AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0100880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100880 MtrunA17_Chr1g0149061 95.530 783 24 1 1 783 1 772 0.0 1440
Msa0100880 MtrunA17_Chr3g0138061 74.026 231 48 2 1 230 4 223 3.83e-117 375
Msa0100880 MtrunA17_Chr7g0260441 57.297 185 67 2 1 184 1 174 8.75e-63 223
Msa0100880 MtrunA17_Chr7g0260441 39.474 266 93 12 561 782 407 648 1.01e-18 90.9
Msa0100880 MtrunA17_Chr4g0038431 51.667 180 74 3 6 184 3 170 2.41e-49 171
Msa0100880 MtrunA17_Chr3g0113441 51.412 177 73 3 9 184 66 230 1.88e-46 165
Msa0100880 MtrunA17_Chr4g0045321 48.876 178 78 3 9 184 6 172 5.43e-46 168
Msa0100880 MtrunA17_Chr7g0274841 47.778 180 81 3 6 184 3 170 5.77e-46 162
Msa0100880 MtrunA17_Chr3g0104751 50.847 177 74 3 9 184 36 200 9.30e-45 159
Msa0100880 MtrunA17_Chr8g0374621 47.568 185 82 4 6 187 3 175 3.78e-43 160
Msa0100880 MtrunA17_Chr3g0145501 44.211 190 93 3 9 197 14 191 6.32e-43 154
Msa0100880 MtrunA17_Chr7g0270991 41.753 194 86 5 1 189 90 261 4.39e-36 137
Msa0100880 MtrunA17_Chr8g0353571 41.530 183 90 5 5 184 16 184 2.68e-34 129
Msa0100880 MtrunA17_Chr1g0193711 42.708 192 88 4 1 189 79 251 1.02e-32 127
Msa0100880 MtrunA17_Chr4g0037281 44.134 179 85 5 9 184 48 214 1.26e-32 126
Msa0100880 MtrunA17_Chr1g0213971 42.541 181 80 5 9 184 79 240 1.17e-30 120
Msa0100880 MtrunA17_Chr8g0351571 35.461 141 66 5 26 164 15 132 9.16e-16 75.5
Msa0100880 MtrunA17_Chr2g0321111 36.478 159 75 6 27 182 477 612 2.57e-15 80.1
Msa0100880 MtrunA17_Chr7g0266721 38.462 143 63 5 26 166 24 143 1.69e-14 72.0
Msa0100880 MtrunA17_Chr5g0401141 35.417 144 68 6 25 166 358 478 3.45e-13 73.2
Msa0100880 MtrunA17_Chr6g0484281 30.952 168 82 6 23 179 12 156 3.72e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100880 AT4G32420.1 67.204 186 49 2 1 185 1 175 2.06e-80 275
Msa0100880 AT4G32420.5 67.204 186 49 2 1 185 1 175 2.06e-80 275
Msa0100880 AT4G32420.3 67.204 186 49 2 1 185 1 175 2.06e-80 275
Msa0100880 AT4G32420.6 67.204 186 49 2 1 185 1 175 2.06e-80 275
Msa0100880 AT4G32420.4 67.251 171 44 2 1 170 1 160 3.10e-72 253
Msa0100880 AT3G63400.2 57.297 185 67 2 1 184 1 174 4.09e-64 219
Msa0100880 AT3G63400.3 57.297 185 67 2 1 184 1 174 4.69e-63 222
Msa0100880 AT3G63400.4 57.297 185 67 2 1 184 1 174 4.69e-63 222
Msa0100880 AT3G63400.1 57.297 185 67 2 1 184 1 174 4.69e-63 222
Msa0100880 AT3G56070.1 50.000 180 77 3 6 184 3 170 1.30e-47 167
Msa0100880 AT3G56070.2 50.000 180 77 3 6 184 3 170 1.30e-47 167
Msa0100880 AT4G38740.1 50.000 180 75 5 7 184 4 170 4.64e-47 165
Msa0100880 AT5G58710.1 49.718 177 76 3 9 184 37 201 1.07e-46 165
Msa0100880 AT2G29960.1 50.282 177 75 3 9 184 34 198 2.85e-46 164
Msa0100880 AT2G29960.3 50.282 177 75 3 9 184 34 198 2.85e-46 164
Msa0100880 AT2G21130.1 48.333 180 80 3 6 184 4 171 1.54e-45 161
Msa0100880 AT4G34870.1 47.778 180 81 3 6 184 3 170 1.64e-45 161
Msa0100880 AT3G55920.1 46.893 177 81 3 9 184 61 225 7.97e-45 161
Msa0100880 AT2G15790.1 49.438 178 77 3 9 184 6 172 1.07e-44 165
Msa0100880 AT2G16600.1 46.111 180 84 3 6 184 4 171 2.73e-42 152
Msa0100880 AT2G29960.2 47.458 177 70 4 9 184 34 188 1.15e-40 148
Msa0100880 AT2G38730.1 44.809 183 84 5 5 184 30 198 6.94e-36 135
Msa0100880 AT3G62030.2 45.223 157 66 3 9 164 150 287 8.58e-34 132
Msa0100880 AT4G34960.1 41.758 182 92 4 9 188 49 218 1.83e-33 129
Msa0100880 AT2G16600.2 41.111 180 71 3 6 184 4 149 3.90e-33 125
Msa0100880 AT5G13120.1 40.659 182 82 6 9 184 92 253 2.28e-31 124
Msa0100880 AT5G13120.2 40.659 182 82 6 9 184 88 249 3.74e-31 123
Msa0100880 AT3G62030.3 42.697 178 81 4 9 184 96 254 6.73e-31 122
Msa0100880 AT3G62030.1 42.697 178 81 4 9 184 97 255 7.03e-31 122
Msa0100880 AT3G22920.1 43.243 185 78 10 6 184 3 166 1.88e-30 120
Msa0100880 AT4G34960.2 44.186 129 59 3 9 136 49 165 7.44e-27 108
Msa0100880 AT4G32420.2 66.154 65 22 0 121 185 1 65 2.50e-22 103
Msa0100880 AT1G01940.1 36.879 141 64 5 26 164 15 132 4.16e-17 79.7
Msa0100880 AT3G44600.1 35.849 159 76 6 27 182 491 626 3.19e-15 80.1
Msa0100880 AT2G36130.1 37.063 143 65 5 26 166 24 143 3.22e-15 74.3
Msa0100880 AT5G67530.1 34.591 159 78 7 25 180 357 492 1.85e-13 74.3

Find 230 sgRNAs with CRISPR-Local

Find 562 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGCTTCCAGCTCATTTA+AGG 0.110768 1_3:-7328652 None:intergenic
GAGATTTGGCCTATCCTTTA+TGG 0.157069 1_3:+7328950 Msa0100880:three_prime_UTR
CTCTTTCTTGACACTCTTAC+AGG 0.211910 1_3:-7327586 None:intergenic
TTGCGAATTGGGCTAGGGCT+TGG 0.226989 1_3:-7328397 None:intergenic
CTTTCTGCTCTCAGATATTC+AGG 0.239140 1_3:+7328027 Msa0100880:intron
TTCTTCCATCAGATCGTAAA+AGG 0.249523 1_3:+7323408 Msa0100880:CDS
GTACCGAATTCGGACCTTTC+AGG 0.264264 1_3:+7328620 Msa0100880:three_prime_UTR
GGAACTCCTGCTGAGACTTC+TGG 0.281243 1_3:-7327638 None:intergenic
TACTACAAGACACTGATAAC+TGG 0.294409 1_3:-7328905 None:intergenic
GAAGAATTCCCAAAAGAAAA+TGG 0.301545 1_3:+7326975 Msa0100880:CDS
CTTCCCCTTCTGATACGTTT+TGG 0.307276 1_3:-7327814 None:intergenic
TTTCCCCTTTCAGGAGAAAA+AGG 0.308702 1_3:+7323342 Msa0100880:intron
TAAAATACCGTTCGTGTGTC+TGG 0.318072 1_3:+7329039 Msa0100880:three_prime_UTR
TGCGAATTGGGCTAGGGCTT+GGG 0.324125 1_3:-7328396 None:intergenic
GGAGGTGAGCGGTTGCGAAT+TGG 0.325475 1_3:-7328409 None:intergenic
GACACTGATAACTGGGGATA+TGG 0.325870 1_3:-7328897 None:intergenic
CTTCACCTTTAGCTTGAATC+AGG 0.326116 1_3:-7328598 None:intergenic
TTGTGTGGTGTCAGGGAATC+AGG 0.326784 1_3:+7326180 Msa0100880:intron
CTCCTGCTTATTCTTCTAAC+AGG 0.326957 1_3:-7327346 None:intergenic
TTCTCCAGGCCTTCTATCTA+TGG 0.340779 1_3:+7324540 Msa0100880:CDS
TTGTTTATTCTGTAGGATAC+AGG 0.345733 1_3:+7323568 Msa0100880:intron
GAGGTGAGCGGTTGCGAATT+GGG 0.350999 1_3:-7328408 None:intergenic
AGTCCAGTCATCCTCAGTTT+TGG 0.353871 1_3:+7326893 Msa0100880:CDS
ATACTGCTTTACCTGCTTGC+TGG 0.356419 1_3:+7328691 Msa0100880:three_prime_UTR
ATGGCATGTTGAAAGATAAT+AGG 0.357054 1_3:+7328783 Msa0100880:three_prime_UTR
AAGAAAGGCCTGGTCTCTTA+TGG 0.357463 1_3:+7328565 Msa0100880:CDS
AGCATTCTAACCTGGGAACT+TGG 0.364036 1_3:-7324392 None:intergenic
GAAAAGTAAGCAAAGATAAC+AGG 0.371011 1_3:+7328512 Msa0100880:CDS
AATTATCATGCTAACCATAA+AGG 0.371072 1_3:-7328964 None:intergenic
GAGTTTAACTGATGGAGATT+TGG 0.372096 1_3:+7328936 Msa0100880:three_prime_UTR
CTTCTGCTAAACCTCCTCTT+TGG 0.376794 1_3:-7327268 None:intergenic
TGAATGTGTGTTGTTCTCAT+AGG 0.378971 1_3:-7327433 None:intergenic
GGTGTCCTTGCCCTACGAAC+AGG 0.379140 1_3:-7327748 None:intergenic
CTCCCCTTCCTCCCTCTCAC+GGG 0.379675 1_3:-7327394 None:intergenic
TGCCTTTCTTCACTTCTGTC+AGG 0.388286 1_3:-7327035 None:intergenic
TAAAGGTGAAGTACCGAATT+CGG 0.397418 1_3:+7328610 Msa0100880:exon
TTTCCGTCTGAGCTTCTAGA+AGG 0.397442 1_3:-7328544 None:intergenic
CACACATCTATATGGGTCAT+AGG 0.398441 1_3:-7328990 None:intergenic
AAAGGAGTCAGTCCTAATAC+TGG 0.399979 1_3:+7323360 Msa0100880:CDS
GAGCGGTTGCGAATTGGGCT+AGG 0.400236 1_3:-7328403 None:intergenic
GGAGTTCTTCTCCGTGGCGG+TGG 0.402817 1_3:-7328084 None:intergenic
GCCCCGTGAGAGGGAGGAAG+GGG 0.406880 1_3:+7327392 Msa0100880:CDS
AAAGATCATTCTCAGATAGA+TGG 0.415084 1_3:+7326291 Msa0100880:CDS
ACGAACAGGGCTACGACTCC+TGG 0.416701 1_3:-7327734 None:intergenic
AGAATTGAGAATCTACGCTT+TGG 0.417082 1_3:-7321310 None:intergenic
AAGCCCCGTGAGAGGGAGGA+AGG 0.417883 1_3:+7327390 Msa0100880:CDS
CGTAAAAGGCTCCATTGTTA+AGG 0.420698 1_3:+7323422 Msa0100880:CDS
AAAGATACTCTTATGCTAGA+AGG 0.424339 1_3:+7327848 Msa0100880:CDS
GAGATAAACGTCGAGAAAAG+AGG 0.427527 1_3:+7325794 Msa0100880:CDS
TTCCCTGAAAGGTCCGAATT+CGG 0.432085 1_3:-7328623 None:intergenic
ATTGCTGATCGTGACACTCT+TGG 0.435667 1_3:+7324565 Msa0100880:CDS
ATCCTCGTAGTAAGTTGAAA+TGG 0.436312 1_3:+7328764 Msa0100880:three_prime_UTR
GCAATCACCGCAGCTATTCC+AGG 0.436681 1_3:+7327716 Msa0100880:CDS
TCCTCTTTGGACTAATGCTC+GGG 0.437106 1_3:-7327255 None:intergenic
GCTCACCTCCTCGTGTGAAT+AGG 0.442557 1_3:+7328422 Msa0100880:CDS
GAATTGAGAATCTACGCTTT+GGG 0.448105 1_3:-7321309 None:intergenic
AGCCCCGTGAGAGGGAGGAA+GGG 0.450891 1_3:+7327391 Msa0100880:CDS
CTCTTGCTCACGGTTTGCTT+AGG 0.451493 1_3:-7327199 None:intergenic
GGCCTGGTCTCTTATGGAAA+TGG 0.453229 1_3:+7328571 Msa0100880:CDS
CAGCAATCGCCATAGATAGA+AGG 0.454132 1_3:-7324549 None:intergenic
CGGGGATCCTTATGAAAGAA+TGG 0.458164 1_3:+7322965 Msa0100880:CDS
GAATGTGTGTTGTTCTCATA+GGG 0.458247 1_3:-7327432 None:intergenic
CTACGATCGGGACTTCTCAC+AGG 0.459140 1_3:-7327475 None:intergenic
TCGATATTTGCTCGGACGTG+TGG 0.459478 1_3:+7328860 Msa0100880:three_prime_UTR
ACTTCTGTCAGGTCTATAGT+TGG 0.460346 1_3:-7327024 None:intergenic
TACCGAATTCGGACCTTTCA+GGG 0.460747 1_3:+7328621 Msa0100880:three_prime_UTR
GCATTCTAACCTGGGAACTT+GGG 0.462406 1_3:-7324391 None:intergenic
TCTCCCCTTCCTCCCTCTCA+CGG 0.463089 1_3:-7327395 None:intergenic
CCTCTGCTTGCCACTCTGAC+AGG 0.466727 1_3:-7327694 None:intergenic
CTTCTGGCAGATGATCTAAC+TGG 0.466999 1_3:-7327622 None:intergenic
CTGATAACTGGGGATATGGA+TGG 0.468909 1_3:-7328893 None:intergenic
CTCCTCTTTGGACTAATGCT+CGG 0.471032 1_3:-7327256 None:intergenic
GCAGGAGTCCATCTCGATCC+AGG 0.473773 1_3:+7328464 Msa0100880:CDS
AGAAGTCTCAGCAGGAGTTC+CGG 0.476303 1_3:+7327640 Msa0100880:CDS
ATCGCCATAGATAGAAGGCC+TGG 0.476516 1_3:-7324544 None:intergenic
TACCTTCGTGCTCGGTAAGG+TGG 0.478800 1_3:-7328370 None:intergenic
TAGTCATGAAGTGCGGAGAA+AGG 0.479480 1_3:+7325555 Msa0100880:CDS
GGAGACTTTATCAATCGAAA+TGG 0.482357 1_3:+7323754 Msa0100880:CDS
AGTCATGAAGTGCGGAGAAA+GGG 0.483951 1_3:+7325556 Msa0100880:CDS
GCAGCCTAGCAACGGCATCA+AGG 0.484401 1_3:+7327001 Msa0100880:CDS
TTGAAGAAAATTGAAGATGT+AGG 0.484894 1_3:+7325228 Msa0100880:CDS
CCTGTGAGGTACCGCTATAA+TGG 0.487018 1_3:+7327892 Msa0100880:CDS
CGATATTTGCTCGGACGTGT+GGG 0.487868 1_3:+7328861 Msa0100880:three_prime_UTR
ATGGAAGGAATGACCGTGAC+AGG 0.488207 1_3:+7327911 Msa0100880:CDS
TGGAAAATCACTGCACTACA+AGG 0.491246 1_3:+7323380 Msa0100880:CDS
GAGTTCTTCTCCGTGGCGGT+GGG 0.491381 1_3:-7328083 None:intergenic
GGAGGAAAAGAAAGAGATCT+AGG 0.492138 1_3:+7325743 Msa0100880:CDS
GATAAATCAATTCCTAGCAT+TGG 0.493739 1_3:-7328744 None:intergenic
TGTGTCTGGAAGTTTATGTA+TGG 0.494033 1_3:+7329053 Msa0100880:three_prime_UTR
TTATGGACGTGTCTGTAGAC+GGG 0.495599 1_3:+7322946 Msa0100880:CDS
AAGCTGATCACCATCTTGAT+AGG 0.495613 1_3:+7324611 Msa0100880:CDS
ATGATAATCCAGGAAAATCT+AGG 0.495881 1_3:+7327072 Msa0100880:CDS
CTTTGAGAAACAGATCTGGC+AGG 0.498898 1_3:-7327514 None:intergenic
GGAGTCGTAGCCCTGTTCGT+AGG 0.504871 1_3:+7327737 Msa0100880:CDS
TAAGGTGAGGTTTCCCTGAA+AGG 0.506897 1_3:-7328634 None:intergenic
AAACCTCACCTTAAATGAGC+TGG 0.508169 1_3:+7328644 Msa0100880:three_prime_UTR
ACCTTCGTGCTCGGTAAGGT+GGG 0.510824 1_3:-7328369 None:intergenic
AGGCTAAAGCATGATTCTCC+AGG 0.510991 1_3:+7324526 Msa0100880:CDS
GTGCGTCATCATCCCTCAGC+AGG 0.515147 1_3:+7328446 Msa0100880:CDS
AGCGGTTGCGAATTGGGCTA+GGG 0.516195 1_3:-7328402 None:intergenic
CCATTATAGCGGTACCTCAC+AGG 0.516542 1_3:-7327892 None:intergenic
TTTATGGACGTGTCTGTAGA+CGG 0.517412 1_3:+7322945 Msa0100880:CDS
AGCATATACCCCAAGTTCCC+AGG 0.517801 1_3:+7324382 Msa0100880:CDS
AGAAGCTCAGACGGAAAGAA+AGG 0.519047 1_3:+7328550 Msa0100880:CDS
GTGTCCTGCTTCTCCTACTC+CGG 0.520890 1_3:-7328330 None:intergenic
AGAGATCAAAACGTAAATCA+AGG 0.521159 1_3:+7325833 Msa0100880:CDS
TAGTGATTCCACAGAAGACC+TGG 0.522322 1_3:-7328482 None:intergenic
GGTACCGGAGTAGGAGAAGC+AGG 0.524088 1_3:+7328326 Msa0100880:intron
GAGTCGTAGCCCTGTTCGTA+GGG 0.524982 1_3:+7327738 Msa0100880:CDS
TTGGCCTTGATGCCGTTGCT+AGG 0.525249 1_3:-7327005 None:intergenic
GTTCTCCTGATTCAAGCTAA+AGG 0.528237 1_3:+7328593 Msa0100880:CDS
CTATACCTTCGTGCTCGGTA+AGG 0.528467 1_3:-7328373 None:intergenic
AAGTTTGAAAATAACCTTGG+TGG 0.528572 1_3:-7328105 None:intergenic
TGATAACTGGGGATATGGAT+GGG 0.534088 1_3:-7328892 None:intergenic
GTGGGCTCCTAAAACGCCTA+GGG 0.534974 1_3:-7328065 None:intergenic
TCTCCAAAACTGAGGATGAC+TGG 0.537196 1_3:-7326896 None:intergenic
TCAGCAGAAGCCCCGTGAGA+GGG 0.541353 1_3:+7327383 Msa0100880:CDS
AGTAACTAATTCCAGCAAGC+AGG 0.545204 1_3:-7328702 None:intergenic
GACCTGACAGAAGTGAAGAA+AGG 0.545679 1_3:+7327033 Msa0100880:CDS
ATCTCGATCCAGGTCTTCTG+TGG 0.546091 1_3:+7328474 Msa0100880:CDS
CTCAGACGGAAAGAAAGGCC+TGG 0.546220 1_3:+7328555 Msa0100880:CDS
TCTGGAAGTTTATGTATGGA+TGG 0.548483 1_3:+7329057 Msa0100880:three_prime_UTR
AGTAAGTATCGATATTTGCT+CGG 0.548811 1_3:+7328852 Msa0100880:three_prime_UTR
ACTACAAGACACTGATAACT+GGG 0.549548 1_3:-7328904 None:intergenic
CATTCTAACCTGGGAACTTG+GGG 0.552470 1_3:-7324390 None:intergenic
ATTCTTCATAAACCAATGCT+AGG 0.554545 1_3:+7328732 Msa0100880:three_prime_UTR
TGTTTATTCTGTAGGATACA+GGG 0.555311 1_3:+7323569 Msa0100880:intron
CATCTGCCAGAAGTCTCAGC+AGG 0.557853 1_3:+7327632 Msa0100880:CDS
GGTGGGCTCCTAAAACGCCT+AGG 0.559539 1_3:-7328066 None:intergenic
AAACGTATCAGAAGGGGAAG+AGG 0.560741 1_3:+7327817 Msa0100880:CDS
CTTCCAGCTCATTTAAGGTG+AGG 0.562565 1_3:-7328647 None:intergenic
ACGGCTTTGAGAAACAGATC+TGG 0.562906 1_3:-7327518 None:intergenic
GCAGAAGCCCCGTGAGAGGG+AGG 0.564588 1_3:+7327386 Msa0100880:CDS
TCCCCTTCCTCCCTCTCACG+GGG 0.567721 1_3:-7327393 None:intergenic
AGATTCCATGTCGGAATCTG+AGG 0.568884 1_3:-7325647 None:intergenic
TCTGTAGGATACAGGGCTGA+TGG 0.570521 1_3:+7323576 Msa0100880:intron
AACGATAATTCTAACGGCAA+AGG 0.571157 1_3:+7326237 Msa0100880:CDS
GCTACTTAATTTACCTGTCA+CGG 0.571224 1_3:-7327924 None:intergenic
TTGCTAAGACTTCTACGATC+GGG 0.572343 1_3:-7327487 None:intergenic
TGTCAAGAAAGAGCATAAGC+AGG 0.573617 1_3:+7327596 Msa0100880:CDS
AAAGTCCTCGTGCTCTATCG+CGG 0.575279 1_3:+7327305 Msa0100880:CDS
GAAGATGTAGGCAATGAAGA+AGG 0.580162 1_3:+7325240 Msa0100880:CDS
GACACGTCCATAAACACCAT+GGG 0.580289 1_3:-7322936 None:intergenic
ATACTCTAGCAGAACTCCTA+CGG 0.580573 1_3:-7327537 None:intergenic
TCATGCTAACCATAAAGGAT+AGG 0.580961 1_3:-7328959 None:intergenic
TATCGCGGAGGAGTTTGAGC+AGG 0.581388 1_3:+7327320 Msa0100880:CDS
TTGGGCTATACCTTCGTGCT+CGG 0.581450 1_3:-7328378 None:intergenic
GTCAGCAGAAGCCCCGTGAG+AGG 0.581670 1_3:+7327382 Msa0100880:CDS
GCTTCTCAAAGGAACTCGGC+CGG 0.583443 1_3:-7327659 None:intergenic
CTTCACCAAAACGTATCAGA+AGG 0.584180 1_3:+7327809 Msa0100880:CDS
CAAGTTCATCTAGTGATGAC+AGG 0.586648 1_3:+7325719 Msa0100880:CDS
TCGAGATGGACTCCTGCTGA+GGG 0.589178 1_3:-7328458 None:intergenic
TCTCCTTCTAGAAGCTCAGA+CGG 0.589827 1_3:+7328541 Msa0100880:CDS
GTGTCCTTGCCCTACGAACA+GGG 0.590564 1_3:-7327747 None:intergenic
GACGTGATGGATGATAATCC+AGG 0.591026 1_3:+7327062 Msa0100880:CDS
AATACTCATACTCTTGCTCA+CGG 0.593043 1_3:-7327209 None:intergenic
AAAAGCATGAGTTTAACTGA+TGG 0.593260 1_3:+7328928 Msa0100880:three_prime_UTR
ACAGAAGACCTGGATCGAGA+TGG 0.594604 1_3:-7328472 None:intergenic
GGAGAATCATGCTTTAGCCT+AGG 0.596116 1_3:-7324523 None:intergenic
AAGAGTAACGATAATTCTAA+CGG 0.596671 1_3:+7326231 Msa0100880:CDS
TTCACCAAAACGTATCAGAA+GGG 0.600691 1_3:+7327810 Msa0100880:CDS
AACGTCGAGAAAAGAGGCGA+AGG 0.601122 1_3:+7325800 Msa0100880:CDS
CCTGTCAGAGTGGCAAGCAG+AGG 0.601861 1_3:+7327694 Msa0100880:CDS
TAAGCAAAGATAACAGGTCA+AGG 0.602811 1_3:+7328518 Msa0100880:CDS
AATGGAGCGCAGCCTAGCAA+CGG 0.602971 1_3:+7326993 Msa0100880:CDS
ACCTCACAGGAGACCGAGAG+GGG 0.604150 1_3:-7327879 None:intergenic
GTAGCCCTGTTCGTAGGGCA+AGG 0.604255 1_3:+7327743 Msa0100880:CDS
GATAAACAGACCTATCAAGA+TGG 0.604811 1_3:-7324621 None:intergenic
CTATATGTAGGTACCGGAGT+AGG 0.605022 1_3:+7328317 Msa0100880:intron
TTTGAGAAACAGATCTGGCA+GGG 0.605173 1_3:-7327513 None:intergenic
ATCGAGATGGACTCCTGCTG+AGG 0.606352 1_3:-7328459 None:intergenic
AACCATTTCCATAAGAGACC+AGG 0.606821 1_3:-7328573 None:intergenic
GATAACTGGGGATATGGATG+GGG 0.611519 1_3:-7328891 None:intergenic
CTTGCTAAGACTTCTACGAT+CGG 0.613367 1_3:-7327488 None:intergenic
TGAGGTACCGCTATAATGGA+AGG 0.613583 1_3:+7327896 Msa0100880:CDS
GATACAGAAGGTACTCCCCT+AGG 0.614974 1_3:+7328049 Msa0100880:CDS
CATCTAGTGATGACAGGCGG+AGG 0.620885 1_3:+7325725 Msa0100880:CDS
AGAAAGGCAGCATGACGTGA+TGG 0.628293 1_3:+7327049 Msa0100880:CDS
GCCCGAGCATTAGTCCAAAG+AGG 0.628924 1_3:+7327254 Msa0100880:CDS
CTGGAAGTTTATGTATGGAT+GGG 0.629122 1_3:+7329058 Msa0100880:three_prime_UTR
TACGATCGGGACTTCTCACA+GGG 0.630815 1_3:-7327474 None:intergenic
CGAGCATTAGTCCAAAGAGG+AGG 0.631871 1_3:+7327257 Msa0100880:CDS
TTGCCACTCTGACAGGACTT+CGG 0.633300 1_3:-7327687 None:intergenic
TCAGATATTCAGGATACAGA+AGG 0.633643 1_3:+7328037 Msa0100880:intron
GATCTGTTTCTCAAAGCCGT+AGG 0.636621 1_3:+7327521 Msa0100880:CDS
TACCTCACAGGAGACCGAGA+GGG 0.636761 1_3:-7327880 None:intergenic
GGGCAAGGACACCTCGTGGG+AGG 0.636939 1_3:+7327758 Msa0100880:CDS
GTCCTGTTAGAAGAATAAGC+AGG 0.637563 1_3:+7327344 Msa0100880:CDS
GGTGGAGTTCTTCTCCGTGG+CGG 0.641967 1_3:-7328087 None:intergenic
CATCACGAAGAACAGTCAGT+AGG 0.643686 1_3:+7327560 Msa0100880:CDS
GGAAAATCACTGCACTACAA+GGG 0.644386 1_3:+7323381 Msa0100880:CDS
TAATGCTTCTCAAAGGAACT+CGG 0.644665 1_3:-7327663 None:intergenic
CTCCTCCGCGATAGAGCACG+AGG 0.645637 1_3:-7327310 None:intergenic
AGGAAAGATAAACATAGACA+TGG 0.646477 1_3:+7325763 Msa0100880:CDS
GGTCATTCCTTCCATTATAG+CGG 0.649077 1_3:-7327903 None:intergenic
TACGACTCCTGGAATAGCTG+CGG 0.649288 1_3:-7327723 None:intergenic
TCACCAAAACGTATCAGAAG+GGG 0.649609 1_3:+7327811 Msa0100880:CDS
GGTGGGCTTCGTGATATAGA+CGG 0.650609 1_3:-7328352 None:intergenic
CGTAGGGCAAGGACACCTCG+TGG 0.652658 1_3:+7327754 Msa0100880:CDS
CTTCGGCTAATGCTTCTCAA+AGG 0.656324 1_3:-7327670 None:intergenic
ACTGTCAAAATAATTAATTG+TGG 0.662678 1_3:+7325276 Msa0100880:CDS
TATGGACGTGTCTGTAGACG+GGG 0.663263 1_3:+7322947 Msa0100880:CDS
CTTGGTGGAGTTCTTCTCCG+TGG 0.663626 1_3:-7328090 None:intergenic
AGACACGTCCATAAACACCA+TGG 0.666006 1_3:-7322937 None:intergenic
TGAACTTGTGTAAGATGACG+AGG 0.669193 1_3:-7325704 None:intergenic
AGGTTTAGCAGAAGTCCAAG+TGG 0.670229 1_3:+7327277 Msa0100880:CDS
TAGCCGAAGTCCTGTCAGAG+TGG 0.673404 1_3:+7327684 Msa0100880:CDS
ACTTTCAGAAGATTCCATGT+CGG 0.675815 1_3:-7325656 None:intergenic
TATTCACACGAGGAGGTGAG+CGG 0.678307 1_3:-7328420 None:intergenic
TAATTGTGGTGAACACAATG+AGG 0.680177 1_3:+7325290 Msa0100880:CDS
TGGGCTCCTAAAACGCCTAG+GGG 0.681447 1_3:-7328064 None:intergenic
TAACTCTTTCTCCAAAACTG+AGG 0.688409 1_3:-7326904 None:intergenic
GTCCTCGTGCTCTATCGCGG+AGG 0.692339 1_3:+7327308 Msa0100880:CDS
TAGTTCCTCAGATTCCGACA+TGG 0.693411 1_3:+7325642 Msa0100880:CDS
AATTGTGGTGAACACAATGA+GGG 0.693875 1_3:+7325291 Msa0100880:CDS
TAAACTTCCAGACACACGAA+CGG 0.695383 1_3:-7329046 None:intergenic
GTAGGGCAAGGACACCTCGT+GGG 0.696905 1_3:+7327755 Msa0100880:CDS
GCACGCCTATTCACACGAGG+AGG 0.702677 1_3:-7328427 None:intergenic
GTACCTCACAGGAGACCGAG+AGG 0.704520 1_3:-7327881 None:intergenic
TGCCATTTCAACTTACTACG+AGG 0.709927 1_3:-7328766 None:intergenic
CTACAAGACACTGATAACTG+GGG 0.710341 1_3:-7328903 None:intergenic
GATCAAAACGTAAATCAAGG+AGG 0.710356 1_3:+7325836 Msa0100880:CDS
AAGCAAATAGTCATGAAGTG+CGG 0.712374 1_3:+7325548 Msa0100880:CDS
GTTCATCTAGTGATGACAGG+CGG 0.717464 1_3:+7325722 Msa0100880:CDS
CCTCACAGGAGACCGAGAGG+GGG 0.726559 1_3:-7327878 None:intergenic
TTCGACAGACTCCTCCCACG+AGG 0.730211 1_3:-7327769 None:intergenic
GCCCACCTTACCGAGCACGA+AGG 0.735674 1_3:+7328368 Msa0100880:CDS
ACACGTCCATAAACACCATG+GGG 0.743718 1_3:-7322935 None:intergenic
CACGGAGAAGAACTCCACCA+AGG 0.743784 1_3:+7328091 Msa0100880:CDS
GACGCACGCCTATTCACACG+AGG 0.756690 1_3:-7328430 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGTTTAAGATTTA+TGG + chr1_3:7325874-7325893 Msa0100880:intron 10.0%
!! TTAAATTCTAATTAATACTA+AGG + chr1_3:7327956-7327975 Msa0100880:intron 10.0%
!!! AATTTTTTTTTTAAACTTCT+AGG + chr1_3:7328142-7328161 Msa0100880:intron 10.0%
!! TTCAATTGTTAAAACAATAA+GGG - chr1_3:7322272-7322291 None:intergenic 15.0%
!! ATTCAATTGTTAAAACAATA+AGG - chr1_3:7322273-7322292 None:intergenic 15.0%
!! AACAATTGAATATAAAATTG+TGG + chr1_3:7322282-7322301 Msa0100880:intron 15.0%
!! TTAAAATTAATAGTAAGTCA+CGG - chr1_3:7324046-7324065 None:intergenic 15.0%
!! AGTCAAATTATTATAAAAAG+AGG - chr1_3:7324877-7324896 None:intergenic 15.0%
!!! ATTAATTATTTTGACAGTTA+CGG - chr1_3:7325274-7325293 None:intergenic 15.0%
!! AGAGATAAAAAAAAAATTGA+AGG - chr1_3:7326383-7326402 None:intergenic 15.0%
!! GGTATAAAAAATGTTTATGT+TGG - chr1_3:7321291-7321310 None:intergenic 20.0%
!! TATAAAAACGAAAACGAAAT+TGG - chr1_3:7321491-7321510 None:intergenic 20.0%
!!! TTTTTCAATTGATAACTGTT+AGG + chr1_3:7321702-7321721 Msa0100880:intron 20.0%
!!! ATGAATAAGGTATTCTTTAT+AGG + chr1_3:7321772-7321791 Msa0100880:intron 20.0%
!!! TAAAACAGTTTAAGACATAA+CGG - chr1_3:7322178-7322197 None:intergenic 20.0%
!!! GTTTTCTAATTTTAGATTGT+TGG + chr1_3:7322859-7322878 Msa0100880:intron 20.0%
!!! TTTTAGATTGTTGGTTAATT+TGG + chr1_3:7322868-7322887 Msa0100880:intron 20.0%
!!! AAATCAGTTATTTGTTGATT+AGG - chr1_3:7323294-7323313 None:intergenic 20.0%
!! TGACACATTTCAAAAAAAAA+GGG - chr1_3:7323322-7323341 None:intergenic 20.0%
!! ATGACACATTTCAAAAAAAA+AGG - chr1_3:7323323-7323342 None:intergenic 20.0%
!!! CTTCCATCTATATTATTTTT+TGG + chr1_3:7323461-7323480 Msa0100880:intron 20.0%
!! CTACCAAAAAATAATATAGA+TGG - chr1_3:7323467-7323486 None:intergenic 20.0%
!!! TACTGTCTTATTTTTTTTTG+TGG + chr1_3:7323502-7323521 Msa0100880:intron 20.0%
!!! TTTTTTTTTGTGGTTGAAAA+TGG + chr1_3:7323512-7323531 Msa0100880:intron 20.0%
!!! TTTCTTGTGATATAGTTTTA+AGG + chr1_3:7323610-7323629 Msa0100880:intron 20.0%
!! GAAAAATAATACACAATATG+AGG - chr1_3:7323801-7323820 None:intergenic 20.0%
!!! TTTGAAATCATGTAATGTTT+TGG + chr1_3:7324137-7324156 Msa0100880:intron 20.0%
!! ACTGTCAAAATAATTAATTG+TGG + chr1_3:7325276-7325295 Msa0100880:CDS 20.0%
!!! ACATTTCATCAAACTTTTAA+AGG + chr1_3:7325398-7325417 Msa0100880:intron 20.0%
!!! TTCGTATTTTTTGTTTTAGA+TGG + chr1_3:7325481-7325500 Msa0100880:intron 20.0%
!! TATATAACTGACATACTAAT+AGG - chr1_3:7325987-7326006 None:intergenic 20.0%
!! TATTAGTATGTCAGTTATAT+AGG + chr1_3:7325986-7326005 Msa0100880:intron 20.0%
!!! ACTTTGATTAACAATTTTGA+TGG + chr1_3:7326140-7326159 Msa0100880:intron 20.0%
!! AGGATTGACAAATAATTTAT+TGG - chr1_3:7326363-7326382 None:intergenic 20.0%
!! AGTATGTTAAAACTTAACTT+CGG - chr1_3:7326771-7326790 None:intergenic 20.0%
!! CTATAAAATATCATAGAATG+AGG - chr1_3:7326799-7326818 None:intergenic 20.0%
!! TAATTAATACTAAGGTAGTA+TGG + chr1_3:7327964-7327983 Msa0100880:intron 20.0%
!! CAAAACCTAATTTTGAATTG+AGG - chr1_3:7321389-7321408 None:intergenic 25.0%
!!! ATTTTTACGAAAGTACGAAA+CGG + chr1_3:7321586-7321605 Msa0100880:intron 25.0%
! AAACACTAAACTAACAGAAA+GGG - chr1_3:7321684-7321703 None:intergenic 25.0%
! AAAACACTAAACTAACAGAA+AGG - chr1_3:7321685-7321704 None:intergenic 25.0%
!!! GCTATTTTTATAAGCTATGT+CGG + chr1_3:7322025-7322044 Msa0100880:intron 25.0%
!!! TAAGTTTTGTGAGAATGTTT+TGG - chr1_3:7322116-7322135 None:intergenic 25.0%
!! AAAACAGTTTAAGACATAAC+GGG - chr1_3:7322177-7322196 None:intergenic 25.0%
!!! ATGTCTTAAACTGTTTTAAC+AGG + chr1_3:7322180-7322199 Msa0100880:intron 25.0%
!!! TAAGTTTTGTGAGACTATTT+GGG - chr1_3:7322211-7322230 None:intergenic 25.0%
!!! TTAAGTTTTGTGAGACTATT+TGG - chr1_3:7322212-7322231 None:intergenic 25.0%
! TGTAAATCAAGATTTCATTG+CGG - chr1_3:7322373-7322392 None:intergenic 25.0%
! ATTTGATTCAGCGTTTATTT+AGG + chr1_3:7322607-7322626 Msa0100880:intron 25.0%
!! AATTTCCTGTTATCTTGTTT+CGG + chr1_3:7322644-7322663 Msa0100880:intron 25.0%
! TTCACAAGTTATAACTACAA+TGG - chr1_3:7322676-7322695 None:intergenic 25.0%
! TTGACTAGTAAGAAAAACTA+TGG + chr1_3:7322899-7322918 Msa0100880:exon 25.0%
! TCAAAAACCATTCTTTCATA+AGG - chr1_3:7322975-7322994 None:intergenic 25.0%
!! TTATGAAAGAATGGTTTTTG+AGG + chr1_3:7322974-7322993 Msa0100880:CDS 25.0%
!!! AATACCATTAGGTTGAATAT+TGG - chr1_3:7323038-7323057 None:intergenic 25.0%
! ATGCAAATCAAATGTATTAC+CGG - chr1_3:7323128-7323147 None:intergenic 25.0%
! ACATTTCAAAAAAAAAGGGA+AGG - chr1_3:7323318-7323337 None:intergenic 25.0%
! GTAAAAACATACCTTAACAA+TGG - chr1_3:7323436-7323455 None:intergenic 25.0%
! AATAATGCACACAAATAATC+TGG - chr1_3:7323687-7323706 None:intergenic 25.0%
! AATTTGAGTGTGTGTATTAA+TGG + chr1_3:7323709-7323728 Msa0100880:intron 25.0%
!!! ATTATTTTTCCACCTTTTGA+AGG + chr1_3:7323811-7323830 Msa0100880:intron 25.0%
! ATCAAATTGAAACCTTCAAA+AGG - chr1_3:7323826-7323845 None:intergenic 25.0%
!! ATATGCATAGTCAATTTTGA+AGG + chr1_3:7323849-7323868 Msa0100880:intron 25.0%
!!! AGCGATTTGATTTTCTAATT+TGG + chr1_3:7323997-7324016 Msa0100880:intron 25.0%
!!! GCGATTTGATTTTCTAATTT+GGG + chr1_3:7323998-7324017 Msa0100880:intron 25.0%
!!! TTCTAATTTGGGTTAGTTTT+TGG + chr1_3:7324009-7324028 Msa0100880:intron 25.0%
!! GAACTCTTTTTACATTACAT+TGG - chr1_3:7324194-7324213 None:intergenic 25.0%
!! AAATCCATGTAAGATGTTTT+TGG + chr1_3:7324778-7324797 Msa0100880:intron 25.0%
!!! TTTTGAAACATACACTCAAA+TGG + chr1_3:7324951-7324970 Msa0100880:intron 25.0%
! TTGAAGAAAATTGAAGATGT+AGG + chr1_3:7325228-7325247 Msa0100880:CDS 25.0%
! TTTATCATCACTCATATGAA+GGG - chr1_3:7325356-7325375 None:intergenic 25.0%
! ATTTATCATCACTCATATGA+AGG - chr1_3:7325357-7325376 None:intergenic 25.0%
!!! TTATTTATTTTCCCTCTTCA+AGG + chr1_3:7325438-7325457 Msa0100880:intron 25.0%
! ATACGAAGATTCAAATAAAC+AGG - chr1_3:7325468-7325487 None:intergenic 25.0%
! AAGAGTAACGATAATTCTAA+CGG + chr1_3:7326231-7326250 Msa0100880:CDS 25.0%
! TACATATCAACAAAAAGTGA+AGG - chr1_3:7326329-7326348 None:intergenic 25.0%
!!! TTATATTTTAGGAATTGGCT+TGG - chr1_3:7326415-7326434 None:intergenic 25.0%
!!! CTAGCTTATATTTTAGGAAT+TGG - chr1_3:7326420-7326439 None:intergenic 25.0%
!!! CAACATCTAGCTTATATTTT+AGG - chr1_3:7326426-7326445 None:intergenic 25.0%
! AAATATAAGCTAGATGTTGT+TGG + chr1_3:7326427-7326446 Msa0100880:intron 25.0%
! AATATAAGCTAGATGTTGTT+GGG + chr1_3:7326428-7326447 Msa0100880:intron 25.0%
! ATTTACATGTAAAACGACAA+TGG - chr1_3:7326497-7326516 None:intergenic 25.0%
! TTTACATGTAAATGTAATCG+TGG + chr1_3:7326504-7326523 Msa0100880:intron 25.0%
! GAAAGAAAAAAAAAATCAGC+AGG - chr1_3:7326563-7326582 None:intergenic 25.0%
! CAATAGAAAGCAAGAAAAAA+GGG - chr1_3:7326631-7326650 None:intergenic 25.0%
! ACAAGTAAAATTTCATTTGC+TGG + chr1_3:7326719-7326738 Msa0100880:intron 25.0%
! TTTGAATAAAATACCAGATC+TGG - chr1_3:7327151-7327170 None:intergenic 25.0%
! ATCAAGTTTGAAAATAACCT+TGG - chr1_3:7328111-7328130 None:intergenic 25.0%
! ATGCTATCATTATTATTCAG+TGG - chr1_3:7328247-7328266 None:intergenic 25.0%
!!! TTATCTTTGCTTACTTTTCT+TGG - chr1_3:7328511-7328530 None:intergenic 25.0%
! AATTATCATGCTAACCATAA+AGG - chr1_3:7328967-7328986 None:intergenic 25.0%
!! CAATTTTCACACATCTATAT+GGG - chr1_3:7329000-7329019 None:intergenic 25.0%
!! ACAATTTTCACACATCTATA+TGG - chr1_3:7329001-7329020 None:intergenic 25.0%
!!! TTATTTTTGATGCTTTCAGA+TGG + chr1_3:7329088-7329107 Msa0100880:three_prime_UTR 25.0%
TCCTTCCTCAATTCAAAATT+AGG + chr1_3:7321381-7321400 Msa0100880:intron 30.0%
! ACCTAATTTTGAATTGAGGA+AGG - chr1_3:7321385-7321404 None:intergenic 30.0%
CACTCAATTGAAGATTATTG+TGG + chr1_3:7321563-7321582 Msa0100880:intron 30.0%
! AACAACTTATTTGCTGCTTA+TGG + chr1_3:7321738-7321757 Msa0100880:intron 30.0%
!! GCTATTTTCATCAACTATCT+TGG + chr1_3:7321837-7321856 Msa0100880:intron 30.0%
AATAAGGTGAAAACAGCTTA+TGG + chr1_3:7321872-7321891 Msa0100880:intron 30.0%
GATAAGTTGTTTATCCAAAC+AGG - chr1_3:7321906-7321925 None:intergenic 30.0%
GTTTGGATAAACAACTTATC+TGG + chr1_3:7321906-7321925 Msa0100880:intron 30.0%
CTTATGCTTATCATGATAAG+TGG + chr1_3:7321931-7321950 Msa0100880:intron 30.0%
TCAAATAAGCCAATTCAAAC+AGG + chr1_3:7322151-7322170 Msa0100880:intron 30.0%
GTAAATCAAGATTTCATTGC+GGG - chr1_3:7322372-7322391 None:intergenic 30.0%
! TTCAGCGTTTATTTAGGATA+AGG + chr1_3:7322613-7322632 Msa0100880:intron 30.0%
! GTAGTTATAACTTGTGAAGT+CGG + chr1_3:7322678-7322697 Msa0100880:intron 30.0%
CTTTCCAATATTCAACCTAA+TGG + chr1_3:7323031-7323050 Msa0100880:intron 30.0%
! GTTATTTGTTGATTAGGAAG+AGG - chr1_3:7323288-7323307 None:intergenic 30.0%
! TAAGACAGTAGTCTTACTAT+AGG - chr1_3:7323492-7323511 None:intergenic 30.0%
CAATGGAAACTGACAAAAAT+AGG - chr1_3:7323551-7323570 None:intergenic 30.0%
GTTTCCATTGTTTATTCTGT+AGG + chr1_3:7323561-7323580 Msa0100880:intron 30.0%
GTATCCTACAGAATAAACAA+TGG - chr1_3:7323568-7323587 None:intergenic 30.0%
TTGTTTATTCTGTAGGATAC+AGG + chr1_3:7323568-7323587 Msa0100880:intron 30.0%
TGTTTATTCTGTAGGATACA+GGG + chr1_3:7323569-7323588 Msa0100880:intron 30.0%
AAATTGAAACCTTCAAAAGG+TGG - chr1_3:7323823-7323842 None:intergenic 30.0%
! TGGTGATTTCTTTTACTAGT+CGG + chr1_3:7323910-7323929 Msa0100880:intron 30.0%
! ATTTCTTTTACTAGTCGGTT+AGG + chr1_3:7323915-7323934 Msa0100880:intron 30.0%
AATTAAAACCATGCCAACAT+TGG + chr1_3:7324065-7324084 Msa0100880:intron 30.0%
! TTTTTCCTACGTGTTTTGTA+GGG + chr1_3:7324347-7324366 Msa0100880:intron 30.0%
! TGCCATTTAGTTTAGTACTT+TGG + chr1_3:7324658-7324677 Msa0100880:intron 30.0%
! GCCATTTAGTTTAGTACTTT+GGG + chr1_3:7324659-7324678 Msa0100880:intron 30.0%
! TCCCAAAGTACTAAACTAAA+TGG - chr1_3:7324663-7324682 None:intergenic 30.0%
TATGCCAAAAACATCTTACA+TGG - chr1_3:7324785-7324804 None:intergenic 30.0%
ACATACACTCAAATGGAAAT+TGG + chr1_3:7324958-7324977 Msa0100880:intron 30.0%
AAAGAATAGTGAACAGAGTA+AGG - chr1_3:7325066-7325085 None:intergenic 30.0%
TCTGTTCACTATTCTTTCAT+TGG + chr1_3:7325069-7325088 Msa0100880:intron 30.0%
CTGTTCACTATTCTTTCATT+GGG + chr1_3:7325070-7325089 Msa0100880:intron 30.0%
AAGACTCACAAGTCAAAAAT+TGG + chr1_3:7325508-7325527 Msa0100880:CDS 30.0%
AAGTCAAAAATTGGAAGGAA+TGG + chr1_3:7325517-7325536 Msa0100880:CDS 30.0%
! GGAAAGCATAAAAAATCTTC+AGG + chr1_3:7325577-7325596 Msa0100880:CDS 30.0%
AGGAAAGATAAACATAGACA+TGG + chr1_3:7325763-7325782 Msa0100880:CDS 30.0%
AGAGATCAAAACGTAAATCA+AGG + chr1_3:7325833-7325852 Msa0100880:CDS 30.0%
TATATCATGTGCTCTCATAT+AGG + chr1_3:7325947-7325966 Msa0100880:intron 30.0%
TAGTATGTCAGTTATATAGG+TGG + chr1_3:7325989-7326008 Msa0100880:intron 30.0%
!! TTTTGTCTTGTTGAGAACAA+TGG - chr1_3:7326089-7326108 None:intergenic 30.0%
AAAGATCATTCTCAGATAGA+TGG + chr1_3:7326291-7326310 Msa0100880:CDS 30.0%
ATATAAGCTAGATGTTGTTG+GGG + chr1_3:7326429-7326448 Msa0100880:intron 30.0%
ACGACAAATCATTATTTACC+TGG - chr1_3:7326468-7326487 None:intergenic 30.0%
CCAATAGAAAGCAAGAAAAA+AGG - chr1_3:7326632-7326651 None:intergenic 30.0%
!!! CCTTTTTTCTTGCTTTCTAT+TGG + chr1_3:7326629-7326648 Msa0100880:intron 30.0%
! ATCTTGTTTGCCTTAGAATT+GGG + chr1_3:7326673-7326692 Msa0100880:intron 30.0%
! GATTCATTTTCCCAATTCTA+AGG - chr1_3:7326686-7326705 None:intergenic 30.0%
ATGTTAAAACTTAACTTCGG+TGG - chr1_3:7326768-7326787 None:intergenic 30.0%
TCCACTGAATCATAAAAAGA+GGG + chr1_3:7326929-7326948 Msa0100880:CDS 30.0%
GAAGAATTCCCAAAAGAAAA+TGG + chr1_3:7326975-7326994 Msa0100880:CDS 30.0%
ATGATAATCCAGGAAAATCT+AGG + chr1_3:7327072-7327091 Msa0100880:CDS 30.0%
GTAAGCATAAGAAATAACAG+AGG - chr1_3:7327120-7327139 None:intergenic 30.0%
!! TTTATTCAAAGTTGATGAGC+AGG + chr1_3:7327161-7327180 Msa0100880:intron 30.0%
AAAGATACTCTTATGCTAGA+AGG + chr1_3:7327848-7327867 Msa0100880:CDS 30.0%
ACATACTCTCATATTCTCAA+CGG - chr1_3:7327993-7328012 None:intergenic 30.0%
AAGTTTGAAAATAACCTTGG+TGG - chr1_3:7328108-7328127 None:intergenic 30.0%
AGGTGAAGATATTGTACTTA+TGG + chr1_3:7328162-7328181 Msa0100880:intron 30.0%
! CATGATTTTATTCATCGTTG+AGG + chr1_3:7328185-7328204 Msa0100880:intron 30.0%
TCATTATTATTCAGTGGCAT+GGG - chr1_3:7328241-7328260 None:intergenic 30.0%
ATCATTATTATTCAGTGGCA+TGG - chr1_3:7328242-7328261 None:intergenic 30.0%
TTATGTGTAAGCCTATATGT+AGG + chr1_3:7328305-7328324 Msa0100880:intron 30.0%
GAAAAGTAAGCAAAGATAAC+AGG + chr1_3:7328512-7328531 Msa0100880:CDS 30.0%
ATTCTTCATAAACCAATGCT+AGG + chr1_3:7328732-7328751 Msa0100880:three_prime_UTR 30.0%
GATAAATCAATTCCTAGCAT+TGG - chr1_3:7328747-7328766 None:intergenic 30.0%
ATGGCATGTTGAAAGATAAT+AGG + chr1_3:7328783-7328802 Msa0100880:three_prime_UTR 30.0%
!! AGTAAGTATCGATATTTGCT+CGG + chr1_3:7328852-7328871 Msa0100880:three_prime_UTR 30.0%
! AAAAGCATGAGTTTAACTGA+TGG + chr1_3:7328928-7328947 Msa0100880:three_prime_UTR 30.0%
GAATTGAGAATCTACGCTTT+GGG - chr1_3:7321312-7321331 None:intergenic 35.0%
AGAATTGAGAATCTACGCTT+TGG - chr1_3:7321313-7321332 None:intergenic 35.0%
! TTCTCTTCTCTTCTCTTTTG+TGG + chr1_3:7321335-7321354 Msa0100880:five_prime_UTR 35.0%
GATAACTGTTAGGTTCTGTT+TGG + chr1_3:7321712-7321731 Msa0100880:intron 35.0%
! TTGGAGCACTTACGAAAATA+AGG + chr1_3:7321856-7321875 Msa0100880:intron 35.0%
TTATGGACAATGAACCTGTT+TGG + chr1_3:7321889-7321908 Msa0100880:intron 35.0%
GCTTATTTGAGCTTATCTAC+AGG - chr1_3:7322141-7322160 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr1_3:7322246-7322265 Msa0100880:intron 35.0%
TAAAACAATAAGGGCCTGTT+TGG - chr1_3:7322263-7322282 None:intergenic 35.0%
ATGAGTCAGTTAGACATTTC+TGG - chr1_3:7322421-7322440 None:intergenic 35.0%
! AGAAATGTCTAACTGACTCA+TGG + chr1_3:7322420-7322439 Msa0100880:intron 35.0%
AATAAAGTACAGCTGCATGT+AGG - chr1_3:7322533-7322552 None:intergenic 35.0%
GTATAGTAGCAGATTGATTG+AGG + chr1_3:7322563-7322582 Msa0100880:intron 35.0%
AGGTGTCAAACACTGAAATT+TGG + chr1_3:7322583-7322602 Msa0100880:intron 35.0%
AAGTCGGCATGAATTTAAGT+AGG + chr1_3:7322694-7322713 Msa0100880:intron 35.0%
GAGGAAAAACGAATACCATT+AGG - chr1_3:7323049-7323068 None:intergenic 35.0%
! CGAAAATTTTCAGCAGTCTT+TGG - chr1_3:7323094-7323113 None:intergenic 35.0%
ACATCATCACCATTGCTTAT+TGG + chr1_3:7323201-7323220 Msa0100880:intron 35.0%
!! GTTGATGATCCAATAAGCAA+TGG - chr1_3:7323213-7323232 None:intergenic 35.0%
GATCATCAACTGAAAGTTCT+TGG + chr1_3:7323223-7323242 Msa0100880:intron 35.0%
! TGCAGTGATTTTCCAGTATT+AGG - chr1_3:7323375-7323394 None:intergenic 35.0%
TTCTTCCATCAGATCGTAAA+AGG + chr1_3:7323408-7323427 Msa0100880:CDS 35.0%
CAAATAATCTGGTCATCAAG+AGG - chr1_3:7323676-7323695 None:intergenic 35.0%
GAGTGTGTGTATTAATGGTT+TGG + chr1_3:7323714-7323733 Msa0100880:intron 35.0%
GGAGACTTTATCAATCGAAA+TGG + chr1_3:7323754-7323773 Msa0100880:CDS 35.0%
GGAAACATGAAAATGGAACA+AGG - chr1_3:7323882-7323901 None:intergenic 35.0%
TGTGACAGGAAACATGAAAA+TGG - chr1_3:7323889-7323908 None:intergenic 35.0%
TTTCATGTTTCCTGTCACAA+TGG + chr1_3:7323890-7323909 Msa0100880:intron 35.0%
AAAGAAATCACCATTGTGAC+AGG - chr1_3:7323903-7323922 None:intergenic 35.0%
CTAAGAAAGTTCCATTTGCT+TGG + chr1_3:7323941-7323960 Msa0100880:intron 35.0%
!! AGATTGGTCTGTCATTTAGT+GGG + chr1_3:7323967-7323986 Msa0100880:intron 35.0%
ATGCAGATAAAAGCCAATGT+TGG - chr1_3:7324081-7324100 None:intergenic 35.0%
AACACGTAGGAAAAAGATAC+AGG - chr1_3:7324342-7324361 None:intergenic 35.0%
! CTTTTTCCTACGTGTTTTGT+AGG + chr1_3:7324346-7324365 Msa0100880:intron 35.0%
!! TTGAACTTTTTCTCCAGCTT+GGG + chr1_3:7324426-7324445 Msa0100880:intron 35.0%
GATAAACAGACCTATCAAGA+TGG - chr1_3:7324624-7324643 None:intergenic 35.0%
GTACTAAACTAAATGGCACT+AGG - chr1_3:7324656-7324675 None:intergenic 35.0%
! ATCAGTTTTCCTCATCCAAA+CGG - chr1_3:7324686-7324705 None:intergenic 35.0%
GTAAAAGCTAGAAACAGCTT+AGG + chr1_3:7324846-7324865 Msa0100880:intron 35.0%
TTAAGTTCTCTGTTTGTCTG+AGG + chr1_3:7324917-7324936 Msa0100880:intron 35.0%
TAAGTTCTCTGTTTGTCTGA+GGG + chr1_3:7324918-7324937 Msa0100880:intron 35.0%
CAAGTAAAGCCTGTTAAACA+AGG - chr1_3:7325014-7325033 None:intergenic 35.0%
TCACTATTCTTTCATTGGGT+TGG + chr1_3:7325074-7325093 Msa0100880:intron 35.0%
TTGCTCATGTGTTCAGTTAT+GGG + chr1_3:7325150-7325169 Msa0100880:intron 35.0%
!!! TTATTTTGACAGTTACGGCT+GGG - chr1_3:7325269-7325288 None:intergenic 35.0%
!!! ATTATTTTGACAGTTACGGC+TGG - chr1_3:7325270-7325289 None:intergenic 35.0%
TAATTGTGGTGAACACAATG+AGG + chr1_3:7325290-7325309 Msa0100880:CDS 35.0%
AATTGTGGTGAACACAATGA+GGG + chr1_3:7325291-7325310 Msa0100880:CDS 35.0%
AGAATTCCTTAGCCCATTTA+AGG + chr1_3:7325316-7325335 Msa0100880:intron 35.0%
GAACTCGGTATTCCTTAAAT+GGG - chr1_3:7325331-7325350 None:intergenic 35.0%
AGAACTCGGTATTCCTTAAA+TGG - chr1_3:7325332-7325351 None:intergenic 35.0%
AAACAGGTATTCCTTGAAGA+GGG - chr1_3:7325452-7325471 None:intergenic 35.0%
TAAACAGGTATTCCTTGAAG+AGG - chr1_3:7325453-7325472 None:intergenic 35.0%
CTCACAAGTCAAAAATTGGA+AGG + chr1_3:7325512-7325531 Msa0100880:CDS 35.0%
AAGCAAATAGTCATGAAGTG+CGG + chr1_3:7325548-7325567 Msa0100880:CDS 35.0%
AAAAATCTTCAGGAGACAGA+AGG + chr1_3:7325587-7325606 Msa0100880:CDS 35.0%
ACTTTCAGAAGATTCCATGT+CGG - chr1_3:7325659-7325678 None:intergenic 35.0%
GATCAAAACGTAAATCAAGG+AGG + chr1_3:7325836-7325855 Msa0100880:CDS 35.0%
!! GACATTGAGATTTTGTTGTG+TGG + chr1_3:7326165-7326184 Msa0100880:intron 35.0%
AACGATAATTCTAACGGCAA+AGG + chr1_3:7326237-7326256 Msa0100880:CDS 35.0%
!!! ATTTTAGGAATTGGCTTGGT+TGG - chr1_3:7326411-7326430 None:intergenic 35.0%
! TAGATGTTGTTGGGGTTTTT+GGG + chr1_3:7326437-7326456 Msa0100880:intron 35.0%
ATGTAAAACGACAATGGTCT+AGG - chr1_3:7326491-7326510 None:intergenic 35.0%
TATAATCAAGAGAGGATGCA+AGG - chr1_3:7326597-7326616 None:intergenic 35.0%
CCACAAAGTATAATCAAGAG+AGG - chr1_3:7326605-7326624 None:intergenic 35.0%
CCTCTCTTGATTATACTTTG+TGG + chr1_3:7326602-7326621 Msa0100880:intron 35.0%
!! CAATTCTAAGGCAAACAAGA+TGG - chr1_3:7326674-7326693 None:intergenic 35.0%
! CATCTTGTTTGCCTTAGAAT+TGG + chr1_3:7326672-7326691 Msa0100880:intron 35.0%
GCTCACATGACAAACAAAAA+AGG - chr1_3:7326746-7326765 None:intergenic 35.0%
ATTGTTCAGCCTTTGTTCTT+CGG + chr1_3:7326827-7326846 Msa0100880:intron 35.0%
TAACTCTTTCTCCAAAACTG+AGG - chr1_3:7326907-7326926 None:intergenic 35.0%
! CTCTTTTTATGATTCAGTGG+AGG - chr1_3:7326930-7326949 None:intergenic 35.0%
CTCCACTGAATCATAAAAAG+AGG + chr1_3:7326928-7326947 Msa0100880:CDS 35.0%
! TCCCTCTTTTTATGATTCAG+TGG - chr1_3:7326933-7326952 None:intergenic 35.0%
ACTGAATCATAAAAAGAGGG+AGG + chr1_3:7326932-7326951 Msa0100880:CDS 35.0%
CTGAATCATAAAAAGAGGGA+GGG + chr1_3:7326933-7326952 Msa0100880:CDS 35.0%
TGAATCATAAAAAGAGGGAG+GGG + chr1_3:7326934-7326953 Msa0100880:CDS 35.0%
! AAAGTAGACCTAGATTTTCC+TGG - chr1_3:7327083-7327102 None:intergenic 35.0%
AATACCAGATCTGGAAGAAA+TGG - chr1_3:7327142-7327161 None:intergenic 35.0%
AATACTCATACTCTTGCTCA+CGG - chr1_3:7327212-7327231 None:intergenic 35.0%
! GAATGTGTGTTGTTCTCATA+GGG - chr1_3:7327435-7327454 None:intergenic 35.0%
! TGAATGTGTGTTGTTCTCAT+AGG - chr1_3:7327436-7327455 None:intergenic 35.0%
TAATGCTTCTCAAAGGAACT+CGG - chr1_3:7327666-7327685 None:intergenic 35.0%
TTCACCAAAACGTATCAGAA+GGG + chr1_3:7327810-7327829 Msa0100880:CDS 35.0%
GCTACTTAATTTACCTGTCA+CGG - chr1_3:7327927-7327946 None:intergenic 35.0%
TCAGATATTCAGGATACAGA+AGG + chr1_3:7328037-7328056 Msa0100880:intron 35.0%
!! ATTCATCGTTGAGGCATTTT+TGG + chr1_3:7328194-7328213 Msa0100880:intron 35.0%
CATTATTATTCAGTGGCATG+GGG - chr1_3:7328240-7328259 None:intergenic 35.0%
TAAGCAAAGATAACAGGTCA+AGG + chr1_3:7328518-7328537 Msa0100880:CDS 35.0%
!! TAAAGGTGAAGTACCGAATT+CGG + chr1_3:7328610-7328629 Msa0100880:exon 35.0%
! ATCCTCGTAGTAAGTTGAAA+TGG + chr1_3:7328764-7328783 Msa0100880:three_prime_UTR 35.0%
ACTACAAGACACTGATAACT+GGG - chr1_3:7328907-7328926 None:intergenic 35.0%
TACTACAAGACACTGATAAC+TGG - chr1_3:7328908-7328927 None:intergenic 35.0%
GAGTTTAACTGATGGAGATT+TGG + chr1_3:7328936-7328955 Msa0100880:three_prime_UTR 35.0%
TCATGCTAACCATAAAGGAT+AGG - chr1_3:7328962-7328981 None:intergenic 35.0%
TGTGTCTGGAAGTTTATGTA+TGG + chr1_3:7329053-7329072 Msa0100880:three_prime_UTR 35.0%
TCTGGAAGTTTATGTATGGA+TGG + chr1_3:7329057-7329076 Msa0100880:three_prime_UTR 35.0%
CTGGAAGTTTATGTATGGAT+GGG + chr1_3:7329058-7329077 Msa0100880:three_prime_UTR 35.0%
! TCTCTTCTCTTTTGTGGTTC+AGG + chr1_3:7321341-7321360 Msa0100880:five_prime_UTR 40.0%
AAAACCTAAAACCCTAGCTG+AGG - chr1_3:7321442-7321461 None:intergenic 40.0%
GGCATAAGCGCTTATGAATA+AGG + chr1_3:7321759-7321778 Msa0100880:intron 40.0%
ACTGAGAGAGAGAATTCATG+TGG + chr1_3:7322313-7322332 Msa0100880:intron 40.0%
CTGAGAGAGAGAATTCATGT+GGG + chr1_3:7322314-7322333 Msa0100880:intron 40.0%
TGAGAGAGAGAATTCATGTG+GGG + chr1_3:7322315-7322334 Msa0100880:intron 40.0%
CCTTACCGAAACAAGATAAC+AGG - chr1_3:7322652-7322671 None:intergenic 40.0%
! CCTGTTATCTTGTTTCGGTA+AGG + chr1_3:7322649-7322668 Msa0100880:intron 40.0%
!! TATTAGCTTGATAGTGCAGC+TGG + chr1_3:7322736-7322755 Msa0100880:intron 40.0%
! AGCTGGATTGTTCAGTTTTG+TGG + chr1_3:7322753-7322772 Msa0100880:intron 40.0%
GAAAAACCCCATGGTGTTTA+TGG + chr1_3:7322929-7322948 Msa0100880:CDS 40.0%
TTTATGGACGTGTCTGTAGA+CGG + chr1_3:7322945-7322964 Msa0100880:CDS 40.0%
AACATCGTAGAAAAGCTGAG+AGG - chr1_3:7323068-7323087 None:intergenic 40.0%
! AATTTTCGTGCACTGTGTAC+CGG + chr1_3:7323106-7323125 Msa0100880:CDS 40.0%
GATGATGTGTGGAAGGAAAA+AGG - chr1_3:7323189-7323208 None:intergenic 40.0%
! TAAGCAATGGTGATGATGTG+TGG - chr1_3:7323200-7323219 None:intergenic 40.0%
!! AATGTGTCATTTCCCCTTTC+AGG + chr1_3:7323333-7323352 Msa0100880:intron 40.0%
TTTCCCCTTTCAGGAGAAAA+AGG + chr1_3:7323342-7323361 Msa0100880:intron 40.0%
! ACTCCTTTTTCTCCTGAAAG+GGG - chr1_3:7323348-7323367 None:intergenic 40.0%
! GACTCCTTTTTCTCCTGAAA+GGG - chr1_3:7323349-7323368 None:intergenic 40.0%
! TGACTCCTTTTTCTCCTGAA+AGG - chr1_3:7323350-7323369 None:intergenic 40.0%
AAAGGAGTCAGTCCTAATAC+TGG + chr1_3:7323360-7323379 Msa0100880:CDS 40.0%
TGGAAAATCACTGCACTACA+AGG + chr1_3:7323380-7323399 Msa0100880:CDS 40.0%
GGAAAATCACTGCACTACAA+GGG + chr1_3:7323381-7323400 Msa0100880:CDS 40.0%
CGTAAAAGGCTCCATTGTTA+AGG + chr1_3:7323422-7323441 Msa0100880:CDS 40.0%
TCCATTTGCTTGGTACAGAT+TGG + chr1_3:7323951-7323970 Msa0100880:intron 40.0%
ACCAATCTGTACCAAGCAAA+TGG - chr1_3:7323955-7323974 None:intergenic 40.0%
!! CAGATTGGTCTGTCATTTAG+TGG + chr1_3:7323966-7323985 Msa0100880:intron 40.0%
!! GATTGGTCTGTCATTTAGTG+GGG + chr1_3:7323968-7323987 Msa0100880:intron 40.0%
GATAAAAGCCAATGTTGGCA+TGG - chr1_3:7324076-7324095 None:intergenic 40.0%
ACAAGCTAAAGAAGAAGAGC+AGG - chr1_3:7324117-7324136 None:intergenic 40.0%
TTTCATGAAACCTCATCGAC+AGG + chr1_3:7324258-7324277 Msa0100880:intron 40.0%
ATACAACACATGCTGCATTC+GGG - chr1_3:7324307-7324326 None:intergenic 40.0%
CATACAACACATGCTGCATT+CGG - chr1_3:7324308-7324327 None:intergenic 40.0%
GCAACTTAGCATTCTAACCT+GGG - chr1_3:7324402-7324421 None:intergenic 40.0%
AGCAACTTAGCATTCTAACC+TGG - chr1_3:7324403-7324422 None:intergenic 40.0%
!! CTTGAACTTTTTCTCCAGCT+TGG + chr1_3:7324425-7324444 Msa0100880:intron 40.0%
TAACTCAAAAGAACCCAAGC+TGG - chr1_3:7324442-7324461 None:intergenic 40.0%
! CCTCTGAAAAAATAGGTCAG+AGG - chr1_3:7324498-7324517 None:intergenic 40.0%
!!! CCTCTGACCTATTTTTTCAG+AGG + chr1_3:7324495-7324514 Msa0100880:intron 40.0%
! GGAGACTCCTCTGAAAAAAT+AGG - chr1_3:7324505-7324524 None:intergenic 40.0%
!!! TTTTTTCAGAGGAGTCTCCT+AGG + chr1_3:7324506-7324525 Msa0100880:intron 40.0%
AAGCTGATCACCATCTTGAT+AGG + chr1_3:7324611-7324630 Msa0100880:CDS 40.0%
!! TTTAGTACTTTGGGACCGTT+TGG + chr1_3:7324668-7324687 Msa0100880:intron 40.0%
AAAGCTAGAAACAGCTTAGG+AGG + chr1_3:7324849-7324868 Msa0100880:intron 40.0%
!! TGCAATGTGCCTTGTTTAAC+AGG + chr1_3:7325002-7325021 Msa0100880:intron 40.0%
CTTGCTCATGTGTTCAGTTA+TGG + chr1_3:7325149-7325168 Msa0100880:intron 40.0%
TGCTCATGTGTTCAGTTATG+GGG + chr1_3:7325151-7325170 Msa0100880:intron 40.0%
!! TTTTTGGCAAGCTGTTGCAA+GGG + chr1_3:7325196-7325215 Msa0100880:CDS 40.0%
GAAGATGTAGGCAATGAAGA+AGG + chr1_3:7325240-7325259 Msa0100880:CDS 40.0%
!! GGTATTCCTTAAATGGGCTA+AGG - chr1_3:7325325-7325344 None:intergenic 40.0%
CTCATATGAAGGGAAGAACT+CGG - chr1_3:7325346-7325365 None:intergenic 40.0%
TGAACTTGTGTAAGATGACG+AGG - chr1_3:7325707-7325726 None:intergenic 40.0%
CAAGTTCATCTAGTGATGAC+AGG + chr1_3:7325719-7325738 Msa0100880:CDS 40.0%
GGAGGAAAAGAAAGAGATCT+AGG + chr1_3:7325743-7325762 Msa0100880:CDS 40.0%
GAGATAAACGTCGAGAAAAG+AGG + chr1_3:7325794-7325813 Msa0100880:CDS 40.0%
ATGTGCTCTCATATAGGTTG+TGG + chr1_3:7325953-7325972 Msa0100880:intron 40.0%
TGCAGTTAAACTCGTATGGT+AGG - chr1_3:7326065-7326084 None:intergenic 40.0%
TGGATGCAGTTAAACTCGTA+TGG - chr1_3:7326069-7326088 None:intergenic 40.0%
!! AGATTTTGTTGTGTGGTGTC+AGG + chr1_3:7326172-7326191 Msa0100880:intron 40.0%
!! GATTTTGTTGTGTGGTGTCA+GGG + chr1_3:7326173-7326192 Msa0100880:intron 40.0%
! CTAGATGTTGTTGGGGTTTT+TGG + chr1_3:7326436-7326455 Msa0100880:intron 40.0%
! AGATGTTGTTGGGGTTTTTG+GGG + chr1_3:7326438-7326457 Msa0100880:intron 40.0%
ATGTAAATGTAATCGTGGCC+TGG + chr1_3:7326509-7326528 Msa0100880:intron 40.0%
TAATCGTGGCCTGGAAAATA+AGG + chr1_3:7326518-7326537 Msa0100880:intron 40.0%
!!! CCTAGATTGCCTTATTTTCC+AGG - chr1_3:7326530-7326549 None:intergenic 40.0%
CCTGGAAAATAAGGCAATCT+AGG + chr1_3:7326527-7326546 Msa0100880:intron 40.0%
! CTTTCTATTGGCTGTTAGCT+AGG + chr1_3:7326641-7326660 Msa0100880:intron 40.0%
GAATCATAAAAAGAGGGAGG+GGG + chr1_3:7326935-7326954 Msa0100880:CDS 40.0%
ACTTCTGTCAGGTCTATAGT+TGG - chr1_3:7327027-7327046 None:intergenic 40.0%
! TAACAGAGGTGTGACAAGAT+TGG - chr1_3:7327106-7327125 None:intergenic 40.0%
CTTACCATTTCTTCCAGATC+TGG + chr1_3:7327135-7327154 Msa0100880:intron 40.0%
GTCCTGTTAGAAGAATAAGC+AGG + chr1_3:7327344-7327363 Msa0100880:CDS 40.0%
CTCCTGCTTATTCTTCTAAC+AGG - chr1_3:7327349-7327368 None:intergenic 40.0%
TTGCTAAGACTTCTACGATC+GGG - chr1_3:7327490-7327509 None:intergenic 40.0%
CTTGCTAAGACTTCTACGAT+CGG - chr1_3:7327491-7327510 None:intergenic 40.0%
TTTGAGAAACAGATCTGGCA+GGG - chr1_3:7327516-7327535 None:intergenic 40.0%
ATACTCTAGCAGAACTCCTA+CGG - chr1_3:7327540-7327559 None:intergenic 40.0%
CTCTTTCTTGACACTCTTAC+AGG - chr1_3:7327589-7327608 None:intergenic 40.0%
! TGTCAAGAAAGAGCATAAGC+AGG + chr1_3:7327596-7327615 Msa0100880:CDS 40.0%
!! ATACGTTTTGGTGAAGCATC+GGG - chr1_3:7327805-7327824 None:intergenic 40.0%
!! GATACGTTTTGGTGAAGCAT+CGG - chr1_3:7327806-7327825 None:intergenic 40.0%
CTTCACCAAAACGTATCAGA+AGG + chr1_3:7327809-7327828 Msa0100880:CDS 40.0%
TCACCAAAACGTATCAGAAG+GGG + chr1_3:7327811-7327830 Msa0100880:CDS 40.0%
GGTCATTCCTTCCATTATAG+CGG - chr1_3:7327906-7327925 None:intergenic 40.0%
CAGGTAAATTAAGTAGCACG+TGG + chr1_3:7327930-7327949 Msa0100880:intron 40.0%
CTTTCTGCTCTCAGATATTC+AGG + chr1_3:7328027-7328046 Msa0100880:intron 40.0%
TGGGGATTTGAATACTAGGT+AGG - chr1_3:7328222-7328241 None:intergenic 40.0%
CAGTATGCAGTCTAAACAAC+AGG - chr1_3:7328274-7328293 None:intergenic 40.0%
GTAAGCCTATATGTAGGTAC+CGG + chr1_3:7328311-7328330 Msa0100880:intron 40.0%
AACCATTTCCATAAGAGACC+AGG - chr1_3:7328576-7328595 None:intergenic 40.0%
GTTCTCCTGATTCAAGCTAA+AGG + chr1_3:7328593-7328612 Msa0100880:CDS 40.0%
!! CTTCACCTTTAGCTTGAATC+AGG - chr1_3:7328601-7328620 None:intergenic 40.0%
AAACCTCACCTTAAATGAGC+TGG + chr1_3:7328644-7328663 Msa0100880:three_prime_UTR 40.0%
CAAAGCTTCCAGCTCATTTA+AGG - chr1_3:7328655-7328674 None:intergenic 40.0%
AGTAACTAATTCCAGCAAGC+AGG - chr1_3:7328705-7328724 None:intergenic 40.0%
! TGCCATTTCAACTTACTACG+AGG - chr1_3:7328769-7328788 None:intergenic 40.0%
TGATAACTGGGGATATGGAT+GGG - chr1_3:7328895-7328914 None:intergenic 40.0%
CTACAAGACACTGATAACTG+GGG - chr1_3:7328906-7328925 None:intergenic 40.0%
GAGATTTGGCCTATCCTTTA+TGG + chr1_3:7328950-7328969 Msa0100880:three_prime_UTR 40.0%
CACACATCTATATGGGTCAT+AGG - chr1_3:7328993-7329012 None:intergenic 40.0%
!! GTATTTTAGAAGCGTGAGGT+TGG - chr1_3:7329027-7329046 None:intergenic 40.0%
!! AACGGTATTTTAGAAGCGTG+AGG - chr1_3:7329031-7329050 None:intergenic 40.0%
TAAAATACCGTTCGTGTGTC+TGG + chr1_3:7329039-7329058 Msa0100880:three_prime_UTR 40.0%
TAAACTTCCAGACACACGAA+CGG - chr1_3:7329049-7329068 None:intergenic 40.0%
!!! AGGTTTTGTCGTTTTCCGCA+CGG + chr1_3:7321401-7321420 Msa0100880:intron 45.0%
TTGCGTTTCATCCTCAGCTA+GGG + chr1_3:7321428-7321447 Msa0100880:intron 45.0%
! TCATCCTCAGCTAGGGTTTT+AGG + chr1_3:7321435-7321454 Msa0100880:intron 45.0%
TTCACTCGATTTCGCTGATC+TGG + chr1_3:7321530-7321549 Msa0100880:intron 45.0%
!! CATAACGGGCCTGTTTGAAT+TGG - chr1_3:7322163-7322182 None:intergenic 45.0%
CAATAAGGGCCTGTTTGGAT+TGG - chr1_3:7322258-7322277 None:intergenic 45.0%
! TAACTGACTCATGGCCAGTT+AGG + chr1_3:7322429-7322448 Msa0100880:intron 45.0%
! CTAACAGCCTTGTACCTAAC+TGG - chr1_3:7322446-7322465 None:intergenic 45.0%
GTTAGGTACAAGGCTGTTAG+AGG + chr1_3:7322446-7322465 Msa0100880:intron 45.0%
GGCAAAGAAGAAAAACCCCA+TGG + chr1_3:7322920-7322939 Msa0100880:CDS 45.0%
ACACGTCCATAAACACCATG+GGG - chr1_3:7322938-7322957 None:intergenic 45.0%
GACACGTCCATAAACACCAT+GGG - chr1_3:7322939-7322958 None:intergenic 45.0%
AGACACGTCCATAAACACCA+TGG - chr1_3:7322940-7322959 None:intergenic 45.0%
TTATGGACGTGTCTGTAGAC+GGG + chr1_3:7322946-7322965 Msa0100880:CDS 45.0%
CGGGGATCCTTATGAAAGAA+TGG + chr1_3:7322965-7322984 Msa0100880:CDS 45.0%
! CAATGGTGATGATGTGTGGA+AGG - chr1_3:7323196-7323215 None:intergenic 45.0%
! TGGAGCCTTTTACGATCTGA+TGG - chr1_3:7323416-7323435 None:intergenic 45.0%
GGTTGAAAATGGCTTAGCAG+TGG + chr1_3:7323523-7323542 Msa0100880:intron 45.0%
!!! TGGTTTGGTTTGCCTTTTGC+AGG + chr1_3:7323729-7323748 Msa0100880:intron 45.0%
!!! GGTTTGGTTTGCCTTTTGCA+GGG + chr1_3:7323730-7323749 Msa0100880:intron 45.0%
TAAAGTCTCCACCCTGCAAA+AGG - chr1_3:7323744-7323763 None:intergenic 45.0%
ATATGTGATGCCTGTCGATG+AGG - chr1_3:7324271-7324290 None:intergenic 45.0%
CATTCTAACCTGGGAACTTG+GGG - chr1_3:7324393-7324412 None:intergenic 45.0%
GCATTCTAACCTGGGAACTT+GGG - chr1_3:7324394-7324413 None:intergenic 45.0%
AGCATTCTAACCTGGGAACT+TGG - chr1_3:7324395-7324414 None:intergenic 45.0%
GGAGAATCATGCTTTAGCCT+AGG - chr1_3:7324526-7324545 None:intergenic 45.0%
AGGCTAAAGCATGATTCTCC+AGG + chr1_3:7324526-7324545 Msa0100880:CDS 45.0%
TTCTCCAGGCCTTCTATCTA+TGG + chr1_3:7324540-7324559 Msa0100880:CDS 45.0%
CAGCAATCGCCATAGATAGA+AGG - chr1_3:7324552-7324571 None:intergenic 45.0%
ATTGCTGATCGTGACACTCT+TGG + chr1_3:7324565-7324584 Msa0100880:CDS 45.0%
AAGGCACATTGCATCAAGTG+TGG - chr1_3:7324995-7325014 None:intergenic 45.0%
GTGAACAGAGTAAGGTCATC+TGG - chr1_3:7325058-7325077 None:intergenic 45.0%
!! CAGTTATGGGGTCATTTTGC+AGG + chr1_3:7325163-7325182 Msa0100880:intron 45.0%
!! GTCATTTTGCAGGAAGCATG+TGG + chr1_3:7325173-7325192 Msa0100880:intron 45.0%
!! TGCAGGAAGCATGTGGTTTT+TGG + chr1_3:7325180-7325199 Msa0100880:intron 45.0%
!!! GTTTTTGGCAAGCTGTTGCA+AGG + chr1_3:7325195-7325214 Msa0100880:CDS 45.0%
TAGTCATGAAGTGCGGAGAA+AGG + chr1_3:7325555-7325574 Msa0100880:CDS 45.0%
AGTCATGAAGTGCGGAGAAA+GGG + chr1_3:7325556-7325575 Msa0100880:CDS 45.0%
TAGTTCCTCAGATTCCGACA+TGG + chr1_3:7325642-7325661 Msa0100880:CDS 45.0%
AGATTCCATGTCGGAATCTG+AGG - chr1_3:7325650-7325669 None:intergenic 45.0%
GTTCATCTAGTGATGACAGG+CGG + chr1_3:7325722-7325741 Msa0100880:CDS 45.0%
!! GATGTTGTTGGGGTTTTTGG+GGG + chr1_3:7326439-7326458 Msa0100880:intron 45.0%
!! ATGTTGTTGGGGTTTTTGGG+GGG + chr1_3:7326440-7326459 Msa0100880:intron 45.0%
CACATGCTACCGAAGAACAA+AGG - chr1_3:7326839-7326858 None:intergenic 45.0%
! AGTCCAGTCATCCTCAGTTT+TGG + chr1_3:7326893-7326912 Msa0100880:CDS 45.0%
TCTCCAAAACTGAGGATGAC+TGG - chr1_3:7326899-7326918 None:intergenic 45.0%
! GCTGCGCTCCATTTTCTTTT+GGG - chr1_3:7326986-7327005 None:intergenic 45.0%
GACCTGACAGAAGTGAAGAA+AGG + chr1_3:7327033-7327052 Msa0100880:CDS 45.0%
TGCCTTTCTTCACTTCTGTC+AGG - chr1_3:7327038-7327057 None:intergenic 45.0%
!! GACGTGATGGATGATAATCC+AGG + chr1_3:7327062-7327081 Msa0100880:CDS 45.0%
TCCTCTTTGGACTAATGCTC+GGG - chr1_3:7327258-7327277 None:intergenic 45.0%
CTCCTCTTTGGACTAATGCT+CGG - chr1_3:7327259-7327278 None:intergenic 45.0%
CTTCTGCTAAACCTCCTCTT+TGG - chr1_3:7327271-7327290 None:intergenic 45.0%
AGGTTTAGCAGAAGTCCAAG+TGG + chr1_3:7327277-7327296 Msa0100880:CDS 45.0%
! CGAGGACTTTTACTACCACT+TGG - chr1_3:7327295-7327314 None:intergenic 45.0%
! CTTTGAGAAACAGATCTGGC+AGG - chr1_3:7327517-7327536 None:intergenic 45.0%
!! ACGGCTTTGAGAAACAGATC+TGG - chr1_3:7327521-7327540 None:intergenic 45.0%
! GATCTGTTTCTCAAAGCCGT+AGG + chr1_3:7327521-7327540 Msa0100880:CDS 45.0%
CATCACGAAGAACAGTCAGT+AGG + chr1_3:7327560-7327579 Msa0100880:CDS 45.0%
CTTCTGGCAGATGATCTAAC+TGG - chr1_3:7327625-7327644 None:intergenic 45.0%
CTTCGGCTAATGCTTCTCAA+AGG - chr1_3:7327673-7327692 None:intergenic 45.0%
! CTTCCCCTTCTGATACGTTT+TGG - chr1_3:7327817-7327836 None:intergenic 45.0%
AAACGTATCAGAAGGGGAAG+AGG + chr1_3:7327817-7327836 Msa0100880:CDS 45.0%
!! TGAGGTACCGCTATAATGGA+AGG + chr1_3:7327896-7327915 Msa0100880:CDS 45.0%
GGCATGGGGATTTGAATACT+AGG - chr1_3:7328226-7328245 None:intergenic 45.0%
CTACTCCGGTACCTACATAT+AGG - chr1_3:7328319-7328338 None:intergenic 45.0%
!! CTATATGTAGGTACCGGAGT+AGG + chr1_3:7328317-7328336 Msa0100880:intron 45.0%
TAGTGATTCCACAGAAGACC+TGG - chr1_3:7328485-7328504 None:intergenic 45.0%
! TCTCCTTCTAGAAGCTCAGA+CGG + chr1_3:7328541-7328560 Msa0100880:CDS 45.0%
TTTCCGTCTGAGCTTCTAGA+AGG - chr1_3:7328547-7328566 None:intergenic 45.0%
AGAAGCTCAGACGGAAAGAA+AGG + chr1_3:7328550-7328569 Msa0100880:CDS 45.0%
AAGAAAGGCCTGGTCTCTTA+TGG + chr1_3:7328565-7328584 Msa0100880:CDS 45.0%
TACCGAATTCGGACCTTTCA+GGG + chr1_3:7328621-7328640 Msa0100880:three_prime_UTR 45.0%
TTCCCTGAAAGGTCCGAATT+CGG - chr1_3:7328626-7328645 None:intergenic 45.0%
TAAGGTGAGGTTTCCCTGAA+AGG - chr1_3:7328637-7328656 None:intergenic 45.0%
! CTTCCAGCTCATTTAAGGTG+AGG - chr1_3:7328650-7328669 None:intergenic 45.0%
ATACTGCTTTACCTGCTTGC+TGG + chr1_3:7328691-7328710 Msa0100880:three_prime_UTR 45.0%
GATAACTGGGGATATGGATG+GGG - chr1_3:7328894-7328913 None:intergenic 45.0%
CTGATAACTGGGGATATGGA+TGG - chr1_3:7328896-7328915 None:intergenic 45.0%
GACACTGATAACTGGGGATA+TGG - chr1_3:7328900-7328919 None:intergenic 45.0%
!! ATGAAACGCAAGGTACCGTG+CGG - chr1_3:7321419-7321438 None:intergenic 50.0%
CTAGCTGAGGATGAAACGCA+AGG - chr1_3:7321429-7321448 None:intergenic 50.0%
CTTGCGTTTCATCCTCAGCT+AGG + chr1_3:7321427-7321446 Msa0100880:intron 50.0%
CTCATGGCCAGTTAGGTACA+AGG + chr1_3:7322436-7322455 Msa0100880:intron 50.0%
TATGGACGTGTCTGTAGACG+GGG + chr1_3:7322947-7322966 Msa0100880:CDS 50.0%
TCTGTAGGATACAGGGCTGA+TGG + chr1_3:7323576-7323595 Msa0100880:intron 50.0%
!!! TTGGTTTGCCTTTTGCAGGG+TGG + chr1_3:7323733-7323752 Msa0100880:intron 50.0%
CCAGTCCCTACAAAACACGT+AGG - chr1_3:7324355-7324374 None:intergenic 50.0%
! CCTACGTGTTTTGTAGGGAC+TGG + chr1_3:7324352-7324371 Msa0100880:intron 50.0%
! ACGTGTTTTGTAGGGACTGG+TGG + chr1_3:7324355-7324374 Msa0100880:intron 50.0%
AGCATATACCCCAAGTTCCC+AGG + chr1_3:7324382-7324401 Msa0100880:CDS 50.0%
ATCGCCATAGATAGAAGGCC+TGG - chr1_3:7324547-7324566 None:intergenic 50.0%
!! ACTTTGGGACCGTTTGGATG+AGG + chr1_3:7324674-7324693 Msa0100880:intron 50.0%
AACGTCGAGAAAAGAGGCGA+AGG + chr1_3:7325800-7325819 Msa0100880:CDS 50.0%
! TTGTGTGGTGTCAGGGAATC+AGG + chr1_3:7326180-7326199 Msa0100880:intron 50.0%
TCATAAAAAGAGGGAGGGGG+TGG + chr1_3:7326938-7326957 Msa0100880:CDS 50.0%
CATAAAAAGAGGGAGGGGGT+GGG + chr1_3:7326939-7326958 Msa0100880:CDS 50.0%
! GGCTGCGCTCCATTTTCTTT+TGG - chr1_3:7326987-7327006 None:intergenic 50.0%
AGAAAGGCAGCATGACGTGA+TGG + chr1_3:7327049-7327068 Msa0100880:CDS 50.0%
! CTCTTGCTCACGGTTTGCTT+AGG - chr1_3:7327202-7327221 None:intergenic 50.0%
! GGGCTTTTGCACACACACTT+GGG - chr1_3:7327238-7327257 None:intergenic 50.0%
CGAGCATTAGTCCAAAGAGG+AGG + chr1_3:7327257-7327276 Msa0100880:CDS 50.0%
AAAGTCCTCGTGCTCTATCG+CGG + chr1_3:7327305-7327324 Msa0100880:CDS 50.0%
TACGATCGGGACTTCTCACA+GGG - chr1_3:7327477-7327496 None:intergenic 50.0%
AGAAGTCTCAGCAGGAGTTC+CGG + chr1_3:7327640-7327659 Msa0100880:CDS 50.0%
TTGCCACTCTGACAGGACTT+CGG - chr1_3:7327690-7327709 None:intergenic 50.0%
TACGACTCCTGGAATAGCTG+CGG - chr1_3:7327726-7327745 None:intergenic 50.0%
! GAAGGTATAGAACCCCCTCT+CGG + chr1_3:7327866-7327885 Msa0100880:CDS 50.0%
CCATTATAGCGGTACCTCAC+AGG - chr1_3:7327895-7327914 None:intergenic 50.0%
!! CCTGTGAGGTACCGCTATAA+TGG + chr1_3:7327892-7327911 Msa0100880:CDS 50.0%
ATGGAAGGAATGACCGTGAC+AGG + chr1_3:7327911-7327930 Msa0100880:CDS 50.0%
!! GATACAGAAGGTACTCCCCT+AGG + chr1_3:7328049-7328068 Msa0100880:CDS 50.0%
! GGTGGGCTTCGTGATATAGA+CGG - chr1_3:7328355-7328374 None:intergenic 50.0%
CTATACCTTCGTGCTCGGTA+AGG - chr1_3:7328376-7328395 None:intergenic 50.0%
TTGGGCTATACCTTCGTGCT+CGG - chr1_3:7328381-7328400 None:intergenic 50.0%
TATTCACACGAGGAGGTGAG+CGG - chr1_3:7328423-7328442 None:intergenic 50.0%
ACAGAAGACCTGGATCGAGA+TGG - chr1_3:7328475-7328494 None:intergenic 50.0%
ATCTCGATCCAGGTCTTCTG+TGG + chr1_3:7328474-7328493 Msa0100880:CDS 50.0%
GGCCTGGTCTCTTATGGAAA+TGG + chr1_3:7328571-7328590 Msa0100880:CDS 50.0%
GTACCGAATTCGGACCTTTC+AGG + chr1_3:7328620-7328639 Msa0100880:three_prime_UTR 50.0%
TCGATATTTGCTCGGACGTG+TGG + chr1_3:7328860-7328879 Msa0100880:three_prime_UTR 50.0%
CGATATTTGCTCGGACGTGT+GGG + chr1_3:7328861-7328880 Msa0100880:three_prime_UTR 50.0%
CATCTAGTGATGACAGGCGG+AGG + chr1_3:7325725-7325744 Msa0100880:CDS 55.0%
GAGGATGACTGGACTTCAGC+TGG - chr1_3:7326888-7326907 None:intergenic 55.0%
AATGGAGCGCAGCCTAGCAA+CGG + chr1_3:7326993-7327012 Msa0100880:CDS 55.0%
!! TTGGCCTTGATGCCGTTGCT+AGG - chr1_3:7327008-7327027 None:intergenic 55.0%
! CGGGCTTTTGCACACACACT+TGG - chr1_3:7327239-7327258 None:intergenic 55.0%
GCCCGAGCATTAGTCCAAAG+AGG + chr1_3:7327254-7327273 Msa0100880:CDS 55.0%
TATCGCGGAGGAGTTTGAGC+AGG + chr1_3:7327320-7327339 Msa0100880:CDS 55.0%
CTACGATCGGGACTTCTCAC+AGG - chr1_3:7327478-7327497 None:intergenic 55.0%
CATCTGCCAGAAGTCTCAGC+AGG + chr1_3:7327632-7327651 Msa0100880:CDS 55.0%
GGAACTCCTGCTGAGACTTC+TGG - chr1_3:7327641-7327660 None:intergenic 55.0%
GCTTCTCAAAGGAACTCGGC+CGG - chr1_3:7327662-7327681 None:intergenic 55.0%
TAGCCGAAGTCCTGTCAGAG+TGG + chr1_3:7327684-7327703 Msa0100880:CDS 55.0%
GCAATCACCGCAGCTATTCC+AGG + chr1_3:7327716-7327735 Msa0100880:CDS 55.0%
GAGTCGTAGCCCTGTTCGTA+GGG + chr1_3:7327738-7327757 Msa0100880:CDS 55.0%
GTGTCCTTGCCCTACGAACA+GGG - chr1_3:7327750-7327769 None:intergenic 55.0%
TACCTCACAGGAGACCGAGA+GGG - chr1_3:7327883-7327902 None:intergenic 55.0%
! GGTACTCCCCTAGGCGTTTT+AGG + chr1_3:7328058-7328077 Msa0100880:CDS 55.0%
TGGGCTCCTAAAACGCCTAG+GGG - chr1_3:7328067-7328086 None:intergenic 55.0%
GTGGGCTCCTAAAACGCCTA+GGG - chr1_3:7328068-7328087 None:intergenic 55.0%
CTTGGTGGAGTTCTTCTCCG+TGG - chr1_3:7328093-7328112 None:intergenic 55.0%
CACGGAGAAGAACTCCACCA+AGG + chr1_3:7328091-7328110 Msa0100880:CDS 55.0%
GTGTCCTGCTTCTCCTACTC+CGG - chr1_3:7328333-7328352 None:intergenic 55.0%
ACCTTCGTGCTCGGTAAGGT+GGG - chr1_3:7328372-7328391 None:intergenic 55.0%
TACCTTCGTGCTCGGTAAGG+TGG - chr1_3:7328373-7328392 None:intergenic 55.0%
! TGCGAATTGGGCTAGGGCTT+GGG - chr1_3:7328399-7328418 None:intergenic 55.0%
! TTGCGAATTGGGCTAGGGCT+TGG - chr1_3:7328400-7328419 None:intergenic 55.0%
AGCGGTTGCGAATTGGGCTA+GGG - chr1_3:7328405-7328424 None:intergenic 55.0%
GAGGTGAGCGGTTGCGAATT+GGG - chr1_3:7328411-7328430 None:intergenic 55.0%
GCTCACCTCCTCGTGTGAAT+AGG + chr1_3:7328422-7328441 Msa0100880:CDS 55.0%
! TCGAGATGGACTCCTGCTGA+GGG - chr1_3:7328461-7328480 None:intergenic 55.0%
! ATCGAGATGGACTCCTGCTG+AGG - chr1_3:7328462-7328481 None:intergenic 55.0%
CTCAGACGGAAAGAAAGGCC+TGG + chr1_3:7328555-7328574 Msa0100880:CDS 55.0%
!! TGGGGTTTTTGGGGGGTTCC+AGG + chr1_3:7326447-7326466 Msa0100880:intron 60.0%
GCAGCCTAGCAACGGCATCA+AGG + chr1_3:7327001-7327020 Msa0100880:CDS 60.0%
TCAGCAGAAGCCCCGTGAGA+GGG + chr1_3:7327383-7327402 Msa0100880:CDS 60.0%
TCTCCCCTTCCTCCCTCTCA+CGG - chr1_3:7327398-7327417 None:intergenic 60.0%
CCTCTGCTTGCCACTCTGAC+AGG - chr1_3:7327697-7327716 None:intergenic 60.0%
CCTGTCAGAGTGGCAAGCAG+AGG + chr1_3:7327694-7327713 Msa0100880:CDS 60.0%
ACGAACAGGGCTACGACTCC+TGG - chr1_3:7327737-7327756 None:intergenic 60.0%
GGAGTCGTAGCCCTGTTCGT+AGG + chr1_3:7327737-7327756 Msa0100880:CDS 60.0%
GTAGCCCTGTTCGTAGGGCA+AGG + chr1_3:7327743-7327762 Msa0100880:CDS 60.0%
GGTGTCCTTGCCCTACGAAC+AGG - chr1_3:7327751-7327770 None:intergenic 60.0%
GTAGGGCAAGGACACCTCGT+GGG + chr1_3:7327755-7327774 Msa0100880:CDS 60.0%
TTCGACAGACTCCTCCCACG+AGG - chr1_3:7327772-7327791 None:intergenic 60.0%
ACCTCACAGGAGACCGAGAG+GGG - chr1_3:7327882-7327901 None:intergenic 60.0%
GTACCTCACAGGAGACCGAG+AGG - chr1_3:7327884-7327903 None:intergenic 60.0%
! GGTGGGCTCCTAAAACGCCT+AGG - chr1_3:7328069-7328088 None:intergenic 60.0%
!!! GTTTTAGGAGCCCACCGCCA+CGG + chr1_3:7328073-7328092 Msa0100880:CDS 60.0%
GAGTTCTTCTCCGTGGCGGT+GGG - chr1_3:7328086-7328105 None:intergenic 60.0%
GGTGGAGTTCTTCTCCGTGG+CGG - chr1_3:7328090-7328109 None:intergenic 60.0%
! GGTACCGGAGTAGGAGAAGC+AGG + chr1_3:7328326-7328345 Msa0100880:intron 60.0%
GAGCGGTTGCGAATTGGGCT+AGG - chr1_3:7328406-7328425 None:intergenic 60.0%
GGAGGTGAGCGGTTGCGAAT+TGG - chr1_3:7328412-7328431 None:intergenic 60.0%
GCACGCCTATTCACACGAGG+AGG - chr1_3:7328430-7328449 None:intergenic 60.0%
GACGCACGCCTATTCACACG+AGG - chr1_3:7328433-7328452 None:intergenic 60.0%
GTGCGTCATCATCCCTCAGC+AGG + chr1_3:7328446-7328465 Msa0100880:CDS 60.0%
GCAGGAGTCCATCTCGATCC+AGG + chr1_3:7328464-7328483 Msa0100880:CDS 60.0%
GTCCTCGTGCTCTATCGCGG+AGG + chr1_3:7327308-7327327 Msa0100880:CDS 65.0%
CTCCTCCGCGATAGAGCACG+AGG - chr1_3:7327313-7327332 None:intergenic 65.0%
GTCAGCAGAAGCCCCGTGAG+AGG + chr1_3:7327382-7327401 Msa0100880:CDS 65.0%
AAGCCCCGTGAGAGGGAGGA+AGG + chr1_3:7327390-7327409 Msa0100880:CDS 65.0%
AGCCCCGTGAGAGGGAGGAA+GGG + chr1_3:7327391-7327410 Msa0100880:CDS 65.0%
TCCCCTTCCTCCCTCTCACG+GGG - chr1_3:7327396-7327415 None:intergenic 65.0%
CTCCCCTTCCTCCCTCTCAC+GGG - chr1_3:7327397-7327416 None:intergenic 65.0%
CGTAGGGCAAGGACACCTCG+TGG + chr1_3:7327754-7327773 Msa0100880:CDS 65.0%
CCTCACAGGAGACCGAGAGG+GGG - chr1_3:7327881-7327900 None:intergenic 65.0%
GGAGTTCTTCTCCGTGGCGG+TGG - chr1_3:7328087-7328106 None:intergenic 65.0%
GCCCACCTTACCGAGCACGA+AGG + chr1_3:7328368-7328387 Msa0100880:CDS 65.0%
GGAGGGGGTGGGCATGCTAG+AGG + chr1_3:7326950-7326969 Msa0100880:CDS 70.0%
GGGGGTGGGCATGCTAGAGG+AGG + chr1_3:7326953-7326972 Msa0100880:CDS 70.0%
GCAGAAGCCCCGTGAGAGGG+AGG + chr1_3:7327386-7327405 Msa0100880:CDS 70.0%
GCCCCGTGAGAGGGAGGAAG+GGG + chr1_3:7327392-7327411 Msa0100880:CDS 70.0%
GGGCAAGGACACCTCGTGGG+AGG + chr1_3:7327758-7327777 Msa0100880:CDS 70.0%
CCCCCTCTCGGTCTCCTGTG+AGG + chr1_3:7327878-7327897 Msa0100880:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 7321279 7329127 7321279 ID=Msa0100880;Name=Msa0100880
chr1_3 mRNA 7321279 7329127 7321279 ID=Msa0100880-mRNA-1;Parent=Msa0100880;Name=Msa0100880-mRNA-1;_AED=0.10;_eAED=0.11;_QI=106|0.85|0.93|1|0.92|0.86|15|515|783
chr1_3 exon 7321279 7321362 7321279 ID=Msa0100880-mRNA-1:exon:2874;Parent=Msa0100880-mRNA-1
chr1_3 exon 7322896 7322995 7322896 ID=Msa0100880-mRNA-1:exon:2875;Parent=Msa0100880-mRNA-1
chr1_3 exon 7323073 7323127 7323073 ID=Msa0100880-mRNA-1:exon:2876;Parent=Msa0100880-mRNA-1
chr1_3 exon 7323355 7323443 7323355 ID=Msa0100880-mRNA-1:exon:2877;Parent=Msa0100880-mRNA-1
chr1_3 exon 7323583 7323615 7323583 ID=Msa0100880-mRNA-1:exon:2878;Parent=Msa0100880-mRNA-1
chr1_3 exon 7323751 7323775 7323751 ID=Msa0100880-mRNA-1:exon:2879;Parent=Msa0100880-mRNA-1
chr1_3 exon 7324368 7324403 7324368 ID=Msa0100880-mRNA-1:exon:2880;Parent=Msa0100880-mRNA-1
chr1_3 exon 7324515 7324632 7324515 ID=Msa0100880-mRNA-1:exon:2881;Parent=Msa0100880-mRNA-1
chr1_3 exon 7325185 7325312 7325185 ID=Msa0100880-mRNA-1:exon:2882;Parent=Msa0100880-mRNA-1
chr1_3 exon 7325500 7325857 7325500 ID=Msa0100880-mRNA-1:exon:2883;Parent=Msa0100880-mRNA-1
chr1_3 exon 7326194 7326312 7326194 ID=Msa0100880-mRNA-1:exon:2884;Parent=Msa0100880-mRNA-1
chr1_3 exon 7326889 7327093 7326889 ID=Msa0100880-mRNA-1:exon:2885;Parent=Msa0100880-mRNA-1
chr1_3 exon 7327183 7327932 7327183 ID=Msa0100880-mRNA-1:exon:2886;Parent=Msa0100880-mRNA-1
chr1_3 exon 7328041 7328112 7328041 ID=Msa0100880-mRNA-1:exon:2887;Parent=Msa0100880-mRNA-1
chr1_3 exon 7328327 7329127 7328327 ID=Msa0100880-mRNA-1:exon:2888;Parent=Msa0100880-mRNA-1
chr1_3 five_prime_UTR 7321279 7321362 7321279 ID=Msa0100880-mRNA-1:five_prime_utr;Parent=Msa0100880-mRNA-1
chr1_3 five_prime_UTR 7322896 7322917 7322896 ID=Msa0100880-mRNA-1:five_prime_utr;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7322918 7322995 7322918 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7323073 7323127 7323073 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7323355 7323443 7323355 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7323583 7323615 7323583 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7323751 7323775 7323751 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7324368 7324403 7324368 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7324515 7324632 7324515 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7325185 7325312 7325185 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7325500 7325857 7325500 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7326194 7326312 7326194 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7326889 7327093 7326889 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7327183 7327932 7327183 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7328041 7328112 7328041 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 CDS 7328327 7328612 7328327 ID=Msa0100880-mRNA-1:cds;Parent=Msa0100880-mRNA-1
chr1_3 three_prime_UTR 7328613 7329127 7328613 ID=Msa0100880-mRNA-1:three_prime_utr;Parent=Msa0100880-mRNA-1
Gene Sequence

>Msa0100880

ATGGCAAAGAAGAAAAACCCCATGGTGTTTATGGACGTGTCTGTAGACGGGGATCCTTATGAAAGAATGGTTTTTGAGCTTTTCTACGATGTTGCTCCAAAGACTGCTGAAAATTTTCGTGCACTGTGTACCGGAGAAAAAGGAGTCAGTCCTAATACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCAGATCGTAAAAGGCTCCATTGTTAAGGATACAGGGCTGATGGTCACAACTGCTTTTCTTGGTGGAGACTTTATCAATCGAAATGGGACTGGTGGAGAGAGCATATACCCCAAGTTCCCAGAGGAGTCTCCTAGGCTAAAGCATGATTCTCCAGGCCTTCTATCTATGGCGATTGCTGATCGTGACACTCTTGGTTCACATTTTATCATCACTTTGAAAGCTGATCACCATCTTGATAGGAAGCATGTGGTTTTTGGCAAGCTGTTGCAAGGGTATGATATATTGAAGAAAATTGAAGATGTAGGCAATGAAGAAGGACTCCCAGCCGTAACTGTCAAAATAATTAATTGTGGTGAACACAATGAGGATGGAAAGAAGACTCACAAGTCAAAAATTGGAAGGAATGGATCTTCTGAAGCAAATAGTCATGAAGTGCGGAGAAAGGGAAAGCATAAAAAATCTTCAGGAGACAGAAGGAAGAAGAGAAAACATTACTCATCAGAATCAGATAGTTCCTCAGATTCCGACATGGAATCTTCTGAAAGTGATAGTGACTCTGACTCAGATTTGTCCTCGTCATCTTACACAAGTTCATCTAGTGATGACAGGCGGAGGAAAAGAAAGAGATCTAGGAAAGATAAACATAGACATGGAAAAAGAAGAGATAAACGTCGAGAAAAGAGGCGAAGGAAACAAGATAAGAGATCAAAACGTAAATCAAGGAGGGAATCAGGCAGTCATTCTGATGCAGATAGTGCAAGTAAGAGTAACGATAATTCTAACGGCAAAGGTCTTGATACTCAAGAGAAAATTCTGAAGCAAAAAGATCATTCTCAGATAGATGCTGAAGTCCAGTCATCCTCAGTTTTGGAGAAAGAGTTACCTCCACTGAATCATAAAAAGAGGGAGGGGGTGGGCATGCTAGAGGAGGAAGAATTCCCAAAAGAAAATGGAGCGCAGCCTAGCAACGGCATCAAGGCCAACTATAGACCTGACAGAAGTGAAGAAAGGCAGCATGACGTGATGGATGATAATCCAGGAAAATCTAGGAGTCGAAGCATGAGTCCTAAGCAAACCGTGAGCAAGAGTATGAGTATTAGTCCCAAGTGTGTGTGCAAAAGCCCGAGCATTAGTCCAAAGAGGAGGTTTAGCAGAAGTCCAAGTGGTAGTAAAAGTCCTCGTGCTCTATCGCGGAGGAGTTTGAGCAGGAGTCCTGTTAGAAGAATAAGCAGGAGTCTAAACAGAAACGTCAGCAGAAGCCCCGTGAGAGGGAGGAAGGGGAGAAGTATCAGTAGAAGCCCTATGAGAACAACACACATTCATAGAAGTGTCAGCAAGAGCCCTGTGAGAAGTCCCGATCGTAGAAGTCTTAGCAAGAGCCCTGCCAGATCTGTTTCTCAAAGCCGTAGGAGTTCTGCTAGAGTATCATCACGAAGAACAGTCAGTAGGAGTCCTGTAAGAGTGTCAAGAAAGAGCATAAGCAGGAGTCCAGTTAGATCATCTGCCAGAAGTCTCAGCAGGAGTTCCGGCCGAGTTCCTTTGAGAAGCATTAGCCGAAGTCCTGTCAGAGTGGCAAGCAGAGGCAATCACCGCAGCTATTCCAGGAGTCGTAGCCCTGTTCGTAGGGCAAGGACACCTCGTGGGAGGAGTCTGTCGAAGAGTGTGTCACCCGATGCTTCACCAAAACGTATCAGAAGGGGAAGAGGTTTCAGTGAAAGATACTCTTATGCTAGAAGGTATAGAACCCCCTCTCGGTCTCCTGTGAGGTACCGCTATAATGGAAGGAATGACCGTGACAGATATTCAGGATACAGAAGGTACTCCCCTAGGCGTTTTAGGAGCCCACCGCCACGGAGAAGAACTCCACCAAGGTACCGGAGTAGGAGAAGCAGGACACCGTCTATATCACGAAGCCCACCTTACCGAGCACGAAGGTATAGCCCAAGCCCTAGCCCAATTCGCAACCGCTCACCTCCTCGTGTGAATAGGCGTGCGTCATCATCCCTCAGCAGGAGTCCATCTCGATCCAGGTCTTCTGTGGAATCACTATCTCCAAGAAAAGTAAGCAAAGATAACAGGTCAAGGTCTCCTTCTAGAAGCTCAGACGGAAAGAAAGGCCTGGTCTCTTATGGAAATGGTTCTCCTGATTCAAGCTAA
Protein sequence

>Msa0100880

MAKKKNPMVFMDVSVDGDPYERMVFELFYDVAPKTAENFRALCTGEKGVSPNTGKSLHYKGSFFHQIVKGSIVKDTGLMVTTAFLGGDFINRNGTGGESIYPKFPEESPRLKHDSPGLLSMAIADRDTLGSHFIITLKADHHLDRKHVVFGKLLQGYDILKKIEDVGNEEGLPAVTVKIINCGEHNEDGKKTHKSKIGRNGSSEANSHEVRRKGKHKKSSGDRRKKRKHYSSESDSSSDSDMESSESDSDSDSDLSSSSYTSSSSDDRRRKRKRSRKDKHRHGKRRDKRREKRRRKQDKRSKRKSRRESGSHSDADSASKSNDNSNGKGLDTQEKILKQKDHSQIDAEVQSSSVLEKELPPLNHKKREGVGMLEEEEFPKENGAQPSNGIKANYRPDRSEERQHDVMDDNPGKSRSRSMSPKQTVSKSMSISPKCVCKSPSISPKRRFSRSPSGSKSPRALSRRSLSRSPVRRISRSLNRNVSRSPVRGRKGRSISRSPMRTTHIHRSVSKSPVRSPDRRSLSKSPARSVSQSRRSSARVSSRRTVSRSPVRVSRKSISRSPVRSSARSLSRSSGRVPLRSISRSPVRVASRGNHRSYSRSRSPVRRARTPRGRSLSKSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRYRYNGRNDRDRYSGYRRYSPRRFRSPPPRRRTPPRYRSRRSRTPSISRSPPYRARRYSPSPSPIRNRSPPRVNRRASSSLSRSPSRSRSSVESLSPRKVSKDNRSRSPSRSSDGKKGLVSYGNGSPDSS*