AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050520 MtrunA17_Chr1g0149061 96.891 772 24 0 1 772 1 772 0.0 1449
Msa0050520 MtrunA17_Chr3g0138061 77.727 220 48 1 1 219 4 223 1.07e-120 384
Msa0050520 MtrunA17_Chr7g0260441 60.920 174 67 1 1 173 1 174 4.52e-66 231
Msa0050520 MtrunA17_Chr7g0260441 39.474 266 93 12 550 771 407 648 1.52e-18 90.5
Msa0050520 MtrunA17_Chr4g0038431 55.030 169 74 2 6 173 3 170 1.87e-52 179
Msa0050520 MtrunA17_Chr3g0113441 54.819 166 73 2 9 173 66 230 1.43e-49 174
Msa0050520 MtrunA17_Chr7g0274841 50.888 169 81 2 6 173 3 170 5.01e-49 170
Msa0050520 MtrunA17_Chr4g0045321 52.096 167 78 2 9 173 6 172 5.37e-49 176
Msa0050520 MtrunA17_Chr3g0104751 54.217 166 74 2 9 173 36 200 7.98e-48 168
Msa0050520 MtrunA17_Chr8g0374621 50.575 174 82 3 6 176 3 175 3.77e-46 169
Msa0050520 MtrunA17_Chr3g0145501 46.927 179 93 2 9 186 14 191 4.80e-46 162
Msa0050520 MtrunA17_Chr7g0270991 44.262 183 86 4 1 178 90 261 5.31e-39 145
Msa0050520 MtrunA17_Chr8g0353571 44.186 172 90 4 5 173 16 184 2.78e-37 137
Msa0050520 MtrunA17_Chr1g0193711 45.304 181 88 3 1 178 79 251 1.12e-35 135
Msa0050520 MtrunA17_Chr4g0037281 47.024 168 85 4 9 173 48 214 1.63e-35 134
Msa0050520 MtrunA17_Chr1g0213971 45.294 170 80 4 9 173 79 240 1.43e-33 129
Msa0050520 MtrunA17_Chr8g0351571 38.462 130 66 4 26 153 15 132 9.66e-19 84.0
Msa0050520 MtrunA17_Chr2g0321111 38.462 143 73 5 32 171 482 612 1.22e-17 87.4
Msa0050520 MtrunA17_Chr7g0266721 41.667 132 63 4 26 155 24 143 2.58e-17 80.1
Msa0050520 MtrunA17_Chr5g0401141 38.346 133 68 5 25 155 358 478 7.45e-16 81.6
Msa0050520 MtrunA17_Chr6g0484281 32.484 157 83 5 23 168 12 156 4.20e-14 75.9
Msa0050520 MtrunA17_Chr8g0357591 31.847 157 84 5 23 168 12 156 3.60e-13 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050520 AT4G32420.1 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0050520 AT4G32420.5 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0050520 AT4G32420.3 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0050520 AT4G32420.6 71.429 175 49 1 1 174 1 175 1.03e-83 284
Msa0050520 AT4G32420.4 71.875 160 44 1 1 159 1 160 1.79e-75 261
Msa0050520 AT3G63400.2 60.920 174 67 1 1 173 1 174 1.63e-67 228
Msa0050520 AT3G63400.3 60.920 174 67 1 1 173 1 174 2.20e-66 231
Msa0050520 AT3G63400.4 60.920 174 67 1 1 173 1 174 2.20e-66 231
Msa0050520 AT3G63400.1 60.920 174 67 1 1 173 1 174 2.20e-66 231
Msa0050520 AT3G56070.1 53.254 169 77 2 6 173 3 170 1.08e-50 175
Msa0050520 AT3G56070.2 53.254 169 77 2 6 173 3 170 1.08e-50 175
Msa0050520 AT4G38740.1 53.254 169 75 4 7 173 4 170 3.66e-50 174
Msa0050520 AT5G58710.1 53.012 166 76 2 9 173 37 201 7.26e-50 174
Msa0050520 AT2G29960.1 53.614 166 75 2 9 173 34 198 1.94e-49 173
Msa0050520 AT2G29960.3 53.614 166 75 2 9 173 34 198 1.94e-49 173
Msa0050520 AT4G34870.1 50.888 169 81 2 6 173 3 170 1.14e-48 169
Msa0050520 AT2G21130.1 51.479 169 80 2 6 173 4 171 1.29e-48 169
Msa0050520 AT3G55920.1 50.000 166 81 2 9 173 61 225 6.85e-48 169
Msa0050520 AT2G15790.1 52.695 167 77 2 9 173 6 172 1.14e-47 173
Msa0050520 AT2G16600.1 49.112 169 84 2 6 173 4 171 2.45e-45 160
Msa0050520 AT2G29960.2 50.602 166 70 3 9 173 34 188 8.22e-44 157
Msa0050520 AT2G38730.1 47.674 172 84 4 5 173 30 198 7.86e-39 143
Msa0050520 AT3G62030.3 48.630 146 66 2 9 153 96 233 8.63e-38 142
Msa0050520 AT3G62030.1 48.630 146 66 2 9 153 97 234 9.12e-38 142
Msa0050520 AT3G62030.2 48.630 146 66 2 9 153 150 287 1.05e-36 140
Msa0050520 AT4G34960.1 44.444 171 92 3 9 177 49 218 1.95e-36 137
Msa0050520 AT2G16600.2 43.195 169 72 2 6 173 4 149 4.44e-35 130
Msa0050520 AT5G13120.1 43.275 171 82 5 9 173 92 253 2.65e-34 132
Msa0050520 AT5G13120.2 43.275 171 82 5 9 173 88 249 5.39e-34 131
Msa0050520 AT3G22920.1 44.828 174 80 8 6 173 3 166 1.55e-32 126
Msa0050520 AT4G34960.2 48.305 118 59 2 9 125 49 165 7.94e-30 116
Msa0050520 AT4G32420.2 66.154 65 22 0 110 174 1 65 2.42e-22 103
Msa0050520 AT1G01940.1 40.000 130 64 4 26 153 15 132 4.59e-20 88.2
Msa0050520 AT2G36130.1 40.152 132 65 4 26 155 24 143 4.22e-18 82.8
Msa0050520 AT3G44600.1 37.162 148 78 5 27 171 491 626 1.33e-17 87.8
Msa0050520 AT5G67530.1 37.162 148 78 6 25 169 357 492 4.27e-16 82.8
Msa0050520 AT1G53720.1 33.571 140 71 4 23 152 12 139 8.63e-13 72.0
Msa0050520 AT1G53720.2 33.571 140 71 4 23 152 12 139 1.59e-11 67.0

Find 227 sgRNAs with CRISPR-Local

Find 561 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGCTTCCAGCTCATTTA+AGG 0.110768 1_2:-4431521 None:intergenic
GAGATTTGGCCTATCCTTTA+TGG 0.157069 1_2:+4431819 Msa0050520:three_prime_UTR
CTCTTTCTTGACACTCTTAC+AGG 0.211910 1_2:-4430455 None:intergenic
TTGCGAATTGGGCTAGGGCT+TGG 0.226989 1_2:-4431266 None:intergenic
CTTTCTGCTCTCAGATATTC+AGG 0.239140 1_2:+4430896 Msa0050520:intron
TTCTTCCATCAGATCGTAAA+AGG 0.249523 1_2:+4426237 Msa0050520:CDS
GTACCGAATTCGGACCTTTC+AGG 0.264264 1_2:+4431489 Msa0050520:three_prime_UTR
GGAACTCCTGCTGAGACTTC+TGG 0.281243 1_2:-4430507 None:intergenic
TACTACAAGACACTGATAAC+TGG 0.294409 1_2:-4431774 None:intergenic
GAAGAATTCCCAAAAGAAAA+TGG 0.301545 1_2:+4429844 Msa0050520:CDS
CTTCCCCTTCTGATACGTTT+TGG 0.307276 1_2:-4430683 None:intergenic
TTTCCCCTTTCAGGAGAAAA+AGG 0.308702 1_2:+4426171 Msa0050520:intron
TAAAATACCGTTCGTGTGTC+TGG 0.318072 1_2:+4431908 Msa0050520:three_prime_UTR
TGCGAATTGGGCTAGGGCTT+GGG 0.324125 1_2:-4431265 None:intergenic
GGAGGTGAGCGGTTGCGAAT+TGG 0.325475 1_2:-4431278 None:intergenic
GACACTGATAACTGGGGATA+TGG 0.325870 1_2:-4431766 None:intergenic
CTTCACCTTTAGCTTGAATC+AGG 0.326116 1_2:-4431467 None:intergenic
TTGTGTGGTGTCAGGGAATC+AGG 0.326784 1_2:+4429041 Msa0050520:intron
CTCCTGCTTATTCTTCTAAC+AGG 0.326957 1_2:-4430215 None:intergenic
TTCTCCAGGCCTTCTATCTA+TGG 0.340779 1_2:+4427401 Msa0050520:CDS
GAGGTGAGCGGTTGCGAATT+GGG 0.350999 1_2:-4431277 None:intergenic
AGTCCAGTCATCCTCAGTTT+TGG 0.353871 1_2:+4429762 Msa0050520:CDS
ATACTGCTTTACCTGCTTGC+TGG 0.356419 1_2:+4431560 Msa0050520:three_prime_UTR
ATGGCATGTTGAAAGATAAT+AGG 0.357054 1_2:+4431652 Msa0050520:three_prime_UTR
AAGAAAGGCCTGGTCTCTTA+TGG 0.357463 1_2:+4431434 Msa0050520:CDS
AGCATTCTAACCTGGGAACT+TGG 0.364036 1_2:-4427253 None:intergenic
GAAAAGTAAGCAAAGATAAC+AGG 0.371011 1_2:+4431381 Msa0050520:CDS
AATTATCATGCTAACCATAA+AGG 0.371072 1_2:-4431833 None:intergenic
GAGTTTAACTGATGGAGATT+TGG 0.372096 1_2:+4431805 Msa0050520:three_prime_UTR
CTTCTGCTAAACCTCCTCTT+TGG 0.376794 1_2:-4430137 None:intergenic
TGAATGTGTGTTGTTCTCAT+AGG 0.378971 1_2:-4430302 None:intergenic
GGTGTCCTTGCCCTACGAAC+AGG 0.379140 1_2:-4430617 None:intergenic
CTCCCCTTCCTCCCTCTCAC+GGG 0.379675 1_2:-4430263 None:intergenic
TGCCTTTCTTCACTTCTGTC+AGG 0.388286 1_2:-4429904 None:intergenic
TAAAGGTGAAGTACCGAATT+CGG 0.397418 1_2:+4431479 Msa0050520:exon
TTTCCGTCTGAGCTTCTAGA+AGG 0.397442 1_2:-4431413 None:intergenic
CACACATCTATATGGGTCAT+AGG 0.398441 1_2:-4431859 None:intergenic
AAAGGAGTCAGTCCTAATAC+TGG 0.399979 1_2:+4426189 Msa0050520:CDS
GAGCGGTTGCGAATTGGGCT+AGG 0.400236 1_2:-4431272 None:intergenic
GGAGTTCTTCTCCGTGGCGG+TGG 0.402817 1_2:-4430953 None:intergenic
GCCCCGTGAGAGGGAGGAAG+GGG 0.406880 1_2:+4430261 Msa0050520:CDS
AAAGATCATTCTCAGATAGA+TGG 0.415084 1_2:+4429152 Msa0050520:CDS
ACGAACAGGGCTACGACTCC+TGG 0.416701 1_2:-4430603 None:intergenic
AGAATTGAGAATCTACGCTT+TGG 0.417082 1_2:-4424139 None:intergenic
AAGCCCCGTGAGAGGGAGGA+AGG 0.417883 1_2:+4430259 Msa0050520:CDS
CGTAAAAGGCTCCATTGTTA+AGG 0.420698 1_2:+4426251 Msa0050520:CDS
AAAGATACTCTTATGCTAGA+AGG 0.424339 1_2:+4430717 Msa0050520:CDS
GAGATAAACGTCGAGAAAAG+AGG 0.427527 1_2:+4428655 Msa0050520:CDS
TTCCCTGAAAGGTCCGAATT+CGG 0.432085 1_2:-4431492 None:intergenic
ATTGCTGATCGTGACACTCT+TGG 0.435667 1_2:+4427426 Msa0050520:CDS
ATCCTCGTAGTAAGTTGAAA+TGG 0.436312 1_2:+4431633 Msa0050520:three_prime_UTR
GCAATCACCGCAGCTATTCC+AGG 0.436681 1_2:+4430585 Msa0050520:CDS
TCCTCTTTGGACTAATGCTC+GGG 0.437106 1_2:-4430124 None:intergenic
GCTCACCTCCTCGTGTGAAT+AGG 0.442557 1_2:+4431291 Msa0050520:CDS
GAATTGAGAATCTACGCTTT+GGG 0.448105 1_2:-4424138 None:intergenic
AGCCCCGTGAGAGGGAGGAA+GGG 0.450891 1_2:+4430260 Msa0050520:CDS
CTCTTGCTCACGGTTTGCTT+AGG 0.451493 1_2:-4430068 None:intergenic
GGCCTGGTCTCTTATGGAAA+TGG 0.453229 1_2:+4431440 Msa0050520:CDS
CAGCAATCGCCATAGATAGA+AGG 0.454132 1_2:-4427410 None:intergenic
CGGGGATCCTTATGAAAGAA+TGG 0.458164 1_2:+4425794 Msa0050520:CDS
GAATGTGTGTTGTTCTCATA+GGG 0.458247 1_2:-4430301 None:intergenic
CTACGATCGGGACTTCTCAC+AGG 0.459140 1_2:-4430344 None:intergenic
TCGATATTTGCTCGGACGTG+TGG 0.459478 1_2:+4431729 Msa0050520:three_prime_UTR
ACTTCTGTCAGGTCTATAGT+TGG 0.460346 1_2:-4429893 None:intergenic
TACCGAATTCGGACCTTTCA+GGG 0.460747 1_2:+4431490 Msa0050520:three_prime_UTR
GCATTCTAACCTGGGAACTT+GGG 0.462406 1_2:-4427252 None:intergenic
TCTCCCCTTCCTCCCTCTCA+CGG 0.463089 1_2:-4430264 None:intergenic
CCTCTGCTTGCCACTCTGAC+AGG 0.466727 1_2:-4430563 None:intergenic
CTTCTGGCAGATGATCTAAC+TGG 0.466999 1_2:-4430491 None:intergenic
CTGATAACTGGGGATATGGA+TGG 0.468909 1_2:-4431762 None:intergenic
CTCCTCTTTGGACTAATGCT+CGG 0.471032 1_2:-4430125 None:intergenic
GCAGGAGTCCATCTCGATCC+AGG 0.473773 1_2:+4431333 Msa0050520:CDS
AGAAGTCTCAGCAGGAGTTC+CGG 0.476303 1_2:+4430509 Msa0050520:CDS
ATCGCCATAGATAGAAGGCC+TGG 0.476516 1_2:-4427405 None:intergenic
TACCTTCGTGCTCGGTAAGG+TGG 0.478800 1_2:-4431239 None:intergenic
TAGTCATGAAGTGCGGAGAA+AGG 0.479480 1_2:+4428416 Msa0050520:CDS
GGAGACTTTATCAATCGAAA+TGG 0.482357 1_2:+4426584 Msa0050520:CDS
AGTCATGAAGTGCGGAGAAA+GGG 0.483951 1_2:+4428417 Msa0050520:CDS
GCAGCCTAGCAACGGCATCA+AGG 0.484401 1_2:+4429870 Msa0050520:CDS
TTGAAGAAAATTGAAGATGT+AGG 0.484894 1_2:+4428089 Msa0050520:CDS
CCTGTGAGGTACCGCTATAA+TGG 0.487018 1_2:+4430761 Msa0050520:CDS
CGATATTTGCTCGGACGTGT+GGG 0.487868 1_2:+4431730 Msa0050520:three_prime_UTR
ATGGAAGGAATGACCGTGAC+AGG 0.488207 1_2:+4430780 Msa0050520:CDS
TGGAAAATCACTGCACTACA+AGG 0.491246 1_2:+4426209 Msa0050520:CDS
GAGTTCTTCTCCGTGGCGGT+GGG 0.491381 1_2:-4430952 None:intergenic
GGAGGAAAAGAAAGAGATCT+AGG 0.492138 1_2:+4428604 Msa0050520:CDS
GATAAATCAATTCCTAGCAT+TGG 0.493739 1_2:-4431613 None:intergenic
TGTGTCTGGAAGTTTATGTA+TGG 0.494033 1_2:+4431922 Msa0050520:three_prime_UTR
TTATGGACGTGTCTGTAGAC+GGG 0.495599 1_2:+4425775 Msa0050520:CDS
AAGCTGATCACCATCTTGAT+AGG 0.495613 1_2:+4427472 Msa0050520:CDS
ATGATAATCCAGGAAAATCT+AGG 0.495881 1_2:+4429941 Msa0050520:CDS
CTTTGAGAAACAGATCTGGC+AGG 0.498898 1_2:-4430383 None:intergenic
GGAGTCGTAGCCCTGTTCGT+AGG 0.504871 1_2:+4430606 Msa0050520:CDS
TAAGGTGAGGTTTCCCTGAA+AGG 0.506897 1_2:-4431503 None:intergenic
AAACCTCACCTTAAATGAGC+TGG 0.508169 1_2:+4431513 Msa0050520:three_prime_UTR
ACCTTCGTGCTCGGTAAGGT+GGG 0.510824 1_2:-4431238 None:intergenic
AGGCTAAAGCATGATTCTCC+AGG 0.510991 1_2:+4427387 Msa0050520:CDS
GTGCGTCATCATCCCTCAGC+AGG 0.515147 1_2:+4431315 Msa0050520:CDS
AGCGGTTGCGAATTGGGCTA+GGG 0.516195 1_2:-4431271 None:intergenic
CCATTATAGCGGTACCTCAC+AGG 0.516542 1_2:-4430761 None:intergenic
TTTATGGACGTGTCTGTAGA+CGG 0.517412 1_2:+4425774 Msa0050520:CDS
AGCATATACCCCAAGTTCCC+AGG 0.517801 1_2:+4427243 Msa0050520:CDS
AGAAGCTCAGACGGAAAGAA+AGG 0.519047 1_2:+4431419 Msa0050520:CDS
GTGTCCTGCTTCTCCTACTC+CGG 0.520890 1_2:-4431199 None:intergenic
AGAGATCAAAACGTAAATCA+AGG 0.521159 1_2:+4428694 Msa0050520:CDS
TAGTGATTCCACAGAAGACC+TGG 0.522322 1_2:-4431351 None:intergenic
GGTACCGGAGTAGGAGAAGC+AGG 0.524088 1_2:+4431195 Msa0050520:intron
GAGTCGTAGCCCTGTTCGTA+GGG 0.524982 1_2:+4430607 Msa0050520:CDS
TTGGCCTTGATGCCGTTGCT+AGG 0.525249 1_2:-4429874 None:intergenic
GTTCTCCTGATTCAAGCTAA+AGG 0.528237 1_2:+4431462 Msa0050520:CDS
CTATACCTTCGTGCTCGGTA+AGG 0.528467 1_2:-4431242 None:intergenic
AAGTTTGAAAATAACCTTGG+TGG 0.528572 1_2:-4430974 None:intergenic
TGATAACTGGGGATATGGAT+GGG 0.534088 1_2:-4431761 None:intergenic
GTGGGCTCCTAAAACGCCTA+GGG 0.534974 1_2:-4430934 None:intergenic
TCTCCAAAACTGAGGATGAC+TGG 0.537196 1_2:-4429765 None:intergenic
TCAGCAGAAGCCCCGTGAGA+GGG 0.541353 1_2:+4430252 Msa0050520:CDS
AGTAACTAATTCCAGCAAGC+AGG 0.545204 1_2:-4431571 None:intergenic
GACCTGACAGAAGTGAAGAA+AGG 0.545679 1_2:+4429902 Msa0050520:CDS
ATCTCGATCCAGGTCTTCTG+TGG 0.546091 1_2:+4431343 Msa0050520:CDS
CTCAGACGGAAAGAAAGGCC+TGG 0.546220 1_2:+4431424 Msa0050520:CDS
TCTGGAAGTTTATGTATGGA+TGG 0.548483 1_2:+4431926 Msa0050520:three_prime_UTR
AGTAAGTATCGATATTTGCT+CGG 0.548811 1_2:+4431721 Msa0050520:three_prime_UTR
ACTACAAGACACTGATAACT+GGG 0.549548 1_2:-4431773 None:intergenic
CATTCTAACCTGGGAACTTG+GGG 0.552470 1_2:-4427251 None:intergenic
ATTCTTCATAAACCAATGCT+AGG 0.554545 1_2:+4431601 Msa0050520:three_prime_UTR
CATCTGCCAGAAGTCTCAGC+AGG 0.557853 1_2:+4430501 Msa0050520:CDS
GGTGGGCTCCTAAAACGCCT+AGG 0.559539 1_2:-4430935 None:intergenic
AAACGTATCAGAAGGGGAAG+AGG 0.560741 1_2:+4430686 Msa0050520:CDS
CTTCCAGCTCATTTAAGGTG+AGG 0.562565 1_2:-4431516 None:intergenic
ACGGCTTTGAGAAACAGATC+TGG 0.562906 1_2:-4430387 None:intergenic
GCAGAAGCCCCGTGAGAGGG+AGG 0.564588 1_2:+4430255 Msa0050520:CDS
TCCCCTTCCTCCCTCTCACG+GGG 0.567721 1_2:-4430262 None:intergenic
AGATTCCATGTCGGAATCTG+AGG 0.568884 1_2:-4428508 None:intergenic
AACGATAATTCTAACGGCAA+AGG 0.571157 1_2:+4429098 Msa0050520:CDS
GCTACTTAATTTACCTGTCA+CGG 0.571224 1_2:-4430793 None:intergenic
TTGCTAAGACTTCTACGATC+GGG 0.572343 1_2:-4430356 None:intergenic
TGTCAAGAAAGAGCATAAGC+AGG 0.573617 1_2:+4430465 Msa0050520:CDS
AAAGTCCTCGTGCTCTATCG+CGG 0.575279 1_2:+4430174 Msa0050520:CDS
GAAGATGTAGGCAATGAAGA+AGG 0.580162 1_2:+4428101 Msa0050520:CDS
GACACGTCCATAAACACCAT+GGG 0.580289 1_2:-4425765 None:intergenic
ATACTCTAGCAGAACTCCTA+CGG 0.580573 1_2:-4430406 None:intergenic
TCATGCTAACCATAAAGGAT+AGG 0.580961 1_2:-4431828 None:intergenic
TATCGCGGAGGAGTTTGAGC+AGG 0.581388 1_2:+4430189 Msa0050520:CDS
TTGGGCTATACCTTCGTGCT+CGG 0.581450 1_2:-4431247 None:intergenic
GTCAGCAGAAGCCCCGTGAG+AGG 0.581670 1_2:+4430251 Msa0050520:CDS
GCTTCTCAAAGGAACTCGGC+CGG 0.583443 1_2:-4430528 None:intergenic
CTTCACCAAAACGTATCAGA+AGG 0.584180 1_2:+4430678 Msa0050520:CDS
CAAGTTCATCTAGTGATGAC+AGG 0.586648 1_2:+4428580 Msa0050520:CDS
TCGAGATGGACTCCTGCTGA+GGG 0.589178 1_2:-4431327 None:intergenic
TCTCCTTCTAGAAGCTCAGA+CGG 0.589827 1_2:+4431410 Msa0050520:CDS
GTGTCCTTGCCCTACGAACA+GGG 0.590564 1_2:-4430616 None:intergenic
GACGTGATGGATGATAATCC+AGG 0.591026 1_2:+4429931 Msa0050520:CDS
AATACTCATACTCTTGCTCA+CGG 0.593043 1_2:-4430078 None:intergenic
AAAAGCATGAGTTTAACTGA+TGG 0.593260 1_2:+4431797 Msa0050520:three_prime_UTR
ACAGAAGACCTGGATCGAGA+TGG 0.594604 1_2:-4431341 None:intergenic
GGAGAATCATGCTTTAGCCT+AGG 0.596116 1_2:-4427384 None:intergenic
AAGAGTAACGATAATTCTAA+CGG 0.596671 1_2:+4429092 Msa0050520:CDS
TTCACCAAAACGTATCAGAA+GGG 0.600691 1_2:+4430679 Msa0050520:CDS
AACGTCGAGAAAAGAGGCGA+AGG 0.601122 1_2:+4428661 Msa0050520:CDS
CCTGTCAGAGTGGCAAGCAG+AGG 0.601861 1_2:+4430563 Msa0050520:CDS
TAAGCAAAGATAACAGGTCA+AGG 0.602811 1_2:+4431387 Msa0050520:CDS
AATGGAGCGCAGCCTAGCAA+CGG 0.602971 1_2:+4429862 Msa0050520:CDS
ACCTCACAGGAGACCGAGAG+GGG 0.604150 1_2:-4430748 None:intergenic
GTAGCCCTGTTCGTAGGGCA+AGG 0.604255 1_2:+4430612 Msa0050520:CDS
GATAAACAGACCTATCAAGA+TGG 0.604811 1_2:-4427482 None:intergenic
CTATATGTAGGTACCGGAGT+AGG 0.605022 1_2:+4431186 Msa0050520:intron
TTTGAGAAACAGATCTGGCA+GGG 0.605173 1_2:-4430382 None:intergenic
ATCGAGATGGACTCCTGCTG+AGG 0.606352 1_2:-4431328 None:intergenic
AACCATTTCCATAAGAGACC+AGG 0.606821 1_2:-4431442 None:intergenic
GATAACTGGGGATATGGATG+GGG 0.611519 1_2:-4431760 None:intergenic
CTTGCTAAGACTTCTACGAT+CGG 0.613367 1_2:-4430357 None:intergenic
TGAGGTACCGCTATAATGGA+AGG 0.613583 1_2:+4430765 Msa0050520:CDS
GATACAGAAGGTACTCCCCT+AGG 0.614974 1_2:+4430918 Msa0050520:CDS
CATCTAGTGATGACAGGCGG+AGG 0.620885 1_2:+4428586 Msa0050520:CDS
AGAAAGGCAGCATGACGTGA+TGG 0.628293 1_2:+4429918 Msa0050520:CDS
GCCCGAGCATTAGTCCAAAG+AGG 0.628924 1_2:+4430123 Msa0050520:CDS
CTGGAAGTTTATGTATGGAT+GGG 0.629122 1_2:+4431927 Msa0050520:three_prime_UTR
TACGATCGGGACTTCTCACA+GGG 0.630815 1_2:-4430343 None:intergenic
CGAGCATTAGTCCAAAGAGG+AGG 0.631871 1_2:+4430126 Msa0050520:CDS
TTGCCACTCTGACAGGACTT+CGG 0.633300 1_2:-4430556 None:intergenic
TCAGATATTCAGGATACAGA+AGG 0.633643 1_2:+4430906 Msa0050520:intron
GATCTGTTTCTCAAAGCCGT+AGG 0.636621 1_2:+4430390 Msa0050520:CDS
TACCTCACAGGAGACCGAGA+GGG 0.636761 1_2:-4430749 None:intergenic
GGGCAAGGACACCTCGTGGG+AGG 0.636939 1_2:+4430627 Msa0050520:CDS
GTCCTGTTAGAAGAATAAGC+AGG 0.637563 1_2:+4430213 Msa0050520:CDS
GGTGGAGTTCTTCTCCGTGG+CGG 0.641967 1_2:-4430956 None:intergenic
CATCACGAAGAACAGTCAGT+AGG 0.643686 1_2:+4430429 Msa0050520:CDS
GGAAAATCACTGCACTACAA+GGG 0.644386 1_2:+4426210 Msa0050520:CDS
TAATGCTTCTCAAAGGAACT+CGG 0.644665 1_2:-4430532 None:intergenic
CTCCTCCGCGATAGAGCACG+AGG 0.645637 1_2:-4430179 None:intergenic
AGGAAAGATAAACATAGACA+TGG 0.646477 1_2:+4428624 Msa0050520:CDS
GGTCATTCCTTCCATTATAG+CGG 0.649077 1_2:-4430772 None:intergenic
TACGACTCCTGGAATAGCTG+CGG 0.649288 1_2:-4430592 None:intergenic
TCACCAAAACGTATCAGAAG+GGG 0.649609 1_2:+4430680 Msa0050520:CDS
GGTGGGCTTCGTGATATAGA+CGG 0.650609 1_2:-4431221 None:intergenic
CGTAGGGCAAGGACACCTCG+TGG 0.652658 1_2:+4430623 Msa0050520:CDS
CTTCGGCTAATGCTTCTCAA+AGG 0.656324 1_2:-4430539 None:intergenic
ACTGTCAAAATAATTAATTG+TGG 0.662678 1_2:+4428137 Msa0050520:CDS
TATGGACGTGTCTGTAGACG+GGG 0.663263 1_2:+4425776 Msa0050520:CDS
CTTGGTGGAGTTCTTCTCCG+TGG 0.663626 1_2:-4430959 None:intergenic
AGACACGTCCATAAACACCA+TGG 0.666006 1_2:-4425766 None:intergenic
TGAACTTGTGTAAGATGACG+AGG 0.669193 1_2:-4428565 None:intergenic
AGGTTTAGCAGAAGTCCAAG+TGG 0.670229 1_2:+4430146 Msa0050520:CDS
TAGCCGAAGTCCTGTCAGAG+TGG 0.673404 1_2:+4430553 Msa0050520:CDS
ACTTTCAGAAGATTCCATGT+CGG 0.675815 1_2:-4428517 None:intergenic
TATTCACACGAGGAGGTGAG+CGG 0.678307 1_2:-4431289 None:intergenic
TAATTGTGGTGAACACAATG+AGG 0.680177 1_2:+4428151 Msa0050520:CDS
TGGGCTCCTAAAACGCCTAG+GGG 0.681447 1_2:-4430933 None:intergenic
TAACTCTTTCTCCAAAACTG+AGG 0.688409 1_2:-4429773 None:intergenic
GTCCTCGTGCTCTATCGCGG+AGG 0.692339 1_2:+4430177 Msa0050520:CDS
TAGTTCCTCAGATTCCGACA+TGG 0.693411 1_2:+4428503 Msa0050520:CDS
AATTGTGGTGAACACAATGA+GGG 0.693875 1_2:+4428152 Msa0050520:CDS
TAAACTTCCAGACACACGAA+CGG 0.695383 1_2:-4431915 None:intergenic
GTAGGGCAAGGACACCTCGT+GGG 0.696905 1_2:+4430624 Msa0050520:CDS
GCACGCCTATTCACACGAGG+AGG 0.702677 1_2:-4431296 None:intergenic
GTACCTCACAGGAGACCGAG+AGG 0.704520 1_2:-4430750 None:intergenic
TGCCATTTCAACTTACTACG+AGG 0.709927 1_2:-4431635 None:intergenic
CTACAAGACACTGATAACTG+GGG 0.710341 1_2:-4431772 None:intergenic
GATCAAAACGTAAATCAAGG+AGG 0.710356 1_2:+4428697 Msa0050520:CDS
AAGCAAATAGTCATGAAGTG+CGG 0.712374 1_2:+4428409 Msa0050520:CDS
GTTCATCTAGTGATGACAGG+CGG 0.717464 1_2:+4428583 Msa0050520:CDS
CCTCACAGGAGACCGAGAGG+GGG 0.726559 1_2:-4430747 None:intergenic
TTCGACAGACTCCTCCCACG+AGG 0.730211 1_2:-4430638 None:intergenic
GCCCACCTTACCGAGCACGA+AGG 0.735674 1_2:+4431237 Msa0050520:CDS
ACACGTCCATAAACACCATG+GGG 0.743718 1_2:-4425764 None:intergenic
CACGGAGAAGAACTCCACCA+AGG 0.743784 1_2:+4430960 Msa0050520:CDS
GACGCACGCCTATTCACACG+AGG 0.756690 1_2:-4431299 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGTTTAAGATTTA+TGG + chr1_2:4428735-4428754 Msa0050520:intron 10.0%
!! AGATAAAAAAAAAAAATTGA+AGG - chr1_2:4429244-4429263 None:intergenic 10.0%
!! TTAAATTCTAATTAATACTA+AGG + chr1_2:4430825-4430844 Msa0050520:intron 10.0%
!!! AATTTTTTTTTTAAACTTCT+AGG + chr1_2:4431011-4431030 Msa0050520:intron 10.0%
!! TTCAATTGTTAAAACAATAA+GGG - chr1_2:4425101-4425120 None:intergenic 15.0%
!! ATTCAATTGTTAAAACAATA+AGG - chr1_2:4425102-4425121 None:intergenic 15.0%
!! AACAATTGAATATAAAATTG+TGG + chr1_2:4425111-4425130 Msa0050520:intron 15.0%
!! TTAAAATTAATAGTAAGTCA+CGG - chr1_2:4426876-4426895 None:intergenic 15.0%
!! AGTCAAATTATTATAAAAAG+AGG - chr1_2:4427738-4427757 None:intergenic 15.0%
!!! ATTAATTATTTTGACAGTTA+CGG - chr1_2:4428135-4428154 None:intergenic 15.0%
!! GGTATAAAAAATGTTTATGT+TGG - chr1_2:4424120-4424139 None:intergenic 20.0%
!! TATAAAAACGAAAACGAAAT+TGG - chr1_2:4424320-4424339 None:intergenic 20.0%
!! AAACATTAAACTAACAGAAA+GGG - chr1_2:4424513-4424532 None:intergenic 20.0%
!! AAAACATTAAACTAACAGAA+AGG - chr1_2:4424514-4424533 None:intergenic 20.0%
!!! TTTTTCAATTGATAACTGTT+AGG + chr1_2:4424531-4424550 Msa0050520:intron 20.0%
!!! ATGAATAAGGTATTCTTTAT+AGG + chr1_2:4424601-4424620 Msa0050520:intron 20.0%
!!! TAAAACAGTTTAAGACATAA+CGG - chr1_2:4425007-4425026 None:intergenic 20.0%
!!! GTTTTCTAATTTTAGATTGT+TGG + chr1_2:4425688-4425707 Msa0050520:intron 20.0%
!!! TTTTAGATTGTTGGTTAATT+TGG + chr1_2:4425697-4425716 Msa0050520:intron 20.0%
!!! AAATCAGTTATTTGTTGATT+AGG - chr1_2:4426123-4426142 None:intergenic 20.0%
!! TGACACATTTCAAAAAAAAA+GGG - chr1_2:4426151-4426170 None:intergenic 20.0%
!! ATGACACATTTCAAAAAAAA+AGG - chr1_2:4426152-4426171 None:intergenic 20.0%
!!! CTTCCATCTATATTATTTTT+TGG + chr1_2:4426290-4426309 Msa0050520:intron 20.0%
!! CTACCAAAAAATAATATAGA+TGG - chr1_2:4426296-4426315 None:intergenic 20.0%
!!! ACTGTCTTTTTTTTTTTTTG+TGG + chr1_2:4426332-4426351 Msa0050520:intron 20.0%
!!! TTTTTTTTTGTGGTTGAAAA+TGG + chr1_2:4426342-4426361 Msa0050520:intron 20.0%
!!! TTTCTTGTGATATAGTTTTA+AGG + chr1_2:4426440-4426459 Msa0050520:intron 20.0%
!! GAAAAATAATTCACAATATG+AGG - chr1_2:4426631-4426650 None:intergenic 20.0%
!!! TTTGAAATCATGTAATGTTT+TGG + chr1_2:4426967-4426986 Msa0050520:intron 20.0%
!!! AAACTCTTTTTACATTACAT+TGG - chr1_2:4427024-4427043 None:intergenic 20.0%
!! ACTGTCAAAATAATTAATTG+TGG + chr1_2:4428137-4428156 Msa0050520:CDS 20.0%
!!! ACATTTCATCAAACTTTTAA+AGG + chr1_2:4428259-4428278 Msa0050520:intron 20.0%
!!! TTCGTATTTTTTGTTTTAGA+TGG + chr1_2:4428342-4428361 Msa0050520:intron 20.0%
!! TATATAACTGACATACTAAT+AGG - chr1_2:4428848-4428867 None:intergenic 20.0%
!! TATTAGTATGTCAGTTATAT+AGG + chr1_2:4428847-4428866 Msa0050520:intron 20.0%
!!! ACTTTGATTAACAATTTTGA+TGG + chr1_2:4429001-4429020 Msa0050520:intron 20.0%
!! AGGATTGACAAATAATTTAT+TGG - chr1_2:4429224-4429243 None:intergenic 20.0%
!! AAGAAAAAAAAAAAATCAGC+AGG - chr1_2:4429426-4429445 None:intergenic 20.0%
!! AGTATGTTAAAACTTAACTT+CGG - chr1_2:4429640-4429659 None:intergenic 20.0%
!! CTATAAAATATCATAGAATG+AGG - chr1_2:4429668-4429687 None:intergenic 20.0%
!! TAATTAATACTAAGGTAGTA+TGG + chr1_2:4430833-4430852 Msa0050520:intron 20.0%
!!! ATTTTTACGAAAGTACGAAA+CGG + chr1_2:4424415-4424434 Msa0050520:intron 25.0%
!!! GCTATTTTTATAAGCTATGT+CGG + chr1_2:4424854-4424873 Msa0050520:intron 25.0%
!!! TAAGTTTTGTGAGAATGTTT+TGG - chr1_2:4424945-4424964 None:intergenic 25.0%
!! AAAACAGTTTAAGACATAAC+GGG - chr1_2:4425006-4425025 None:intergenic 25.0%
!!! ATGTCTTAAACTGTTTTAAC+AGG + chr1_2:4425009-4425028 Msa0050520:intron 25.0%
!!! TAAGTTTTGTGAGACTATTT+GGG - chr1_2:4425040-4425059 None:intergenic 25.0%
!!! TTAAGTTTTGTGAGACTATT+TGG - chr1_2:4425041-4425060 None:intergenic 25.0%
! TGTAAATCAAGATTTCATTG+CGG - chr1_2:4425202-4425221 None:intergenic 25.0%
! ATTTGATTCAGCGTTTATTT+AGG + chr1_2:4425436-4425455 Msa0050520:intron 25.0%
!! AATTTCCTGTTATCTTGTTT+CGG + chr1_2:4425473-4425492 Msa0050520:intron 25.0%
! TTCACAAGTTATAACTACAA+TGG - chr1_2:4425505-4425524 None:intergenic 25.0%
! TTGACTAGTAAGAAAAACTA+TGG + chr1_2:4425728-4425747 Msa0050520:exon 25.0%
! TCAAAAACCATTCTTTCATA+AGG - chr1_2:4425804-4425823 None:intergenic 25.0%
!! TTATGAAAGAATGGTTTTTG+AGG + chr1_2:4425803-4425822 Msa0050520:CDS 25.0%
!!! AATACCATTAGGTTGAATAT+TGG - chr1_2:4425867-4425886 None:intergenic 25.0%
! ATGCAAATCAAATGTATTAC+CGG - chr1_2:4425957-4425976 None:intergenic 25.0%
! ACATTTCAAAAAAAAAGGGA+AGG - chr1_2:4426147-4426166 None:intergenic 25.0%
! GTAAAAACATACCTTAACAA+TGG - chr1_2:4426265-4426284 None:intergenic 25.0%
! AATAATGCACACAAATAATC+TGG - chr1_2:4426517-4426536 None:intergenic 25.0%
! AATTTGAGTGTGTGTATTAA+TGG + chr1_2:4426539-4426558 Msa0050520:intron 25.0%
!!! ATTATTTTTCCACCTTTTGA+AGG + chr1_2:4426641-4426660 Msa0050520:intron 25.0%
! ATCAAATTGAAACCTTCAAA+AGG - chr1_2:4426656-4426675 None:intergenic 25.0%
!! ATATGCATAGTCAATTTTGA+AGG + chr1_2:4426679-4426698 Msa0050520:intron 25.0%
!!! AGCGATTTGATTTTCTAATT+TGG + chr1_2:4426827-4426846 Msa0050520:intron 25.0%
!!! GCGATTTGATTTTCTAATTT+GGG + chr1_2:4426828-4426847 Msa0050520:intron 25.0%
!!! TTCTAATTTGGGTTAGTTTT+TGG + chr1_2:4426839-4426858 Msa0050520:intron 25.0%
!! GAACTCTTTTTACATTACAT+TGG - chr1_2:4427055-4427074 None:intergenic 25.0%
!! AAATCCATGTAAGATGTTTT+TGG + chr1_2:4427639-4427658 Msa0050520:intron 25.0%
!!! TTTTGAAACATACACTCAAA+TGG + chr1_2:4427812-4427831 Msa0050520:intron 25.0%
! TTGAAGAAAATTGAAGATGT+AGG + chr1_2:4428089-4428108 Msa0050520:CDS 25.0%
! TTTATCATCACTCATATGAA+GGG - chr1_2:4428217-4428236 None:intergenic 25.0%
! ATTTATCATCACTCATATGA+AGG - chr1_2:4428218-4428237 None:intergenic 25.0%
!!! TTATTTATTTTCCCTCTTCA+AGG + chr1_2:4428299-4428318 Msa0050520:intron 25.0%
! ATACGAAGATTCAAATAAAC+AGG - chr1_2:4428329-4428348 None:intergenic 25.0%
! TACATATCAACAAAAAGTGA+AGG - chr1_2:4429190-4429209 None:intergenic 25.0%
!!! TTATATTTTAGGAATTGGCT+TGG - chr1_2:4429278-4429297 None:intergenic 25.0%
!!! CTAGCTTATATTTTAGGAAT+TGG - chr1_2:4429283-4429302 None:intergenic 25.0%
!!! CAACATCTAGCTTATATTTT+AGG - chr1_2:4429289-4429308 None:intergenic 25.0%
! AAATATAAGCTAGATGTTGT+TGG + chr1_2:4429290-4429309 Msa0050520:intron 25.0%
! AATATAAGCTAGATGTTGTT+GGG + chr1_2:4429291-4429310 Msa0050520:intron 25.0%
! ATTTACATGTAAAACGACAA+TGG - chr1_2:4429360-4429379 None:intergenic 25.0%
! TTTACATGTAAATGTAATCG+TGG + chr1_2:4429367-4429386 Msa0050520:intron 25.0%
!! TCTTGATTATACTTTGTTTG+TGG + chr1_2:4429471-4429490 Msa0050520:intron 25.0%
! CAATAGAAAGCAAGAAAAAA+GGG - chr1_2:4429500-4429519 None:intergenic 25.0%
! ACAAGTAAAATTTCATTTGC+TGG + chr1_2:4429588-4429607 Msa0050520:intron 25.0%
! TTTGAATAAAATACCAGATC+TGG - chr1_2:4430020-4430039 None:intergenic 25.0%
! ATCAAGTTTGAAAATAACCT+TGG - chr1_2:4430980-4430999 None:intergenic 25.0%
! ATGCTATCATTATTATTCAG+TGG - chr1_2:4431116-4431135 None:intergenic 25.0%
!!! TTATCTTTGCTTACTTTTCT+TGG - chr1_2:4431380-4431399 None:intergenic 25.0%
! AATTATCATGCTAACCATAA+AGG - chr1_2:4431836-4431855 None:intergenic 25.0%
!! CAATTTTCACACATCTATAT+GGG - chr1_2:4431869-4431888 None:intergenic 25.0%
!! ACAATTTTCACACATCTATA+TGG - chr1_2:4431870-4431889 None:intergenic 25.0%
!!! TTATTTTTGATGCTTTCAGA+TGG + chr1_2:4431957-4431976 Msa0050520:three_prime_UTR 25.0%
CACTCAATTGAAGATTATTG+TGG + chr1_2:4424392-4424411 Msa0050520:intron 30.0%
GATAACTGTTAGGTTATGTT+TGG + chr1_2:4424541-4424560 Msa0050520:intron 30.0%
!! GCTATTTTCATCAACTATCT+TGG + chr1_2:4424666-4424685 Msa0050520:intron 30.0%
AATAAGGTGAAAACAGCTTA+TGG + chr1_2:4424701-4424720 Msa0050520:intron 30.0%
GATAAGTTGTTTATCCAAAC+AGG - chr1_2:4424735-4424754 None:intergenic 30.0%
GTTTGGATAAACAACTTATC+TGG + chr1_2:4424735-4424754 Msa0050520:intron 30.0%
CTTATGCTTATCATGATAAG+TGG + chr1_2:4424760-4424779 Msa0050520:intron 30.0%
TCAAATAAGCCAATTCAAAC+AGG + chr1_2:4424980-4424999 Msa0050520:intron 30.0%
GTAAATCAAGATTTCATTGC+GGG - chr1_2:4425201-4425220 None:intergenic 30.0%
ATGAATCAGTTAGACATTTC+TGG - chr1_2:4425250-4425269 None:intergenic 30.0%
! AGAAATGTCTAACTGATTCA+TGG + chr1_2:4425249-4425268 Msa0050520:intron 30.0%
! TTCAGCGTTTATTTAGGATA+AGG + chr1_2:4425442-4425461 Msa0050520:intron 30.0%
! GTAGTTATAACTTGTGAAGT+CGG + chr1_2:4425507-4425526 Msa0050520:intron 30.0%
CTTTCCAATATTCAACCTAA+TGG + chr1_2:4425860-4425879 Msa0050520:intron 30.0%
! GTTATTTGTTGATTAGGAAG+AGG - chr1_2:4426117-4426136 None:intergenic 30.0%
! AAAGACAGTAGTCTTACTAT+AGG - chr1_2:4426321-4426340 None:intergenic 30.0%
CAATGGAAACTGACAAAAAT+AGG - chr1_2:4426381-4426400 None:intergenic 30.0%
GTTTCCATTGTTTATTCTGT+AGG + chr1_2:4426391-4426410 Msa0050520:intron 30.0%
GTATCCTACAGAATAAACAA+TGG - chr1_2:4426398-4426417 None:intergenic 30.0%
TTGTTTATTCTGTAGGATAC+AGG + chr1_2:4426398-4426417 Msa0050520:intron 30.0%
TGTTTATTCTGTAGGATACA+GGG + chr1_2:4426399-4426418 Msa0050520:intron 30.0%
AAATTGAAACCTTCAAAAGG+TGG - chr1_2:4426653-4426672 None:intergenic 30.0%
! TGGTGATTTCTTTTACTAGT+CGG + chr1_2:4426740-4426759 Msa0050520:intron 30.0%
! ATTTCTTTTACTAGTCGGTT+AGG + chr1_2:4426745-4426764 Msa0050520:intron 30.0%
AATTAAAACCATGCCAACAT+TGG + chr1_2:4426895-4426914 Msa0050520:intron 30.0%
! TTTTTCCTACGTGTTTTGTA+GGG + chr1_2:4427208-4427227 Msa0050520:intron 30.0%
! TGCCATTTAGTTTAGTACTT+TGG + chr1_2:4427519-4427538 Msa0050520:intron 30.0%
! GCCATTTAGTTTAGTACTTT+GGG + chr1_2:4427520-4427539 Msa0050520:intron 30.0%
! TCCCAAAGTACTAAACTAAA+TGG - chr1_2:4427524-4427543 None:intergenic 30.0%
TATGCCAAAAACATCTTACA+TGG - chr1_2:4427646-4427665 None:intergenic 30.0%
ACATACACTCAAATGGAAAT+TGG + chr1_2:4427819-4427838 Msa0050520:intron 30.0%
AAAGAATAGTGAACAGAGTA+AGG - chr1_2:4427927-4427946 None:intergenic 30.0%
TCTGTTCACTATTCTTTCAT+TGG + chr1_2:4427930-4427949 Msa0050520:intron 30.0%
CTGTTCACTATTCTTTCATT+GGG + chr1_2:4427931-4427950 Msa0050520:intron 30.0%
AAGACTCACAAGTCAAAAAT+TGG + chr1_2:4428369-4428388 Msa0050520:CDS 30.0%
AAGTCAAAAATTGGAAGGAA+TGG + chr1_2:4428378-4428397 Msa0050520:CDS 30.0%
! GGAAAGCATAAAAAATCTTC+AGG + chr1_2:4428438-4428457 Msa0050520:CDS 30.0%
AGGAAAGATAAACATAGACA+TGG + chr1_2:4428624-4428643 Msa0050520:CDS 30.0%
AGAGATCAAAACGTAAATCA+AGG + chr1_2:4428694-4428713 Msa0050520:CDS 30.0%
TATATCATGTGCTCTCATAT+AGG + chr1_2:4428808-4428827 Msa0050520:intron 30.0%
TAGTATGTCAGTTATATAGG+TGG + chr1_2:4428850-4428869 Msa0050520:intron 30.0%
!! TTTTGTCTTGTTGAGAACAA+TGG - chr1_2:4428950-4428969 None:intergenic 30.0%
AAAGATCATTCTCAGATAGA+TGG + chr1_2:4429152-4429171 Msa0050520:CDS 30.0%
ATATAAGCTAGATGTTGTTG+GGG + chr1_2:4429292-4429311 Msa0050520:intron 30.0%
ACGACAAATCATTATTTACC+TGG - chr1_2:4429331-4429350 None:intergenic 30.0%
TATAATCAAGAGAAGATGCA+AGG - chr1_2:4429462-4429481 None:intergenic 30.0%
CCAATAGAAAGCAAGAAAAA+AGG - chr1_2:4429501-4429520 None:intergenic 30.0%
!!! CCTTTTTTCTTGCTTTCTAT+TGG + chr1_2:4429498-4429517 Msa0050520:intron 30.0%
! ATCTTGTTTGCCTTAGAATT+GGG + chr1_2:4429542-4429561 Msa0050520:intron 30.0%
! GATTCATTTTCCCAATTCTA+AGG - chr1_2:4429555-4429574 None:intergenic 30.0%
ATGTTAAAACTTAACTTCGG+TGG - chr1_2:4429637-4429656 None:intergenic 30.0%
TCCACTGAATCATAAAAAGA+GGG + chr1_2:4429798-4429817 Msa0050520:CDS 30.0%
GAAGAATTCCCAAAAGAAAA+TGG + chr1_2:4429844-4429863 Msa0050520:CDS 30.0%
ATGATAATCCAGGAAAATCT+AGG + chr1_2:4429941-4429960 Msa0050520:CDS 30.0%
GTAAGCATAAGAAATAACAG+AGG - chr1_2:4429989-4430008 None:intergenic 30.0%
!! TTTATTCAAAGTTGATGAGC+AGG + chr1_2:4430030-4430049 Msa0050520:intron 30.0%
AAAGATACTCTTATGCTAGA+AGG + chr1_2:4430717-4430736 Msa0050520:CDS 30.0%
ACATACTCTCATATTCTCAA+CGG - chr1_2:4430862-4430881 None:intergenic 30.0%
AAGTTTGAAAATAACCTTGG+TGG - chr1_2:4430977-4430996 None:intergenic 30.0%
AGGTGAAGATATTGTACTTA+TGG + chr1_2:4431031-4431050 Msa0050520:intron 30.0%
! CATGATTTTATTCATCGTTG+AGG + chr1_2:4431054-4431073 Msa0050520:intron 30.0%
TCATTATTATTCAGTGGCAT+GGG - chr1_2:4431110-4431129 None:intergenic 30.0%
ATCATTATTATTCAGTGGCA+TGG - chr1_2:4431111-4431130 None:intergenic 30.0%
TTATGTGTAAGCCTATATGT+AGG + chr1_2:4431174-4431193 Msa0050520:intron 30.0%
GAAAAGTAAGCAAAGATAAC+AGG + chr1_2:4431381-4431400 Msa0050520:CDS 30.0%
ATTCTTCATAAACCAATGCT+AGG + chr1_2:4431601-4431620 Msa0050520:three_prime_UTR 30.0%
GATAAATCAATTCCTAGCAT+TGG - chr1_2:4431616-4431635 None:intergenic 30.0%
ATGGCATGTTGAAAGATAAT+AGG + chr1_2:4431652-4431671 Msa0050520:three_prime_UTR 30.0%
!! AGTAAGTATCGATATTTGCT+CGG + chr1_2:4431721-4431740 Msa0050520:three_prime_UTR 30.0%
! AAAAGCATGAGTTTAACTGA+TGG + chr1_2:4431797-4431816 Msa0050520:three_prime_UTR 30.0%
GAATTGAGAATCTACGCTTT+GGG - chr1_2:4424141-4424160 None:intergenic 35.0%
AGAATTGAGAATCTACGCTT+TGG - chr1_2:4424142-4424161 None:intergenic 35.0%
! TTCTCTTCTCTTCTCTTTTG+TGG + chr1_2:4424164-4424183 Msa0050520:five_prime_UTR 35.0%
CAAAACCTAATGGTGAATTG+AGG - chr1_2:4424218-4424237 None:intergenic 35.0%
! AACAGCTTATTTGCTGCTTA+TGG + chr1_2:4424567-4424586 Msa0050520:intron 35.0%
! TTGGAGCACTTACGAAAATA+AGG + chr1_2:4424685-4424704 Msa0050520:intron 35.0%
TTATGGACAATGAACCTGTT+TGG + chr1_2:4424718-4424737 Msa0050520:intron 35.0%
GCTTATTTGAGCTTATCTAC+AGG - chr1_2:4424970-4424989 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr1_2:4425075-4425094 Msa0050520:intron 35.0%
TAAAACAATAAGGGCCTGTT+TGG - chr1_2:4425092-4425111 None:intergenic 35.0%
AATAAAGTACAGCTGCATGT+AGG - chr1_2:4425362-4425381 None:intergenic 35.0%
GTATAGTAGCAGATTGATTG+AGG + chr1_2:4425392-4425411 Msa0050520:intron 35.0%
AGGTGTCAAACACTGAAATT+TGG + chr1_2:4425412-4425431 Msa0050520:intron 35.0%
AAGTCGGCATGAATTTAAGT+AGG + chr1_2:4425523-4425542 Msa0050520:intron 35.0%
GAGGAAAAACGAATACCATT+AGG - chr1_2:4425878-4425897 None:intergenic 35.0%
! CGAAAATTTTCAGCAGTCTT+TGG - chr1_2:4425923-4425942 None:intergenic 35.0%
ACATCATCACCATTGCTTAT+TGG + chr1_2:4426030-4426049 Msa0050520:intron 35.0%
!! GTTGATGATCCAATAAGCAA+TGG - chr1_2:4426042-4426061 None:intergenic 35.0%
GATCATCAACTGAAAGTTCT+TGG + chr1_2:4426052-4426071 Msa0050520:intron 35.0%
! TGCAGTGATTTTCCAGTATT+AGG - chr1_2:4426204-4426223 None:intergenic 35.0%
TTCTTCCATCAGATCGTAAA+AGG + chr1_2:4426237-4426256 Msa0050520:CDS 35.0%
CAAATAATCTGGTCATCAAG+AGG - chr1_2:4426506-4426525 None:intergenic 35.0%
GAGTGTGTGTATTAATGGTT+TGG + chr1_2:4426544-4426563 Msa0050520:intron 35.0%
GGAGACTTTATCAATCGAAA+TGG + chr1_2:4426584-4426603 Msa0050520:CDS 35.0%
GGAAACATGAAAATGGAACA+AGG - chr1_2:4426712-4426731 None:intergenic 35.0%
TGTGACAGGAAACATGAAAA+TGG - chr1_2:4426719-4426738 None:intergenic 35.0%
TTTCATGTTTCCTGTCACAA+TGG + chr1_2:4426720-4426739 Msa0050520:intron 35.0%
AAAGAAATCACCATTGTGAC+AGG - chr1_2:4426733-4426752 None:intergenic 35.0%
CTAAGAAAGTTCCATTTGCT+TGG + chr1_2:4426771-4426790 Msa0050520:intron 35.0%
!! AGATTGGTCTGTCATTTAGT+GGG + chr1_2:4426797-4426816 Msa0050520:intron 35.0%
ATGCAGATAAAAGCCAATGT+TGG - chr1_2:4426911-4426930 None:intergenic 35.0%
AACACGTAGGAAAAAGATAC+AGG - chr1_2:4427203-4427222 None:intergenic 35.0%
! CTTTTTCCTACGTGTTTTGT+AGG + chr1_2:4427207-4427226 Msa0050520:intron 35.0%
!! TTGAACTTTTTCTCCAGCTT+GGG + chr1_2:4427287-4427306 Msa0050520:intron 35.0%
GATAAACAGACCTATCAAGA+TGG - chr1_2:4427485-4427504 None:intergenic 35.0%
GTACTAAACTAAATGGCACT+AGG - chr1_2:4427517-4427536 None:intergenic 35.0%
! ATCAGTTTTCCTCATCCAAA+CGG - chr1_2:4427547-4427566 None:intergenic 35.0%
GTAAAAGCTAGAAACAGCTT+AGG + chr1_2:4427707-4427726 Msa0050520:intron 35.0%
TTAAGTTCTCTGTTTGTCTG+AGG + chr1_2:4427778-4427797 Msa0050520:intron 35.0%
TAAGTTCTCTGTTTGTCTGA+GGG + chr1_2:4427779-4427798 Msa0050520:intron 35.0%
CAAGTAAAGCCTGTTAAACA+AGG - chr1_2:4427875-4427894 None:intergenic 35.0%
TCACTATTCTTTCATTGGGT+TGG + chr1_2:4427935-4427954 Msa0050520:intron 35.0%
TTGCTCATGTGTTCAGTTAT+GGG + chr1_2:4428011-4428030 Msa0050520:intron 35.0%
!!! TTATTTTGACAGTTACGGCT+GGG - chr1_2:4428130-4428149 None:intergenic 35.0%
!!! ATTATTTTGACAGTTACGGC+TGG - chr1_2:4428131-4428150 None:intergenic 35.0%
TAATTGTGGTGAACACAATG+AGG + chr1_2:4428151-4428170 Msa0050520:CDS 35.0%
AATTGTGGTGAACACAATGA+GGG + chr1_2:4428152-4428171 Msa0050520:CDS 35.0%
AGAATTCCTTAGCCCATTTA+AGG + chr1_2:4428177-4428196 Msa0050520:intron 35.0%
GAACTCGGTATTCCTTAAAT+GGG - chr1_2:4428192-4428211 None:intergenic 35.0%
AGAACTCGGTATTCCTTAAA+TGG - chr1_2:4428193-4428212 None:intergenic 35.0%
AAACAGGTATTCCTTGAAGA+GGG - chr1_2:4428313-4428332 None:intergenic 35.0%
TAAACAGGTATTCCTTGAAG+AGG - chr1_2:4428314-4428333 None:intergenic 35.0%
CTCACAAGTCAAAAATTGGA+AGG + chr1_2:4428373-4428392 Msa0050520:CDS 35.0%
AAGCAAATAGTCATGAAGTG+CGG + chr1_2:4428409-4428428 Msa0050520:CDS 35.0%
AAAAATCTTCAGGAGACAGA+AGG + chr1_2:4428448-4428467 Msa0050520:CDS 35.0%
ACTTTCAGAAGATTCCATGT+CGG - chr1_2:4428520-4428539 None:intergenic 35.0%
GATCAAAACGTAAATCAAGG+AGG + chr1_2:4428697-4428716 Msa0050520:CDS 35.0%
!! GACATTGAGATTTTGTTGTG+TGG + chr1_2:4429026-4429045 Msa0050520:intron 35.0%
!!! ATTTTAGGAATTGGCTTGGT+TGG - chr1_2:4429274-4429293 None:intergenic 35.0%
! TAGATGTTGTTGGGGTTTTT+GGG + chr1_2:4429300-4429319 Msa0050520:intron 35.0%
ATGTAAAACGACAATGGTCT+AGG - chr1_2:4429354-4429373 None:intergenic 35.0%
!! CAATTCTAAGGCAAACAAGA+TGG - chr1_2:4429543-4429562 None:intergenic 35.0%
! CATCTTGTTTGCCTTAGAAT+TGG + chr1_2:4429541-4429560 Msa0050520:intron 35.0%
GCTCACATGACAAACAAAAA+AGG - chr1_2:4429615-4429634 None:intergenic 35.0%
ATTGTTCAGCCTTTGTTCTT+CGG + chr1_2:4429696-4429715 Msa0050520:intron 35.0%
TAACTCTTTCTCCAAAACTG+AGG - chr1_2:4429776-4429795 None:intergenic 35.0%
! CTCTTTTTATGATTCAGTGG+AGG - chr1_2:4429799-4429818 None:intergenic 35.0%
CTCCACTGAATCATAAAAAG+AGG + chr1_2:4429797-4429816 Msa0050520:CDS 35.0%
! TCCCTCTTTTTATGATTCAG+TGG - chr1_2:4429802-4429821 None:intergenic 35.0%
ACTGAATCATAAAAAGAGGG+AGG + chr1_2:4429801-4429820 Msa0050520:CDS 35.0%
CTGAATCATAAAAAGAGGGA+GGG + chr1_2:4429802-4429821 Msa0050520:CDS 35.0%
TGAATCATAAAAAGAGGGAG+GGG + chr1_2:4429803-4429822 Msa0050520:CDS 35.0%
! AAAGTAGACCTAGATTTTCC+TGG - chr1_2:4429952-4429971 None:intergenic 35.0%
AATACCAGATCTGGAAGAAA+TGG - chr1_2:4430011-4430030 None:intergenic 35.0%
AATACTCATACTCTTGCTCA+CGG - chr1_2:4430081-4430100 None:intergenic 35.0%
! GAATGTGTGTTGTTCTCATA+GGG - chr1_2:4430304-4430323 None:intergenic 35.0%
! TGAATGTGTGTTGTTCTCAT+AGG - chr1_2:4430305-4430324 None:intergenic 35.0%
TAATGCTTCTCAAAGGAACT+CGG - chr1_2:4430535-4430554 None:intergenic 35.0%
TTCACCAAAACGTATCAGAA+GGG + chr1_2:4430679-4430698 Msa0050520:CDS 35.0%
GCTACTTAATTTACCTGTCA+CGG - chr1_2:4430796-4430815 None:intergenic 35.0%
TCAGATATTCAGGATACAGA+AGG + chr1_2:4430906-4430925 Msa0050520:intron 35.0%
!! ATTCATCGTTGAGGCATTTT+TGG + chr1_2:4431063-4431082 Msa0050520:intron 35.0%
CATTATTATTCAGTGGCATG+GGG - chr1_2:4431109-4431128 None:intergenic 35.0%
TAAGCAAAGATAACAGGTCA+AGG + chr1_2:4431387-4431406 Msa0050520:CDS 35.0%
!! TAAAGGTGAAGTACCGAATT+CGG + chr1_2:4431479-4431498 Msa0050520:exon 35.0%
! ATCCTCGTAGTAAGTTGAAA+TGG + chr1_2:4431633-4431652 Msa0050520:three_prime_UTR 35.0%
ACTACAAGACACTGATAACT+GGG - chr1_2:4431776-4431795 None:intergenic 35.0%
TACTACAAGACACTGATAAC+TGG - chr1_2:4431777-4431796 None:intergenic 35.0%
GAGTTTAACTGATGGAGATT+TGG + chr1_2:4431805-4431824 Msa0050520:three_prime_UTR 35.0%
TCATGCTAACCATAAAGGAT+AGG - chr1_2:4431831-4431850 None:intergenic 35.0%
TGTGTCTGGAAGTTTATGTA+TGG + chr1_2:4431922-4431941 Msa0050520:three_prime_UTR 35.0%
TCTGGAAGTTTATGTATGGA+TGG + chr1_2:4431926-4431945 Msa0050520:three_prime_UTR 35.0%
CTGGAAGTTTATGTATGGAT+GGG + chr1_2:4431927-4431946 Msa0050520:three_prime_UTR 35.0%
! TCTCTTCTCTTTTGTGGTTC+AGG + chr1_2:4424170-4424189 Msa0050520:five_prime_UTR 40.0%
TCCTTCCTCAATTCACCATT+AGG + chr1_2:4424210-4424229 Msa0050520:intron 40.0%
ACCTAATGGTGAATTGAGGA+AGG - chr1_2:4424214-4424233 None:intergenic 40.0%
CGGAAAACGACAAAACCTAA+TGG - chr1_2:4424228-4424247 None:intergenic 40.0%
AAAACCTAAAACCCTAGCTG+AGG - chr1_2:4424271-4424290 None:intergenic 40.0%
GGCATAAGCGCTTATGAATA+AGG + chr1_2:4424588-4424607 Msa0050520:intron 40.0%
ACTGAGAGAGAGAATTCATG+TGG + chr1_2:4425142-4425161 Msa0050520:intron 40.0%
CTGAGAGAGAGAATTCATGT+GGG + chr1_2:4425143-4425162 Msa0050520:intron 40.0%
TGAGAGAGAGAATTCATGTG+GGG + chr1_2:4425144-4425163 Msa0050520:intron 40.0%
! TAACTGATTCATGGCCAGTT+AGG + chr1_2:4425258-4425277 Msa0050520:intron 40.0%
CCTTACCGAAACAAGATAAC+AGG - chr1_2:4425481-4425500 None:intergenic 40.0%
! CCTGTTATCTTGTTTCGGTA+AGG + chr1_2:4425478-4425497 Msa0050520:intron 40.0%
!! TATTAGCTTGATAGTGCAGC+TGG + chr1_2:4425565-4425584 Msa0050520:intron 40.0%
! AGCTGGATTGTTCAGTTTTG+TGG + chr1_2:4425582-4425601 Msa0050520:intron 40.0%
GAAAAACCCCATGGTGTTTA+TGG + chr1_2:4425758-4425777 Msa0050520:CDS 40.0%
TTTATGGACGTGTCTGTAGA+CGG + chr1_2:4425774-4425793 Msa0050520:CDS 40.0%
AACATCGTAGAAAAGCTGAG+AGG - chr1_2:4425897-4425916 None:intergenic 40.0%
! AATTTTCGTGCACTGTGTAC+CGG + chr1_2:4425935-4425954 Msa0050520:CDS 40.0%
GATGATGTGTGGAAGGAAAA+AGG - chr1_2:4426018-4426037 None:intergenic 40.0%
! TAAGCAATGGTGATGATGTG+TGG - chr1_2:4426029-4426048 None:intergenic 40.0%
!! AATGTGTCATTTCCCCTTTC+AGG + chr1_2:4426162-4426181 Msa0050520:intron 40.0%
TTTCCCCTTTCAGGAGAAAA+AGG + chr1_2:4426171-4426190 Msa0050520:intron 40.0%
! ACTCCTTTTTCTCCTGAAAG+GGG - chr1_2:4426177-4426196 None:intergenic 40.0%
! GACTCCTTTTTCTCCTGAAA+GGG - chr1_2:4426178-4426197 None:intergenic 40.0%
! TGACTCCTTTTTCTCCTGAA+AGG - chr1_2:4426179-4426198 None:intergenic 40.0%
AAAGGAGTCAGTCCTAATAC+TGG + chr1_2:4426189-4426208 Msa0050520:CDS 40.0%
TGGAAAATCACTGCACTACA+AGG + chr1_2:4426209-4426228 Msa0050520:CDS 40.0%
GGAAAATCACTGCACTACAA+GGG + chr1_2:4426210-4426229 Msa0050520:CDS 40.0%
CGTAAAAGGCTCCATTGTTA+AGG + chr1_2:4426251-4426270 Msa0050520:CDS 40.0%
TCCATTTGCTTGGTACAGAT+TGG + chr1_2:4426781-4426800 Msa0050520:intron 40.0%
ACCAATCTGTACCAAGCAAA+TGG - chr1_2:4426785-4426804 None:intergenic 40.0%
!! CAGATTGGTCTGTCATTTAG+TGG + chr1_2:4426796-4426815 Msa0050520:intron 40.0%
!! GATTGGTCTGTCATTTAGTG+GGG + chr1_2:4426798-4426817 Msa0050520:intron 40.0%
GATAAAAGCCAATGTTGGCA+TGG - chr1_2:4426906-4426925 None:intergenic 40.0%
ACAAGCTAAAGAAGAAGAGC+AGG - chr1_2:4426947-4426966 None:intergenic 40.0%
TTTCATGAAACCTCATCGAC+AGG + chr1_2:4427119-4427138 Msa0050520:intron 40.0%
ATACAACACATGCTGCATTC+GGG - chr1_2:4427168-4427187 None:intergenic 40.0%
CATACAACACATGCTGCATT+CGG - chr1_2:4427169-4427188 None:intergenic 40.0%
GCAACTTAGCATTCTAACCT+GGG - chr1_2:4427263-4427282 None:intergenic 40.0%
AGCAACTTAGCATTCTAACC+TGG - chr1_2:4427264-4427283 None:intergenic 40.0%
!! CTTGAACTTTTTCTCCAGCT+TGG + chr1_2:4427286-4427305 Msa0050520:intron 40.0%
TAACTCAAAAGAACCCAAGC+TGG - chr1_2:4427303-4427322 None:intergenic 40.0%
! CCTCTGAAAAAATAGGTCAG+AGG - chr1_2:4427359-4427378 None:intergenic 40.0%
!!! CCTCTGACCTATTTTTTCAG+AGG + chr1_2:4427356-4427375 Msa0050520:intron 40.0%
! GGAGACTCCTCTGAAAAAAT+AGG - chr1_2:4427366-4427385 None:intergenic 40.0%
!!! TTTTTTCAGAGGAGTCTCCT+AGG + chr1_2:4427367-4427386 Msa0050520:intron 40.0%
AAGCTGATCACCATCTTGAT+AGG + chr1_2:4427472-4427491 Msa0050520:CDS 40.0%
!! TTTAGTACTTTGGGACCGTT+TGG + chr1_2:4427529-4427548 Msa0050520:intron 40.0%
AAAGCTAGAAACAGCTTAGG+AGG + chr1_2:4427710-4427729 Msa0050520:intron 40.0%
!! TGCAATGTGCCTTGTTTAAC+AGG + chr1_2:4427863-4427882 Msa0050520:intron 40.0%
CTTGCTCATGTGTTCAGTTA+TGG + chr1_2:4428010-4428029 Msa0050520:intron 40.0%
TGCTCATGTGTTCAGTTATG+GGG + chr1_2:4428012-4428031 Msa0050520:intron 40.0%
!! TTTTTGGCAAGCTGTTGCAA+GGG + chr1_2:4428057-4428076 Msa0050520:CDS 40.0%
GAAGATGTAGGCAATGAAGA+AGG + chr1_2:4428101-4428120 Msa0050520:CDS 40.0%
!! GGTATTCCTTAAATGGGCTA+AGG - chr1_2:4428186-4428205 None:intergenic 40.0%
CTCATATGAAGGGAAGAACT+CGG - chr1_2:4428207-4428226 None:intergenic 40.0%
TGAACTTGTGTAAGATGACG+AGG - chr1_2:4428568-4428587 None:intergenic 40.0%
CAAGTTCATCTAGTGATGAC+AGG + chr1_2:4428580-4428599 Msa0050520:CDS 40.0%
GGAGGAAAAGAAAGAGATCT+AGG + chr1_2:4428604-4428623 Msa0050520:CDS 40.0%
GAGATAAACGTCGAGAAAAG+AGG + chr1_2:4428655-4428674 Msa0050520:CDS 40.0%
ATGTGCTCTCATATAGGTTG+TGG + chr1_2:4428814-4428833 Msa0050520:intron 40.0%
TGCAGTTAAACTCGTATGGT+AGG - chr1_2:4428926-4428945 None:intergenic 40.0%
TGGATGCAGTTAAACTCGTA+TGG - chr1_2:4428930-4428949 None:intergenic 40.0%
!! AGATTTTGTTGTGTGGTGTC+AGG + chr1_2:4429033-4429052 Msa0050520:intron 40.0%
!! GATTTTGTTGTGTGGTGTCA+GGG + chr1_2:4429034-4429053 Msa0050520:intron 40.0%
! CTAGATGTTGTTGGGGTTTT+TGG + chr1_2:4429299-4429318 Msa0050520:intron 40.0%
! AGATGTTGTTGGGGTTTTTG+GGG + chr1_2:4429301-4429320 Msa0050520:intron 40.0%
ATGTAAATGTAATCGTGGCC+TGG + chr1_2:4429372-4429391 Msa0050520:intron 40.0%
TAATCGTGGCCTGGAAAATA+AGG + chr1_2:4429381-4429400 Msa0050520:intron 40.0%
!!! CCTAGATTGCCTTATTTTCC+AGG - chr1_2:4429393-4429412 None:intergenic 40.0%
CCTGGAAAATAAGGCAATCT+AGG + chr1_2:4429390-4429409 Msa0050520:intron 40.0%
! CTTTCTATTGGCTGTTAGCT+AGG + chr1_2:4429510-4429529 Msa0050520:intron 40.0%
GAATCATAAAAAGAGGGAGG+GGG + chr1_2:4429804-4429823 Msa0050520:CDS 40.0%
ACTTCTGTCAGGTCTATAGT+TGG - chr1_2:4429896-4429915 None:intergenic 40.0%
! TAACAGAGGTGTGACAAGAT+TGG - chr1_2:4429975-4429994 None:intergenic 40.0%
CTTACCATTTCTTCCAGATC+TGG + chr1_2:4430004-4430023 Msa0050520:intron 40.0%
GTCCTGTTAGAAGAATAAGC+AGG + chr1_2:4430213-4430232 Msa0050520:CDS 40.0%
CTCCTGCTTATTCTTCTAAC+AGG - chr1_2:4430218-4430237 None:intergenic 40.0%
TTGCTAAGACTTCTACGATC+GGG - chr1_2:4430359-4430378 None:intergenic 40.0%
CTTGCTAAGACTTCTACGAT+CGG - chr1_2:4430360-4430379 None:intergenic 40.0%
TTTGAGAAACAGATCTGGCA+GGG - chr1_2:4430385-4430404 None:intergenic 40.0%
ATACTCTAGCAGAACTCCTA+CGG - chr1_2:4430409-4430428 None:intergenic 40.0%
CTCTTTCTTGACACTCTTAC+AGG - chr1_2:4430458-4430477 None:intergenic 40.0%
! TGTCAAGAAAGAGCATAAGC+AGG + chr1_2:4430465-4430484 Msa0050520:CDS 40.0%
!! ATACGTTTTGGTGAAGCATC+GGG - chr1_2:4430674-4430693 None:intergenic 40.0%
!! GATACGTTTTGGTGAAGCAT+CGG - chr1_2:4430675-4430694 None:intergenic 40.0%
CTTCACCAAAACGTATCAGA+AGG + chr1_2:4430678-4430697 Msa0050520:CDS 40.0%
TCACCAAAACGTATCAGAAG+GGG + chr1_2:4430680-4430699 Msa0050520:CDS 40.0%
GGTCATTCCTTCCATTATAG+CGG - chr1_2:4430775-4430794 None:intergenic 40.0%
CAGGTAAATTAAGTAGCACG+TGG + chr1_2:4430799-4430818 Msa0050520:intron 40.0%
CTTTCTGCTCTCAGATATTC+AGG + chr1_2:4430896-4430915 Msa0050520:intron 40.0%
TGGGGATTTGAATACTAGGT+AGG - chr1_2:4431091-4431110 None:intergenic 40.0%
CAGTATGCAGTCTAAACAAC+AGG - chr1_2:4431143-4431162 None:intergenic 40.0%
GTAAGCCTATATGTAGGTAC+CGG + chr1_2:4431180-4431199 Msa0050520:intron 40.0%
AACCATTTCCATAAGAGACC+AGG - chr1_2:4431445-4431464 None:intergenic 40.0%
GTTCTCCTGATTCAAGCTAA+AGG + chr1_2:4431462-4431481 Msa0050520:CDS 40.0%
!! CTTCACCTTTAGCTTGAATC+AGG - chr1_2:4431470-4431489 None:intergenic 40.0%
AAACCTCACCTTAAATGAGC+TGG + chr1_2:4431513-4431532 Msa0050520:three_prime_UTR 40.0%
CAAAGCTTCCAGCTCATTTA+AGG - chr1_2:4431524-4431543 None:intergenic 40.0%
AGTAACTAATTCCAGCAAGC+AGG - chr1_2:4431574-4431593 None:intergenic 40.0%
! TGCCATTTCAACTTACTACG+AGG - chr1_2:4431638-4431657 None:intergenic 40.0%
TGATAACTGGGGATATGGAT+GGG - chr1_2:4431764-4431783 None:intergenic 40.0%
CTACAAGACACTGATAACTG+GGG - chr1_2:4431775-4431794 None:intergenic 40.0%
GAGATTTGGCCTATCCTTTA+TGG + chr1_2:4431819-4431838 Msa0050520:three_prime_UTR 40.0%
CACACATCTATATGGGTCAT+AGG - chr1_2:4431862-4431881 None:intergenic 40.0%
!! GTATTTTAGAAGCGTGAGGT+TGG - chr1_2:4431896-4431915 None:intergenic 40.0%
!! AACGGTATTTTAGAAGCGTG+AGG - chr1_2:4431900-4431919 None:intergenic 40.0%
TAAAATACCGTTCGTGTGTC+TGG + chr1_2:4431908-4431927 Msa0050520:three_prime_UTR 40.0%
TAAACTTCCAGACACACGAA+CGG - chr1_2:4431918-4431937 None:intergenic 40.0%
!!! AGGTTTTGTCGTTTTCCGCA+CGG + chr1_2:4424230-4424249 Msa0050520:intron 45.0%
TTGCGTTTCATCCTCAGCTA+GGG + chr1_2:4424257-4424276 Msa0050520:intron 45.0%
! TCATCCTCAGCTAGGGTTTT+AGG + chr1_2:4424264-4424283 Msa0050520:intron 45.0%
TTCACTCGATTTCGCTGATC+TGG + chr1_2:4424359-4424378 Msa0050520:intron 45.0%
!! CATAACGGGCCTGTTTGAAT+TGG - chr1_2:4424992-4425011 None:intergenic 45.0%
CAATAAGGGCCTGTTTGGAT+TGG - chr1_2:4425087-4425106 None:intergenic 45.0%
TTCATGGCCAGTTAGGTACA+AGG + chr1_2:4425265-4425284 Msa0050520:intron 45.0%
! CTAACAGCCTTGTACCTAAC+TGG - chr1_2:4425275-4425294 None:intergenic 45.0%
GTTAGGTACAAGGCTGTTAG+AGG + chr1_2:4425275-4425294 Msa0050520:intron 45.0%
GGCAAAGAAGAAAAACCCCA+TGG + chr1_2:4425749-4425768 Msa0050520:CDS 45.0%
ACACGTCCATAAACACCATG+GGG - chr1_2:4425767-4425786 None:intergenic 45.0%
GACACGTCCATAAACACCAT+GGG - chr1_2:4425768-4425787 None:intergenic 45.0%
AGACACGTCCATAAACACCA+TGG - chr1_2:4425769-4425788 None:intergenic 45.0%
TTATGGACGTGTCTGTAGAC+GGG + chr1_2:4425775-4425794 Msa0050520:CDS 45.0%
CGGGGATCCTTATGAAAGAA+TGG + chr1_2:4425794-4425813 Msa0050520:CDS 45.0%
! CAATGGTGATGATGTGTGGA+AGG - chr1_2:4426025-4426044 None:intergenic 45.0%
! TGGAGCCTTTTACGATCTGA+TGG - chr1_2:4426245-4426264 None:intergenic 45.0%
GGTTGAAAATGGCTTAGCAG+TGG + chr1_2:4426353-4426372 Msa0050520:intron 45.0%
!!! TGGTTTGGTTTGCCTTTTGC+AGG + chr1_2:4426559-4426578 Msa0050520:intron 45.0%
!!! GGTTTGGTTTGCCTTTTGCA+GGG + chr1_2:4426560-4426579 Msa0050520:intron 45.0%
TAAAGTCTCCACCCTGCAAA+AGG - chr1_2:4426574-4426593 None:intergenic 45.0%
ATATGTGATGCCTGTCGATG+AGG - chr1_2:4427132-4427151 None:intergenic 45.0%
CATTCTAACCTGGGAACTTG+GGG - chr1_2:4427254-4427273 None:intergenic 45.0%
GCATTCTAACCTGGGAACTT+GGG - chr1_2:4427255-4427274 None:intergenic 45.0%
AGCATTCTAACCTGGGAACT+TGG - chr1_2:4427256-4427275 None:intergenic 45.0%
GGAGAATCATGCTTTAGCCT+AGG - chr1_2:4427387-4427406 None:intergenic 45.0%
AGGCTAAAGCATGATTCTCC+AGG + chr1_2:4427387-4427406 Msa0050520:CDS 45.0%
TTCTCCAGGCCTTCTATCTA+TGG + chr1_2:4427401-4427420 Msa0050520:CDS 45.0%
CAGCAATCGCCATAGATAGA+AGG - chr1_2:4427413-4427432 None:intergenic 45.0%
ATTGCTGATCGTGACACTCT+TGG + chr1_2:4427426-4427445 Msa0050520:CDS 45.0%
AAGGCACATTGCATCAAGTG+TGG - chr1_2:4427856-4427875 None:intergenic 45.0%
GTGAACAGAGTAAGGTCATC+TGG - chr1_2:4427919-4427938 None:intergenic 45.0%
!! CAGTTATGGGGTCATTTTGC+AGG + chr1_2:4428024-4428043 Msa0050520:intron 45.0%
!! GTCATTTTGCAGGAAGCATG+TGG + chr1_2:4428034-4428053 Msa0050520:intron 45.0%
!! TGCAGGAAGCATGTGGTTTT+TGG + chr1_2:4428041-4428060 Msa0050520:intron 45.0%
!!! GTTTTTGGCAAGCTGTTGCA+AGG + chr1_2:4428056-4428075 Msa0050520:CDS 45.0%
TAGTCATGAAGTGCGGAGAA+AGG + chr1_2:4428416-4428435 Msa0050520:CDS 45.0%
AGTCATGAAGTGCGGAGAAA+GGG + chr1_2:4428417-4428436 Msa0050520:CDS 45.0%
TAGTTCCTCAGATTCCGACA+TGG + chr1_2:4428503-4428522 Msa0050520:CDS 45.0%
AGATTCCATGTCGGAATCTG+AGG - chr1_2:4428511-4428530 None:intergenic 45.0%
GTTCATCTAGTGATGACAGG+CGG + chr1_2:4428583-4428602 Msa0050520:CDS 45.0%
!! GATGTTGTTGGGGTTTTTGG+GGG + chr1_2:4429302-4429321 Msa0050520:intron 45.0%
!! ATGTTGTTGGGGTTTTTGGG+GGG + chr1_2:4429303-4429322 Msa0050520:intron 45.0%
CACATGCTACCGAAGAACAA+AGG - chr1_2:4429708-4429727 None:intergenic 45.0%
! AGTCCAGTCATCCTCAGTTT+TGG + chr1_2:4429762-4429781 Msa0050520:CDS 45.0%
TCTCCAAAACTGAGGATGAC+TGG - chr1_2:4429768-4429787 None:intergenic 45.0%
! GCTGCGCTCCATTTTCTTTT+GGG - chr1_2:4429855-4429874 None:intergenic 45.0%
GACCTGACAGAAGTGAAGAA+AGG + chr1_2:4429902-4429921 Msa0050520:CDS 45.0%
TGCCTTTCTTCACTTCTGTC+AGG - chr1_2:4429907-4429926 None:intergenic 45.0%
!! GACGTGATGGATGATAATCC+AGG + chr1_2:4429931-4429950 Msa0050520:CDS 45.0%
TCCTCTTTGGACTAATGCTC+GGG - chr1_2:4430127-4430146 None:intergenic 45.0%
CTCCTCTTTGGACTAATGCT+CGG - chr1_2:4430128-4430147 None:intergenic 45.0%
CTTCTGCTAAACCTCCTCTT+TGG - chr1_2:4430140-4430159 None:intergenic 45.0%
AGGTTTAGCAGAAGTCCAAG+TGG + chr1_2:4430146-4430165 Msa0050520:CDS 45.0%
! CGAGGACTTTTACTACCACT+TGG - chr1_2:4430164-4430183 None:intergenic 45.0%
! CTTTGAGAAACAGATCTGGC+AGG - chr1_2:4430386-4430405 None:intergenic 45.0%
!! ACGGCTTTGAGAAACAGATC+TGG - chr1_2:4430390-4430409 None:intergenic 45.0%
! GATCTGTTTCTCAAAGCCGT+AGG + chr1_2:4430390-4430409 Msa0050520:CDS 45.0%
CATCACGAAGAACAGTCAGT+AGG + chr1_2:4430429-4430448 Msa0050520:CDS 45.0%
CTTCTGGCAGATGATCTAAC+TGG - chr1_2:4430494-4430513 None:intergenic 45.0%
CTTCGGCTAATGCTTCTCAA+AGG - chr1_2:4430542-4430561 None:intergenic 45.0%
! CTTCCCCTTCTGATACGTTT+TGG - chr1_2:4430686-4430705 None:intergenic 45.0%
AAACGTATCAGAAGGGGAAG+AGG + chr1_2:4430686-4430705 Msa0050520:CDS 45.0%
!! TGAGGTACCGCTATAATGGA+AGG + chr1_2:4430765-4430784 Msa0050520:CDS 45.0%
GGCATGGGGATTTGAATACT+AGG - chr1_2:4431095-4431114 None:intergenic 45.0%
CTACTCCGGTACCTACATAT+AGG - chr1_2:4431188-4431207 None:intergenic 45.0%
!! CTATATGTAGGTACCGGAGT+AGG + chr1_2:4431186-4431205 Msa0050520:intron 45.0%
TAGTGATTCCACAGAAGACC+TGG - chr1_2:4431354-4431373 None:intergenic 45.0%
! TCTCCTTCTAGAAGCTCAGA+CGG + chr1_2:4431410-4431429 Msa0050520:CDS 45.0%
TTTCCGTCTGAGCTTCTAGA+AGG - chr1_2:4431416-4431435 None:intergenic 45.0%
AGAAGCTCAGACGGAAAGAA+AGG + chr1_2:4431419-4431438 Msa0050520:CDS 45.0%
AAGAAAGGCCTGGTCTCTTA+TGG + chr1_2:4431434-4431453 Msa0050520:CDS 45.0%
TACCGAATTCGGACCTTTCA+GGG + chr1_2:4431490-4431509 Msa0050520:three_prime_UTR 45.0%
TTCCCTGAAAGGTCCGAATT+CGG - chr1_2:4431495-4431514 None:intergenic 45.0%
TAAGGTGAGGTTTCCCTGAA+AGG - chr1_2:4431506-4431525 None:intergenic 45.0%
! CTTCCAGCTCATTTAAGGTG+AGG - chr1_2:4431519-4431538 None:intergenic 45.0%
ATACTGCTTTACCTGCTTGC+TGG + chr1_2:4431560-4431579 Msa0050520:three_prime_UTR 45.0%
GATAACTGGGGATATGGATG+GGG - chr1_2:4431763-4431782 None:intergenic 45.0%
CTGATAACTGGGGATATGGA+TGG - chr1_2:4431765-4431784 None:intergenic 45.0%
GACACTGATAACTGGGGATA+TGG - chr1_2:4431769-4431788 None:intergenic 45.0%
!! ATGAAACGCAAGGTACCGTG+CGG - chr1_2:4424248-4424267 None:intergenic 50.0%
CTAGCTGAGGATGAAACGCA+AGG - chr1_2:4424258-4424277 None:intergenic 50.0%
CTTGCGTTTCATCCTCAGCT+AGG + chr1_2:4424256-4424275 Msa0050520:intron 50.0%
TATGGACGTGTCTGTAGACG+GGG + chr1_2:4425776-4425795 Msa0050520:CDS 50.0%
TCTGTAGGATACAGGGCTGA+TGG + chr1_2:4426406-4426425 Msa0050520:intron 50.0%
!!! TTGGTTTGCCTTTTGCAGGG+TGG + chr1_2:4426563-4426582 Msa0050520:intron 50.0%
CCAGTCCCTACAAAACACGT+AGG - chr1_2:4427216-4427235 None:intergenic 50.0%
! CCTACGTGTTTTGTAGGGAC+TGG + chr1_2:4427213-4427232 Msa0050520:intron 50.0%
! ACGTGTTTTGTAGGGACTGG+TGG + chr1_2:4427216-4427235 Msa0050520:intron 50.0%
AGCATATACCCCAAGTTCCC+AGG + chr1_2:4427243-4427262 Msa0050520:CDS 50.0%
ATCGCCATAGATAGAAGGCC+TGG - chr1_2:4427408-4427427 None:intergenic 50.0%
!! ACTTTGGGACCGTTTGGATG+AGG + chr1_2:4427535-4427554 Msa0050520:intron 50.0%
AACGTCGAGAAAAGAGGCGA+AGG + chr1_2:4428661-4428680 Msa0050520:CDS 50.0%
! TTGTGTGGTGTCAGGGAATC+AGG + chr1_2:4429041-4429060 Msa0050520:intron 50.0%
TCATAAAAAGAGGGAGGGGG+TGG + chr1_2:4429807-4429826 Msa0050520:CDS 50.0%
CATAAAAAGAGGGAGGGGGT+GGG + chr1_2:4429808-4429827 Msa0050520:CDS 50.0%
! GGCTGCGCTCCATTTTCTTT+TGG - chr1_2:4429856-4429875 None:intergenic 50.0%
AGAAAGGCAGCATGACGTGA+TGG + chr1_2:4429918-4429937 Msa0050520:CDS 50.0%
! CTCTTGCTCACGGTTTGCTT+AGG - chr1_2:4430071-4430090 None:intergenic 50.0%
! GGGCTTTTGCACACACACTT+GGG - chr1_2:4430107-4430126 None:intergenic 50.0%
CGAGCATTAGTCCAAAGAGG+AGG + chr1_2:4430126-4430145 Msa0050520:CDS 50.0%
AAAGTCCTCGTGCTCTATCG+CGG + chr1_2:4430174-4430193 Msa0050520:CDS 50.0%
TACGATCGGGACTTCTCACA+GGG - chr1_2:4430346-4430365 None:intergenic 50.0%
AGAAGTCTCAGCAGGAGTTC+CGG + chr1_2:4430509-4430528 Msa0050520:CDS 50.0%
TTGCCACTCTGACAGGACTT+CGG - chr1_2:4430559-4430578 None:intergenic 50.0%
TACGACTCCTGGAATAGCTG+CGG - chr1_2:4430595-4430614 None:intergenic 50.0%
! GAAGGTATAGAACCCCCTCT+CGG + chr1_2:4430735-4430754 Msa0050520:CDS 50.0%
CCATTATAGCGGTACCTCAC+AGG - chr1_2:4430764-4430783 None:intergenic 50.0%
!! CCTGTGAGGTACCGCTATAA+TGG + chr1_2:4430761-4430780 Msa0050520:CDS 50.0%
ATGGAAGGAATGACCGTGAC+AGG + chr1_2:4430780-4430799 Msa0050520:CDS 50.0%
!! GATACAGAAGGTACTCCCCT+AGG + chr1_2:4430918-4430937 Msa0050520:CDS 50.0%
! GGTGGGCTTCGTGATATAGA+CGG - chr1_2:4431224-4431243 None:intergenic 50.0%
CTATACCTTCGTGCTCGGTA+AGG - chr1_2:4431245-4431264 None:intergenic 50.0%
TTGGGCTATACCTTCGTGCT+CGG - chr1_2:4431250-4431269 None:intergenic 50.0%
TATTCACACGAGGAGGTGAG+CGG - chr1_2:4431292-4431311 None:intergenic 50.0%
ACAGAAGACCTGGATCGAGA+TGG - chr1_2:4431344-4431363 None:intergenic 50.0%
ATCTCGATCCAGGTCTTCTG+TGG + chr1_2:4431343-4431362 Msa0050520:CDS 50.0%
GGCCTGGTCTCTTATGGAAA+TGG + chr1_2:4431440-4431459 Msa0050520:CDS 50.0%
GTACCGAATTCGGACCTTTC+AGG + chr1_2:4431489-4431508 Msa0050520:three_prime_UTR 50.0%
TCGATATTTGCTCGGACGTG+TGG + chr1_2:4431729-4431748 Msa0050520:three_prime_UTR 50.0%
CGATATTTGCTCGGACGTGT+GGG + chr1_2:4431730-4431749 Msa0050520:three_prime_UTR 50.0%
CATCTAGTGATGACAGGCGG+AGG + chr1_2:4428586-4428605 Msa0050520:CDS 55.0%
GAGGATGACTGGACTTCAGC+TGG - chr1_2:4429757-4429776 None:intergenic 55.0%
AATGGAGCGCAGCCTAGCAA+CGG + chr1_2:4429862-4429881 Msa0050520:CDS 55.0%
!! TTGGCCTTGATGCCGTTGCT+AGG - chr1_2:4429877-4429896 None:intergenic 55.0%
! CGGGCTTTTGCACACACACT+TGG - chr1_2:4430108-4430127 None:intergenic 55.0%
GCCCGAGCATTAGTCCAAAG+AGG + chr1_2:4430123-4430142 Msa0050520:CDS 55.0%
TATCGCGGAGGAGTTTGAGC+AGG + chr1_2:4430189-4430208 Msa0050520:CDS 55.0%
CTACGATCGGGACTTCTCAC+AGG - chr1_2:4430347-4430366 None:intergenic 55.0%
CATCTGCCAGAAGTCTCAGC+AGG + chr1_2:4430501-4430520 Msa0050520:CDS 55.0%
GGAACTCCTGCTGAGACTTC+TGG - chr1_2:4430510-4430529 None:intergenic 55.0%
GCTTCTCAAAGGAACTCGGC+CGG - chr1_2:4430531-4430550 None:intergenic 55.0%
TAGCCGAAGTCCTGTCAGAG+TGG + chr1_2:4430553-4430572 Msa0050520:CDS 55.0%
GCAATCACCGCAGCTATTCC+AGG + chr1_2:4430585-4430604 Msa0050520:CDS 55.0%
GAGTCGTAGCCCTGTTCGTA+GGG + chr1_2:4430607-4430626 Msa0050520:CDS 55.0%
GTGTCCTTGCCCTACGAACA+GGG - chr1_2:4430619-4430638 None:intergenic 55.0%
TACCTCACAGGAGACCGAGA+GGG - chr1_2:4430752-4430771 None:intergenic 55.0%
! GGTACTCCCCTAGGCGTTTT+AGG + chr1_2:4430927-4430946 Msa0050520:CDS 55.0%
TGGGCTCCTAAAACGCCTAG+GGG - chr1_2:4430936-4430955 None:intergenic 55.0%
GTGGGCTCCTAAAACGCCTA+GGG - chr1_2:4430937-4430956 None:intergenic 55.0%
CTTGGTGGAGTTCTTCTCCG+TGG - chr1_2:4430962-4430981 None:intergenic 55.0%
CACGGAGAAGAACTCCACCA+AGG + chr1_2:4430960-4430979 Msa0050520:CDS 55.0%
GTGTCCTGCTTCTCCTACTC+CGG - chr1_2:4431202-4431221 None:intergenic 55.0%
ACCTTCGTGCTCGGTAAGGT+GGG - chr1_2:4431241-4431260 None:intergenic 55.0%
TACCTTCGTGCTCGGTAAGG+TGG - chr1_2:4431242-4431261 None:intergenic 55.0%
! TGCGAATTGGGCTAGGGCTT+GGG - chr1_2:4431268-4431287 None:intergenic 55.0%
! TTGCGAATTGGGCTAGGGCT+TGG - chr1_2:4431269-4431288 None:intergenic 55.0%
AGCGGTTGCGAATTGGGCTA+GGG - chr1_2:4431274-4431293 None:intergenic 55.0%
GAGGTGAGCGGTTGCGAATT+GGG - chr1_2:4431280-4431299 None:intergenic 55.0%
GCTCACCTCCTCGTGTGAAT+AGG + chr1_2:4431291-4431310 Msa0050520:CDS 55.0%
! TCGAGATGGACTCCTGCTGA+GGG - chr1_2:4431330-4431349 None:intergenic 55.0%
! ATCGAGATGGACTCCTGCTG+AGG - chr1_2:4431331-4431350 None:intergenic 55.0%
CTCAGACGGAAAGAAAGGCC+TGG + chr1_2:4431424-4431443 Msa0050520:CDS 55.0%
!! TGGGGTTTTTGGGGGGTTCC+AGG + chr1_2:4429310-4429329 Msa0050520:intron 60.0%
GCAGCCTAGCAACGGCATCA+AGG + chr1_2:4429870-4429889 Msa0050520:CDS 60.0%
TCAGCAGAAGCCCCGTGAGA+GGG + chr1_2:4430252-4430271 Msa0050520:CDS 60.0%
TCTCCCCTTCCTCCCTCTCA+CGG - chr1_2:4430267-4430286 None:intergenic 60.0%
CCTCTGCTTGCCACTCTGAC+AGG - chr1_2:4430566-4430585 None:intergenic 60.0%
CCTGTCAGAGTGGCAAGCAG+AGG + chr1_2:4430563-4430582 Msa0050520:CDS 60.0%
ACGAACAGGGCTACGACTCC+TGG - chr1_2:4430606-4430625 None:intergenic 60.0%
GGAGTCGTAGCCCTGTTCGT+AGG + chr1_2:4430606-4430625 Msa0050520:CDS 60.0%
GTAGCCCTGTTCGTAGGGCA+AGG + chr1_2:4430612-4430631 Msa0050520:CDS 60.0%
GGTGTCCTTGCCCTACGAAC+AGG - chr1_2:4430620-4430639 None:intergenic 60.0%
GTAGGGCAAGGACACCTCGT+GGG + chr1_2:4430624-4430643 Msa0050520:CDS 60.0%
TTCGACAGACTCCTCCCACG+AGG - chr1_2:4430641-4430660 None:intergenic 60.0%
ACCTCACAGGAGACCGAGAG+GGG - chr1_2:4430751-4430770 None:intergenic 60.0%
GTACCTCACAGGAGACCGAG+AGG - chr1_2:4430753-4430772 None:intergenic 60.0%
! GGTGGGCTCCTAAAACGCCT+AGG - chr1_2:4430938-4430957 None:intergenic 60.0%
!!! GTTTTAGGAGCCCACCGCCA+CGG + chr1_2:4430942-4430961 Msa0050520:CDS 60.0%
GAGTTCTTCTCCGTGGCGGT+GGG - chr1_2:4430955-4430974 None:intergenic 60.0%
GGTGGAGTTCTTCTCCGTGG+CGG - chr1_2:4430959-4430978 None:intergenic 60.0%
! GGTACCGGAGTAGGAGAAGC+AGG + chr1_2:4431195-4431214 Msa0050520:intron 60.0%
GAGCGGTTGCGAATTGGGCT+AGG - chr1_2:4431275-4431294 None:intergenic 60.0%
GGAGGTGAGCGGTTGCGAAT+TGG - chr1_2:4431281-4431300 None:intergenic 60.0%
GCACGCCTATTCACACGAGG+AGG - chr1_2:4431299-4431318 None:intergenic 60.0%
GACGCACGCCTATTCACACG+AGG - chr1_2:4431302-4431321 None:intergenic 60.0%
GTGCGTCATCATCCCTCAGC+AGG + chr1_2:4431315-4431334 Msa0050520:CDS 60.0%
GCAGGAGTCCATCTCGATCC+AGG + chr1_2:4431333-4431352 Msa0050520:CDS 60.0%
GTCCTCGTGCTCTATCGCGG+AGG + chr1_2:4430177-4430196 Msa0050520:CDS 65.0%
CTCCTCCGCGATAGAGCACG+AGG - chr1_2:4430182-4430201 None:intergenic 65.0%
GTCAGCAGAAGCCCCGTGAG+AGG + chr1_2:4430251-4430270 Msa0050520:CDS 65.0%
AAGCCCCGTGAGAGGGAGGA+AGG + chr1_2:4430259-4430278 Msa0050520:CDS 65.0%
AGCCCCGTGAGAGGGAGGAA+GGG + chr1_2:4430260-4430279 Msa0050520:CDS 65.0%
TCCCCTTCCTCCCTCTCACG+GGG - chr1_2:4430265-4430284 None:intergenic 65.0%
CTCCCCTTCCTCCCTCTCAC+GGG - chr1_2:4430266-4430285 None:intergenic 65.0%
CGTAGGGCAAGGACACCTCG+TGG + chr1_2:4430623-4430642 Msa0050520:CDS 65.0%
CCTCACAGGAGACCGAGAGG+GGG - chr1_2:4430750-4430769 None:intergenic 65.0%
GGAGTTCTTCTCCGTGGCGG+TGG - chr1_2:4430956-4430975 None:intergenic 65.0%
GCCCACCTTACCGAGCACGA+AGG + chr1_2:4431237-4431256 Msa0050520:CDS 65.0%
GGAGGGGGTGGGCATGCTAG+AGG + chr1_2:4429819-4429838 Msa0050520:CDS 70.0%
GGGGGTGGGCATGCTAGAGG+AGG + chr1_2:4429822-4429841 Msa0050520:CDS 70.0%
GCAGAAGCCCCGTGAGAGGG+AGG + chr1_2:4430255-4430274 Msa0050520:CDS 70.0%
GCCCCGTGAGAGGGAGGAAG+GGG + chr1_2:4430261-4430280 Msa0050520:CDS 70.0%
GGGCAAGGACACCTCGTGGG+AGG + chr1_2:4430627-4430646 Msa0050520:CDS 70.0%
CCCCCTCTCGGTCTCCTGTG+AGG + chr1_2:4430747-4430766 Msa0050520:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4424108 4431996 4424108 ID=Msa0050520;Name=Msa0050520
chr1_2 mRNA 4424108 4431996 4424108 ID=Msa0050520-mRNA-1;Parent=Msa0050520;Name=Msa0050520-mRNA-1;_AED=0.10;_eAED=0.10;_QI=106|1|1|1|0.92|0.85|14|515|772
chr1_2 exon 4424108 4424191 4424108 ID=Msa0050520-mRNA-1:exon:1128;Parent=Msa0050520-mRNA-1
chr1_2 exon 4425725 4425824 4425725 ID=Msa0050520-mRNA-1:exon:1129;Parent=Msa0050520-mRNA-1
chr1_2 exon 4425902 4425956 4425902 ID=Msa0050520-mRNA-1:exon:1130;Parent=Msa0050520-mRNA-1
chr1_2 exon 4426184 4426272 4426184 ID=Msa0050520-mRNA-1:exon:1131;Parent=Msa0050520-mRNA-1
chr1_2 exon 4426581 4426605 4426581 ID=Msa0050520-mRNA-1:exon:1132;Parent=Msa0050520-mRNA-1
chr1_2 exon 4427229 4427264 4427229 ID=Msa0050520-mRNA-1:exon:1133;Parent=Msa0050520-mRNA-1
chr1_2 exon 4427376 4427493 4427376 ID=Msa0050520-mRNA-1:exon:1134;Parent=Msa0050520-mRNA-1
chr1_2 exon 4428046 4428173 4428046 ID=Msa0050520-mRNA-1:exon:1135;Parent=Msa0050520-mRNA-1
chr1_2 exon 4428361 4428718 4428361 ID=Msa0050520-mRNA-1:exon:1136;Parent=Msa0050520-mRNA-1
chr1_2 exon 4429055 4429173 4429055 ID=Msa0050520-mRNA-1:exon:1137;Parent=Msa0050520-mRNA-1
chr1_2 exon 4429758 4429962 4429758 ID=Msa0050520-mRNA-1:exon:1138;Parent=Msa0050520-mRNA-1
chr1_2 exon 4430052 4430801 4430052 ID=Msa0050520-mRNA-1:exon:1139;Parent=Msa0050520-mRNA-1
chr1_2 exon 4430910 4430981 4430910 ID=Msa0050520-mRNA-1:exon:1140;Parent=Msa0050520-mRNA-1
chr1_2 exon 4431196 4431996 4431196 ID=Msa0050520-mRNA-1:exon:1141;Parent=Msa0050520-mRNA-1
chr1_2 five_prime_UTR 4424108 4424191 4424108 ID=Msa0050520-mRNA-1:five_prime_utr;Parent=Msa0050520-mRNA-1
chr1_2 five_prime_UTR 4425725 4425746 4425725 ID=Msa0050520-mRNA-1:five_prime_utr;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4425747 4425824 4425747 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4425902 4425956 4425902 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4426184 4426272 4426184 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4426581 4426605 4426581 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4427229 4427264 4427229 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4427376 4427493 4427376 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4428046 4428173 4428046 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4428361 4428718 4428361 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4429055 4429173 4429055 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4429758 4429962 4429758 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4430052 4430801 4430052 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4430910 4430981 4430910 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 CDS 4431196 4431481 4431196 ID=Msa0050520-mRNA-1:cds;Parent=Msa0050520-mRNA-1
chr1_2 three_prime_UTR 4431482 4431996 4431482 ID=Msa0050520-mRNA-1:three_prime_utr;Parent=Msa0050520-mRNA-1
Gene Sequence

>Msa0050520

ATGGCAAAGAAGAAAAACCCCATGGTGTTTATGGACGTGTCTGTAGACGGGGATCCTTATGAAAGAATGGTTTTTGAGCTTTTCTACGATGTTGCTCCAAAGACTGCTGAAAATTTTCGTGCACTGTGTACCGGAGAAAAAGGAGTCAGTCCTAATACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCAGATCGTAAAAGGCTCCATTGTTAAGGGTGGAGACTTTATCAATCGAAATGGGACTGGTGGAGAGAGCATATACCCCAAGTTCCCAGAGGAGTCTCCTAGGCTAAAGCATGATTCTCCAGGCCTTCTATCTATGGCGATTGCTGATCGTGACACTCTTGGTTCACATTTTATCATCACTTTGAAAGCTGATCACCATCTTGATAGGAAGCATGTGGTTTTTGGCAAGCTGTTGCAAGGGTATGATATATTGAAGAAAATTGAAGATGTAGGCAATGAAGAAGGACTCCCAGCCGTAACTGTCAAAATAATTAATTGTGGTGAACACAATGAGGATGGAAAGAAGACTCACAAGTCAAAAATTGGAAGGAATGGATCTTCTGAAGCAAATAGTCATGAAGTGCGGAGAAAGGGAAAGCATAAAAAATCTTCAGGAGACAGAAGGAAGAAGAGAAAACATTACTCATCAGAATCAGATAGTTCCTCAGATTCCGACATGGAATCTTCTGAAAGTGATAGTGACTCTGACTCAGATTTGTCCTCGTCATCTTACACAAGTTCATCTAGTGATGACAGGCGGAGGAAAAGAAAGAGATCTAGGAAAGATAAACATAGACATGGAAAAAGAAGAGATAAACGTCGAGAAAAGAGGCGAAGGAAACAAGATAAGAGATCAAAACGTAAATCAAGGAGGGAATCAGGCAGTCATTCTGATGCAGATAGTGCAAGTAAGAGTAACGATAATTCTAACGGCAAAGGTCTTGATACTCAAGAGAAAATTCTGAAGCAAAAAGATCATTCTCAGATAGATGCTGAAGTCCAGTCATCCTCAGTTTTGGAGAAAGAGTTACCTCCACTGAATCATAAAAAGAGGGAGGGGGTGGGCATGCTAGAGGAGGAAGAATTCCCAAAAGAAAATGGAGCGCAGCCTAGCAACGGCATCAAGGCCAACTATAGACCTGACAGAAGTGAAGAAAGGCAGCATGACGTGATGGATGATAATCCAGGAAAATCTAGGAGTCGAAGCATGAGTCCTAAGCAAACCGTGAGCAAGAGTATGAGTATTAGTCCCAAGTGTGTGTGCAAAAGCCCGAGCATTAGTCCAAAGAGGAGGTTTAGCAGAAGTCCAAGTGGTAGTAAAAGTCCTCGTGCTCTATCGCGGAGGAGTTTGAGCAGGAGTCCTGTTAGAAGAATAAGCAGGAGTCTAAACAGAAACGTCAGCAGAAGCCCCGTGAGAGGGAGGAAGGGGAGAAGTATCAGTAGAAGCCCTATGAGAACAACACACATTCATAGAAGTGTCAGCAAGAGCCCTGTGAGAAGTCCCGATCGTAGAAGTCTTAGCAAGAGCCCTGCCAGATCTGTTTCTCAAAGCCGTAGGAGTTCTGCTAGAGTATCATCACGAAGAACAGTCAGTAGGAGTCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCATCTGCCAGAAGTCTCAGCAGGAGTTCCGGCCGAGTTCCTTTGAGAAGCATTAGCCGAAGTCCTGTCAGAGTGGCAAGCAGAGGCAATCACCGCAGCTATTCCAGGAGTCGTAGCCCTGTTCGTAGGGCAAGGACACCTCGTGGGAGGAGTCTGTCGAAGAGTGTGTCACCCGATGCTTCACCAAAACGTATCAGAAGGGGAAGAGGTTTCAGTGAAAGATACTCTTATGCTAGAAGGTATAGAACCCCCTCTCGGTCTCCTGTGAGGTACCGCTATAATGGAAGGAATGACCGTGACAGATATTCAGGATACAGAAGGTACTCCCCTAGGCGTTTTAGGAGCCCACCGCCACGGAGAAGAACTCCACCAAGGTACCGGAGTAGGAGAAGCAGGACACCGTCTATATCACGAAGCCCACCTTACCGAGCACGAAGGTATAGCCCAAGCCCTAGCCCAATTCGCAACCGCTCACCTCCTCGTGTGAATAGGCGTGCGTCATCATCCCTCAGCAGGAGTCCATCTCGATCCAGGTCTTCTGTGGAATCACTATCTCCAAGAAAAGTAAGCAAAGATAACAGGTCAAGGTCTCCTTCTAGAAGCTCAGACGGAAAGAAAGGCCTGGTCTCTTATGGAAATGGTTCTCCTGATTCAAGCTAA
Protein sequence

>Msa0050520

MAKKKNPMVFMDVSVDGDPYERMVFELFYDVAPKTAENFRALCTGEKGVSPNTGKSLHYKGSFFHQIVKGSIVKGGDFINRNGTGGESIYPKFPEESPRLKHDSPGLLSMAIADRDTLGSHFIITLKADHHLDRKHVVFGKLLQGYDILKKIEDVGNEEGLPAVTVKIINCGEHNEDGKKTHKSKIGRNGSSEANSHEVRRKGKHKKSSGDRRKKRKHYSSESDSSSDSDMESSESDSDSDSDLSSSSYTSSSSDDRRRKRKRSRKDKHRHGKRRDKRREKRRRKQDKRSKRKSRRESGSHSDADSASKSNDNSNGKGLDTQEKILKQKDHSQIDAEVQSSSVLEKELPPLNHKKREGVGMLEEEEFPKENGAQPSNGIKANYRPDRSEERQHDVMDDNPGKSRSRSMSPKQTVSKSMSISPKCVCKSPSISPKRRFSRSPSGSKSPRALSRRSLSRSPVRRISRSLNRNVSRSPVRGRKGRSISRSPMRTTHIHRSVSKSPVRSPDRRSLSKSPARSVSQSRRSSARVSSRRTVSRSPVRVSRKSISRSPVRSSARSLSRSSGRVPLRSISRSPVRVASRGNHRSYSRSRSPVRRARTPRGRSLSKSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRYRYNGRNDRDRYSGYRRYSPRRFRSPPPRRRTPPRYRSRRSRTPSISRSPPYRARRYSPSPSPIRNRSPPRVNRRASSSLSRSPSRSRSSVESLSPRKVSKDNRSRSPSRSSDGKKGLVSYGNGSPDSS*