AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0100590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100590 MtrunA17_Chr1g0149061 96.891 772 24 0 1 772 1 772 0.0 1449
Msa0100590 MtrunA17_Chr3g0138061 77.727 220 48 1 1 219 4 223 1.07e-120 384
Msa0100590 MtrunA17_Chr7g0260441 60.920 174 67 1 1 173 1 174 4.52e-66 231
Msa0100590 MtrunA17_Chr7g0260441 39.474 266 93 12 550 771 407 648 1.52e-18 90.5
Msa0100590 MtrunA17_Chr4g0038431 55.030 169 74 2 6 173 3 170 1.87e-52 179
Msa0100590 MtrunA17_Chr3g0113441 54.819 166 73 2 9 173 66 230 1.43e-49 174
Msa0100590 MtrunA17_Chr7g0274841 50.888 169 81 2 6 173 3 170 5.01e-49 170
Msa0100590 MtrunA17_Chr4g0045321 52.096 167 78 2 9 173 6 172 5.37e-49 176
Msa0100590 MtrunA17_Chr3g0104751 54.217 166 74 2 9 173 36 200 7.98e-48 168
Msa0100590 MtrunA17_Chr8g0374621 50.575 174 82 3 6 176 3 175 3.77e-46 169
Msa0100590 MtrunA17_Chr3g0145501 46.927 179 93 2 9 186 14 191 4.80e-46 162
Msa0100590 MtrunA17_Chr7g0270991 44.262 183 86 4 1 178 90 261 5.31e-39 145
Msa0100590 MtrunA17_Chr8g0353571 44.186 172 90 4 5 173 16 184 2.78e-37 137
Msa0100590 MtrunA17_Chr1g0193711 45.304 181 88 3 1 178 79 251 1.12e-35 135
Msa0100590 MtrunA17_Chr4g0037281 47.024 168 85 4 9 173 48 214 1.63e-35 134
Msa0100590 MtrunA17_Chr1g0213971 45.294 170 80 4 9 173 79 240 1.43e-33 129
Msa0100590 MtrunA17_Chr8g0351571 38.462 130 66 4 26 153 15 132 9.66e-19 84.0
Msa0100590 MtrunA17_Chr2g0321111 38.462 143 73 5 32 171 482 612 1.22e-17 87.4
Msa0100590 MtrunA17_Chr7g0266721 41.667 132 63 4 26 155 24 143 2.58e-17 80.1
Msa0100590 MtrunA17_Chr5g0401141 38.346 133 68 5 25 155 358 478 7.45e-16 81.6
Msa0100590 MtrunA17_Chr6g0484281 32.484 157 83 5 23 168 12 156 4.20e-14 75.9
Msa0100590 MtrunA17_Chr8g0357591 31.847 157 84 5 23 168 12 156 3.60e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100590 AT4G32420.1 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0100590 AT4G32420.5 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0100590 AT4G32420.3 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0100590 AT4G32420.6 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0100590 AT4G32420.4 71.875 160 44 1 1 159 1 160 1.79e-75 261
Msa0100590 AT3G63400.2 60.920 174 67 1 1 173 1 174 1.63e-67 228
Msa0100590 AT3G63400.3 60.920 174 67 1 1 173 1 174 2.20e-66 231
Msa0100590 AT3G63400.4 60.920 174 67 1 1 173 1 174 2.20e-66 231
Msa0100590 AT3G63400.1 60.920 174 67 1 1 173 1 174 2.20e-66 231
Msa0100590 AT3G56070.1 53.254 169 77 2 6 173 3 170 1.08e-50 175
Msa0100590 AT3G56070.2 53.254 169 77 2 6 173 3 170 1.08e-50 175
Msa0100590 AT4G38740.1 53.254 169 75 4 7 173 4 170 3.66e-50 174
Msa0100590 AT5G58710.1 53.012 166 76 2 9 173 37 201 7.26e-50 174
Msa0100590 AT2G29960.1 53.614 166 75 2 9 173 34 198 1.94e-49 173
Msa0100590 AT2G29960.3 53.614 166 75 2 9 173 34 198 1.94e-49 173
Msa0100590 AT4G34870.1 50.888 169 81 2 6 173 3 170 1.14e-48 169
Msa0100590 AT2G21130.1 51.479 169 80 2 6 173 4 171 1.29e-48 169
Msa0100590 AT3G55920.1 50.000 166 81 2 9 173 61 225 6.85e-48 169
Msa0100590 AT2G15790.1 52.695 167 77 2 9 173 6 172 1.14e-47 173
Msa0100590 AT2G16600.1 49.112 169 84 2 6 173 4 171 2.45e-45 160
Msa0100590 AT2G29960.2 50.602 166 70 3 9 173 34 188 8.22e-44 157
Msa0100590 AT2G38730.1 47.674 172 84 4 5 173 30 198 7.86e-39 143
Msa0100590 AT3G62030.3 48.630 146 66 2 9 153 96 233 8.63e-38 142
Msa0100590 AT3G62030.1 48.630 146 66 2 9 153 97 234 9.12e-38 142
Msa0100590 AT3G62030.2 48.630 146 66 2 9 153 150 287 1.05e-36 140
Msa0100590 AT4G34960.1 44.444 171 92 3 9 177 49 218 1.95e-36 137
Msa0100590 AT2G16600.2 43.195 169 72 2 6 173 4 149 4.44e-35 130
Msa0100590 AT5G13120.1 43.275 171 82 5 9 173 92 253 2.65e-34 132
Msa0100590 AT5G13120.2 43.275 171 82 5 9 173 88 249 5.39e-34 131
Msa0100590 AT3G22920.1 44.828 174 80 8 6 173 3 166 1.55e-32 126
Msa0100590 AT4G34960.2 48.305 118 59 2 9 125 49 165 7.94e-30 116
Msa0100590 AT4G32420.2 66.154 65 22 0 110 174 1 65 2.42e-22 103
Msa0100590 AT1G01940.1 40.000 130 64 4 26 153 15 132 4.59e-20 88.2
Msa0100590 AT2G36130.1 40.152 132 65 4 26 155 24 143 4.22e-18 82.8
Msa0100590 AT3G44600.1 37.162 148 78 5 27 171 491 626 1.33e-17 87.8
Msa0100590 AT5G67530.1 37.162 148 78 6 25 169 357 492 4.27e-16 82.8
Msa0100590 AT1G53720.1 33.571 140 71 4 23 152 12 139 8.63e-13 72.0
Msa0100590 AT1G53720.2 33.571 140 71 4 23 152 12 139 1.59e-11 67.0

Find 227 sgRNAs with CRISPR-Local

Find 560 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGCTTCCAGCTCATTTA+AGG 0.110768 1_3:-7056304 None:intergenic
GAGATTTGGCCTATCCTTTA+TGG 0.157069 1_3:+7056602 Msa0100590:three_prime_UTR
CTCTTTCTTGACACTCTTAC+AGG 0.211910 1_3:-7055238 None:intergenic
TTGCGAATTGGGCTAGGGCT+TGG 0.226989 1_3:-7056049 None:intergenic
CTTTCTGCTCTCAGATATTC+AGG 0.239140 1_3:+7055679 Msa0100590:intron
TTCTTCCATCAGATCGTAAA+AGG 0.249523 1_3:+7051053 Msa0100590:CDS
GTACCGAATTCGGACCTTTC+AGG 0.264264 1_3:+7056272 Msa0100590:three_prime_UTR
GGAACTCCTGCTGAGACTTC+TGG 0.281243 1_3:-7055290 None:intergenic
TACTACAAGACACTGATAAC+TGG 0.294409 1_3:-7056557 None:intergenic
GAAGAATTCCCAAAAGAAAA+TGG 0.301545 1_3:+7054627 Msa0100590:CDS
CTTCCCCTTCTGATACGTTT+TGG 0.307276 1_3:-7055466 None:intergenic
TTTCCCCTTTCAGGAGAAAA+AGG 0.308702 1_3:+7050987 Msa0100590:intron
TAAAATACCGTTCGTGTGTC+TGG 0.318072 1_3:+7056691 Msa0100590:three_prime_UTR
TGCGAATTGGGCTAGGGCTT+GGG 0.324125 1_3:-7056048 None:intergenic
GGAGGTGAGCGGTTGCGAAT+TGG 0.325475 1_3:-7056061 None:intergenic
GACACTGATAACTGGGGATA+TGG 0.325870 1_3:-7056549 None:intergenic
CTTCACCTTTAGCTTGAATC+AGG 0.326116 1_3:-7056250 None:intergenic
TTGTGTGGTGTCAGGGAATC+AGG 0.326784 1_3:+7053826 Msa0100590:intron
CTCCTGCTTATTCTTCTAAC+AGG 0.326957 1_3:-7054998 None:intergenic
TTCTCCAGGCCTTCTATCTA+TGG 0.340779 1_3:+7052186 Msa0100590:CDS
GAGGTGAGCGGTTGCGAATT+GGG 0.350999 1_3:-7056060 None:intergenic
AGTCCAGTCATCCTCAGTTT+TGG 0.353871 1_3:+7054545 Msa0100590:CDS
ATACTGCTTTACCTGCTTGC+TGG 0.356419 1_3:+7056343 Msa0100590:three_prime_UTR
ATGGCATGTTGAAAGATAAT+AGG 0.357054 1_3:+7056435 Msa0100590:three_prime_UTR
AAGAAAGGCCTGGTCTCTTA+TGG 0.357463 1_3:+7056217 Msa0100590:CDS
AGCATTCTAACCTGGGAACT+TGG 0.364036 1_3:-7052038 None:intergenic
GAAAAGTAAGCAAAGATAAC+AGG 0.371011 1_3:+7056164 Msa0100590:CDS
AATTATCATGCTAACCATAA+AGG 0.371072 1_3:-7056616 None:intergenic
GAGTTTAACTGATGGAGATT+TGG 0.372096 1_3:+7056588 Msa0100590:three_prime_UTR
CTTCTGCTAAACCTCCTCTT+TGG 0.376794 1_3:-7054920 None:intergenic
TGAATGTGTGTTGTTCTCAT+AGG 0.378971 1_3:-7055085 None:intergenic
GGTGTCCTTGCCCTACGAAC+AGG 0.379140 1_3:-7055400 None:intergenic
CTCCCCTTCCTCCCTCTCAC+GGG 0.379675 1_3:-7055046 None:intergenic
TGCCTTTCTTCACTTCTGTC+AGG 0.388286 1_3:-7054687 None:intergenic
TAAAGGTGAAGTACCGAATT+CGG 0.397418 1_3:+7056262 Msa0100590:exon
TTTCCGTCTGAGCTTCTAGA+AGG 0.397442 1_3:-7056196 None:intergenic
CACACATCTATATGGGTCAT+AGG 0.398441 1_3:-7056642 None:intergenic
AAAGGAGTCAGTCCTAATAC+TGG 0.399979 1_3:+7051005 Msa0100590:CDS
GAGCGGTTGCGAATTGGGCT+AGG 0.400236 1_3:-7056055 None:intergenic
GGAGTTCTTCTCCGTGGCGG+TGG 0.402817 1_3:-7055736 None:intergenic
GCCCCGTGAGAGGGAGGAAG+GGG 0.406880 1_3:+7055044 Msa0100590:CDS
AAAGATCATTCTCAGATAGA+TGG 0.415084 1_3:+7053937 Msa0100590:CDS
ACGAACAGGGCTACGACTCC+TGG 0.416701 1_3:-7055386 None:intergenic
AGAATTGAGAATCTACGCTT+TGG 0.417082 1_3:-7048960 None:intergenic
AAGCCCCGTGAGAGGGAGGA+AGG 0.417883 1_3:+7055042 Msa0100590:CDS
CGTAAAAGGCTCCATTGTTA+AGG 0.420698 1_3:+7051067 Msa0100590:CDS
AAAGATACTCTTATGCTAGA+AGG 0.424339 1_3:+7055500 Msa0100590:CDS
GAGATAAACGTCGAGAAAAG+AGG 0.427527 1_3:+7053440 Msa0100590:CDS
TTCCCTGAAAGGTCCGAATT+CGG 0.432085 1_3:-7056275 None:intergenic
ATTGCTGATCGTGACACTCT+TGG 0.435667 1_3:+7052211 Msa0100590:CDS
ATCCTCGTAGTAAGTTGAAA+TGG 0.436312 1_3:+7056416 Msa0100590:three_prime_UTR
GCAATCACCGCAGCTATTCC+AGG 0.436681 1_3:+7055368 Msa0100590:CDS
TCCTCTTTGGACTAATGCTC+GGG 0.437106 1_3:-7054907 None:intergenic
GCTCACCTCCTCGTGTGAAT+AGG 0.442557 1_3:+7056074 Msa0100590:CDS
GAATTGAGAATCTACGCTTT+GGG 0.448105 1_3:-7048959 None:intergenic
AGCCCCGTGAGAGGGAGGAA+GGG 0.450891 1_3:+7055043 Msa0100590:CDS
CTCTTGCTCACGGTTTGCTT+AGG 0.451493 1_3:-7054851 None:intergenic
GGCCTGGTCTCTTATGGAAA+TGG 0.453229 1_3:+7056223 Msa0100590:CDS
CAGCAATCGCCATAGATAGA+AGG 0.454132 1_3:-7052195 None:intergenic
CGGGGATCCTTATGAAAGAA+TGG 0.458164 1_3:+7050610 Msa0100590:CDS
GAATGTGTGTTGTTCTCATA+GGG 0.458247 1_3:-7055084 None:intergenic
CTACGATCGGGACTTCTCAC+AGG 0.459140 1_3:-7055127 None:intergenic
TCGATATTTGCTCGGACGTG+TGG 0.459478 1_3:+7056512 Msa0100590:three_prime_UTR
ACTTCTGTCAGGTCTATAGT+TGG 0.460346 1_3:-7054676 None:intergenic
TACCGAATTCGGACCTTTCA+GGG 0.460747 1_3:+7056273 Msa0100590:three_prime_UTR
GCATTCTAACCTGGGAACTT+GGG 0.462406 1_3:-7052037 None:intergenic
TCTCCCCTTCCTCCCTCTCA+CGG 0.463089 1_3:-7055047 None:intergenic
CCTCTGCTTGCCACTCTGAC+AGG 0.466727 1_3:-7055346 None:intergenic
CTTCTGGCAGATGATCTAAC+TGG 0.466999 1_3:-7055274 None:intergenic
CTGATAACTGGGGATATGGA+TGG 0.468909 1_3:-7056545 None:intergenic
CTCCTCTTTGGACTAATGCT+CGG 0.471032 1_3:-7054908 None:intergenic
GCAGGAGTCCATCTCGATCC+AGG 0.473773 1_3:+7056116 Msa0100590:CDS
AGAAGTCTCAGCAGGAGTTC+CGG 0.476303 1_3:+7055292 Msa0100590:CDS
ATCGCCATAGATAGAAGGCC+TGG 0.476516 1_3:-7052190 None:intergenic
TACCTTCGTGCTCGGTAAGG+TGG 0.478800 1_3:-7056022 None:intergenic
TAGTCATGAAGTGCGGAGAA+AGG 0.479480 1_3:+7053201 Msa0100590:CDS
GGAGACTTTATCAATCGAAA+TGG 0.482357 1_3:+7051400 Msa0100590:CDS
AGTCATGAAGTGCGGAGAAA+GGG 0.483951 1_3:+7053202 Msa0100590:CDS
GCAGCCTAGCAACGGCATCA+AGG 0.484401 1_3:+7054653 Msa0100590:CDS
TTGAAGAAAATTGAAGATGT+AGG 0.484894 1_3:+7052874 Msa0100590:CDS
CCTGTGAGGTACCGCTATAA+TGG 0.487018 1_3:+7055544 Msa0100590:CDS
CGATATTTGCTCGGACGTGT+GGG 0.487868 1_3:+7056513 Msa0100590:three_prime_UTR
ATGGAAGGAATGACCGTGAC+AGG 0.488207 1_3:+7055563 Msa0100590:CDS
TGGAAAATCACTGCACTACA+AGG 0.491246 1_3:+7051025 Msa0100590:CDS
GAGTTCTTCTCCGTGGCGGT+GGG 0.491381 1_3:-7055735 None:intergenic
GGAGGAAAAGAAAGAGATCT+AGG 0.492138 1_3:+7053389 Msa0100590:CDS
GATAAATCAATTCCTAGCAT+TGG 0.493739 1_3:-7056396 None:intergenic
TGTGTCTGGAAGTTTATGTA+TGG 0.494033 1_3:+7056705 Msa0100590:three_prime_UTR
TTATGGACGTGTCTGTAGAC+GGG 0.495599 1_3:+7050591 Msa0100590:CDS
AAGCTGATCACCATCTTGAT+AGG 0.495613 1_3:+7052257 Msa0100590:CDS
ATGATAATCCAGGAAAATCT+AGG 0.495881 1_3:+7054724 Msa0100590:CDS
CTTTGAGAAACAGATCTGGC+AGG 0.498898 1_3:-7055166 None:intergenic
GGAGTCGTAGCCCTGTTCGT+AGG 0.504871 1_3:+7055389 Msa0100590:CDS
TAAGGTGAGGTTTCCCTGAA+AGG 0.506897 1_3:-7056286 None:intergenic
AAACCTCACCTTAAATGAGC+TGG 0.508169 1_3:+7056296 Msa0100590:three_prime_UTR
ACCTTCGTGCTCGGTAAGGT+GGG 0.510824 1_3:-7056021 None:intergenic
AGGCTAAAGCATGATTCTCC+AGG 0.510991 1_3:+7052172 Msa0100590:CDS
GTGCGTCATCATCCCTCAGC+AGG 0.515147 1_3:+7056098 Msa0100590:CDS
AGCGGTTGCGAATTGGGCTA+GGG 0.516195 1_3:-7056054 None:intergenic
CCATTATAGCGGTACCTCAC+AGG 0.516542 1_3:-7055544 None:intergenic
TTTATGGACGTGTCTGTAGA+CGG 0.517412 1_3:+7050590 Msa0100590:CDS
AGCATATACCCCAAGTTCCC+AGG 0.517801 1_3:+7052028 Msa0100590:CDS
AGAAGCTCAGACGGAAAGAA+AGG 0.519047 1_3:+7056202 Msa0100590:CDS
GTGTCCTGCTTCTCCTACTC+CGG 0.520890 1_3:-7055982 None:intergenic
AGAGATCAAAACGTAAATCA+AGG 0.521159 1_3:+7053479 Msa0100590:CDS
TAGTGATTCCACAGAAGACC+TGG 0.522322 1_3:-7056134 None:intergenic
GGTACCGGAGTAGGAGAAGC+AGG 0.524088 1_3:+7055978 Msa0100590:intron
GAGTCGTAGCCCTGTTCGTA+GGG 0.524982 1_3:+7055390 Msa0100590:CDS
TTGGCCTTGATGCCGTTGCT+AGG 0.525249 1_3:-7054657 None:intergenic
GTTCTCCTGATTCAAGCTAA+AGG 0.528237 1_3:+7056245 Msa0100590:CDS
CTATACCTTCGTGCTCGGTA+AGG 0.528467 1_3:-7056025 None:intergenic
AAGTTTGAAAATAACCTTGG+TGG 0.528572 1_3:-7055757 None:intergenic
TGATAACTGGGGATATGGAT+GGG 0.534088 1_3:-7056544 None:intergenic
GTGGGCTCCTAAAACGCCTA+GGG 0.534974 1_3:-7055717 None:intergenic
TCTCCAAAACTGAGGATGAC+TGG 0.537196 1_3:-7054548 None:intergenic
TCAGCAGAAGCCCCGTGAGA+GGG 0.541353 1_3:+7055035 Msa0100590:CDS
AGTAACTAATTCCAGCAAGC+AGG 0.545204 1_3:-7056354 None:intergenic
GACCTGACAGAAGTGAAGAA+AGG 0.545679 1_3:+7054685 Msa0100590:CDS
ATCTCGATCCAGGTCTTCTG+TGG 0.546091 1_3:+7056126 Msa0100590:CDS
CTCAGACGGAAAGAAAGGCC+TGG 0.546220 1_3:+7056207 Msa0100590:CDS
TCTGGAAGTTTATGTATGGA+TGG 0.548483 1_3:+7056709 Msa0100590:three_prime_UTR
AGTAAGTATCGATATTTGCT+CGG 0.548811 1_3:+7056504 Msa0100590:three_prime_UTR
ACTACAAGACACTGATAACT+GGG 0.549548 1_3:-7056556 None:intergenic
CATTCTAACCTGGGAACTTG+GGG 0.552470 1_3:-7052036 None:intergenic
ATTCTTCATAAACCAATGCT+AGG 0.554545 1_3:+7056384 Msa0100590:three_prime_UTR
CATCTGCCAGAAGTCTCAGC+AGG 0.557853 1_3:+7055284 Msa0100590:CDS
GGTGGGCTCCTAAAACGCCT+AGG 0.559539 1_3:-7055718 None:intergenic
AAACGTATCAGAAGGGGAAG+AGG 0.560741 1_3:+7055469 Msa0100590:CDS
CTTCCAGCTCATTTAAGGTG+AGG 0.562565 1_3:-7056299 None:intergenic
ACGGCTTTGAGAAACAGATC+TGG 0.562906 1_3:-7055170 None:intergenic
GCAGAAGCCCCGTGAGAGGG+AGG 0.564588 1_3:+7055038 Msa0100590:CDS
TCCCCTTCCTCCCTCTCACG+GGG 0.567721 1_3:-7055045 None:intergenic
AGATTCCATGTCGGAATCTG+AGG 0.568884 1_3:-7053293 None:intergenic
AACGATAATTCTAACGGCAA+AGG 0.571157 1_3:+7053883 Msa0100590:CDS
GCTACTTAATTTACCTGTCA+CGG 0.571224 1_3:-7055576 None:intergenic
TTGCTAAGACTTCTACGATC+GGG 0.572343 1_3:-7055139 None:intergenic
TGTCAAGAAAGAGCATAAGC+AGG 0.573617 1_3:+7055248 Msa0100590:CDS
AAAGTCCTCGTGCTCTATCG+CGG 0.575279 1_3:+7054957 Msa0100590:CDS
GAAGATGTAGGCAATGAAGA+AGG 0.580162 1_3:+7052886 Msa0100590:CDS
GACACGTCCATAAACACCAT+GGG 0.580289 1_3:-7050581 None:intergenic
ATACTCTAGCAGAACTCCTA+CGG 0.580573 1_3:-7055189 None:intergenic
TCATGCTAACCATAAAGGAT+AGG 0.580961 1_3:-7056611 None:intergenic
TATCGCGGAGGAGTTTGAGC+AGG 0.581388 1_3:+7054972 Msa0100590:CDS
TTGGGCTATACCTTCGTGCT+CGG 0.581450 1_3:-7056030 None:intergenic
GTCAGCAGAAGCCCCGTGAG+AGG 0.581670 1_3:+7055034 Msa0100590:CDS
GCTTCTCAAAGGAACTCGGC+CGG 0.583443 1_3:-7055311 None:intergenic
CTTCACCAAAACGTATCAGA+AGG 0.584180 1_3:+7055461 Msa0100590:CDS
CAAGTTCATCTAGTGATGAC+AGG 0.586648 1_3:+7053365 Msa0100590:CDS
TCGAGATGGACTCCTGCTGA+GGG 0.589178 1_3:-7056110 None:intergenic
TCTCCTTCTAGAAGCTCAGA+CGG 0.589827 1_3:+7056193 Msa0100590:CDS
GTGTCCTTGCCCTACGAACA+GGG 0.590564 1_3:-7055399 None:intergenic
GACGTGATGGATGATAATCC+AGG 0.591026 1_3:+7054714 Msa0100590:CDS
AATACTCATACTCTTGCTCA+CGG 0.593043 1_3:-7054861 None:intergenic
AAAAGCATGAGTTTAACTGA+TGG 0.593260 1_3:+7056580 Msa0100590:three_prime_UTR
ACAGAAGACCTGGATCGAGA+TGG 0.594604 1_3:-7056124 None:intergenic
GGAGAATCATGCTTTAGCCT+AGG 0.596116 1_3:-7052169 None:intergenic
AAGAGTAACGATAATTCTAA+CGG 0.596671 1_3:+7053877 Msa0100590:CDS
TTCACCAAAACGTATCAGAA+GGG 0.600691 1_3:+7055462 Msa0100590:CDS
AACGTCGAGAAAAGAGGCGA+AGG 0.601122 1_3:+7053446 Msa0100590:CDS
CCTGTCAGAGTGGCAAGCAG+AGG 0.601861 1_3:+7055346 Msa0100590:CDS
TAAGCAAAGATAACAGGTCA+AGG 0.602811 1_3:+7056170 Msa0100590:CDS
AATGGAGCGCAGCCTAGCAA+CGG 0.602971 1_3:+7054645 Msa0100590:CDS
ACCTCACAGGAGACCGAGAG+GGG 0.604150 1_3:-7055531 None:intergenic
GTAGCCCTGTTCGTAGGGCA+AGG 0.604255 1_3:+7055395 Msa0100590:CDS
GATAAACAGACCTATCAAGA+TGG 0.604811 1_3:-7052267 None:intergenic
CTATATGTAGGTACCGGAGT+AGG 0.605022 1_3:+7055969 Msa0100590:intron
TTTGAGAAACAGATCTGGCA+GGG 0.605173 1_3:-7055165 None:intergenic
ATCGAGATGGACTCCTGCTG+AGG 0.606352 1_3:-7056111 None:intergenic
AACCATTTCCATAAGAGACC+AGG 0.606821 1_3:-7056225 None:intergenic
GATAACTGGGGATATGGATG+GGG 0.611519 1_3:-7056543 None:intergenic
CTTGCTAAGACTTCTACGAT+CGG 0.613367 1_3:-7055140 None:intergenic
TGAGGTACCGCTATAATGGA+AGG 0.613583 1_3:+7055548 Msa0100590:CDS
GATACAGAAGGTACTCCCCT+AGG 0.614974 1_3:+7055701 Msa0100590:CDS
CATCTAGTGATGACAGGCGG+AGG 0.620885 1_3:+7053371 Msa0100590:CDS
AGAAAGGCAGCATGACGTGA+TGG 0.628293 1_3:+7054701 Msa0100590:CDS
GCCCGAGCATTAGTCCAAAG+AGG 0.628924 1_3:+7054906 Msa0100590:CDS
CTGGAAGTTTATGTATGGAT+GGG 0.629122 1_3:+7056710 Msa0100590:three_prime_UTR
TACGATCGGGACTTCTCACA+GGG 0.630815 1_3:-7055126 None:intergenic
CGAGCATTAGTCCAAAGAGG+AGG 0.631871 1_3:+7054909 Msa0100590:CDS
TTGCCACTCTGACAGGACTT+CGG 0.633300 1_3:-7055339 None:intergenic
TCAGATATTCAGGATACAGA+AGG 0.633643 1_3:+7055689 Msa0100590:intron
GATCTGTTTCTCAAAGCCGT+AGG 0.636621 1_3:+7055173 Msa0100590:CDS
TACCTCACAGGAGACCGAGA+GGG 0.636761 1_3:-7055532 None:intergenic
GGGCAAGGACACCTCGTGGG+AGG 0.636939 1_3:+7055410 Msa0100590:CDS
GTCCTGTTAGAAGAATAAGC+AGG 0.637563 1_3:+7054996 Msa0100590:CDS
GGTGGAGTTCTTCTCCGTGG+CGG 0.641967 1_3:-7055739 None:intergenic
CATCACGAAGAACAGTCAGT+AGG 0.643686 1_3:+7055212 Msa0100590:CDS
GGAAAATCACTGCACTACAA+GGG 0.644386 1_3:+7051026 Msa0100590:CDS
TAATGCTTCTCAAAGGAACT+CGG 0.644665 1_3:-7055315 None:intergenic
CTCCTCCGCGATAGAGCACG+AGG 0.645637 1_3:-7054962 None:intergenic
AGGAAAGATAAACATAGACA+TGG 0.646477 1_3:+7053409 Msa0100590:CDS
GGTCATTCCTTCCATTATAG+CGG 0.649077 1_3:-7055555 None:intergenic
TACGACTCCTGGAATAGCTG+CGG 0.649288 1_3:-7055375 None:intergenic
TCACCAAAACGTATCAGAAG+GGG 0.649609 1_3:+7055463 Msa0100590:CDS
GGTGGGCTTCGTGATATAGA+CGG 0.650609 1_3:-7056004 None:intergenic
CGTAGGGCAAGGACACCTCG+TGG 0.652658 1_3:+7055406 Msa0100590:CDS
CTTCGGCTAATGCTTCTCAA+AGG 0.656324 1_3:-7055322 None:intergenic
ACTGTCAAAATAATTAATTG+TGG 0.662678 1_3:+7052922 Msa0100590:CDS
TATGGACGTGTCTGTAGACG+GGG 0.663263 1_3:+7050592 Msa0100590:CDS
CTTGGTGGAGTTCTTCTCCG+TGG 0.663626 1_3:-7055742 None:intergenic
AGACACGTCCATAAACACCA+TGG 0.666006 1_3:-7050582 None:intergenic
TGAACTTGTGTAAGATGACG+AGG 0.669193 1_3:-7053350 None:intergenic
AGGTTTAGCAGAAGTCCAAG+TGG 0.670229 1_3:+7054929 Msa0100590:CDS
TAGCCGAAGTCCTGTCAGAG+TGG 0.673404 1_3:+7055336 Msa0100590:CDS
ACTTTCAGAAGATTCCATGT+CGG 0.675815 1_3:-7053302 None:intergenic
TATTCACACGAGGAGGTGAG+CGG 0.678307 1_3:-7056072 None:intergenic
TAATTGTGGTGAACACAATG+AGG 0.680177 1_3:+7052936 Msa0100590:CDS
TGGGCTCCTAAAACGCCTAG+GGG 0.681447 1_3:-7055716 None:intergenic
TAACTCTTTCTCCAAAACTG+AGG 0.688409 1_3:-7054556 None:intergenic
GTCCTCGTGCTCTATCGCGG+AGG 0.692339 1_3:+7054960 Msa0100590:CDS
TAGTTCCTCAGATTCCGACA+TGG 0.693411 1_3:+7053288 Msa0100590:CDS
AATTGTGGTGAACACAATGA+GGG 0.693875 1_3:+7052937 Msa0100590:CDS
TAAACTTCCAGACACACGAA+CGG 0.695383 1_3:-7056698 None:intergenic
GTAGGGCAAGGACACCTCGT+GGG 0.696905 1_3:+7055407 Msa0100590:CDS
GCACGCCTATTCACACGAGG+AGG 0.702677 1_3:-7056079 None:intergenic
GTACCTCACAGGAGACCGAG+AGG 0.704520 1_3:-7055533 None:intergenic
TGCCATTTCAACTTACTACG+AGG 0.709927 1_3:-7056418 None:intergenic
CTACAAGACACTGATAACTG+GGG 0.710341 1_3:-7056555 None:intergenic
GATCAAAACGTAAATCAAGG+AGG 0.710356 1_3:+7053482 Msa0100590:CDS
AAGCAAATAGTCATGAAGTG+CGG 0.712374 1_3:+7053194 Msa0100590:CDS
GTTCATCTAGTGATGACAGG+CGG 0.717464 1_3:+7053368 Msa0100590:CDS
CCTCACAGGAGACCGAGAGG+GGG 0.726559 1_3:-7055530 None:intergenic
TTCGACAGACTCCTCCCACG+AGG 0.730211 1_3:-7055421 None:intergenic
GCCCACCTTACCGAGCACGA+AGG 0.735674 1_3:+7056020 Msa0100590:CDS
ACACGTCCATAAACACCATG+GGG 0.743718 1_3:-7050580 None:intergenic
CACGGAGAAGAACTCCACCA+AGG 0.743784 1_3:+7055743 Msa0100590:CDS
GACGCACGCCTATTCACACG+AGG 0.756690 1_3:-7056082 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGTTTAAGATTTA+TGG + chr1_3:7053520-7053539 Msa0100590:intron 10.0%
!! TTAAATTCTAATTAATACTA+AGG + chr1_3:7055608-7055627 Msa0100590:intron 10.0%
!!! AATTTTTTTTTTAAACTTCT+AGG + chr1_3:7055794-7055813 Msa0100590:intron 10.0%
!! TTCAATTGTTAAAACAATAA+GGG - chr1_3:7049917-7049936 None:intergenic 15.0%
!! ATTCAATTGTTAAAACAATA+AGG - chr1_3:7049918-7049937 None:intergenic 15.0%
!! AACAATTGAATATAAAATTG+TGG + chr1_3:7049927-7049946 Msa0100590:intron 15.0%
!! TTAAAATTAATAGTAAGTCA+CGG - chr1_3:7051692-7051711 None:intergenic 15.0%
!! AGTCAAATTATTATAAAAAG+AGG - chr1_3:7052523-7052542 None:intergenic 15.0%
!!! ATTAATTATTTTGACAGTTA+CGG - chr1_3:7052920-7052939 None:intergenic 15.0%
!! GAGATAAAAAAAAAAATTGA+AGG - chr1_3:7054029-7054048 None:intergenic 15.0%
!! GGTATAAAAAATGTTTATGT+TGG - chr1_3:7048941-7048960 None:intergenic 20.0%
!! TATAAAAACGAAAACGAAAT+TGG - chr1_3:7049136-7049155 None:intergenic 20.0%
!!! TTTTTCAATTGATAACTGTT+AGG + chr1_3:7049347-7049366 Msa0100590:intron 20.0%
!!! ATGAATAAGGTATTCTTTAT+AGG + chr1_3:7049417-7049436 Msa0100590:intron 20.0%
!!! TAAAACAGTTTAAGACATAA+CGG - chr1_3:7049823-7049842 None:intergenic 20.0%
!!! GTTTTCTAATTTTAGATTGT+TGG + chr1_3:7050504-7050523 Msa0100590:intron 20.0%
!!! TTTTAGATTGTTGGTTAATT+TGG + chr1_3:7050513-7050532 Msa0100590:intron 20.0%
!!! AAATCAGTTATTTGTTGATT+AGG - chr1_3:7050939-7050958 None:intergenic 20.0%
!! TGACACATTTCAAAAAAAAA+GGG - chr1_3:7050967-7050986 None:intergenic 20.0%
!! ATGACACATTTCAAAAAAAA+AGG - chr1_3:7050968-7050987 None:intergenic 20.0%
!!! CTTCCATCTATATTATTTTT+TGG + chr1_3:7051106-7051125 Msa0100590:intron 20.0%
!! CTACCAAAAAATAATATAGA+TGG - chr1_3:7051112-7051131 None:intergenic 20.0%
!!! ACTGTCTTTTTTTTTTTTTG+TGG + chr1_3:7051148-7051167 Msa0100590:intron 20.0%
!!! TTTTTTTTTGTGGTTGAAAA+TGG + chr1_3:7051158-7051177 Msa0100590:intron 20.0%
!!! TTTCTTGTGATATAGTTTTA+AGG + chr1_3:7051256-7051275 Msa0100590:intron 20.0%
!! GAAAAATAATTCACAATATG+AGG - chr1_3:7051447-7051466 None:intergenic 20.0%
!!! TTTGAAATCATGTAATGTTT+TGG + chr1_3:7051783-7051802 Msa0100590:intron 20.0%
!! ACTGTCAAAATAATTAATTG+TGG + chr1_3:7052922-7052941 Msa0100590:CDS 20.0%
!!! ACATTTCATCAAACTTTTAA+AGG + chr1_3:7053044-7053063 Msa0100590:intron 20.0%
!!! TTCGTATTTTTTGTTTTAGA+TGG + chr1_3:7053127-7053146 Msa0100590:intron 20.0%
!! TATATAACTGACATACTAAT+AGG - chr1_3:7053633-7053652 None:intergenic 20.0%
!! TATTAGTATGTCAGTTATAT+AGG + chr1_3:7053632-7053651 Msa0100590:intron 20.0%
!!! ACTTTGATTAACAATTTTGA+TGG + chr1_3:7053786-7053805 Msa0100590:intron 20.0%
!! AGGATTGACAAATAATTTAT+TGG - chr1_3:7054009-7054028 None:intergenic 20.0%
!! AGTATGTTAAAACTTAACTT+CGG - chr1_3:7054423-7054442 None:intergenic 20.0%
!! CTATAAAATATCATAGAATG+AGG - chr1_3:7054451-7054470 None:intergenic 20.0%
!! TAATTAATACTAAGGTAGTA+TGG + chr1_3:7055616-7055635 Msa0100590:intron 20.0%
!!! ATTTTTACGAAAGTACGAAA+CGG + chr1_3:7049231-7049250 Msa0100590:intron 25.0%
! AAACACTAAACTAACAGAAA+GGG - chr1_3:7049329-7049348 None:intergenic 25.0%
! AAAACACTAAACTAACAGAA+AGG - chr1_3:7049330-7049349 None:intergenic 25.0%
!!! GCTATTTTTATAAGCTATGT+CGG + chr1_3:7049670-7049689 Msa0100590:intron 25.0%
!!! TAAGTTTTGTGAGAATGTTT+TGG - chr1_3:7049761-7049780 None:intergenic 25.0%
!! AAAACAGTTTAAGACATAAC+GGG - chr1_3:7049822-7049841 None:intergenic 25.0%
!!! ATGTCTTAAACTGTTTTAAC+AGG + chr1_3:7049825-7049844 Msa0100590:intron 25.0%
!!! TAAGTTTTGTGAGACTATTT+GGG - chr1_3:7049856-7049875 None:intergenic 25.0%
!!! TTAAGTTTTGTGAGACTATT+TGG - chr1_3:7049857-7049876 None:intergenic 25.0%
! TGTAAATCAAGATTTCATTG+CGG - chr1_3:7050018-7050037 None:intergenic 25.0%
! ATTTGATTCAGCGTTTATTT+AGG + chr1_3:7050252-7050271 Msa0100590:intron 25.0%
!! AATTTCCTGTTATCTTGTTT+CGG + chr1_3:7050289-7050308 Msa0100590:intron 25.0%
! TTCACAAGTTATAACTACAA+TGG - chr1_3:7050321-7050340 None:intergenic 25.0%
! TTGACTAGTAAGAAAAACTA+TGG + chr1_3:7050544-7050563 Msa0100590:exon 25.0%
! TCAAAAACCATTCTTTCATA+AGG - chr1_3:7050620-7050639 None:intergenic 25.0%
!! TTATGAAAGAATGGTTTTTG+AGG + chr1_3:7050619-7050638 Msa0100590:CDS 25.0%
!!! AATACCATTAGGTTGAATAT+TGG - chr1_3:7050683-7050702 None:intergenic 25.0%
! ATGCAAATCAAATGTATTAC+CGG - chr1_3:7050773-7050792 None:intergenic 25.0%
! ACATTTCAAAAAAAAAGGGA+AGG - chr1_3:7050963-7050982 None:intergenic 25.0%
! GTAAAAACATACCTTAACAA+TGG - chr1_3:7051081-7051100 None:intergenic 25.0%
! AATAATGCACACAAATAATC+TGG - chr1_3:7051333-7051352 None:intergenic 25.0%
! AATTTGAGTGTGTGTATTAA+TGG + chr1_3:7051355-7051374 Msa0100590:intron 25.0%
!!! ATTATTTTTCCACCTTTTGA+AGG + chr1_3:7051457-7051476 Msa0100590:intron 25.0%
! ATCAAATTGAAACCTTCAAA+AGG - chr1_3:7051472-7051491 None:intergenic 25.0%
!! ATATGCATAGTCAATTTTGA+AGG + chr1_3:7051495-7051514 Msa0100590:intron 25.0%
!!! AGCGATTTGATTTTCTAATT+TGG + chr1_3:7051643-7051662 Msa0100590:intron 25.0%
!!! GCGATTTGATTTTCTAATTT+GGG + chr1_3:7051644-7051663 Msa0100590:intron 25.0%
!!! TTCTAATTTGGGTTAGTTTT+TGG + chr1_3:7051655-7051674 Msa0100590:intron 25.0%
!! GAACTCTTTTTACATTACAT+TGG - chr1_3:7051840-7051859 None:intergenic 25.0%
!! AAATCCATGTAAGATGTTTT+TGG + chr1_3:7052424-7052443 Msa0100590:intron 25.0%
!!! TTTTGAAACATACACTCAAA+TGG + chr1_3:7052597-7052616 Msa0100590:intron 25.0%
! TTGAAGAAAATTGAAGATGT+AGG + chr1_3:7052874-7052893 Msa0100590:CDS 25.0%
! TTTATCATCACTCATATGAA+GGG - chr1_3:7053002-7053021 None:intergenic 25.0%
! ATTTATCATCACTCATATGA+AGG - chr1_3:7053003-7053022 None:intergenic 25.0%
!!! TTATTTATTTTCCCTCTTCA+AGG + chr1_3:7053084-7053103 Msa0100590:intron 25.0%
! ATACGAAGATTCAAATAAAC+AGG - chr1_3:7053114-7053133 None:intergenic 25.0%
! AAGAGTAACGATAATTCTAA+CGG + chr1_3:7053877-7053896 Msa0100590:CDS 25.0%
! TACATATCAACAAAAAGTGA+AGG - chr1_3:7053975-7053994 None:intergenic 25.0%
!!! TTATATTTTAGGAATTGGCT+TGG - chr1_3:7054062-7054081 None:intergenic 25.0%
!!! CTAGCTTATATTTTAGGAAT+TGG - chr1_3:7054067-7054086 None:intergenic 25.0%
!!! CAACATCTAGCTTATATTTT+AGG - chr1_3:7054073-7054092 None:intergenic 25.0%
! AAATATAAGCTAGATGTTGT+TGG + chr1_3:7054074-7054093 Msa0100590:intron 25.0%
! AATATAAGCTAGATGTTGTT+GGG + chr1_3:7054075-7054094 Msa0100590:intron 25.0%
! ATTTACATGTAAAACGACAA+TGG - chr1_3:7054144-7054163 None:intergenic 25.0%
! TTTACATGTAAATGTAATCG+TGG + chr1_3:7054151-7054170 Msa0100590:intron 25.0%
! AAAGAGAAAAAAAAATCAGC+AGG - chr1_3:7054210-7054229 None:intergenic 25.0%
!! TCTTGATTATACTTTGTTTG+TGG + chr1_3:7054254-7054273 Msa0100590:intron 25.0%
! CAATAGAAAGCAAGAAAAAA+GGG - chr1_3:7054283-7054302 None:intergenic 25.0%
! ACAAGTAAAATTTCATTTGC+TGG + chr1_3:7054371-7054390 Msa0100590:intron 25.0%
! TTTGAATAAAATACCAGATC+TGG - chr1_3:7054803-7054822 None:intergenic 25.0%
! ATCAAGTTTGAAAATAACCT+TGG - chr1_3:7055763-7055782 None:intergenic 25.0%
! ATGCTATCATTATTATTCAG+TGG - chr1_3:7055899-7055918 None:intergenic 25.0%
!!! TTATCTTTGCTTACTTTTCT+TGG - chr1_3:7056163-7056182 None:intergenic 25.0%
! AATTATCATGCTAACCATAA+AGG - chr1_3:7056619-7056638 None:intergenic 25.0%
!! CAATTTTCACACATCTATAT+GGG - chr1_3:7056652-7056671 None:intergenic 25.0%
!! ACAATTTTCACACATCTATA+TGG - chr1_3:7056653-7056672 None:intergenic 25.0%
!!! TTATTTTTGATGCTTTCAGA+TGG + chr1_3:7056740-7056759 Msa0100590:three_prime_UTR 25.0%
CACTCAATTGAAGATTATTG+TGG + chr1_3:7049208-7049227 Msa0100590:intron 30.0%
GATAACTGTTAGGTTATGTT+TGG + chr1_3:7049357-7049376 Msa0100590:intron 30.0%
! AACAACTTATTTGCTGCTTA+TGG + chr1_3:7049383-7049402 Msa0100590:intron 30.0%
!! GCTATTTTCATCAACTATCT+TGG + chr1_3:7049482-7049501 Msa0100590:intron 30.0%
AATAAGGTGAAAACAGCTTA+TGG + chr1_3:7049517-7049536 Msa0100590:intron 30.0%
GATAAGTTGTTTATCCAAAC+AGG - chr1_3:7049551-7049570 None:intergenic 30.0%
GTTTGGATAAACAACTTATC+TGG + chr1_3:7049551-7049570 Msa0100590:intron 30.0%
CTTATGCTTATCATGATAAG+TGG + chr1_3:7049576-7049595 Msa0100590:intron 30.0%
TCAAATAAGCCAATTCAAAC+AGG + chr1_3:7049796-7049815 Msa0100590:intron 30.0%
GTAAATCAAGATTTCATTGC+GGG - chr1_3:7050017-7050036 None:intergenic 30.0%
! TTCAGCGTTTATTTAGGATA+AGG + chr1_3:7050258-7050277 Msa0100590:intron 30.0%
! GTAGTTATAACTTGTGAAGT+CGG + chr1_3:7050323-7050342 Msa0100590:intron 30.0%
CTTTCCAATATTCAACCTAA+TGG + chr1_3:7050676-7050695 Msa0100590:intron 30.0%
! GTTATTTGTTGATTAGGAAG+AGG - chr1_3:7050933-7050952 None:intergenic 30.0%
! AAAGACAGTAGTCTTACTAT+AGG - chr1_3:7051137-7051156 None:intergenic 30.0%
CAATGGAAACTGACAAAAAT+AGG - chr1_3:7051197-7051216 None:intergenic 30.0%
GTTTCCATTGTTTATTCTGT+AGG + chr1_3:7051207-7051226 Msa0100590:intron 30.0%
GTATCCTACAGAATAAACAA+TGG - chr1_3:7051214-7051233 None:intergenic 30.0%
TTGTTTATTCTGTAGGATAC+AGG + chr1_3:7051214-7051233 Msa0100590:intron 30.0%
TGTTTATTCTGTAGGATACA+GGG + chr1_3:7051215-7051234 Msa0100590:intron 30.0%
AAATTGAAACCTTCAAAAGG+TGG - chr1_3:7051469-7051488 None:intergenic 30.0%
! TGGTGATTTCTTTTACTAGT+CGG + chr1_3:7051556-7051575 Msa0100590:intron 30.0%
! ATTTCTTTTACTAGTCGGTT+AGG + chr1_3:7051561-7051580 Msa0100590:intron 30.0%
AATTAAAACCATGCCAACAT+TGG + chr1_3:7051711-7051730 Msa0100590:intron 30.0%
! TTTTTCCTACGTGTTTTGTA+GGG + chr1_3:7051993-7052012 Msa0100590:intron 30.0%
! TGCCATTTAGTTTAGTACTT+TGG + chr1_3:7052304-7052323 Msa0100590:intron 30.0%
! GCCATTTAGTTTAGTACTTT+GGG + chr1_3:7052305-7052324 Msa0100590:intron 30.0%
! TCCCAAAGTACTAAACTAAA+TGG - chr1_3:7052309-7052328 None:intergenic 30.0%
TATGCCAAAAACATCTTACA+TGG - chr1_3:7052431-7052450 None:intergenic 30.0%
ACATACACTCAAATGGAAAT+TGG + chr1_3:7052604-7052623 Msa0100590:intron 30.0%
AAAGAATAGTGAACAGAGTA+AGG - chr1_3:7052712-7052731 None:intergenic 30.0%
TCTGTTCACTATTCTTTCAT+TGG + chr1_3:7052715-7052734 Msa0100590:intron 30.0%
CTGTTCACTATTCTTTCATT+GGG + chr1_3:7052716-7052735 Msa0100590:intron 30.0%
AAGACTCACAAGTCAAAAAT+TGG + chr1_3:7053154-7053173 Msa0100590:CDS 30.0%
AAGTCAAAAATTGGAAGGAA+TGG + chr1_3:7053163-7053182 Msa0100590:CDS 30.0%
! GGAAAGCATAAAAAATCTTC+AGG + chr1_3:7053223-7053242 Msa0100590:CDS 30.0%
AGGAAAGATAAACATAGACA+TGG + chr1_3:7053409-7053428 Msa0100590:CDS 30.0%
AGAGATCAAAACGTAAATCA+AGG + chr1_3:7053479-7053498 Msa0100590:CDS 30.0%
TATATCATGTGCTCTCATAT+AGG + chr1_3:7053593-7053612 Msa0100590:intron 30.0%
TAGTATGTCAGTTATATAGG+TGG + chr1_3:7053635-7053654 Msa0100590:intron 30.0%
!! TTTTGTCTTGTTGAGAACAA+TGG - chr1_3:7053735-7053754 None:intergenic 30.0%
AAAGATCATTCTCAGATAGA+TGG + chr1_3:7053937-7053956 Msa0100590:CDS 30.0%
ATATAAGCTAGATGTTGTTG+GGG + chr1_3:7054076-7054095 Msa0100590:intron 30.0%
ACGACAAATCATTATTTACC+TGG - chr1_3:7054115-7054134 None:intergenic 30.0%
CCAATAGAAAGCAAGAAAAA+AGG - chr1_3:7054284-7054303 None:intergenic 30.0%
!!! CCTTTTTTCTTGCTTTCTAT+TGG + chr1_3:7054281-7054300 Msa0100590:intron 30.0%
! ATCTTGTTTGCCTTAGAATT+GGG + chr1_3:7054325-7054344 Msa0100590:intron 30.0%
! GATTCATTTTCCCAATTCTA+AGG - chr1_3:7054338-7054357 None:intergenic 30.0%
ATGTTAAAACTTAACTTCGG+TGG - chr1_3:7054420-7054439 None:intergenic 30.0%
TCCACTGAATCATAAAAAGA+GGG + chr1_3:7054581-7054600 Msa0100590:CDS 30.0%
GAAGAATTCCCAAAAGAAAA+TGG + chr1_3:7054627-7054646 Msa0100590:CDS 30.0%
ATGATAATCCAGGAAAATCT+AGG + chr1_3:7054724-7054743 Msa0100590:CDS 30.0%
GTAAGCATAAGAAATAACAG+AGG - chr1_3:7054772-7054791 None:intergenic 30.0%
!! TTTATTCAAAGTTGATGAGC+AGG + chr1_3:7054813-7054832 Msa0100590:intron 30.0%
AAAGATACTCTTATGCTAGA+AGG + chr1_3:7055500-7055519 Msa0100590:CDS 30.0%
ACATACTCTCATATTCTCAA+CGG - chr1_3:7055645-7055664 None:intergenic 30.0%
AAGTTTGAAAATAACCTTGG+TGG - chr1_3:7055760-7055779 None:intergenic 30.0%
AGGTGAAGATATTGTACTTA+TGG + chr1_3:7055814-7055833 Msa0100590:intron 30.0%
! CATGATTTTATTCATCGTTG+AGG + chr1_3:7055837-7055856 Msa0100590:intron 30.0%
TCATTATTATTCAGTGGCAT+GGG - chr1_3:7055893-7055912 None:intergenic 30.0%
ATCATTATTATTCAGTGGCA+TGG - chr1_3:7055894-7055913 None:intergenic 30.0%
TTATGTGTAAGCCTATATGT+AGG + chr1_3:7055957-7055976 Msa0100590:intron 30.0%
GAAAAGTAAGCAAAGATAAC+AGG + chr1_3:7056164-7056183 Msa0100590:CDS 30.0%
ATTCTTCATAAACCAATGCT+AGG + chr1_3:7056384-7056403 Msa0100590:three_prime_UTR 30.0%
GATAAATCAATTCCTAGCAT+TGG - chr1_3:7056399-7056418 None:intergenic 30.0%
ATGGCATGTTGAAAGATAAT+AGG + chr1_3:7056435-7056454 Msa0100590:three_prime_UTR 30.0%
!! AGTAAGTATCGATATTTGCT+CGG + chr1_3:7056504-7056523 Msa0100590:three_prime_UTR 30.0%
! AAAAGCATGAGTTTAACTGA+TGG + chr1_3:7056580-7056599 Msa0100590:three_prime_UTR 30.0%
GAATTGAGAATCTACGCTTT+GGG - chr1_3:7048962-7048981 None:intergenic 35.0%
AGAATTGAGAATCTACGCTT+TGG - chr1_3:7048963-7048982 None:intergenic 35.0%
! TCTCATTCTCTTCTCTTTTG+TGG + chr1_3:7048980-7048999 Msa0100590:five_prime_UTR 35.0%
CAAAACCTAATGGTGAATTG+AGG - chr1_3:7049034-7049053 None:intergenic 35.0%
! TTGGAGCACTTACGAAAATA+AGG + chr1_3:7049501-7049520 Msa0100590:intron 35.0%
TTATGGACAATGAACCTGTT+TGG + chr1_3:7049534-7049553 Msa0100590:intron 35.0%
GCTTATTTGAGCTTATCTAC+AGG - chr1_3:7049786-7049805 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr1_3:7049891-7049910 Msa0100590:intron 35.0%
TAAAACAATAAGGGCCTGTT+TGG - chr1_3:7049908-7049927 None:intergenic 35.0%
ATGAGTCAGTTAGACATTTC+TGG - chr1_3:7050066-7050085 None:intergenic 35.0%
! AGAAATGTCTAACTGACTCA+TGG + chr1_3:7050065-7050084 Msa0100590:intron 35.0%
AATAAAGTACAGCTGCATGT+AGG - chr1_3:7050178-7050197 None:intergenic 35.0%
GTATAGTAGCAGATTGATTG+AGG + chr1_3:7050208-7050227 Msa0100590:intron 35.0%
AGGTGTCAAACACTGAAATT+TGG + chr1_3:7050228-7050247 Msa0100590:intron 35.0%
AAGTCGGCATGAATTTAAGT+AGG + chr1_3:7050339-7050358 Msa0100590:intron 35.0%
GAGGAAAAACGAATACCATT+AGG - chr1_3:7050694-7050713 None:intergenic 35.0%
! CGAAAATTTTCAGCAGTCTT+TGG - chr1_3:7050739-7050758 None:intergenic 35.0%
ACATCATCACCATTGCTTAT+TGG + chr1_3:7050846-7050865 Msa0100590:intron 35.0%
!! GTTGATGATCCAATAAGCAA+TGG - chr1_3:7050858-7050877 None:intergenic 35.0%
GATCATCAACTGAAAGTTCT+TGG + chr1_3:7050868-7050887 Msa0100590:intron 35.0%
! TGCAGTGATTTTCCAGTATT+AGG - chr1_3:7051020-7051039 None:intergenic 35.0%
TTCTTCCATCAGATCGTAAA+AGG + chr1_3:7051053-7051072 Msa0100590:CDS 35.0%
CAAATAATCTGGTCATCAAG+AGG - chr1_3:7051322-7051341 None:intergenic 35.0%
GAGTGTGTGTATTAATGGTT+TGG + chr1_3:7051360-7051379 Msa0100590:intron 35.0%
GGAGACTTTATCAATCGAAA+TGG + chr1_3:7051400-7051419 Msa0100590:CDS 35.0%
GGAAACATGAAAATGGAACA+AGG - chr1_3:7051528-7051547 None:intergenic 35.0%
TGTGACAGGAAACATGAAAA+TGG - chr1_3:7051535-7051554 None:intergenic 35.0%
TTTCATGTTTCCTGTCACAA+TGG + chr1_3:7051536-7051555 Msa0100590:intron 35.0%
AAAGAAATCACCATTGTGAC+AGG - chr1_3:7051549-7051568 None:intergenic 35.0%
CTAAGAAAGTTCCATTTGCT+TGG + chr1_3:7051587-7051606 Msa0100590:intron 35.0%
!! AGATTGGTCTGTCATTTAGT+GGG + chr1_3:7051613-7051632 Msa0100590:intron 35.0%
ATGCAGATAAAAGCCAATGT+TGG - chr1_3:7051727-7051746 None:intergenic 35.0%
AACACGTAGGAAAAAGATAC+AGG - chr1_3:7051988-7052007 None:intergenic 35.0%
! CTTTTTCCTACGTGTTTTGT+AGG + chr1_3:7051992-7052011 Msa0100590:intron 35.0%
!! TTGAACTTTTTCTCCAGCTT+GGG + chr1_3:7052072-7052091 Msa0100590:intron 35.0%
GATAAACAGACCTATCAAGA+TGG - chr1_3:7052270-7052289 None:intergenic 35.0%
GTACTAAACTAAATGGCACT+AGG - chr1_3:7052302-7052321 None:intergenic 35.0%
! ATCAGTTTTCCTCATCCAAA+CGG - chr1_3:7052332-7052351 None:intergenic 35.0%
GTAAAAGCTAGAAACAGCTT+AGG + chr1_3:7052492-7052511 Msa0100590:intron 35.0%
TTAAGTTCTCTGTTTGTCTG+AGG + chr1_3:7052563-7052582 Msa0100590:intron 35.0%
TAAGTTCTCTGTTTGTCTGA+GGG + chr1_3:7052564-7052583 Msa0100590:intron 35.0%
CAAGTAAAGCCTGTTAAACA+AGG - chr1_3:7052660-7052679 None:intergenic 35.0%
TCACTATTCTTTCATTGGGT+TGG + chr1_3:7052720-7052739 Msa0100590:intron 35.0%
TTGCTCATGTGTTCAGTTAT+GGG + chr1_3:7052796-7052815 Msa0100590:intron 35.0%
!!! TTATTTTGACAGTTACGGCT+GGG - chr1_3:7052915-7052934 None:intergenic 35.0%
!!! ATTATTTTGACAGTTACGGC+TGG - chr1_3:7052916-7052935 None:intergenic 35.0%
TAATTGTGGTGAACACAATG+AGG + chr1_3:7052936-7052955 Msa0100590:CDS 35.0%
AATTGTGGTGAACACAATGA+GGG + chr1_3:7052937-7052956 Msa0100590:CDS 35.0%
AGAATTCCTTAGCCCATTTA+AGG + chr1_3:7052962-7052981 Msa0100590:intron 35.0%
GAACTCGGTATTCCTTAAAT+GGG - chr1_3:7052977-7052996 None:intergenic 35.0%
AGAACTCGGTATTCCTTAAA+TGG - chr1_3:7052978-7052997 None:intergenic 35.0%
AAACAGGTATTCCTTGAAGA+GGG - chr1_3:7053098-7053117 None:intergenic 35.0%
TAAACAGGTATTCCTTGAAG+AGG - chr1_3:7053099-7053118 None:intergenic 35.0%
CTCACAAGTCAAAAATTGGA+AGG + chr1_3:7053158-7053177 Msa0100590:CDS 35.0%
AAGCAAATAGTCATGAAGTG+CGG + chr1_3:7053194-7053213 Msa0100590:CDS 35.0%
AAAAATCTTCAGGAGACAGA+AGG + chr1_3:7053233-7053252 Msa0100590:CDS 35.0%
ACTTTCAGAAGATTCCATGT+CGG - chr1_3:7053305-7053324 None:intergenic 35.0%
GATCAAAACGTAAATCAAGG+AGG + chr1_3:7053482-7053501 Msa0100590:CDS 35.0%
!! GACATTGAGATTTTGTTGTG+TGG + chr1_3:7053811-7053830 Msa0100590:intron 35.0%
AACGATAATTCTAACGGCAA+AGG + chr1_3:7053883-7053902 Msa0100590:CDS 35.0%
!!! ATTTTAGGAATTGGCTTGGT+TGG - chr1_3:7054058-7054077 None:intergenic 35.0%
! TAGATGTTGTTGGGGTTTTT+GGG + chr1_3:7054084-7054103 Msa0100590:intron 35.0%
ATGTAAAACGACAATGGTCT+AGG - chr1_3:7054138-7054157 None:intergenic 35.0%
!! CAATTCTAAGGCAAACAAGA+TGG - chr1_3:7054326-7054345 None:intergenic 35.0%
! CATCTTGTTTGCCTTAGAAT+TGG + chr1_3:7054324-7054343 Msa0100590:intron 35.0%
GCTCACATGACAAACAAAAA+AGG - chr1_3:7054398-7054417 None:intergenic 35.0%
ATTGTTCAGCCTTTGTTCTT+CGG + chr1_3:7054479-7054498 Msa0100590:intron 35.0%
TAACTCTTTCTCCAAAACTG+AGG - chr1_3:7054559-7054578 None:intergenic 35.0%
! CTCTTTTTATGATTCAGTGG+AGG - chr1_3:7054582-7054601 None:intergenic 35.0%
CTCCACTGAATCATAAAAAG+AGG + chr1_3:7054580-7054599 Msa0100590:CDS 35.0%
! TCCCTCTTTTTATGATTCAG+TGG - chr1_3:7054585-7054604 None:intergenic 35.0%
ACTGAATCATAAAAAGAGGG+AGG + chr1_3:7054584-7054603 Msa0100590:CDS 35.0%
CTGAATCATAAAAAGAGGGA+GGG + chr1_3:7054585-7054604 Msa0100590:CDS 35.0%
TGAATCATAAAAAGAGGGAG+GGG + chr1_3:7054586-7054605 Msa0100590:CDS 35.0%
! AAAGTAGACCTAGATTTTCC+TGG - chr1_3:7054735-7054754 None:intergenic 35.0%
AATACCAGATCTGGAAGAAA+TGG - chr1_3:7054794-7054813 None:intergenic 35.0%
AATACTCATACTCTTGCTCA+CGG - chr1_3:7054864-7054883 None:intergenic 35.0%
! GAATGTGTGTTGTTCTCATA+GGG - chr1_3:7055087-7055106 None:intergenic 35.0%
! TGAATGTGTGTTGTTCTCAT+AGG - chr1_3:7055088-7055107 None:intergenic 35.0%
TAATGCTTCTCAAAGGAACT+CGG - chr1_3:7055318-7055337 None:intergenic 35.0%
TTCACCAAAACGTATCAGAA+GGG + chr1_3:7055462-7055481 Msa0100590:CDS 35.0%
GCTACTTAATTTACCTGTCA+CGG - chr1_3:7055579-7055598 None:intergenic 35.0%
TCAGATATTCAGGATACAGA+AGG + chr1_3:7055689-7055708 Msa0100590:intron 35.0%
!! ATTCATCGTTGAGGCATTTT+TGG + chr1_3:7055846-7055865 Msa0100590:intron 35.0%
CATTATTATTCAGTGGCATG+GGG - chr1_3:7055892-7055911 None:intergenic 35.0%
TAAGCAAAGATAACAGGTCA+AGG + chr1_3:7056170-7056189 Msa0100590:CDS 35.0%
!! TAAAGGTGAAGTACCGAATT+CGG + chr1_3:7056262-7056281 Msa0100590:exon 35.0%
! ATCCTCGTAGTAAGTTGAAA+TGG + chr1_3:7056416-7056435 Msa0100590:three_prime_UTR 35.0%
ACTACAAGACACTGATAACT+GGG - chr1_3:7056559-7056578 None:intergenic 35.0%
TACTACAAGACACTGATAAC+TGG - chr1_3:7056560-7056579 None:intergenic 35.0%
GAGTTTAACTGATGGAGATT+TGG + chr1_3:7056588-7056607 Msa0100590:three_prime_UTR 35.0%
TCATGCTAACCATAAAGGAT+AGG - chr1_3:7056614-7056633 None:intergenic 35.0%
TGTGTCTGGAAGTTTATGTA+TGG + chr1_3:7056705-7056724 Msa0100590:three_prime_UTR 35.0%
TCTGGAAGTTTATGTATGGA+TGG + chr1_3:7056709-7056728 Msa0100590:three_prime_UTR 35.0%
CTGGAAGTTTATGTATGGAT+GGG + chr1_3:7056710-7056729 Msa0100590:three_prime_UTR 35.0%
! TCTCTTCTCTTTTGTGGTTC+AGG + chr1_3:7048986-7049005 Msa0100590:five_prime_UTR 40.0%
TCCTTCCTCAATTCACCATT+AGG + chr1_3:7049026-7049045 Msa0100590:intron 40.0%
ACCTAATGGTGAATTGAGGA+AGG - chr1_3:7049030-7049049 None:intergenic 40.0%
CGGAAAACGACAAAACCTAA+TGG - chr1_3:7049044-7049063 None:intergenic 40.0%
AAAACCTAAAACCCTAGCTG+AGG - chr1_3:7049087-7049106 None:intergenic 40.0%
GGCATAAGCGCTTATGAATA+AGG + chr1_3:7049404-7049423 Msa0100590:intron 40.0%
ACTGAGAGAGAGAATTCATG+TGG + chr1_3:7049958-7049977 Msa0100590:intron 40.0%
CTGAGAGAGAGAATTCATGT+GGG + chr1_3:7049959-7049978 Msa0100590:intron 40.0%
TGAGAGAGAGAATTCATGTG+GGG + chr1_3:7049960-7049979 Msa0100590:intron 40.0%
CCTTACCGAAACAAGATAAC+AGG - chr1_3:7050297-7050316 None:intergenic 40.0%
! CCTGTTATCTTGTTTCGGTA+AGG + chr1_3:7050294-7050313 Msa0100590:intron 40.0%
!! TATTAGCTTGATAGTGCAGC+TGG + chr1_3:7050381-7050400 Msa0100590:intron 40.0%
! AGCTGGATTGTTCAGTTTTG+TGG + chr1_3:7050398-7050417 Msa0100590:intron 40.0%
GAAAAACCCCATGGTGTTTA+TGG + chr1_3:7050574-7050593 Msa0100590:CDS 40.0%
TTTATGGACGTGTCTGTAGA+CGG + chr1_3:7050590-7050609 Msa0100590:CDS 40.0%
AACATCGTAGAAAAGCTGAG+AGG - chr1_3:7050713-7050732 None:intergenic 40.0%
! AATTTTCGTGCACTGTGTAC+CGG + chr1_3:7050751-7050770 Msa0100590:CDS 40.0%
GATGATGTGTGGAAGGAAAA+AGG - chr1_3:7050834-7050853 None:intergenic 40.0%
! TAAGCAATGGTGATGATGTG+TGG - chr1_3:7050845-7050864 None:intergenic 40.0%
!! AATGTGTCATTTCCCCTTTC+AGG + chr1_3:7050978-7050997 Msa0100590:intron 40.0%
TTTCCCCTTTCAGGAGAAAA+AGG + chr1_3:7050987-7051006 Msa0100590:intron 40.0%
! ACTCCTTTTTCTCCTGAAAG+GGG - chr1_3:7050993-7051012 None:intergenic 40.0%
! GACTCCTTTTTCTCCTGAAA+GGG - chr1_3:7050994-7051013 None:intergenic 40.0%
! TGACTCCTTTTTCTCCTGAA+AGG - chr1_3:7050995-7051014 None:intergenic 40.0%
AAAGGAGTCAGTCCTAATAC+TGG + chr1_3:7051005-7051024 Msa0100590:CDS 40.0%
TGGAAAATCACTGCACTACA+AGG + chr1_3:7051025-7051044 Msa0100590:CDS 40.0%
GGAAAATCACTGCACTACAA+GGG + chr1_3:7051026-7051045 Msa0100590:CDS 40.0%
CGTAAAAGGCTCCATTGTTA+AGG + chr1_3:7051067-7051086 Msa0100590:CDS 40.0%
TCCATTTGCTTGGTACAGAT+TGG + chr1_3:7051597-7051616 Msa0100590:intron 40.0%
ACCAATCTGTACCAAGCAAA+TGG - chr1_3:7051601-7051620 None:intergenic 40.0%
!! CAGATTGGTCTGTCATTTAG+TGG + chr1_3:7051612-7051631 Msa0100590:intron 40.0%
!! GATTGGTCTGTCATTTAGTG+GGG + chr1_3:7051614-7051633 Msa0100590:intron 40.0%
GATAAAAGCCAATGTTGGCA+TGG - chr1_3:7051722-7051741 None:intergenic 40.0%
ACAAGCTAAAGAAGAAGAGC+AGG - chr1_3:7051763-7051782 None:intergenic 40.0%
TTTCATGAAACCTCATCGAC+AGG + chr1_3:7051904-7051923 Msa0100590:intron 40.0%
ATACAACACATGCTGCATTC+GGG - chr1_3:7051953-7051972 None:intergenic 40.0%
CATACAACACATGCTGCATT+CGG - chr1_3:7051954-7051973 None:intergenic 40.0%
GCAACTTAGCATTCTAACCT+GGG - chr1_3:7052048-7052067 None:intergenic 40.0%
AGCAACTTAGCATTCTAACC+TGG - chr1_3:7052049-7052068 None:intergenic 40.0%
!! CTTGAACTTTTTCTCCAGCT+TGG + chr1_3:7052071-7052090 Msa0100590:intron 40.0%
TAACTCAAAAGAACCCAAGC+TGG - chr1_3:7052088-7052107 None:intergenic 40.0%
! CCTCTGAAAAAATAGGTCAG+AGG - chr1_3:7052144-7052163 None:intergenic 40.0%
!!! CCTCTGACCTATTTTTTCAG+AGG + chr1_3:7052141-7052160 Msa0100590:intron 40.0%
! GGAGACTCCTCTGAAAAAAT+AGG - chr1_3:7052151-7052170 None:intergenic 40.0%
!!! TTTTTTCAGAGGAGTCTCCT+AGG + chr1_3:7052152-7052171 Msa0100590:intron 40.0%
AAGCTGATCACCATCTTGAT+AGG + chr1_3:7052257-7052276 Msa0100590:CDS 40.0%
!! TTTAGTACTTTGGGACCGTT+TGG + chr1_3:7052314-7052333 Msa0100590:intron 40.0%
AAAGCTAGAAACAGCTTAGG+AGG + chr1_3:7052495-7052514 Msa0100590:intron 40.0%
!! TGCAATGTGCCTTGTTTAAC+AGG + chr1_3:7052648-7052667 Msa0100590:intron 40.0%
CTTGCTCATGTGTTCAGTTA+TGG + chr1_3:7052795-7052814 Msa0100590:intron 40.0%
TGCTCATGTGTTCAGTTATG+GGG + chr1_3:7052797-7052816 Msa0100590:intron 40.0%
!! TTTTTGGCAAGCTGTTGCAA+GGG + chr1_3:7052842-7052861 Msa0100590:CDS 40.0%
GAAGATGTAGGCAATGAAGA+AGG + chr1_3:7052886-7052905 Msa0100590:CDS 40.0%
!! GGTATTCCTTAAATGGGCTA+AGG - chr1_3:7052971-7052990 None:intergenic 40.0%
CTCATATGAAGGGAAGAACT+CGG - chr1_3:7052992-7053011 None:intergenic 40.0%
TGAACTTGTGTAAGATGACG+AGG - chr1_3:7053353-7053372 None:intergenic 40.0%
CAAGTTCATCTAGTGATGAC+AGG + chr1_3:7053365-7053384 Msa0100590:CDS 40.0%
GGAGGAAAAGAAAGAGATCT+AGG + chr1_3:7053389-7053408 Msa0100590:CDS 40.0%
GAGATAAACGTCGAGAAAAG+AGG + chr1_3:7053440-7053459 Msa0100590:CDS 40.0%
ATGTGCTCTCATATAGGTTG+TGG + chr1_3:7053599-7053618 Msa0100590:intron 40.0%
TGCAGTTAAACTCGTATGGT+AGG - chr1_3:7053711-7053730 None:intergenic 40.0%
TGGATGCAGTTAAACTCGTA+TGG - chr1_3:7053715-7053734 None:intergenic 40.0%
!! AGATTTTGTTGTGTGGTGTC+AGG + chr1_3:7053818-7053837 Msa0100590:intron 40.0%
!! GATTTTGTTGTGTGGTGTCA+GGG + chr1_3:7053819-7053838 Msa0100590:intron 40.0%
! CTAGATGTTGTTGGGGTTTT+TGG + chr1_3:7054083-7054102 Msa0100590:intron 40.0%
! AGATGTTGTTGGGGTTTTTG+GGG + chr1_3:7054085-7054104 Msa0100590:intron 40.0%
ATGTAAATGTAATCGTGGCC+TGG + chr1_3:7054156-7054175 Msa0100590:intron 40.0%
TAATCGTGGCCTGGAAAATA+AGG + chr1_3:7054165-7054184 Msa0100590:intron 40.0%
!!! CCTAGATTGCCTTATTTTCC+AGG - chr1_3:7054177-7054196 None:intergenic 40.0%
CCTGGAAAATAAGGCAATCT+AGG + chr1_3:7054174-7054193 Msa0100590:intron 40.0%
! CTTTCTATTGGCTGTTAGCT+AGG + chr1_3:7054293-7054312 Msa0100590:intron 40.0%
GAATCATAAAAAGAGGGAGG+GGG + chr1_3:7054587-7054606 Msa0100590:CDS 40.0%
ACTTCTGTCAGGTCTATAGT+TGG - chr1_3:7054679-7054698 None:intergenic 40.0%
! TAACAGAGGTGTGACAAGAT+TGG - chr1_3:7054758-7054777 None:intergenic 40.0%
CTTACCATTTCTTCCAGATC+TGG + chr1_3:7054787-7054806 Msa0100590:intron 40.0%
GTCCTGTTAGAAGAATAAGC+AGG + chr1_3:7054996-7055015 Msa0100590:CDS 40.0%
CTCCTGCTTATTCTTCTAAC+AGG - chr1_3:7055001-7055020 None:intergenic 40.0%
TTGCTAAGACTTCTACGATC+GGG - chr1_3:7055142-7055161 None:intergenic 40.0%
CTTGCTAAGACTTCTACGAT+CGG - chr1_3:7055143-7055162 None:intergenic 40.0%
TTTGAGAAACAGATCTGGCA+GGG - chr1_3:7055168-7055187 None:intergenic 40.0%
ATACTCTAGCAGAACTCCTA+CGG - chr1_3:7055192-7055211 None:intergenic 40.0%
CTCTTTCTTGACACTCTTAC+AGG - chr1_3:7055241-7055260 None:intergenic 40.0%
! TGTCAAGAAAGAGCATAAGC+AGG + chr1_3:7055248-7055267 Msa0100590:CDS 40.0%
!! ATACGTTTTGGTGAAGCATC+GGG - chr1_3:7055457-7055476 None:intergenic 40.0%
!! GATACGTTTTGGTGAAGCAT+CGG - chr1_3:7055458-7055477 None:intergenic 40.0%
CTTCACCAAAACGTATCAGA+AGG + chr1_3:7055461-7055480 Msa0100590:CDS 40.0%
TCACCAAAACGTATCAGAAG+GGG + chr1_3:7055463-7055482 Msa0100590:CDS 40.0%
GGTCATTCCTTCCATTATAG+CGG - chr1_3:7055558-7055577 None:intergenic 40.0%
CAGGTAAATTAAGTAGCACG+TGG + chr1_3:7055582-7055601 Msa0100590:intron 40.0%
CTTTCTGCTCTCAGATATTC+AGG + chr1_3:7055679-7055698 Msa0100590:intron 40.0%
TGGGGATTTGAATACTAGGT+AGG - chr1_3:7055874-7055893 None:intergenic 40.0%
CAGTATGCAGTCTAAACAAC+AGG - chr1_3:7055926-7055945 None:intergenic 40.0%
GTAAGCCTATATGTAGGTAC+CGG + chr1_3:7055963-7055982 Msa0100590:intron 40.0%
AACCATTTCCATAAGAGACC+AGG - chr1_3:7056228-7056247 None:intergenic 40.0%
GTTCTCCTGATTCAAGCTAA+AGG + chr1_3:7056245-7056264 Msa0100590:CDS 40.0%
!! CTTCACCTTTAGCTTGAATC+AGG - chr1_3:7056253-7056272 None:intergenic 40.0%
AAACCTCACCTTAAATGAGC+TGG + chr1_3:7056296-7056315 Msa0100590:three_prime_UTR 40.0%
CAAAGCTTCCAGCTCATTTA+AGG - chr1_3:7056307-7056326 None:intergenic 40.0%
AGTAACTAATTCCAGCAAGC+AGG - chr1_3:7056357-7056376 None:intergenic 40.0%
! TGCCATTTCAACTTACTACG+AGG - chr1_3:7056421-7056440 None:intergenic 40.0%
TGATAACTGGGGATATGGAT+GGG - chr1_3:7056547-7056566 None:intergenic 40.0%
CTACAAGACACTGATAACTG+GGG - chr1_3:7056558-7056577 None:intergenic 40.0%
GAGATTTGGCCTATCCTTTA+TGG + chr1_3:7056602-7056621 Msa0100590:three_prime_UTR 40.0%
CACACATCTATATGGGTCAT+AGG - chr1_3:7056645-7056664 None:intergenic 40.0%
!! GTATTTTAGAAGCGTGAGGT+TGG - chr1_3:7056679-7056698 None:intergenic 40.0%
!! AACGGTATTTTAGAAGCGTG+AGG - chr1_3:7056683-7056702 None:intergenic 40.0%
TAAAATACCGTTCGTGTGTC+TGG + chr1_3:7056691-7056710 Msa0100590:three_prime_UTR 40.0%
TAAACTTCCAGACACACGAA+CGG - chr1_3:7056701-7056720 None:intergenic 40.0%
!! ATGAAACGCAAGGTACTGTG+CGG - chr1_3:7049064-7049083 None:intergenic 45.0%
TTGCGTTTCATCCTCAGCTA+GGG + chr1_3:7049073-7049092 Msa0100590:intron 45.0%
! TCATCCTCAGCTAGGGTTTT+AGG + chr1_3:7049080-7049099 Msa0100590:intron 45.0%
TTCACTCGATTTCGCTGATC+TGG + chr1_3:7049175-7049194 Msa0100590:intron 45.0%
!! CATAACGGGCCTGTTTGAAT+TGG - chr1_3:7049808-7049827 None:intergenic 45.0%
CAATAAGGGCCTGTTTGGAT+TGG - chr1_3:7049903-7049922 None:intergenic 45.0%
! TAACTGACTCATGGCCAGTT+AGG + chr1_3:7050074-7050093 Msa0100590:intron 45.0%
! CTAACAGCCTTGTACCTAAC+TGG - chr1_3:7050091-7050110 None:intergenic 45.0%
GTTAGGTACAAGGCTGTTAG+AGG + chr1_3:7050091-7050110 Msa0100590:intron 45.0%
GGCAAAGAAGAAAAACCCCA+TGG + chr1_3:7050565-7050584 Msa0100590:CDS 45.0%
ACACGTCCATAAACACCATG+GGG - chr1_3:7050583-7050602 None:intergenic 45.0%
GACACGTCCATAAACACCAT+GGG - chr1_3:7050584-7050603 None:intergenic 45.0%
AGACACGTCCATAAACACCA+TGG - chr1_3:7050585-7050604 None:intergenic 45.0%
TTATGGACGTGTCTGTAGAC+GGG + chr1_3:7050591-7050610 Msa0100590:CDS 45.0%
CGGGGATCCTTATGAAAGAA+TGG + chr1_3:7050610-7050629 Msa0100590:CDS 45.0%
! CAATGGTGATGATGTGTGGA+AGG - chr1_3:7050841-7050860 None:intergenic 45.0%
! TGGAGCCTTTTACGATCTGA+TGG - chr1_3:7051061-7051080 None:intergenic 45.0%
GGTTGAAAATGGCTTAGCAG+TGG + chr1_3:7051169-7051188 Msa0100590:intron 45.0%
!!! TGGTTTGGTTTGCCTTTTGC+AGG + chr1_3:7051375-7051394 Msa0100590:intron 45.0%
!!! GGTTTGGTTTGCCTTTTGCA+GGG + chr1_3:7051376-7051395 Msa0100590:intron 45.0%
TAAAGTCTCCACCCTGCAAA+AGG - chr1_3:7051390-7051409 None:intergenic 45.0%
ATATGTGATGCCTGTCGATG+AGG - chr1_3:7051917-7051936 None:intergenic 45.0%
CATTCTAACCTGGGAACTTG+GGG - chr1_3:7052039-7052058 None:intergenic 45.0%
GCATTCTAACCTGGGAACTT+GGG - chr1_3:7052040-7052059 None:intergenic 45.0%
AGCATTCTAACCTGGGAACT+TGG - chr1_3:7052041-7052060 None:intergenic 45.0%
GGAGAATCATGCTTTAGCCT+AGG - chr1_3:7052172-7052191 None:intergenic 45.0%
AGGCTAAAGCATGATTCTCC+AGG + chr1_3:7052172-7052191 Msa0100590:CDS 45.0%
TTCTCCAGGCCTTCTATCTA+TGG + chr1_3:7052186-7052205 Msa0100590:CDS 45.0%
CAGCAATCGCCATAGATAGA+AGG - chr1_3:7052198-7052217 None:intergenic 45.0%
ATTGCTGATCGTGACACTCT+TGG + chr1_3:7052211-7052230 Msa0100590:CDS 45.0%
AAGGCACATTGCATCAAGTG+TGG - chr1_3:7052641-7052660 None:intergenic 45.0%
GTGAACAGAGTAAGGTCATC+TGG - chr1_3:7052704-7052723 None:intergenic 45.0%
!! CAGTTATGGGGTCATTTTGC+AGG + chr1_3:7052809-7052828 Msa0100590:intron 45.0%
!! GTCATTTTGCAGGAAGCATG+TGG + chr1_3:7052819-7052838 Msa0100590:intron 45.0%
!! TGCAGGAAGCATGTGGTTTT+TGG + chr1_3:7052826-7052845 Msa0100590:intron 45.0%
!!! GTTTTTGGCAAGCTGTTGCA+AGG + chr1_3:7052841-7052860 Msa0100590:CDS 45.0%
TAGTCATGAAGTGCGGAGAA+AGG + chr1_3:7053201-7053220 Msa0100590:CDS 45.0%
AGTCATGAAGTGCGGAGAAA+GGG + chr1_3:7053202-7053221 Msa0100590:CDS 45.0%
TAGTTCCTCAGATTCCGACA+TGG + chr1_3:7053288-7053307 Msa0100590:CDS 45.0%
AGATTCCATGTCGGAATCTG+AGG - chr1_3:7053296-7053315 None:intergenic 45.0%
GTTCATCTAGTGATGACAGG+CGG + chr1_3:7053368-7053387 Msa0100590:CDS 45.0%
!! GATGTTGTTGGGGTTTTTGG+GGG + chr1_3:7054086-7054105 Msa0100590:intron 45.0%
!! ATGTTGTTGGGGTTTTTGGG+GGG + chr1_3:7054087-7054106 Msa0100590:intron 45.0%
CACATGCTACCGAAGAACAA+AGG - chr1_3:7054491-7054510 None:intergenic 45.0%
! AGTCCAGTCATCCTCAGTTT+TGG + chr1_3:7054545-7054564 Msa0100590:CDS 45.0%
TCTCCAAAACTGAGGATGAC+TGG - chr1_3:7054551-7054570 None:intergenic 45.0%
! GCTGCGCTCCATTTTCTTTT+GGG - chr1_3:7054638-7054657 None:intergenic 45.0%
GACCTGACAGAAGTGAAGAA+AGG + chr1_3:7054685-7054704 Msa0100590:CDS 45.0%
TGCCTTTCTTCACTTCTGTC+AGG - chr1_3:7054690-7054709 None:intergenic 45.0%
!! GACGTGATGGATGATAATCC+AGG + chr1_3:7054714-7054733 Msa0100590:CDS 45.0%
TCCTCTTTGGACTAATGCTC+GGG - chr1_3:7054910-7054929 None:intergenic 45.0%
CTCCTCTTTGGACTAATGCT+CGG - chr1_3:7054911-7054930 None:intergenic 45.0%
CTTCTGCTAAACCTCCTCTT+TGG - chr1_3:7054923-7054942 None:intergenic 45.0%
AGGTTTAGCAGAAGTCCAAG+TGG + chr1_3:7054929-7054948 Msa0100590:CDS 45.0%
! CGAGGACTTTTACTACCACT+TGG - chr1_3:7054947-7054966 None:intergenic 45.0%
! CTTTGAGAAACAGATCTGGC+AGG - chr1_3:7055169-7055188 None:intergenic 45.0%
!! ACGGCTTTGAGAAACAGATC+TGG - chr1_3:7055173-7055192 None:intergenic 45.0%
! GATCTGTTTCTCAAAGCCGT+AGG + chr1_3:7055173-7055192 Msa0100590:CDS 45.0%
CATCACGAAGAACAGTCAGT+AGG + chr1_3:7055212-7055231 Msa0100590:CDS 45.0%
CTTCTGGCAGATGATCTAAC+TGG - chr1_3:7055277-7055296 None:intergenic 45.0%
CTTCGGCTAATGCTTCTCAA+AGG - chr1_3:7055325-7055344 None:intergenic 45.0%
! CTTCCCCTTCTGATACGTTT+TGG - chr1_3:7055469-7055488 None:intergenic 45.0%
AAACGTATCAGAAGGGGAAG+AGG + chr1_3:7055469-7055488 Msa0100590:CDS 45.0%
!! TGAGGTACCGCTATAATGGA+AGG + chr1_3:7055548-7055567 Msa0100590:CDS 45.0%
GGCATGGGGATTTGAATACT+AGG - chr1_3:7055878-7055897 None:intergenic 45.0%
CTACTCCGGTACCTACATAT+AGG - chr1_3:7055971-7055990 None:intergenic 45.0%
!! CTATATGTAGGTACCGGAGT+AGG + chr1_3:7055969-7055988 Msa0100590:intron 45.0%
TAGTGATTCCACAGAAGACC+TGG - chr1_3:7056137-7056156 None:intergenic 45.0%
! TCTCCTTCTAGAAGCTCAGA+CGG + chr1_3:7056193-7056212 Msa0100590:CDS 45.0%
TTTCCGTCTGAGCTTCTAGA+AGG - chr1_3:7056199-7056218 None:intergenic 45.0%
AGAAGCTCAGACGGAAAGAA+AGG + chr1_3:7056202-7056221 Msa0100590:CDS 45.0%
AAGAAAGGCCTGGTCTCTTA+TGG + chr1_3:7056217-7056236 Msa0100590:CDS 45.0%
TACCGAATTCGGACCTTTCA+GGG + chr1_3:7056273-7056292 Msa0100590:three_prime_UTR 45.0%
TTCCCTGAAAGGTCCGAATT+CGG - chr1_3:7056278-7056297 None:intergenic 45.0%
TAAGGTGAGGTTTCCCTGAA+AGG - chr1_3:7056289-7056308 None:intergenic 45.0%
! CTTCCAGCTCATTTAAGGTG+AGG - chr1_3:7056302-7056321 None:intergenic 45.0%
ATACTGCTTTACCTGCTTGC+TGG + chr1_3:7056343-7056362 Msa0100590:three_prime_UTR 45.0%
GATAACTGGGGATATGGATG+GGG - chr1_3:7056546-7056565 None:intergenic 45.0%
CTGATAACTGGGGATATGGA+TGG - chr1_3:7056548-7056567 None:intergenic 45.0%
GACACTGATAACTGGGGATA+TGG - chr1_3:7056552-7056571 None:intergenic 45.0%
CTAGCTGAGGATGAAACGCA+AGG - chr1_3:7049074-7049093 None:intergenic 50.0%
CTTGCGTTTCATCCTCAGCT+AGG + chr1_3:7049072-7049091 Msa0100590:intron 50.0%
CTCATGGCCAGTTAGGTACA+AGG + chr1_3:7050081-7050100 Msa0100590:intron 50.0%
TATGGACGTGTCTGTAGACG+GGG + chr1_3:7050592-7050611 Msa0100590:CDS 50.0%
TCTGTAGGATACAGGGCTGA+TGG + chr1_3:7051222-7051241 Msa0100590:intron 50.0%
!!! TTGGTTTGCCTTTTGCAGGG+TGG + chr1_3:7051379-7051398 Msa0100590:intron 50.0%
CCAGTCCCTACAAAACACGT+AGG - chr1_3:7052001-7052020 None:intergenic 50.0%
! CCTACGTGTTTTGTAGGGAC+TGG + chr1_3:7051998-7052017 Msa0100590:intron 50.0%
! ACGTGTTTTGTAGGGACTGG+TGG + chr1_3:7052001-7052020 Msa0100590:intron 50.0%
AGCATATACCCCAAGTTCCC+AGG + chr1_3:7052028-7052047 Msa0100590:CDS 50.0%
ATCGCCATAGATAGAAGGCC+TGG - chr1_3:7052193-7052212 None:intergenic 50.0%
!! ACTTTGGGACCGTTTGGATG+AGG + chr1_3:7052320-7052339 Msa0100590:intron 50.0%
AACGTCGAGAAAAGAGGCGA+AGG + chr1_3:7053446-7053465 Msa0100590:CDS 50.0%
! TTGTGTGGTGTCAGGGAATC+AGG + chr1_3:7053826-7053845 Msa0100590:intron 50.0%
TCATAAAAAGAGGGAGGGGG+TGG + chr1_3:7054590-7054609 Msa0100590:CDS 50.0%
CATAAAAAGAGGGAGGGGGT+GGG + chr1_3:7054591-7054610 Msa0100590:CDS 50.0%
! GGCTGCGCTCCATTTTCTTT+TGG - chr1_3:7054639-7054658 None:intergenic 50.0%
AGAAAGGCAGCATGACGTGA+TGG + chr1_3:7054701-7054720 Msa0100590:CDS 50.0%
! CTCTTGCTCACGGTTTGCTT+AGG - chr1_3:7054854-7054873 None:intergenic 50.0%
! GGGCTTTTGCACACACACTT+GGG - chr1_3:7054890-7054909 None:intergenic 50.0%
CGAGCATTAGTCCAAAGAGG+AGG + chr1_3:7054909-7054928 Msa0100590:CDS 50.0%
AAAGTCCTCGTGCTCTATCG+CGG + chr1_3:7054957-7054976 Msa0100590:CDS 50.0%
TACGATCGGGACTTCTCACA+GGG - chr1_3:7055129-7055148 None:intergenic 50.0%
AGAAGTCTCAGCAGGAGTTC+CGG + chr1_3:7055292-7055311 Msa0100590:CDS 50.0%
TTGCCACTCTGACAGGACTT+CGG - chr1_3:7055342-7055361 None:intergenic 50.0%
TACGACTCCTGGAATAGCTG+CGG - chr1_3:7055378-7055397 None:intergenic 50.0%
! GAAGGTATAGAACCCCCTCT+CGG + chr1_3:7055518-7055537 Msa0100590:CDS 50.0%
CCATTATAGCGGTACCTCAC+AGG - chr1_3:7055547-7055566 None:intergenic 50.0%
!! CCTGTGAGGTACCGCTATAA+TGG + chr1_3:7055544-7055563 Msa0100590:CDS 50.0%
ATGGAAGGAATGACCGTGAC+AGG + chr1_3:7055563-7055582 Msa0100590:CDS 50.0%
!! GATACAGAAGGTACTCCCCT+AGG + chr1_3:7055701-7055720 Msa0100590:CDS 50.0%
! GGTGGGCTTCGTGATATAGA+CGG - chr1_3:7056007-7056026 None:intergenic 50.0%
CTATACCTTCGTGCTCGGTA+AGG - chr1_3:7056028-7056047 None:intergenic 50.0%
TTGGGCTATACCTTCGTGCT+CGG - chr1_3:7056033-7056052 None:intergenic 50.0%
TATTCACACGAGGAGGTGAG+CGG - chr1_3:7056075-7056094 None:intergenic 50.0%
ACAGAAGACCTGGATCGAGA+TGG - chr1_3:7056127-7056146 None:intergenic 50.0%
ATCTCGATCCAGGTCTTCTG+TGG + chr1_3:7056126-7056145 Msa0100590:CDS 50.0%
GGCCTGGTCTCTTATGGAAA+TGG + chr1_3:7056223-7056242 Msa0100590:CDS 50.0%
GTACCGAATTCGGACCTTTC+AGG + chr1_3:7056272-7056291 Msa0100590:three_prime_UTR 50.0%
TCGATATTTGCTCGGACGTG+TGG + chr1_3:7056512-7056531 Msa0100590:three_prime_UTR 50.0%
CGATATTTGCTCGGACGTGT+GGG + chr1_3:7056513-7056532 Msa0100590:three_prime_UTR 50.0%
CATCTAGTGATGACAGGCGG+AGG + chr1_3:7053371-7053390 Msa0100590:CDS 55.0%
GAGGATGACTGGACTTCAGC+TGG - chr1_3:7054540-7054559 None:intergenic 55.0%
AATGGAGCGCAGCCTAGCAA+CGG + chr1_3:7054645-7054664 Msa0100590:CDS 55.0%
!! TTGGCCTTGATGCCGTTGCT+AGG - chr1_3:7054660-7054679 None:intergenic 55.0%
! CGGGCTTTTGCACACACACT+TGG - chr1_3:7054891-7054910 None:intergenic 55.0%
GCCCGAGCATTAGTCCAAAG+AGG + chr1_3:7054906-7054925 Msa0100590:CDS 55.0%
TATCGCGGAGGAGTTTGAGC+AGG + chr1_3:7054972-7054991 Msa0100590:CDS 55.0%
CTACGATCGGGACTTCTCAC+AGG - chr1_3:7055130-7055149 None:intergenic 55.0%
CATCTGCCAGAAGTCTCAGC+AGG + chr1_3:7055284-7055303 Msa0100590:CDS 55.0%
GGAACTCCTGCTGAGACTTC+TGG - chr1_3:7055293-7055312 None:intergenic 55.0%
GCTTCTCAAAGGAACTCGGC+CGG - chr1_3:7055314-7055333 None:intergenic 55.0%
TAGCCGAAGTCCTGTCAGAG+TGG + chr1_3:7055336-7055355 Msa0100590:CDS 55.0%
GCAATCACCGCAGCTATTCC+AGG + chr1_3:7055368-7055387 Msa0100590:CDS 55.0%
GAGTCGTAGCCCTGTTCGTA+GGG + chr1_3:7055390-7055409 Msa0100590:CDS 55.0%
GTGTCCTTGCCCTACGAACA+GGG - chr1_3:7055402-7055421 None:intergenic 55.0%
TACCTCACAGGAGACCGAGA+GGG - chr1_3:7055535-7055554 None:intergenic 55.0%
! GGTACTCCCCTAGGCGTTTT+AGG + chr1_3:7055710-7055729 Msa0100590:CDS 55.0%
TGGGCTCCTAAAACGCCTAG+GGG - chr1_3:7055719-7055738 None:intergenic 55.0%
GTGGGCTCCTAAAACGCCTA+GGG - chr1_3:7055720-7055739 None:intergenic 55.0%
CTTGGTGGAGTTCTTCTCCG+TGG - chr1_3:7055745-7055764 None:intergenic 55.0%
CACGGAGAAGAACTCCACCA+AGG + chr1_3:7055743-7055762 Msa0100590:CDS 55.0%
GTGTCCTGCTTCTCCTACTC+CGG - chr1_3:7055985-7056004 None:intergenic 55.0%
ACCTTCGTGCTCGGTAAGGT+GGG - chr1_3:7056024-7056043 None:intergenic 55.0%
TACCTTCGTGCTCGGTAAGG+TGG - chr1_3:7056025-7056044 None:intergenic 55.0%
! TGCGAATTGGGCTAGGGCTT+GGG - chr1_3:7056051-7056070 None:intergenic 55.0%
! TTGCGAATTGGGCTAGGGCT+TGG - chr1_3:7056052-7056071 None:intergenic 55.0%
AGCGGTTGCGAATTGGGCTA+GGG - chr1_3:7056057-7056076 None:intergenic 55.0%
GAGGTGAGCGGTTGCGAATT+GGG - chr1_3:7056063-7056082 None:intergenic 55.0%
GCTCACCTCCTCGTGTGAAT+AGG + chr1_3:7056074-7056093 Msa0100590:CDS 55.0%
! TCGAGATGGACTCCTGCTGA+GGG - chr1_3:7056113-7056132 None:intergenic 55.0%
! ATCGAGATGGACTCCTGCTG+AGG - chr1_3:7056114-7056133 None:intergenic 55.0%
CTCAGACGGAAAGAAAGGCC+TGG + chr1_3:7056207-7056226 Msa0100590:CDS 55.0%
!! TGGGGTTTTTGGGGGGTTCC+AGG + chr1_3:7054094-7054113 Msa0100590:intron 60.0%
GCAGCCTAGCAACGGCATCA+AGG + chr1_3:7054653-7054672 Msa0100590:CDS 60.0%
TCAGCAGAAGCCCCGTGAGA+GGG + chr1_3:7055035-7055054 Msa0100590:CDS 60.0%
TCTCCCCTTCCTCCCTCTCA+CGG - chr1_3:7055050-7055069 None:intergenic 60.0%
CCTCTGCTTGCCACTCTGAC+AGG - chr1_3:7055349-7055368 None:intergenic 60.0%
CCTGTCAGAGTGGCAAGCAG+AGG + chr1_3:7055346-7055365 Msa0100590:CDS 60.0%
ACGAACAGGGCTACGACTCC+TGG - chr1_3:7055389-7055408 None:intergenic 60.0%
GGAGTCGTAGCCCTGTTCGT+AGG + chr1_3:7055389-7055408 Msa0100590:CDS 60.0%
GTAGCCCTGTTCGTAGGGCA+AGG + chr1_3:7055395-7055414 Msa0100590:CDS 60.0%
GGTGTCCTTGCCCTACGAAC+AGG - chr1_3:7055403-7055422 None:intergenic 60.0%
GTAGGGCAAGGACACCTCGT+GGG + chr1_3:7055407-7055426 Msa0100590:CDS 60.0%
TTCGACAGACTCCTCCCACG+AGG - chr1_3:7055424-7055443 None:intergenic 60.0%
ACCTCACAGGAGACCGAGAG+GGG - chr1_3:7055534-7055553 None:intergenic 60.0%
GTACCTCACAGGAGACCGAG+AGG - chr1_3:7055536-7055555 None:intergenic 60.0%
! GGTGGGCTCCTAAAACGCCT+AGG - chr1_3:7055721-7055740 None:intergenic 60.0%
!!! GTTTTAGGAGCCCACCGCCA+CGG + chr1_3:7055725-7055744 Msa0100590:CDS 60.0%
GAGTTCTTCTCCGTGGCGGT+GGG - chr1_3:7055738-7055757 None:intergenic 60.0%
GGTGGAGTTCTTCTCCGTGG+CGG - chr1_3:7055742-7055761 None:intergenic 60.0%
! GGTACCGGAGTAGGAGAAGC+AGG + chr1_3:7055978-7055997 Msa0100590:intron 60.0%
GAGCGGTTGCGAATTGGGCT+AGG - chr1_3:7056058-7056077 None:intergenic 60.0%
GGAGGTGAGCGGTTGCGAAT+TGG - chr1_3:7056064-7056083 None:intergenic 60.0%
GCACGCCTATTCACACGAGG+AGG - chr1_3:7056082-7056101 None:intergenic 60.0%
GACGCACGCCTATTCACACG+AGG - chr1_3:7056085-7056104 None:intergenic 60.0%
GTGCGTCATCATCCCTCAGC+AGG + chr1_3:7056098-7056117 Msa0100590:CDS 60.0%
GCAGGAGTCCATCTCGATCC+AGG + chr1_3:7056116-7056135 Msa0100590:CDS 60.0%
GTCCTCGTGCTCTATCGCGG+AGG + chr1_3:7054960-7054979 Msa0100590:CDS 65.0%
CTCCTCCGCGATAGAGCACG+AGG - chr1_3:7054965-7054984 None:intergenic 65.0%
GTCAGCAGAAGCCCCGTGAG+AGG + chr1_3:7055034-7055053 Msa0100590:CDS 65.0%
AAGCCCCGTGAGAGGGAGGA+AGG + chr1_3:7055042-7055061 Msa0100590:CDS 65.0%
AGCCCCGTGAGAGGGAGGAA+GGG + chr1_3:7055043-7055062 Msa0100590:CDS 65.0%
TCCCCTTCCTCCCTCTCACG+GGG - chr1_3:7055048-7055067 None:intergenic 65.0%
CTCCCCTTCCTCCCTCTCAC+GGG - chr1_3:7055049-7055068 None:intergenic 65.0%
CGTAGGGCAAGGACACCTCG+TGG + chr1_3:7055406-7055425 Msa0100590:CDS 65.0%
CCTCACAGGAGACCGAGAGG+GGG - chr1_3:7055533-7055552 None:intergenic 65.0%
GGAGTTCTTCTCCGTGGCGG+TGG - chr1_3:7055739-7055758 None:intergenic 65.0%
GCCCACCTTACCGAGCACGA+AGG + chr1_3:7056020-7056039 Msa0100590:CDS 65.0%
GGAGGGGGTGGGCATGCTAG+AGG + chr1_3:7054602-7054621 Msa0100590:CDS 70.0%
GGGGGTGGGCATGCTAGAGG+AGG + chr1_3:7054605-7054624 Msa0100590:CDS 70.0%
GCAGAAGCCCCGTGAGAGGG+AGG + chr1_3:7055038-7055057 Msa0100590:CDS 70.0%
GCCCCGTGAGAGGGAGGAAG+GGG + chr1_3:7055044-7055063 Msa0100590:CDS 70.0%
GGGCAAGGACACCTCGTGGG+AGG + chr1_3:7055410-7055429 Msa0100590:CDS 70.0%
CCCCCTCTCGGTCTCCTGTG+AGG + chr1_3:7055530-7055549 Msa0100590:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 7048929 7056779 7048929 ID=Msa0100590;Name=Msa0100590
chr1_3 mRNA 7048929 7056779 7048929 ID=Msa0100590-mRNA-1;Parent=Msa0100590;Name=Msa0100590-mRNA-1;_AED=0.10;_eAED=0.10;_QI=101|1|1|1|0.92|0.85|14|515|772
chr1_3 exon 7048929 7049007 7048929 ID=Msa0100590-mRNA-1:exon:2699;Parent=Msa0100590-mRNA-1
chr1_3 exon 7050541 7050640 7050541 ID=Msa0100590-mRNA-1:exon:2700;Parent=Msa0100590-mRNA-1
chr1_3 exon 7050718 7050772 7050718 ID=Msa0100590-mRNA-1:exon:2701;Parent=Msa0100590-mRNA-1
chr1_3 exon 7051000 7051088 7051000 ID=Msa0100590-mRNA-1:exon:2702;Parent=Msa0100590-mRNA-1
chr1_3 exon 7051397 7051421 7051397 ID=Msa0100590-mRNA-1:exon:2703;Parent=Msa0100590-mRNA-1
chr1_3 exon 7052014 7052049 7052014 ID=Msa0100590-mRNA-1:exon:2704;Parent=Msa0100590-mRNA-1
chr1_3 exon 7052161 7052278 7052161 ID=Msa0100590-mRNA-1:exon:2705;Parent=Msa0100590-mRNA-1
chr1_3 exon 7052831 7052958 7052831 ID=Msa0100590-mRNA-1:exon:2706;Parent=Msa0100590-mRNA-1
chr1_3 exon 7053146 7053503 7053146 ID=Msa0100590-mRNA-1:exon:2707;Parent=Msa0100590-mRNA-1
chr1_3 exon 7053840 7053958 7053840 ID=Msa0100590-mRNA-1:exon:2708;Parent=Msa0100590-mRNA-1
chr1_3 exon 7054541 7054745 7054541 ID=Msa0100590-mRNA-1:exon:2709;Parent=Msa0100590-mRNA-1
chr1_3 exon 7054835 7055584 7054835 ID=Msa0100590-mRNA-1:exon:2710;Parent=Msa0100590-mRNA-1
chr1_3 exon 7055693 7055764 7055693 ID=Msa0100590-mRNA-1:exon:2711;Parent=Msa0100590-mRNA-1
chr1_3 exon 7055979 7056779 7055979 ID=Msa0100590-mRNA-1:exon:2712;Parent=Msa0100590-mRNA-1
chr1_3 five_prime_UTR 7048929 7049007 7048929 ID=Msa0100590-mRNA-1:five_prime_utr;Parent=Msa0100590-mRNA-1
chr1_3 five_prime_UTR 7050541 7050562 7050541 ID=Msa0100590-mRNA-1:five_prime_utr;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7050563 7050640 7050563 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7050718 7050772 7050718 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7051000 7051088 7051000 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7051397 7051421 7051397 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7052014 7052049 7052014 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7052161 7052278 7052161 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7052831 7052958 7052831 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7053146 7053503 7053146 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7053840 7053958 7053840 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7054541 7054745 7054541 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7054835 7055584 7054835 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7055693 7055764 7055693 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 CDS 7055979 7056264 7055979 ID=Msa0100590-mRNA-1:cds;Parent=Msa0100590-mRNA-1
chr1_3 three_prime_UTR 7056265 7056779 7056265 ID=Msa0100590-mRNA-1:three_prime_utr;Parent=Msa0100590-mRNA-1
Gene Sequence

>Msa0100590

ATGGCAAAGAAGAAAAACCCCATGGTGTTTATGGACGTGTCTGTAGACGGGGATCCTTATGAAAGAATGGTTTTTGAGCTTTTCTACGATGTTGCTCCAAAGACTGCTGAAAATTTTCGTGCACTGTGTACCGGAGAAAAAGGAGTCAGTCCTAATACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCAGATCGTAAAAGGCTCCATTGTTAAGGGTGGAGACTTTATCAATCGAAATGGGACTGGTGGAGAGAGCATATACCCCAAGTTCCCAGAGGAGTCTCCTAGGCTAAAGCATGATTCTCCAGGCCTTCTATCTATGGCGATTGCTGATCGTGACACTCTTGGTTCACATTTTATCATCACTTTGAAAGCTGATCACCATCTTGATAGGAAGCATGTGGTTTTTGGCAAGCTGTTGCAAGGGTATGATATATTGAAGAAAATTGAAGATGTAGGCAATGAAGAAGGACTCCCAGCCGTAACTGTCAAAATAATTAATTGTGGTGAACACAATGAGGATGGAAAGAAGACTCACAAGTCAAAAATTGGAAGGAATGGATCTTCTGAAGCAAATAGTCATGAAGTGCGGAGAAAGGGAAAGCATAAAAAATCTTCAGGAGACAGAAGGAAGAAGAGAAAACATTACTCATCAGAATCAGATAGTTCCTCAGATTCCGACATGGAATCTTCTGAAAGTGATAGTGACTCTGACTCAGATTTGTCCTCGTCATCTTACACAAGTTCATCTAGTGATGACAGGCGGAGGAAAAGAAAGAGATCTAGGAAAGATAAACATAGACATGGAAAAAGAAGAGATAAACGTCGAGAAAAGAGGCGAAGGAAACAAGATAAGAGATCAAAACGTAAATCAAGGAGGGAATCAGGCAGTCATTCTGATGCAGATAGTGCAAGTAAGAGTAACGATAATTCTAACGGCAAAGGTCTTGATACTCAAGAGAAAATTCTGAAGCAAAAAGATCATTCTCAGATAGATGCTGAAGTCCAGTCATCCTCAGTTTTGGAGAAAGAGTTACCTCCACTGAATCATAAAAAGAGGGAGGGGGTGGGCATGCTAGAGGAGGAAGAATTCCCAAAAGAAAATGGAGCGCAGCCTAGCAACGGCATCAAGGCCAACTATAGACCTGACAGAAGTGAAGAAAGGCAGCATGACGTGATGGATGATAATCCAGGAAAATCTAGGAGTCGAAGCATGAGTCCTAAGCAAACCGTGAGCAAGAGTATGAGTATTAGTCCCAAGTGTGTGTGCAAAAGCCCGAGCATTAGTCCAAAGAGGAGGTTTAGCAGAAGTCCAAGTGGTAGTAAAAGTCCTCGTGCTCTATCGCGGAGGAGTTTGAGCAGGAGTCCTGTTAGAAGAATAAGCAGGAGTCTAAACAGAAACGTCAGCAGAAGCCCCGTGAGAGGGAGGAAGGGGAGAAGTATCAGTAGAAGCCCTATGAGAACAACACACATTCATAGAAGTGTCAGCAAGAGCCCTGTGAGAAGTCCCGATCGTAGAAGTCTTAGCAAGAGCCCTGCCAGATCTGTTTCTCAAAGCCGTAGGAGTTCTGCTAGAGTATCATCACGAAGAACAGTCAGTAGGAGTCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCATCTGCCAGAAGTCTCAGCAGGAGTTCCGGCCGAGTTCCTTTGAGAAGCATTAGCCGAAGTCCTGTCAGAGTGGCAAGCAGAGGCAATCACCGCAGCTATTCCAGGAGTCGTAGCCCTGTTCGTAGGGCAAGGACACCTCGTGGGAGGAGTCTGTCGAAGAGTGTGTCACCCGATGCTTCACCAAAACGTATCAGAAGGGGAAGAGGTTTCAGTGAAAGATACTCTTATGCTAGAAGGTATAGAACCCCCTCTCGGTCTCCTGTGAGGTACCGCTATAATGGAAGGAATGACCGTGACAGATATTCAGGATACAGAAGGTACTCCCCTAGGCGTTTTAGGAGCCCACCGCCACGGAGAAGAACTCCACCAAGGTACCGGAGTAGGAGAAGCAGGACACCGTCTATATCACGAAGCCCACCTTACCGAGCACGAAGGTATAGCCCAAGCCCTAGCCCAATTCGCAACCGCTCACCTCCTCGTGTGAATAGGCGTGCGTCATCATCCCTCAGCAGGAGTCCATCTCGATCCAGGTCTTCTGTGGAATCACTATCTCCAAGAAAAGTAAGCAAAGATAACAGGTCAAGGTCTCCTTCTAGAAGCTCAGACGGAAAGAAAGGCCTGGTCTCTTATGGAAATGGTTCTCCTGATTCAAGCTAA
Protein sequence

>Msa0100590

MAKKKNPMVFMDVSVDGDPYERMVFELFYDVAPKTAENFRALCTGEKGVSPNTGKSLHYKGSFFHQIVKGSIVKGGDFINRNGTGGESIYPKFPEESPRLKHDSPGLLSMAIADRDTLGSHFIITLKADHHLDRKHVVFGKLLQGYDILKKIEDVGNEEGLPAVTVKIINCGEHNEDGKKTHKSKIGRNGSSEANSHEVRRKGKHKKSSGDRRKKRKHYSSESDSSSDSDMESSESDSDSDSDLSSSSYTSSSSDDRRRKRKRSRKDKHRHGKRRDKRREKRRRKQDKRSKRKSRRESGSHSDADSASKSNDNSNGKGLDTQEKILKQKDHSQIDAEVQSSSVLEKELPPLNHKKREGVGMLEEEEFPKENGAQPSNGIKANYRPDRSEERQHDVMDDNPGKSRSRSMSPKQTVSKSMSISPKCVCKSPSISPKRRFSRSPSGSKSPRALSRRSLSRSPVRRISRSLNRNVSRSPVRGRKGRSISRSPMRTTHIHRSVSKSPVRSPDRRSLSKSPARSVSQSRRSSARVSSRRTVSRSPVRVSRKSISRSPVRSSARSLSRSSGRVPLRSISRSPVRVASRGNHRSYSRSRSPVRRARTPRGRSLSKSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRYRYNGRNDRDRYSGYRRYSPRRFRSPPPRRRTPPRYRSRRSRTPSISRSPPYRARRYSPSPSPIRNRSPPRVNRRASSSLSRSPSRSRSSVESLSPRKVSKDNRSRSPSRSSDGKKGLVSYGNGSPDSS*