGAAAGTTTCTGTCCTTTTAATCGACAGCAAGAAGGAGAACTGCTTTTTGCTGTTTGGTTCCATCACTGAGGAGGTATGGTCCGTGGTTGAAAAAAGTATAGACACCTCCAGCCAAAATTCTGAAGTCTCAACAGAAACAAAAAATACATACAAAAGGAGAAGAGTCATTAGAAAGCCTGCAAAAGATGAAGTAAAAGTTGATGAAGATAGACTTTTGCAAGTCGGGTATTCTGCTGTGAAGGAAGCTGCAGGTATCGATAACACTGATATTATGCTTTTGGGAAGCTACACTGTCTATTCTCAAAGCAAAGAAAAGGAAGCTTCTCGCTTTTATATAATGCAGTGCTCCCAGTCAATCAATCAGGAGGTTATTAAAGTTCCCCTCAAGGATGTAATTGAAAGGTTTGTTTTAATTGTTATCGTTTTGCTATTGGCGGATTACTCAGGTCTCAAGGATGAATGGCATTAA

>MsG0480021138.01.T01

ATGGTCGACAGCCCTGAAGTGACAGAGTCCTATATAAGTAAGGACTTGGATTCTGGTATTTATAGTAAACCAAGTGAGGGTGATATTGAAATGCATGAGCAGAAAGAGAACAATGGAAGTTGTACACTTAGACCATGTGATTCTATCATGGAGACCCATGAAATGGATGTGAACAAATCTTCAATTTATCCATCTCAAAATAAAGAAAAATGCCAGAAGATCACCAATGCTATACAATTTGGTGAACATCAGGAAGAAAACAATCCATCTGTGCAGTTTAAATCCAATGGCTCTGGCAATGCTATTCAGGCTATGAAGATTGACTCGACAAGGATGCTCAACGGTAAAGGCGGAGTCAACAATATTGCTTCTTGCAGCAAACTTTGTGCTAATAAGCCAAATACCTCATATGAAAAAGACACAAAAGGTGCATGTACTCCAAGTTCAAATCATTCTAACTCAGATAAAGAGAAACCCCAAAGTCTTCAAGATTCAAAGAAGAGACTGCGAACTGCTATATCTTCTCTAATAAGAAAGAGGAATGAGCTGGCCCTTCAGCAGCGCAAGATAGAGGGTGAGATCGCTAGTGTTGATGAACAAATTCTGAGAATGTTAACTGATCTGAATTATCATTTCATTTTGATTGATGTTTCTTTTGAAGGTGGATTGCAAGCCAATGTAACTGTTAATATAAACAAGTTTAAGTGTTCCGATGAGGGTAACTTGTGTCCCACTCCTCTTGAAGCAAGAGAATCAGCTGCTGCTAAGATGTTGAATAAACTGAGAAGTATGGGAATATTAACCAAGTAA

Protein sequence

>MsG0480021138.01.T02

MAVSSDVCPTEDAIQVFLQHLVDPLLPEKASVRDNPTASQQQVIAKQVHSVVLLYNYYHRKQHPELEYLPFNEFCKLIVVLRPPLLAYMKFMQKINEVELIDVEKQLSLTEKGIMDACDICNCLDASKNVPNIEGWPISKVSVLLIDSKKENCFLLFGSITEEVWSVVEKSIDTSSQNSEVSTETKNTYKRRRVIRKPAKDEVKVDEDRLLQVGYSAVKEAAGIDNTDIMLLGSYTVYSQSKEKEASRFYIMQCSQSINQEVIKVPLKDVIERFVLIVIVLLLADYSGLKDEWH*

>MsG0480021138.01.T01

MVDSPEVTESYISKDLDSGIYSKPSEGDIEMHEQKENNGSCTLRPCDSIMETHEMDVNKSSIYPSQNKEKCQKITNAIQFGEHQEENNPSVQFKSNGSGNAIQAMKIDSTRMLNGKGGVNNIASCSKLCANKPNTSYEKDTKGACTPSSNHSNSDKEKPQSLQDSKKRLRTAISSLIRKRNELALQQRKIEGEIASVDEQILRMLTDLNYHFILIDVSFEGGLQANVTVNINKFKCSDEGNLCPTPLEARESAAAKMLNKLRSMGILTK*