AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0078660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078660 MtrunA17_Chr1g0189381 98.747 479 5 1 1 479 1 478 0.0 967
Msa0078660 MtrunA17_Chr7g0249451 67.304 471 148 3 9 475 7 475 0.0 658
Msa0078660 MtrunA17_Chr7g0221681 55.149 437 187 3 26 455 24 458 4.86e-176 503
Msa0078660 MtrunA17_Chr7g0265331 39.009 464 257 8 31 475 37 493 4.39e-107 327
Msa0078660 MtrunA17_Chr4g0027681 38.913 460 256 9 36 477 39 491 2.26e-104 320
Msa0078660 MtrunA17_Chr2g0320621 38.866 494 278 9 2 477 1 488 1.02e-102 315
Msa0078660 MtrunA17_Chr1g0179751 38.967 426 235 10 32 441 64 480 3.17e-98 305
Msa0078660 MtrunA17_Chr5g0401601 30.290 449 246 20 31 455 61 466 2.17e-39 150
Msa0078660 MtrunA17_Chr4g0053721 30.729 384 215 15 68 431 79 431 2.61e-34 136
Msa0078660 MtrunA17_Chr3g0130741 27.338 417 248 17 45 440 62 444 3.01e-32 128
Msa0078660 MtrunA17_Chr6g0475351 61.446 83 32 0 112 194 4 86 7.85e-31 114
Msa0078660 MtrunA17_Chr4g0010951 27.972 429 234 17 50 430 44 445 5.24e-30 121
Msa0078660 MtrunA17_Chr5g0435871 27.676 383 232 16 63 431 84 435 8.61e-30 120
Msa0078660 MtrunA17_Chr8g0352661 27.676 383 228 15 68 431 85 437 1.10e-29 120
Msa0078660 MtrunA17_Chr1g0159791 28.392 398 242 18 49 430 39 409 3.00e-29 119
Msa0078660 MtrunA17_Chr3g0130931 29.134 381 219 17 68 431 103 449 6.44e-29 118
Msa0078660 MtrunA17_Chr8g0371351 26.150 413 257 16 39 430 64 449 1.36e-28 118
Msa0078660 MtrunA17_Chr4g0001991 29.049 389 226 16 60 431 163 518 4.25e-28 117
Msa0078660 MtrunA17_Chr5g0435971 27.154 383 234 16 63 431 81 432 4.70e-28 115
Msa0078660 MtrunA17_Chr8g0386441 27.896 423 243 21 26 431 53 430 1.28e-27 114
Msa0078660 MtrunA17_Chr3g0099891 29.211 380 213 15 67 430 115 454 2.98e-27 114
Msa0078660 MtrunA17_Chr3g0124421 26.683 416 261 17 39 430 55 450 9.02e-27 113
Msa0078660 MtrunA17_Chr2g0307991 29.973 377 218 20 70 431 60 405 9.72e-27 111
Msa0078660 MtrunA17_Chr3g0087851 28.235 425 249 19 28 431 48 437 1.19e-26 112
Msa0078660 MtrunA17_Chr5g0406001 27.749 382 224 17 69 430 112 461 2.35e-26 112
Msa0078660 MtrunA17_Chr5g0395871 28.021 389 220 17 65 432 77 426 2.62e-26 110
Msa0078660 MtrunA17_Chr8g0352671 28.346 381 225 17 68 431 88 437 2.66e-26 110
Msa0078660 MtrunA17_Chr8g0384731 26.847 406 247 19 52 438 58 432 4.34e-26 110
Msa0078660 MtrunA17_Chr2g0291201 28.894 398 219 17 62 430 89 451 4.59e-26 110
Msa0078660 MtrunA17_Chr2g0310801 29.144 374 227 15 68 431 89 434 6.17e-26 109
Msa0078660 MtrunA17_Chr5g0442921 28.212 397 234 17 61 431 183 554 6.18e-26 110
Msa0078660 MtrunA17_Chr3g0095891 29.676 401 220 20 61 430 89 458 6.62e-26 110
Msa0078660 MtrunA17_Chr6g0484901 26.087 368 232 13 70 430 157 491 8.31e-26 110
Msa0078660 MtrunA17_Chr5g0395931 29.365 378 225 16 68 431 87 436 1.17e-25 108
Msa0078660 MtrunA17_Chr8g0371371 27.225 382 232 15 69 434 112 463 1.92e-25 109
Msa0078660 MtrunA17_Chr5g0419291 26.933 375 231 15 68 430 85 428 8.57e-25 106
Msa0078660 MtrunA17_Chr5g0395911 27.778 378 230 16 68 431 66 414 1.07e-24 105
Msa0078660 MtrunA17_Chr5g0425141 25.464 377 246 14 69 434 101 453 2.11e-24 106
Msa0078660 MtrunA17_Chr6g0484731 28.049 410 249 18 52 440 176 560 2.95e-24 105
Msa0078660 MtrunA17_Chr2g0333991 25.935 401 252 16 42 425 58 430 3.40e-24 104
Msa0078660 MtrunA17_Chr2g0308001 28.721 383 222 19 70 432 59 410 4.25e-24 104
Msa0078660 MtrunA17_Chr7g0275731 25.587 383 241 13 61 430 133 484 4.40e-24 104
Msa0078660 MtrunA17_Chr1g0210201 25.526 380 238 14 61 430 123 467 4.86e-23 101
Msa0078660 MtrunA17_Chr8g0390761 24.427 393 246 13 41 420 91 445 2.50e-22 99.4
Msa0078660 MtrunA17_Chr1g0212321 26.702 382 235 14 61 430 138 486 4.49e-22 99.0
Msa0078660 MtrunA17_Chr5g0415951 27.632 380 228 14 70 433 89 437 1.98e-21 96.7
Msa0078660 MtrunA17_Chr2g0310821 27.778 378 222 18 68 433 107 445 2.05e-21 96.7
Msa0078660 MtrunA17_Chr2g0311451 24.818 411 256 16 42 431 58 436 5.95e-21 95.1
Msa0078660 MtrunA17_Chr2g0310831 25.962 416 258 16 31 431 61 441 6.28e-21 95.1
Msa0078660 MtrunA17_Chr1g0165201 25.521 384 238 15 61 430 120 469 1.02e-20 94.7
Msa0078660 MtrunA17_Chr2g0312941 25.816 337 205 13 63 372 81 399 1.45e-20 94.0
Msa0078660 MtrunA17_Chr4g0019931 35.246 122 78 1 74 194 1 122 1.99e-20 87.0
Msa0078660 MtrunA17_Chr7g0267171 26.119 402 239 18 68 433 89 468 4.12e-20 92.8
Msa0078660 MtrunA17_Chr2g0309561 23.256 430 270 16 46 430 94 508 2.22e-19 90.9
Msa0078660 MtrunA17_Chr6g0486981 23.885 381 239 14 70 431 89 437 5.08e-19 89.4
Msa0078660 MtrunA17_Chr3g0099901 27.368 380 226 14 67 430 140 485 8.09e-19 89.0
Msa0078660 MtrunA17_Chr3g0110191 25.330 379 240 16 74 435 91 443 1.32e-18 88.2
Msa0078660 MtrunA17_Chr6g0457401 25.236 424 263 19 28 431 48 437 2.33e-18 87.4
Msa0078660 MtrunA17_Chr4g0023351 30.677 251 137 12 70 304 59 288 3.43e-18 85.1
Msa0078660 MtrunA17_Chr1g0164401 25.737 373 230 18 70 431 93 429 7.91e-18 85.5
Msa0078660 MtrunA17_Chr4g0061641 26.720 378 225 17 70 431 56 397 5.26e-17 82.8
Msa0078660 MtrunA17_Chr6g0487471 23.760 383 241 14 68 431 85 435 6.63e-17 82.8
Msa0078660 MtrunA17_Chr5g0395891 29.022 317 188 16 129 431 20 313 1.60e-16 80.5
Msa0078660 MtrunA17_Chr4g0056211 26.056 426 239 20 63 432 67 472 8.89e-16 79.7
Msa0078660 MtrunA17_Chr3g0112051 27.215 316 180 14 74 364 78 368 1.02e-15 79.3
Msa0078660 MtrunA17_Chr7g0239001 25.128 390 233 17 73 430 63 425 2.81e-15 77.8
Msa0078660 MtrunA17_Chr2g0307461 24.745 392 232 14 70 430 71 430 2.08e-14 75.1
Msa0078660 MtrunA17_Chr3g0078321 23.035 369 248 12 77 431 67 413 3.52e-14 74.3
Msa0078660 MtrunA17_Chr5g0434411 24.611 386 238 18 74 435 86 442 4.15e-14 74.3
Msa0078660 MtrunA17_Chr2g0287841 23.750 400 232 17 63 417 57 428 6.18e-14 73.6
Msa0078660 MtrunA17_Chr2g0287861 23.980 392 229 16 67 417 41 404 1.21e-13 72.8
Msa0078660 MtrunA17_Chr5g0430861 47.945 73 36 2 198 269 34 105 3.27e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0078660 AT1G05840.1 55.188 453 199 2 5 455 13 463 0.0 525
Msa0078660 AT5G36260.1 51.634 459 211 7 24 477 28 480 8.77e-169 484
Msa0078660 AT3G02740.1 50.000 486 221 8 2 471 1 480 2.81e-163 471
Msa0078660 AT1G65240.1 50.549 455 211 8 24 473 24 469 3.01e-158 457
Msa0078660 AT3G02740.2 53.598 403 181 5 69 471 9 405 6.60e-150 434
Msa0078660 AT5G22850.1 39.696 461 255 8 31 474 38 492 2.66e-105 323
Msa0078660 AT2G36670.2 37.553 474 268 7 20 474 35 499 2.03e-101 313
Msa0078660 AT2G36670.1 37.161 479 268 8 20 474 35 504 5.33e-99 307
Msa0078660 AT2G36670.4 39.512 410 235 5 69 474 33 433 6.64e-97 299
Msa0078660 AT2G36670.3 39.512 410 235 5 69 474 33 433 6.64e-97 299
Msa0078660 AT1G08210.1 37.778 450 258 9 7 442 11 452 9.87e-94 293
Msa0078660 AT1G08210.4 37.778 450 258 9 7 442 45 486 2.07e-93 293
Msa0078660 AT1G08210.3 37.778 450 258 9 7 442 59 500 2.66e-93 293
Msa0078660 AT1G08210.2 36.017 472 263 10 7 442 11 479 5.96e-89 281
Msa0078660 AT3G42550.1 25.355 493 280 15 7 478 5 430 7.44e-41 152
Msa0078660 AT5G43100.2 28.833 437 245 19 68 473 74 475 3.20e-37 142
Msa0078660 AT4G33490.2 27.766 461 266 22 2 439 4 420 3.66e-36 139
Msa0078660 AT5G43100.1 30.000 380 215 16 68 431 74 418 4.20e-36 141
Msa0078660 AT2G17760.1 29.197 411 245 16 39 430 66 449 3.38e-35 137
Msa0078660 AT3G50050.1 30.504 377 219 15 68 431 91 437 2.81e-33 133
Msa0078660 AT3G12700.1 27.352 457 270 18 7 431 35 461 5.57e-33 130
Msa0078660 AT3G25700.1 29.293 396 235 16 61 431 75 450 5.54e-31 125
Msa0078660 AT1G44130.1 26.700 397 245 16 52 431 33 400 3.27e-29 119
Msa0078660 AT4G33490.1 29.032 341 201 15 2 336 1 306 9.75e-29 117
Msa0078660 AT1G25510.1 25.858 379 238 12 61 430 139 483 2.42e-28 117
Msa0078660 AT2G23945.1 26.923 416 257 16 39 430 56 448 5.43e-27 113
Msa0078660 AT5G10080.1 26.087 391 249 15 69 442 99 466 1.75e-26 112
Msa0078660 AT1G49050.1 27.273 407 243 21 52 430 187 568 6.05e-26 111
Msa0078660 AT3G51350.1 26.506 415 257 18 39 430 63 452 2.16e-25 109
Msa0078660 AT3G59080.1 25.652 460 283 19 2 431 103 533 2.22e-25 109
Msa0078660 AT3G18490.1 26.190 378 241 13 61 430 153 500 2.29e-25 109
Msa0078660 AT1G01300.1 27.670 412 223 18 46 431 123 485 3.37e-25 108
Msa0078660 AT3G54400.1 25.737 373 231 15 70 431 88 425 3.37e-25 107
Msa0078660 AT4G35880.1 25.333 375 238 17 69 430 106 451 4.96e-25 108
Msa0078660 AT3G51340.2 26.087 414 254 16 39 430 64 447 1.04e-24 107
Msa0078660 AT1G49050.2 26.667 390 235 20 69 430 29 395 2.88e-24 105
Msa0078660 AT2G03200.1 26.410 390 226 16 67 430 104 458 1.85e-23 103
Msa0078660 AT5G10770.1 25.995 377 236 15 67 431 129 474 2.61e-23 102
Msa0078660 AT4G30040.1 27.225 382 227 15 63 425 78 427 8.70e-23 100
Msa0078660 AT3G51330.3 27.778 414 254 17 39 430 63 453 1.46e-22 100
Msa0078660 AT3G51330.1 27.778 414 254 17 39 430 63 453 1.94e-22 100
Msa0078660 AT1G77480.2 27.901 405 246 19 44 430 43 419 3.93e-22 99.0
Msa0078660 AT1G77480.1 27.211 441 268 20 45 467 44 449 5.59e-22 99.0
Msa0078660 AT1G49050.3 28.475 295 180 14 52 335 187 461 1.02e-21 98.2
Msa0078660 AT3G51340.1 25.641 429 249 16 39 430 64 459 1.07e-21 98.6
Msa0078660 AT1G31450.1 27.097 465 272 21 7 434 11 445 1.17e-21 97.8
Msa0078660 AT3G61820.1 26.166 386 241 13 61 430 126 483 1.28e-21 97.8
Msa0078660 AT3G20015.1 26.632 383 234 14 61 430 122 470 1.33e-21 97.8
Msa0078660 AT3G51360.1 25.000 424 260 15 35 433 48 438 3.35e-21 96.7
Msa0078660 AT5G45120.1 26.981 467 252 24 25 430 40 478 4.78e-21 96.3
Msa0078660 AT3G51360.9 25.000 424 260 15 35 433 58 448 4.99e-21 96.3
Msa0078660 AT1G64830.1 28.421 380 222 15 68 431 84 429 5.69e-21 95.5
Msa0078660 AT4G35880.2 27.070 314 194 16 69 369 106 397 9.92e-21 94.7
Msa0078660 AT2G42980.1 26.545 437 254 19 28 431 123 525 3.02e-20 94.0
Msa0078660 AT2G28040.1 24.865 370 229 13 70 432 65 392 5.40e-20 92.4
Msa0078660 AT5G33340.1 27.632 380 237 14 63 431 83 435 8.67e-20 92.0
Msa0078660 AT2G28040.2 24.865 370 229 13 70 432 56 383 8.92e-20 91.7
Msa0078660 AT2G28010.1 24.194 372 232 11 69 432 64 393 1.04e-19 91.3
Msa0078660 AT2G35615.1 26.024 415 253 17 46 434 61 447 1.32e-19 91.7
Msa0078660 AT3G51360.7 24.479 384 238 14 69 433 4 354 2.17e-19 90.5
Msa0078660 AT3G51340.3 27.622 286 182 9 39 307 64 341 2.36e-19 90.5
Msa0078660 AT3G51340.4 27.622 286 182 9 39 307 64 341 2.50e-19 90.1
Msa0078660 AT3G52500.1 27.586 406 227 17 68 431 88 468 3.58e-19 90.5
Msa0078660 AT4G30030.1 25.067 371 239 12 70 430 78 419 2.21e-18 87.8
Msa0078660 AT3G51330.2 27.926 376 231 15 39 392 63 420 4.12e-18 87.0
Msa0078660 AT1G79720.1 27.749 382 221 18 70 430 135 482 9.57e-18 86.3
Msa0078660 AT2G28030.1 22.312 372 239 13 69 432 60 389 4.22e-17 83.6
Msa0078660 AT5G10760.1 23.698 384 239 15 63 430 119 464 4.50e-17 84.0
Msa0078660 AT5G37540.1 24.031 387 232 15 74 430 84 438 4.78e-17 83.6
Msa0078660 AT5G07030.1 25.526 380 226 18 70 431 115 455 4.00e-16 80.9
Msa0078660 AT2G28225.1 21.958 378 237 13 69 432 66 399 4.53e-16 80.5
Msa0078660 AT3G51360.6 25.627 359 216 13 35 370 58 388 5.32e-16 80.5
Msa0078660 AT3G51360.5 25.627 359 216 13 35 370 58 388 5.42e-16 80.5
Msa0078660 AT3G51360.10 25.627 359 216 13 35 370 48 378 6.89e-16 80.1
Msa0078660 AT3G51360.4 25.627 359 216 13 35 370 48 378 7.62e-16 79.7
Msa0078660 AT1G66180.1 22.922 397 222 16 74 431 76 427 1.54e-15 79.0
Msa0078660 AT2G39710.1 25.065 387 225 20 74 425 69 425 1.94e-15 79.0
Msa0078660 AT2G28220.1 21.564 422 256 16 29 432 35 399 2.49e-15 78.2
Msa0078660 AT3G51360.2 27.018 285 182 9 35 305 58 330 9.38e-15 75.9
Msa0078660 AT3G59080.2 22.757 457 264 16 2 431 103 497 1.21e-14 76.6
Msa0078660 AT5G02190.1 23.096 394 234 17 79 433 82 445 1.59e-13 72.8
Msa0078660 AT4G12920.1 24.093 386 223 17 65 430 52 387 2.15e-11 65.9

Find 139 sgRNAs with CRISPR-Local

Find 799 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGATAATTTGGTGTTTC+AGG 0.166469 1_2:+56320832 Msa0078660:CDS
AATGGAGTTGTTCTGACTTT+TGG 0.238222 1_2:-56323599 None:intergenic
GATTAATGAACATACATATT+TGG 0.242714 1_2:-56323626 None:intergenic
GAAGCCCTTGATGGAATAAT+TGG 0.245572 1_2:+56323449 Msa0078660:CDS
TGGACATAGTAGTCCTTCTT+TGG 0.254367 1_2:-56322576 None:intergenic
CCCTCGGATATATTTGATTC+TGG 0.259620 1_2:+56325535 Msa0078660:CDS
TGTCCTTTCCATCCTTAGTT+TGG 0.271260 1_2:-56327185 None:intergenic
GATATATTTGATTCTGGAAA+TGG 0.285563 1_2:+56325541 Msa0078660:CDS
TCATCCGTTGATTTCAATCT+TGG 0.285586 1_2:+56320923 Msa0078660:CDS
TGACTATCTGTTCCAATATA+AGG 0.288332 1_2:+56326711 Msa0078660:CDS
CTTGATGGAATAATTGGTTT+TGG 0.295754 1_2:+56323455 Msa0078660:CDS
CTTGTACGATCTTGAGAATA+TGG 0.302586 1_2:+56330638 Msa0078660:CDS
TCTCCATAAGTTATGCTATA+GGG 0.307360 1_2:-56322927 None:intergenic
CTTCACGATAAAGCTGGTTT+TGG 0.308160 1_2:-56320434 None:intergenic
GTCCTTTCCATCCTTAGTTT+GGG 0.310111 1_2:-56327184 None:intergenic
ACATATGATGGTCCGATTCC+TGG 0.332528 1_2:+56322882 Msa0078660:CDS
ATTATTGATTATACTAGCTT+TGG 0.334337 1_2:+56320790 Msa0078660:CDS
CAATATTCTACCAATTAAAA+AGG 0.337258 1_2:-56331176 None:intergenic
ATGCGAGCTAATTTCAATTC+AGG 0.348914 1_2:-56325727 None:intergenic
GGAAAGGACATGACACTTCT+TGG 0.353144 1_2:+56327198 Msa0078660:CDS
AAGTTCATACCACCTTATAT+TGG 0.354647 1_2:-56326723 None:intergenic
CAAATACCTTTGGAATTAGT+TGG 0.360512 1_2:-56325624 None:intergenic
TGTTGCGAATGGAGATAATT+TGG 0.363552 1_2:+56320823 Msa0078660:CDS
AATGGTCTTCCTACTAGAAC+TGG 0.364096 1_2:+56320950 Msa0078660:CDS
AATATTTGCCATAGGGGAAT+TGG 0.388793 1_2:+56323571 Msa0078660:CDS
TATTCCATCAAGGGCTTCTT+CGG 0.390964 1_2:-56323444 None:intergenic
AATGCATACATACACCGATT+TGG 0.391207 1_2:-56322665 None:intergenic
TAGCCTGGTGTCCGATGTAT+TGG 0.397365 1_2:+56327144 Msa0078660:intron
GAAGGTTTATGATTATATAA+TGG 0.403319 1_2:+56331423 Msa0078660:three_prime_UTR
TGCCCCTATAGCATAACTTA+TGG 0.404144 1_2:+56322924 Msa0078660:CDS
AGGTTGTATTTCACTAAACT+TGG 0.408327 1_2:+56322543 Msa0078660:intron
TCAAAATGTAGTTTGACAAC+TGG 0.411155 1_2:-56326658 None:intergenic
GATCTTGAGAATATGGCTAT+TGG 0.412629 1_2:+56330645 Msa0078660:CDS
TATGATGTGAAATGTGAGTA+TGG 0.417643 1_2:-56320666 None:intergenic
TATTTCACTAAACTTGGGCT+TGG 0.419254 1_2:+56322549 Msa0078660:CDS
TTGAAGAATATTGAAGTTGA+TGG 0.419885 1_2:+56325496 Msa0078660:CDS
TCTGAAGTATGAGATCCCTT+TGG 0.425665 1_2:-56322825 None:intergenic
ATAAGAATCTATACGAGAAC+TGG 0.434723 1_2:-56331340 None:intergenic
GATTTCAATCTTGGTGGTAA+TGG 0.434766 1_2:+56320932 Msa0078660:CDS
TCTTCCGAAGAAGCCCTTGA+TGG 0.436173 1_2:+56323440 Msa0078660:CDS
CTGAAGTATGAGATCCCTTT+GGG 0.444221 1_2:-56322824 None:intergenic
TGCATCCTTCACTTTAATGC+TGG 0.446229 1_2:-56331101 None:intergenic
ATCTCCATAAGTTATGCTAT+AGG 0.446865 1_2:-56322928 None:intergenic
TGTTATATATTAAATGATGA+AGG 0.449165 1_2:+56331405 Msa0078660:three_prime_UTR
ATAAGTTATGCTATAGGGGC+AGG 0.450756 1_2:-56322922 None:intergenic
CAACTACTGGATACTATGTC+AGG 0.454687 1_2:+56322958 Msa0078660:CDS
TAGATTCTTATAGATGCAAA+AGG 0.456456 1_2:+56331352 Msa0078660:three_prime_UTR
ATATATTTGATTCTGGAAAT+GGG 0.463580 1_2:+56325542 Msa0078660:CDS
TCCGTTGATTTCAATCTTGG+TGG 0.470108 1_2:+56320926 Msa0078660:CDS
TTGTAACCTTGCAGTGTTGA+TGG 0.473520 1_2:+56326628 Msa0078660:intron
ACTGCACACCTTATCATTCA+AGG 0.476752 1_2:-56331294 None:intergenic
TACTATGTCCAAGTTGATAC+AGG 0.477388 1_2:+56322588 Msa0078660:CDS
TCATAATTCCTTGAATGATA+AGG 0.478561 1_2:+56331286 Msa0078660:three_prime_UTR
TCCGCCTTACAACCAGGAAT+CGG 0.485297 1_2:-56322894 None:intergenic
TCTGAATAATCGATTAATGA+TGG 0.486504 1_2:+56320754 Msa0078660:exon
TGGTTCCACCAATTCCCCTA+TGG 0.487442 1_2:-56323579 None:intergenic
GCTGTACAATCTGGCACATT+GGG 0.492450 1_2:+56323413 Msa0078660:CDS
ATTGATCAATTTAATTTCAA+CGG 0.492965 1_2:-56320543 None:intergenic
CAATTACTTCACGATAAAGC+TGG 0.497836 1_2:-56320440 None:intergenic
CACTGCCTTGACAATATTCG+TGG 0.504030 1_2:+56323542 Msa0078660:CDS
TGTCCTACGAAAAGCCAAAT+CGG 0.504507 1_2:+56322651 Msa0078660:CDS
CAAAACCAATTATTCCATCA+AGG 0.505616 1_2:-56323454 None:intergenic
GGTGTGCAGTGTGGTTGATA+TGG 0.506968 1_2:+56331307 Msa0078660:three_prime_UTR
CGCTGTACAATCTGGCACAT+TGG 0.507679 1_2:+56323412 Msa0078660:CDS
AAAGTGAAGGATGCAACGAC+TGG 0.508416 1_2:+56331109 Msa0078660:CDS
AGATTCTTATAGATGCAAAA+GGG 0.509842 1_2:+56331353 Msa0078660:three_prime_UTR
GAGACTCACCCAGTTCTAGT+AGG 0.514151 1_2:-56320959 None:intergenic
ATTTGCCATAGGGGAATTGG+TGG 0.515298 1_2:+56323574 Msa0078660:CDS
TGGTCCGATTCCTGGTTGTA+AGG 0.515945 1_2:+56322890 Msa0078660:CDS
TAATTTCAATTCAGGCTGAC+GGG 0.516305 1_2:-56325719 None:intergenic
TATAGCATAACTTATGGAGA+TGG 0.523472 1_2:+56322930 Msa0078660:CDS
CGTCGGAAAACGAGTTTAAG+TGG 0.524546 1_2:+56320860 Msa0078660:CDS
GGTTGTATTTCACTAAACTT+GGG 0.524940 1_2:+56322544 Msa0078660:intron
GGAGATGGAAGTGCAACTAC+TGG 0.525159 1_2:+56322945 Msa0078660:CDS
AGTTGGTCATAGACTATGAC+AGG 0.528228 1_2:-56325607 None:intergenic
AAAACCAATTATTCCATCAA+GGG 0.529475 1_2:-56323453 None:intergenic
TATGGAGATTTCCGTTGATC+CGG 0.531316 1_2:-56322998 None:intergenic
AAGGGCACAGTGATTGATAG+TGG 0.533492 1_2:+56325565 Msa0078660:CDS
GGTGGTGGAATATTTGCCAT+AGG 0.534159 1_2:+56323563 Msa0078660:CDS
TGGGCTTGGCTCTCCAAAGA+AGG 0.534533 1_2:+56322563 Msa0078660:CDS
GTGGTGGAATATTTGCCATA+GGG 0.535995 1_2:+56323564 Msa0078660:CDS
TTTGATTCTGGAAATGGGAA+GGG 0.536848 1_2:+56325547 Msa0078660:CDS
GAAAAGTGTGACCCAAACTA+AGG 0.537843 1_2:+56327173 Msa0078660:CDS
CTCCATAAGTTATGCTATAG+GGG 0.541427 1_2:-56322926 None:intergenic
GATTGATAGTGGAACAACCT+TGG 0.548951 1_2:+56325576 Msa0078660:CDS
CTAATTTCAATTCAGGCTGA+CGG 0.548990 1_2:-56325720 None:intergenic
ATTTGATTCTGGAAATGGGA+AGG 0.551449 1_2:+56325546 Msa0078660:CDS
TGGTGTTTCAGGTGCAGCGT+CGG 0.553360 1_2:+56320843 Msa0078660:CDS
CTCTTCCAGCATTAAAGTGA+AGG 0.554484 1_2:+56331096 Msa0078660:CDS
ACAGCTTGCTGCATCTCGAA+AGG 0.556530 1_2:+56323502 Msa0078660:CDS
AGTGTGACCCAAACTAAGGA+TGG 0.559654 1_2:+56327177 Msa0078660:CDS
GGTGTTTCCGCCTTACAACC+AGG 0.561933 1_2:-56322900 None:intergenic
TAACCTTGCAGTGTTGATGG+TGG 0.562260 1_2:+56326631 Msa0078660:intron
ACATACATATTTGGTACCAA+TGG 0.562501 1_2:-56323617 None:intergenic
CGAAATTTGAGTCCACTGAG+TGG 0.566394 1_2:+56320379 Msa0078660:five_prime_UTR
TATCACTTCCTGTATCAACT+TGG 0.567282 1_2:-56322596 None:intergenic
AGGTGTGGCGCTGTACAATC+TGG 0.571318 1_2:+56323404 Msa0078660:intron
ATGGCGTACTTTCCAGCATA+CGG 0.571746 1_2:-56325772 None:intergenic
ACTAAAAGAAAACACAGGAT+AGG 0.572181 1_2:+56320345 Msa0078660:five_prime_UTR
TTGAGAATATGGCTATTGGA+TGG 0.573054 1_2:+56330649 Msa0078660:CDS
CAGTAGAGTGAATGAATGAG+TGG 0.577972 1_2:-56320589 None:intergenic
CAGCCAATACATCGGACACC+AGG 0.583592 1_2:-56327147 None:intergenic
AAAAGTCAGAACAACTCCAT+TGG 0.586123 1_2:+56323601 Msa0078660:CDS
CTTGACAATATTCGTGGTGG+TGG 0.588390 1_2:+56323548 Msa0078660:CDS
CAAGCTTAACCGACTAAGAG+AGG 0.593128 1_2:-56320627 None:intergenic
TTGACTCTCTATGACCCAAA+GGG 0.594661 1_2:+56322810 Msa0078660:CDS
AGGAATCGGACCATCATATG+TGG 0.599832 1_2:-56322880 None:intergenic
CTGGTGTCCGATGTATTGGC+TGG 0.602129 1_2:+56327148 Msa0078660:CDS
AAGGACATGACACTTCTTGG+AGG 0.602130 1_2:+56327201 Msa0078660:CDS
GACCCAAACTAAGGATGGAA+AGG 0.607035 1_2:+56327182 Msa0078660:CDS
CCAGAATCAAATATATCCGA+GGG 0.608496 1_2:-56325535 None:intergenic
ATTGAAATTAGCTCGCATTG+AGG 0.611001 1_2:+56325732 Msa0078660:CDS
TCCAGAATCAAATATATCCG+AGG 0.613600 1_2:-56325536 None:intergenic
GAAATTTGAGTCCACTGAGT+GGG 0.614261 1_2:+56320380 Msa0078660:five_prime_UTR
AGTAGAGTGAATGAATGAGT+GGG 0.617908 1_2:-56320588 None:intergenic
TGATGTTCTACAGCTTCCCT+CGG 0.625997 1_2:+56325519 Msa0078660:CDS
GATTCTTATAGATGCAAAAG+GGG 0.635162 1_2:+56331354 Msa0078660:three_prime_UTR
CTTGACTCTCTATGACCCAA+AGG 0.636415 1_2:+56322809 Msa0078660:CDS
TAAGTTATGCTATAGGGGCA+GGG 0.637715 1_2:-56322921 None:intergenic
CTATGACCAACTAATTCCAA+AGG 0.638550 1_2:+56325618 Msa0078660:CDS
ACCACCAAGATTGAAATCAA+CGG 0.639049 1_2:-56320927 None:intergenic
CTATCTGTTCCAATATAAGG+TGG 0.639723 1_2:+56326714 Msa0078660:CDS
TCCGATTCCTGGTTGTAAGG+CGG 0.644021 1_2:+56322893 Msa0078660:CDS
CACCACCACGAATATTGTCA+AGG 0.649946 1_2:-56323547 None:intergenic
AACTACTGGATACTATGTCA+GGG 0.651961 1_2:+56322959 Msa0078660:CDS
TGGTGGAATATTTGCCATAG+GGG 0.652757 1_2:+56323565 Msa0078660:CDS
TATGACAGGAAGATAAGCCA+AGG 0.661057 1_2:-56325593 None:intergenic
ATGGTCTTCCTACTAGAACT+GGG 0.663957 1_2:+56320951 Msa0078660:CDS
TACAGGAAGTGATATTCTGT+GGG 0.670376 1_2:+56322605 Msa0078660:CDS
CAAACACTAAAAGAAAACAC+AGG 0.676062 1_2:+56320340 Msa0078660:five_prime_UTR
ACTGGAATAGTACATACAGT+GGG 0.679660 1_2:+56331127 Msa0078660:CDS
ATACAGGAAGTGATATTCTG+TGG 0.684061 1_2:+56322604 Msa0078660:CDS
GACTGGAATAGTACATACAG+TGG 0.688634 1_2:+56331126 Msa0078660:CDS
TTGTAGGGCACATTACAATG+TGG 0.689913 1_2:+56325471 Msa0078660:intron
TATTGGAACAGATAGTCATG+AGG 0.699625 1_2:-56326706 None:intergenic
TGCCTTGACAATATTCGTGG+TGG 0.718049 1_2:+56323545 Msa0078660:CDS
GAATGATAAGGTGTGCAGTG+TGG 0.729307 1_2:+56331298 Msa0078660:three_prime_UTR
CATCACGATCATCTTCGTCG+TGG 0.733562 1_2:+56320890 Msa0078660:CDS
GATGTGAAATGTGAGTATGG+AGG 0.752371 1_2:-56320663 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTTTTAAAAATATGTT+AGG + chr1_2:56321522-56321541 Msa0078660:intron 10.0%
!! AACAAAATTAAGAATAAAAT+CGG - chr1_2:56321973-56321992 None:intergenic 10.0%
!!! TATATTAGTTTATTTGATTT+AGG + chr1_2:56322523-56322542 Msa0078660:intron 10.0%
!! AAATACAAAAATTAAATAAG+GGG - chr1_2:56322760-56322779 None:intergenic 10.0%
!! GAAAATACAAAAATTAAATA+AGG - chr1_2:56322762-56322781 None:intergenic 10.0%
!! ATAAAATCCAATAAAAAAAA+TGG - chr1_2:56324044-56324063 None:intergenic 10.0%
!! ATATATATATATATGTATTG+AGG - chr1_2:56324929-56324948 None:intergenic 10.0%
!! ATTAGTATAAAATAAAATAG+AGG + chr1_2:56326092-56326111 Msa0078660:intron 10.0%
!!! CTTTAAAATTTTATTTAACT+AGG + chr1_2:56326483-56326502 Msa0078660:intron 10.0%
!!! TTTTTCTAATACTAAAAAAA+TGG - chr1_2:56330903-56330922 None:intergenic 10.0%
!!! ATTGATCAATTTAATTTCAA+CGG - chr1_2:56320546-56320565 None:intergenic 15.0%
!!! TACTTTTAATGTTATCATTA+CGG + chr1_2:56321559-56321578 Msa0078660:intron 15.0%
!!! AATAAGTTGAAAATAACTTA+TGG + chr1_2:56322248-56322267 Msa0078660:intron 15.0%
!! ATAAAACAGTTAATTCAAAA+AGG - chr1_2:56323226-56323245 None:intergenic 15.0%
!!! TTTTTGAATTAACTGTTTTA+TGG + chr1_2:56323225-56323244 Msa0078660:intron 15.0%
!!! ATTTTATTTTTGTTCTTTGA+TGG + chr1_2:56324057-56324076 Msa0078660:intron 15.0%
!!! TTTTATTTTTGTTCTTTGAT+GGG + chr1_2:56324058-56324077 Msa0078660:intron 15.0%
!!! CATTTTATGTATCATTTAAA+TGG - chr1_2:56324982-56325001 None:intergenic 15.0%
!! CTTAAAGACAAATTTATAAA+TGG + chr1_2:56325020-56325039 Msa0078660:intron 15.0%
!!! AAATTTATAAATGGTTGATA+TGG + chr1_2:56325029-56325048 Msa0078660:intron 15.0%
!!! AATTTATAAATGGTTGATAT+GGG + chr1_2:56325030-56325049 Msa0078660:intron 15.0%
!! TAATCAAATATCATTAGAAT+AGG + chr1_2:56325125-56325144 Msa0078660:intron 15.0%
!! AATTCAATTAATATTTCTTC+TGG + chr1_2:56325662-56325681 Msa0078660:intron 15.0%
!! TATTATTGTTTGCAAATATT+AGG + chr1_2:56325850-56325869 Msa0078660:intron 15.0%
!! ATTATTGTTTGCAAATATTA+GGG + chr1_2:56325851-56325870 Msa0078660:intron 15.0%
!!! TTTTAAAGAACAATCTTAAA+TGG - chr1_2:56326471-56326490 None:intergenic 15.0%
!!! TGATTATTTTTCGATTTATT+AGG + chr1_2:56327318-56327337 Msa0078660:intron 15.0%
!!! ATTATTTTCAATTTCAGATT+TGG + chr1_2:56330596-56330615 Msa0078660:intron 15.0%
!! TAGTATTAGAAAAATAAGAA+AGG + chr1_2:56330909-56330928 Msa0078660:intron 15.0%
!! GTTATAAAAATAGTTTAACA+TGG - chr1_2:56331224-56331243 None:intergenic 15.0%
!!! GTTAAACTATTTTTATAACT+AGG + chr1_2:56331225-56331244 Msa0078660:CDS 15.0%
!! TGTTATATATTAAATGATGA+AGG + chr1_2:56331405-56331424 Msa0078660:three_prime_UTR 15.0%
!!! TCTATGTTTGGAAAATTTTT+AGG - chr1_2:56320485-56320504 None:intergenic 20.0%
!!! AAGATTATCTTTTCTATGTT+TGG - chr1_2:56320497-56320516 None:intergenic 20.0%
!!! ATTATTGATTATACTAGCTT+TGG + chr1_2:56320790-56320809 Msa0078660:CDS 20.0%
!!! ACTTTTAATGTTATCATTAC+GGG + chr1_2:56321560-56321579 Msa0078660:intron 20.0%
!! ATGATGCTATATAGTTTAAT+TGG + chr1_2:56321810-56321829 Msa0078660:intron 20.0%
!! TTAACTGTAGTATAATGTAA+TGG + chr1_2:56321899-56321918 Msa0078660:intron 20.0%
!! TCTAAAAAAGATCGAAAAAA+TGG + chr1_2:56322448-56322467 Msa0078660:intron 20.0%
!! ATACAATACAATGTAAATTG+TGG - chr1_2:56323079-56323098 None:intergenic 20.0%
!!! ATTGTTGTTGAATTGAATTA+GGG + chr1_2:56323141-56323160 Msa0078660:intron 20.0%
!!! TAAAATATTTTCCATTCAAG+TGG + chr1_2:56323251-56323270 Msa0078660:intron 20.0%
!! CTTTAATTCTTTATCAATCT+AGG - chr1_2:56323317-56323336 None:intergenic 20.0%
!! GAATTAAAGAATAAAATCAC+TGG + chr1_2:56323328-56323347 Msa0078660:intron 20.0%
!! GATTAATGAACATACATATT+TGG - chr1_2:56323629-56323648 None:intergenic 20.0%
!!! GAAAATAAATTTTCTAGTTG+TGG + chr1_2:56323836-56323855 Msa0078660:intron 20.0%
!!! TAGTTGTGGATTTTATTTTT+GGG + chr1_2:56323850-56323869 Msa0078660:intron 20.0%
!!! CAATTCTTCTTGTTTTTATT+TGG + chr1_2:56324796-56324815 Msa0078660:intron 20.0%
!! ATTAAAAGCAAGATATTTGA+TGG - chr1_2:56325109-56325128 None:intergenic 20.0%
!!! ATATATTTGATTCTGGAAAT+GGG + chr1_2:56325542-56325561 Msa0078660:CDS 20.0%
!! AAAAATGTTACAATGGTAAA+TGG - chr1_2:56325794-56325813 None:intergenic 20.0%
!! TCTATACAAAAATGTTACAA+TGG - chr1_2:56325801-56325820 None:intergenic 20.0%
!!! TCATTATTCATTTTTCCTAT+TGG + chr1_2:56325959-56325978 Msa0078660:intron 20.0%
!!! CATTATTCATTTTTCCTATT+GGG + chr1_2:56325960-56325979 Msa0078660:intron 20.0%
!! TAGGATTCAGTTAATATATT+AGG + chr1_2:56326133-56326152 Msa0078660:intron 20.0%
!! AGGATTCAGTTAATATATTA+GGG + chr1_2:56326134-56326153 Msa0078660:intron 20.0%
!!! ATTTTTTATAGCACATAATG+TGG - chr1_2:56326257-56326276 None:intergenic 20.0%
!!! TCCTTTTCATTTTCTTTTTT+GGG + chr1_2:56326315-56326334 Msa0078660:intron 20.0%
!! CTTGTACAAAATTGAAATTT+GGG - chr1_2:56326808-56326827 None:intergenic 20.0%
!! ACTTGTACAAAATTGAAATT+TGG - chr1_2:56326809-56326828 None:intergenic 20.0%
!! TCATGTGATTGTAAATTAAA+TGG + chr1_2:56326941-56326960 Msa0078660:intron 20.0%
!! TAGAACTGAAAAATAAACTA+GGG - chr1_2:56327492-56327511 None:intergenic 20.0%
!! ATAGAACTGAAAAATAAACT+AGG - chr1_2:56327493-56327512 None:intergenic 20.0%
!! ATTTATCTATCTAACTTTGT+GGG + chr1_2:56328058-56328077 Msa0078660:intron 20.0%
!! TTACAAATGTAAGTTATTTG+AGG + chr1_2:56328354-56328373 Msa0078660:intron 20.0%
!! CAAATTATCAAATGCATAAA+AGG - chr1_2:56329512-56329531 None:intergenic 20.0%
!!! ATAAAAAATGTTGTTTTGCA+TGG - chr1_2:56329671-56329690 None:intergenic 20.0%
!!! AGTATAAACAAAAGCATAAT+AGG + chr1_2:56329934-56329953 Msa0078660:intron 20.0%
!!! AGAATGTTTATTTTTGTGAA+TGG + chr1_2:56330012-56330031 Msa0078660:intron 20.0%
!! TTTATCATATGTTATTCTTG+TGG - chr1_2:56330185-56330204 None:intergenic 20.0%
!! TAGACCAACATATTATTAAT+AGG - chr1_2:56330277-56330296 None:intergenic 20.0%
!!! TCTGATGTTAAAATTCATTT+TGG + chr1_2:56330344-56330363 Msa0078660:intron 20.0%
!! ATTCTTAAATTAACACCAAA+TGG - chr1_2:56330442-56330461 None:intergenic 20.0%
!!! TTAACTTCCATTGTTTTTTA+GGG + chr1_2:56331007-56331026 Msa0078660:intron 20.0%
!! CAATATTCTACCAATTAAAA+AGG - chr1_2:56331179-56331198 None:intergenic 20.0%
!!! GGCGATTTTTTAATTTTTTT+TGG + chr1_2:56331375-56331394 Msa0078660:three_prime_UTR 20.0%
! TCTGAATAATCGATTAATGA+TGG + chr1_2:56320754-56320773 Msa0078660:exon 25.0%
! TCATATTCATTAAATTGACG+TGG - chr1_2:56321049-56321068 None:intergenic 25.0%
!! TGATTCAGTGTTATTAATAG+TGG + chr1_2:56321115-56321134 Msa0078660:intron 25.0%
!!! TCAGTTTTAATTCATGTTTC+TGG - chr1_2:56321297-56321316 None:intergenic 25.0%
!!! TTTTTGCATATTGGTGATAT+CGG - chr1_2:56321628-56321647 None:intergenic 25.0%
! TATAGTTTAATTGGTATGCA+CGG + chr1_2:56321819-56321838 Msa0078660:intron 25.0%
! ATTATTGAAGCAATACAATG+TGG + chr1_2:56322053-56322072 Msa0078660:intron 25.0%
! AAACATGCTCTAACTATAAA+CGG + chr1_2:56322361-56322380 Msa0078660:intron 25.0%
! TATTAGGAGACAAACAAATA+GGG - chr1_2:56322413-56322432 None:intergenic 25.0%
! TTATTAGGAGACAAACAAAT+AGG - chr1_2:56322414-56322433 None:intergenic 25.0%
!!! TTTCGATCTTTTTTAGATCT+TGG - chr1_2:56322445-56322464 None:intergenic 25.0%
!!! AAAATAGCAGCATCATTTTT+GGG + chr1_2:56323030-56323049 Msa0078660:CDS 25.0%
!! ATTGTATGTTGTTGAGTTTT+CGG + chr1_2:56323092-56323111 Msa0078660:intron 25.0%
!! CATTGTTGTTGAATTGAATT+AGG + chr1_2:56323140-56323159 Msa0078660:intron 25.0%
!! TTGTTGTTGAATTGAATTAG+GGG + chr1_2:56323142-56323161 Msa0078660:intron 25.0%
!!! TTGTTATTTTTTCTCATGAG+TGG + chr1_2:56323168-56323187 Msa0078660:intron 25.0%
!!! TGTTATTTTTTCTCATGAGT+GGG + chr1_2:56323169-56323188 Msa0078660:intron 25.0%
! AAAACCAATTATTCCATCAA+GGG - chr1_2:56323456-56323475 None:intergenic 25.0%
!! AGTTGATATGCAATTAAAGT+AGG + chr1_2:56323789-56323808 Msa0078660:intron 25.0%
! GTTGATATGCAATTAAAGTA+GGG + chr1_2:56323790-56323809 Msa0078660:intron 25.0%
!!! CTAGTTGTGGATTTTATTTT+TGG + chr1_2:56323849-56323868 Msa0078660:intron 25.0%
!! TTTGCATTTTTCTATCCATT+TGG + chr1_2:56324240-56324259 Msa0078660:intron 25.0%
! CACTAAAACATTTATCCAAA+TGG - chr1_2:56324258-56324277 None:intergenic 25.0%
!!! CATTTGGATAAATGTTTTAG+TGG + chr1_2:56324256-56324275 Msa0078660:intron 25.0%
! ACACTTAAAATCAATGTAGT+GGG - chr1_2:56324295-56324314 None:intergenic 25.0%
! AACACTTAAAATCAATGTAG+TGG - chr1_2:56324296-56324315 None:intergenic 25.0%
! AATACAGTAACTGATGTTAA+GGG + chr1_2:56324485-56324504 Msa0078660:intron 25.0%
!!! GAAGGCAAATTTTTGTTTAT+GGG + chr1_2:56324697-56324716 Msa0078660:intron 25.0%
! TTGAAGAATATTGAAGTTGA+TGG + chr1_2:56325496-56325515 Msa0078660:CDS 25.0%
!! GATATATTTGATTCTGGAAA+TGG + chr1_2:56325541-56325560 Msa0078660:CDS 25.0%
! TTTCTAGATACAAATACCTT+TGG - chr1_2:56325637-56325656 None:intergenic 25.0%
! AACAGCAAAATATGACATTT+GGG - chr1_2:56326024-56326043 None:intergenic 25.0%
! AAACAGCAAAATATGACATT+TGG - chr1_2:56326025-56326044 None:intergenic 25.0%
!! GTCCTTTTCATTTTCTTTTT+TGG + chr1_2:56326314-56326333 Msa0078660:intron 25.0%
! GTCTCTACACATATAATATA+TGG - chr1_2:56326920-56326939 None:intergenic 25.0%
! TATCAGTAAAATTCTCCATA+TGG - chr1_2:56327018-56327037 None:intergenic 25.0%
! TGCAAACTTATAAGCAAATA+AGG - chr1_2:56327357-56327376 None:intergenic 25.0%
! TCATTCTAAACTATTCAACT+TGG + chr1_2:56327403-56327422 Msa0078660:intron 25.0%
! GATTTATCTATCTAACTTTG+TGG + chr1_2:56328057-56328076 Msa0078660:intron 25.0%
!!! AATTATGTGTTACTTGTACT+TGG + chr1_2:56328246-56328265 Msa0078660:intron 25.0%
! CTGGTTGAAATCAAATTAAA+AGG - chr1_2:56328276-56328295 None:intergenic 25.0%
!! ATTTGTAACAAGCTTTTTGA+GGG - chr1_2:56328342-56328361 None:intergenic 25.0%
! AACATCATATACTTGTTTGA+AGG - chr1_2:56328418-56328437 None:intergenic 25.0%
! GTAAGCAAGTTATTAATACA+CGG - chr1_2:56328671-56328690 None:intergenic 25.0%
! AATGTCAATATGATTCCTAT+CGG + chr1_2:56329002-56329021 Msa0078660:intron 25.0%
! CTTGATAAGAGTTTATAAAC+AGG - chr1_2:56329118-56329137 None:intergenic 25.0%
! AGTATAAATGCCAATTAGAT+AGG - chr1_2:56329144-56329163 None:intergenic 25.0%
! AATGTCAATATGATTCCTAT+CGG + chr1_2:56329002-56329021 Msa0078660:intron 25.0%
! CTTGATATGAGTTTATAAAC+AGG - chr1_2:56329361-56329380 None:intergenic 25.0%
! ACAAATGACATATTCACAAT+TGG + chr1_2:56329724-56329743 Msa0078660:intron 25.0%
!! ATAAACAAAAGCATAATAGG+TGG + chr1_2:56329937-56329956 Msa0078660:intron 25.0%
!! TAAACAAAAGCATAATAGGT+GGG + chr1_2:56329938-56329957 Msa0078660:intron 25.0%
! CCTTCATTCCATTTATAATT+TGG - chr1_2:56329984-56330003 None:intergenic 25.0%
! CCAAATTATAAATGGAATGA+AGG + chr1_2:56329981-56330000 Msa0078660:intron 25.0%
! GCATCCTATTAATAATATGT+TGG + chr1_2:56330270-56330289 Msa0078660:intron 25.0%
! AGAGAAAATTAAGGAAGAAA+GGG - chr1_2:56330398-56330417 None:intergenic 25.0%
! AAGAGAAAATTAAGGAAGAA+AGG - chr1_2:56330399-56330418 None:intergenic 25.0%
!! CTTCCTTAATTTTCTCTTAT+AGG + chr1_2:56330401-56330420 Msa0078660:intron 25.0%
! AAGCCTATAAGAGAAAATTA+AGG - chr1_2:56330407-56330426 None:intergenic 25.0%
! TCTAATGCTAGAATTCATTT+GGG + chr1_2:56330523-56330542 Msa0078660:intron 25.0%
!! TTTTTACCATACAACAAAGT+AGG - chr1_2:56330721-56330740 None:intergenic 25.0%
! TGCATATTAATGTATAACTG+CGG - chr1_2:56330747-56330766 None:intergenic 25.0%
! TAATATGCAAAATTAGTCCA+AGG + chr1_2:56330758-56330777 Msa0078660:intron 25.0%
! AAAATATTTCAAACTGGAGT+AGG - chr1_2:56330854-56330873 None:intergenic 25.0%
!!! GTTAACTTCCATTGTTTTTT+AGG + chr1_2:56331006-56331025 Msa0078660:intron 25.0%
! AACTTAACCCTAAAAAACAA+TGG - chr1_2:56331017-56331036 None:intergenic 25.0%
! TCATAATTCCTTGAATGATA+AGG + chr1_2:56331286-56331305 Msa0078660:three_prime_UTR 25.0%
! TAGATTCTTATAGATGCAAA+AGG + chr1_2:56331352-56331371 Msa0078660:three_prime_UTR 25.0%
! AGATTCTTATAGATGCAAAA+GGG + chr1_2:56331353-56331372 Msa0078660:three_prime_UTR 25.0%
CAAACACTAAAAGAAAACAC+AGG + chr1_2:56320340-56320359 Msa0078660:five_prime_UTR 30.0%
ACTAAAAGAAAACACAGGAT+AGG + chr1_2:56320345-56320364 Msa0078660:five_prime_UTR 30.0%
!!! TGTTTTTTTCCTCTCTTAGT+CGG + chr1_2:56320618-56320637 Msa0078660:five_prime_UTR 30.0%
TATGATGTGAAATGTGAGTA+TGG - chr1_2:56320669-56320688 None:intergenic 30.0%
! AACTCTCTATAACAGCTTTT+TGG - chr1_2:56321096-56321115 None:intergenic 30.0%
TGTATGTTTGGTATCACAAT+GGG - chr1_2:56321371-56321390 None:intergenic 30.0%
ATTGTGATACCAAACATACA+CGG + chr1_2:56321371-56321390 Msa0078660:intron 30.0%
GATGTGTAATAGTGGTATAA+CGG + chr1_2:56321717-56321736 Msa0078660:intron 30.0%
! ACTCAGTGTTGTTAAATAAC+TGG - chr1_2:56321750-56321769 None:intergenic 30.0%
TGTGGAACTTGATAAAATCT+AGG + chr1_2:56322071-56322090 Msa0078660:intron 30.0%
GTGGAACTTGATAAAATCTA+GGG + chr1_2:56322072-56322091 Msa0078660:intron 30.0%
TGGAACTTGATAAAATCTAG+GGG + chr1_2:56322073-56322092 Msa0078660:intron 30.0%
GCTTATTTGAGCTTATCTAT+TGG - chr1_2:56322335-56322354 None:intergenic 30.0%
TAGTTAGAGCATGTTTAGAT+TGG - chr1_2:56322357-56322376 None:intergenic 30.0%
AACATGCTCTAACTATAAAC+GGG + chr1_2:56322362-56322381 Msa0078660:intron 30.0%
AGGTTGTATTTCACTAAACT+TGG + chr1_2:56322543-56322562 Msa0078660:intron 30.0%
GGTTGTATTTCACTAAACTT+GGG + chr1_2:56322544-56322563 Msa0078660:intron 30.0%
TCTCCATAAGTTATGCTATA+GGG - chr1_2:56322930-56322949 None:intergenic 30.0%
ATCTCCATAAGTTATGCTAT+AGG - chr1_2:56322931-56322950 None:intergenic 30.0%
TATAGCATAACTTATGGAGA+TGG + chr1_2:56322930-56322949 Msa0078660:CDS 30.0%
!!! AAAATGATGCTGCTATTTTG+CGG - chr1_2:56323029-56323048 None:intergenic 30.0%
! CAAAATAGCAGCATCATTTT+TGG + chr1_2:56323029-56323048 Msa0078660:CDS 30.0%
! TTGTATGTTGTTGAGTTTTC+GGG + chr1_2:56323093-56323112 Msa0078660:intron 30.0%
TGTTGTTGAATTGAATTAGG+GGG + chr1_2:56323143-56323162 Msa0078660:intron 30.0%
CAGTTAATTCAAAAAGGCAA+CGG - chr1_2:56323220-56323239 None:intergenic 30.0%
CAAAACCAATTATTCCATCA+AGG - chr1_2:56323457-56323476 None:intergenic 30.0%
!! CTTGATGGAATAATTGGTTT+TGG + chr1_2:56323455-56323474 Msa0078660:CDS 30.0%
ACATACATATTTGGTACCAA+TGG - chr1_2:56323620-56323639 None:intergenic 30.0%
TTACATGACAACCAATATCA+AGG - chr1_2:56323670-56323689 None:intergenic 30.0%
!!! ATTTTATTTTTGGGAAGCCT+TGG + chr1_2:56323859-56323878 Msa0078660:intron 30.0%
!!! TATGCTGTTTTTTACACAAG+AGG - chr1_2:56323945-56323964 None:intergenic 30.0%
CTTGTGTAAAAAACAGCATA+AGG + chr1_2:56323945-56323964 Msa0078660:intron 30.0%
TTAATAGTGGTCATGAATCT+CGG - chr1_2:56324198-56324217 None:intergenic 30.0%
TATTAAAACCAACCACTGTA+GGG + chr1_2:56324212-56324231 Msa0078660:intron 30.0%
!! TTTCTGAAATATACCATCCA+TGG - chr1_2:56324354-56324373 None:intergenic 30.0%
TATTTCAGAAAAGAGAGAAG+AGG + chr1_2:56324363-56324382 Msa0078660:intron 30.0%
ATTTCAGAAAAGAGAGAAGA+GGG + chr1_2:56324364-56324383 Msa0078660:intron 30.0%
ACCTTTCATTTATTACTCCT+AGG - chr1_2:56324447-56324466 None:intergenic 30.0%
CAATACAGTAACTGATGTTA+AGG + chr1_2:56324484-56324503 Msa0078660:intron 30.0%
AGCTTAACTGCTACAATAAT+AGG - chr1_2:56324511-56324530 None:intergenic 30.0%
TTATTGTAGCAGTTAAGCTA+TGG + chr1_2:56324512-56324531 Msa0078660:intron 30.0%
GAGGTATATTCCAAAAATGA+GGG + chr1_2:56324548-56324567 Msa0078660:intron 30.0%
ATGTTAAGTGGAAATTTGAG+AGG + chr1_2:56324609-56324628 Msa0078660:intron 30.0%
TGTTAAGTGGAAATTTGAGA+GGG + chr1_2:56324610-56324629 Msa0078660:intron 30.0%
TCCTTTCATCTATTACTACT+GGG - chr1_2:56324637-56324656 None:intergenic 30.0%
!! GGAAGGCAAATTTTTGTTTA+TGG + chr1_2:56324696-56324715 Msa0078660:intron 30.0%
CTGTGAACATATGAGTATAT+TGG - chr1_2:56324824-56324843 None:intergenic 30.0%
CTTTGGCATTTCTATTATTG+TGG + chr1_2:56324876-56324895 Msa0078660:intron 30.0%
TATGTATTGAGGTAGATGTT+CGG - chr1_2:56324918-56324937 None:intergenic 30.0%
! TTTTCTGTAGTTCACTAGAA+GGG + chr1_2:56325304-56325323 Msa0078660:intron 30.0%
TCCATGAATATTCTTTCAGT+TGG + chr1_2:56325375-56325394 Msa0078660:intron 30.0%
ACCAACTGAAAGAATATTCA+TGG - chr1_2:56325379-56325398 None:intergenic 30.0%
!! TTGATATTCAGTTTAGCTCT+TGG + chr1_2:56325409-56325428 Msa0078660:intron 30.0%
!! TGATATTCAGTTTAGCTCTT+GGG + chr1_2:56325410-56325429 Msa0078660:intron 30.0%
!! CAAATACCTTTGGAATTAGT+TGG - chr1_2:56325627-56325646 None:intergenic 30.0%
!! TATTTCTTCTGGAGTACTTA+TGG + chr1_2:56325673-56325692 Msa0078660:intron 30.0%
! TTTAAATGTTTTCCGTATGC+TGG + chr1_2:56325760-56325779 Msa0078660:CDS 30.0%
!! TTCATTTTTCCTATTGGGTA+TGG + chr1_2:56325965-56325984 Msa0078660:intron 30.0%
!!! AGAGTGCTAATTCCTTTTTT+CGG + chr1_2:56326292-56326311 Msa0078660:intron 30.0%
AAATGAAAAGGACCGAAAAA+AGG - chr1_2:56326307-56326326 None:intergenic 30.0%
GCCCAAAAAAGAAAATGAAA+AGG - chr1_2:56326319-56326338 None:intergenic 30.0%
!! TCCATTTCCTTAGTTTGTTA+AGG + chr1_2:56326346-56326365 Msa0078660:intron 30.0%
!! CCATTTCCTTAGTTTGTTAA+GGG + chr1_2:56326347-56326366 Msa0078660:intron 30.0%
ATTACTCCCTTAACAAACTA+AGG - chr1_2:56326356-56326375 None:intergenic 30.0%
TCAAAATGTAGTTTGACAAC+TGG - chr1_2:56326661-56326680 None:intergenic 30.0%
! AGTTGTCAAACTACATTTTG+AGG + chr1_2:56326660-56326679 Msa0078660:CDS 30.0%
! GTTGTCAAACTACATTTTGA+GGG + chr1_2:56326661-56326680 Msa0078660:CDS 30.0%
TGACTATCTGTTCCAATATA+AGG + chr1_2:56326711-56326730 Msa0078660:CDS 30.0%
AAGTTCATACCACCTTATAT+TGG - chr1_2:56326726-56326745 None:intergenic 30.0%
ATATAACACACAAAACACCT+GGG - chr1_2:56326878-56326897 None:intergenic 30.0%
TTAACAAAGGATAGATCATC+AGG - chr1_2:56326967-56326986 None:intergenic 30.0%
TGATGATCTAAATTGCCATA+TGG + chr1_2:56327000-56327019 Msa0078660:intron 30.0%
ATTCCTCATATTGAACCAAA+TGG + chr1_2:56327276-56327295 Msa0078660:intron 30.0%
! ATTCCATTTGGTTCAATATG+AGG - chr1_2:56327282-56327301 None:intergenic 30.0%
AACGCGCAGATAAAAAAAAT+AGG - chr1_2:56327451-56327470 None:intergenic 30.0%
CACAAATAACACAGTTATCA+AGG - chr1_2:56327912-56327931 None:intergenic 30.0%
!!! TTTTTTGGTTCGTTGTATGA+TGG + chr1_2:56327982-56328001 Msa0078660:intron 30.0%
!! ATGTTGTGATGTATTTTAGG+AGG - chr1_2:56328153-56328172 None:intergenic 30.0%
! GTGATGTTGTGATGTATTTT+AGG - chr1_2:56328156-56328175 None:intergenic 30.0%
!! TTTGTAACAAGCTTTTTGAG+GGG - chr1_2:56328341-56328360 None:intergenic 30.0%
! CATTTGTAACAAGCTTTTTG+AGG - chr1_2:56328343-56328362 None:intergenic 30.0%
!!! ATGTTTTGTTGATTCCAAAG+AGG + chr1_2:56328433-56328452 Msa0078660:intron 30.0%
CAAAACATATAGAAGTTGAC+TGG - chr1_2:56328479-56328498 None:intergenic 30.0%
TTTGTTCTCTGATGAAAGAT+TGG + chr1_2:56328495-56328514 Msa0078660:intron 30.0%
!! TTATCACATTCTAGTTCCAT+AGG + chr1_2:56328546-56328565 Msa0078660:intron 30.0%
! TCAGGTTATTGTCTTTTCAT+GGG - chr1_2:56328720-56328739 None:intergenic 30.0%
!! TTCAGGTTATTGTCTTTTCA+TGG - chr1_2:56328721-56328740 None:intergenic 30.0%
AATGTCAATATGATTCCCAT+CGG + chr1_2:56328794-56328813 Msa0078660:intron 30.0%
! TCAGGTTATTGTCTTTTCAT+GGG - chr1_2:56328720-56328739 None:intergenic 30.0%
!! TTCAGGTTATTGTCTTTTCA+TGG - chr1_2:56328721-56328740 None:intergenic 30.0%
AGGAATCATATTGACATTGT+TGG - chr1_2:56329000-56329019 None:intergenic 30.0%
GTGATCCTTTGTAGAAATTT+GGG + chr1_2:56329046-56329065 Msa0078660:intron 30.0%
TGATCCTTTGTAGAAATTTG+GGG + chr1_2:56329047-56329066 Msa0078660:intron 30.0%
GATAAGAGTTTATAAACAGG+AGG - chr1_2:56329115-56329134 None:intergenic 30.0%
TATCAAGAGTCCTATCTAAT+TGG + chr1_2:56329131-56329150 Msa0078660:intron 30.0%
! TCAGGTTATTGTCTTTTCAT+GGG - chr1_2:56328720-56328739 None:intergenic 30.0%
!! TTCAGGTTATTGTCTTTTCA+TGG - chr1_2:56328721-56328740 None:intergenic 30.0%
AGGAATCATATTGACATTGT+TGG - chr1_2:56329000-56329019 None:intergenic 30.0%
GTGATCCTTTGTAGAAATTT+GGG + chr1_2:56329046-56329065 Msa0078660:intron 30.0%
TGATCCTTTGTAGAAATTTG+GGG + chr1_2:56329047-56329066 Msa0078660:intron 30.0%
GATATGAGTTTATAAACAGG+AGG - chr1_2:56329358-56329377 None:intergenic 30.0%
TCAAATGCATAAAAGGATGT+TGG - chr1_2:56329505-56329524 None:intergenic 30.0%
! CATATTCACAATTGGTGATA+AGG + chr1_2:56329732-56329751 Msa0078660:intron 30.0%
TTGAATGTTTAGATAGACAC+TGG - chr1_2:56329832-56329851 None:intergenic 30.0%
GCATGGTACCAAATTATAAA+TGG + chr1_2:56329973-56329992 Msa0078660:intron 30.0%
AGAAAATTAAGGAAGAAAGG+GGG - chr1_2:56330396-56330415 None:intergenic 30.0%
GAGAAAATTAAGGAAGAAAG+GGG - chr1_2:56330397-56330416 None:intergenic 30.0%
!! CTTTAAAATGTTGAGCCATT+TGG + chr1_2:56330424-56330443 Msa0078660:intron 30.0%
AGAAAAAGAGAGAGAAAATG+AGG - chr1_2:56330502-56330521 None:intergenic 30.0%
CTCTAATGCTAGAATTCATT+TGG + chr1_2:56330522-56330541 Msa0078660:intron 30.0%
AAAATCCTTCTCACAAGTAT+TGG + chr1_2:56330546-56330565 Msa0078660:intron 30.0%
CAGAATTATGAAAGGCTAAT+TGG - chr1_2:56330695-56330714 None:intergenic 30.0%
GTAGGAAACAGAATTATGAA+AGG - chr1_2:56330703-56330722 None:intergenic 30.0%
GTTATAAATTGATGCAACCT+TGG - chr1_2:56330778-56330797 None:intergenic 30.0%
AATGAAGAGGAAGTAATCTT+AGG - chr1_2:56330802-56330821 None:intergenic 30.0%
AGCTGCAAAATATTTCAAAC+TGG - chr1_2:56330860-56330879 None:intergenic 30.0%
!! TAAGATTCATGTGGATTAGA+TGG - chr1_2:56330984-56331003 None:intergenic 30.0%
TCTAATCCACATGAATCTTA+TGG + chr1_2:56330984-56331003 Msa0078660:intron 30.0%
AGTTAACCATAAGATTCATG+TGG - chr1_2:56330993-56331012 None:intergenic 30.0%
! CACTGTGTTATTGTTTCTTT+AGG + chr1_2:56331073-56331092 Msa0078660:intron 30.0%
! TCAGCTTCTACCTTTTTAAT+TGG + chr1_2:56331166-56331185 Msa0078660:CDS 30.0%
ATAAGAATCTATACGAGAAC+TGG - chr1_2:56331343-56331362 None:intergenic 30.0%
GATTCTTATAGATGCAAAAG+GGG + chr1_2:56331354-56331373 Msa0078660:three_prime_UTR 30.0%
CAATTACTTCACGATAAAGC+TGG - chr1_2:56320443-56320462 None:intergenic 35.0%
AGTAGAGTGAATGAATGAGT+GGG - chr1_2:56320591-56320610 None:intergenic 35.0%
! GAAATTTTGTGTGTTGCGAA+TGG + chr1_2:56320812-56320831 Msa0078660:CDS 35.0%
TGTTGCGAATGGAGATAATT+TGG + chr1_2:56320823-56320842 Msa0078660:CDS 35.0%
!! TGGAGATAATTTGGTGTTTC+AGG + chr1_2:56320832-56320851 Msa0078660:CDS 35.0%
!! TCATCCGTTGATTTCAATCT+TGG + chr1_2:56320923-56320942 Msa0078660:CDS 35.0%
ACCACCAAGATTGAAATCAA+CGG - chr1_2:56320930-56320949 None:intergenic 35.0%
! GATTTCAATCTTGGTGGTAA+TGG + chr1_2:56320932-56320951 Msa0078660:CDS 35.0%
! TGATCTACTCATCGGATTTT+TGG - chr1_2:56321145-56321164 None:intergenic 35.0%
GTGTATGTTTGGTATCACAA+TGG - chr1_2:56321372-56321391 None:intergenic 35.0%
!! TGCTGATTCAGTAATGAGAT+GGG - chr1_2:56321485-56321504 None:intergenic 35.0%
!! ATGCTGATTCAGTAATGAGA+TGG - chr1_2:56321486-56321505 None:intergenic 35.0%
AATCCATACCACTGAAATAG+CGG - chr1_2:56321655-56321674 None:intergenic 35.0%
ATGGATTCACAACAGCATAT+TGG + chr1_2:56321668-56321687 Msa0078660:intron 35.0%
CACTATTACACATCAGTACT+TGG - chr1_2:56321711-56321730 None:intergenic 35.0%
!! CAAGTACTGATGTGTAATAG+TGG + chr1_2:56321709-56321728 Msa0078660:intron 35.0%
! TCTCGCTGTGAAGATATTTT+AGG + chr1_2:56321869-56321888 Msa0078660:intron 35.0%
CTTATTTCCATAATCTCTCC+AGG - chr1_2:56322234-56322253 None:intergenic 35.0%
ATGGACATGTCATAACTCAT+AGG + chr1_2:56322267-56322286 Msa0078660:intron 35.0%
TAAGCACTTGTGAGATTGTT+TGG - chr1_2:56322310-56322329 None:intergenic 35.0%
ACATGCTCTAACTATAAACG+GGG + chr1_2:56322363-56322382 Msa0078660:intron 35.0%
! ATCTTGGTGTGAGGTTTATT+AGG - chr1_2:56322429-56322448 None:intergenic 35.0%
!!! CTTTTTTAGATCTTGGTGTG+AGG - chr1_2:56322438-56322457 None:intergenic 35.0%
TATTTCACTAAACTTGGGCT+TGG + chr1_2:56322549-56322568 Msa0078660:CDS 35.0%
!! TACTATGTCCAAGTTGATAC+AGG + chr1_2:56322588-56322607 Msa0078660:CDS 35.0%
TATCACTTCCTGTATCAACT+TGG - chr1_2:56322599-56322618 None:intergenic 35.0%
ATACAGGAAGTGATATTCTG+TGG + chr1_2:56322604-56322623 Msa0078660:CDS 35.0%
TACAGGAAGTGATATTCTGT+GGG + chr1_2:56322605-56322624 Msa0078660:CDS 35.0%
! AATGCATACATACACCGATT+TGG - chr1_2:56322668-56322687 None:intergenic 35.0%
! GTTGTTGTTGTTACAACAGA+TGG + chr1_2:56322785-56322804 Msa0078660:intron 35.0%
! TTTTGCTCTTCCACATATGA+TGG + chr1_2:56322870-56322889 Msa0078660:CDS 35.0%
CTCCATAAGTTATGCTATAG+GGG - chr1_2:56322929-56322948 None:intergenic 35.0%
AACTACTGGATACTATGTCA+GGG + chr1_2:56322959-56322978 Msa0078660:CDS 35.0%
!!! TGGAATAATTGGTTTTGGAC+AGG + chr1_2:56323460-56323479 Msa0078660:CDS 35.0%
AATATTTGCCATAGGGGAAT+TGG + chr1_2:56323571-56323590 Msa0078660:CDS 35.0%
! AATGGAGTTGTTCTGACTTT+TGG - chr1_2:56323602-56323621 None:intergenic 35.0%
AAAAGTCAGAACAACTCCAT+TGG + chr1_2:56323601-56323620 Msa0078660:CDS 35.0%
TTGATCTCATGCCTTGATAT+TGG + chr1_2:56323656-56323675 Msa0078660:intron 35.0%
TTGGTTGTCATGTAAATCCA+AGG + chr1_2:56323675-56323694 Msa0078660:intron 35.0%
TGGTTGTCATGTAAATCCAA+GGG + chr1_2:56323676-56323695 Msa0078660:intron 35.0%
GATCAATTGATCGTGAAATG+AGG - chr1_2:56323756-56323775 None:intergenic 35.0%
GTTGTTGTCACATGACTAAA+AGG + chr1_2:56323894-56323913 Msa0078660:intron 35.0%
CATACAATACACCAATTGGT+GGG + chr1_2:56323971-56323990 Msa0078660:intron 35.0%
CAATAAAAAAAATGGCAGCC+CGG - chr1_2:56324036-56324055 None:intergenic 35.0%
!!! ACAGTGGTTGGTTTTAATAG+TGG - chr1_2:56324211-56324230 None:intergenic 35.0%
CTATTAAAACCAACCACTGT+AGG + chr1_2:56324211-56324230 Msa0078660:intron 35.0%
AAATATACCATCCATGGCTT+CGG - chr1_2:56324348-56324367 None:intergenic 35.0%
ACACGTGAAAGAGATTTAGT+GGG + chr1_2:56324387-56324406 Msa0078660:intron 35.0%
GGAGAGATGTTTATACTAAC+TGG + chr1_2:56324408-56324427 Msa0078660:intron 35.0%
ATACTAACTGGAAATCGAGT+AGG + chr1_2:56324420-56324439 Msa0078660:intron 35.0%
TACTAACTGGAAATCGAGTA+GGG + chr1_2:56324421-56324440 Msa0078660:intron 35.0%
GCCTAGGAGTAATAAATGAA+AGG + chr1_2:56324443-56324462 Msa0078660:intron 35.0%
! GGAGGTATATTCCAAAAATG+AGG + chr1_2:56324547-56324566 Msa0078660:intron 35.0%
ATTCCAAAAATGAGGGAAAG+AGG + chr1_2:56324555-56324574 Msa0078660:intron 35.0%
TCCCAGTAGTAATAGATGAA+AGG + chr1_2:56324633-56324652 Msa0078660:intron 35.0%
CTCCTTTCATCTATTACTAC+TGG - chr1_2:56324638-56324657 None:intergenic 35.0%
CAGTAGTAATAGATGAAAGG+AGG + chr1_2:56324636-56324655 Msa0078660:intron 35.0%
TAGTAATAGATGAAAGGAGG+TGG + chr1_2:56324639-56324658 Msa0078660:intron 35.0%
!!! TTTTTTTGTCACACCCTTGT+TGG + chr1_2:56325176-56325195 Msa0078660:intron 35.0%
AGTGAACTACAGAAAACCAA+CGG - chr1_2:56325300-56325319 None:intergenic 35.0%
! GTTTTCTGTAGTTCACTAGA+AGG + chr1_2:56325303-56325322 Msa0078660:intron 35.0%
! GTTTTCAAAGCAGTCTAAGA+TGG - chr1_2:56325353-56325372 None:intergenic 35.0%
! AGTCTGTTGTTGACTATTGT+AGG + chr1_2:56325455-56325474 Msa0078660:intron 35.0%
! GTCTGTTGTTGACTATTGTA+GGG + chr1_2:56325456-56325475 Msa0078660:intron 35.0%
CCAGAATCAAATATATCCGA+GGG - chr1_2:56325538-56325557 None:intergenic 35.0%
TCCAGAATCAAATATATCCG+AGG - chr1_2:56325539-56325558 None:intergenic 35.0%
! ATTTGATTCTGGAAATGGGA+AGG + chr1_2:56325546-56325565 Msa0078660:CDS 35.0%
! TTTGATTCTGGAAATGGGAA+GGG + chr1_2:56325547-56325566 Msa0078660:CDS 35.0%
CTATGACCAACTAATTCCAA+AGG + chr1_2:56325618-56325637 Msa0078660:CDS 35.0%
TAATTTCAATTCAGGCTGAC+GGG - chr1_2:56325722-56325741 None:intergenic 35.0%
CTAATTTCAATTCAGGCTGA+CGG - chr1_2:56325723-56325742 None:intergenic 35.0%
ATGCGAGCTAATTTCAATTC+AGG - chr1_2:56325730-56325749 None:intergenic 35.0%
ATTGAAATTAGCTCGCATTG+AGG + chr1_2:56325732-56325751 Msa0078660:CDS 35.0%
! TTAACTTTTGCACTTGAGCA+AGG + chr1_2:56326169-56326188 Msa0078660:intron 35.0%
CCCTTAACAAACTAAGGAAA+TGG - chr1_2:56326350-56326369 None:intergenic 35.0%
TTGTTAAGGGAGTAATTGAG+TGG + chr1_2:56326360-56326379 Msa0078660:intron 35.0%
TGTTAAGGGAGTAATTGAGT+GGG + chr1_2:56326361-56326380 Msa0078660:intron 35.0%
TATTGGAACAGATAGTCATG+AGG - chr1_2:56326709-56326728 None:intergenic 35.0%
CTATCTGTTCCAATATAAGG+TGG + chr1_2:56326714-56326733 Msa0078660:CDS 35.0%
GATATAACACACAAAACACC+TGG - chr1_2:56326879-56326898 None:intergenic 35.0%
TCGAAGTCAAGAGTTAACAA+AGG - chr1_2:56326980-56326999 None:intergenic 35.0%
TAGCTATTGAGCATTCCATT+TGG - chr1_2:56327294-56327313 None:intergenic 35.0%
GAAGTTGTCCCAACAAAAAT+AGG - chr1_2:56327739-56327758 None:intergenic 35.0%
!!! TGTTTTTGGTCTTTTGTCAC+TGG + chr1_2:56327849-56327868 Msa0078660:intron 35.0%
!! AGGTCTACTGGTTCATAATT+TGG + chr1_2:56327884-56327903 Msa0078660:intron 35.0%
!!! CTGCACTTGCTTTGTTTTTT+TGG + chr1_2:56327967-56327986 Msa0078660:intron 35.0%
ATTACCAAAATGAGCCAAAG+TGG - chr1_2:56328032-56328051 None:intergenic 35.0%
TATCTAACTTTGTGGGATCA+TGG + chr1_2:56328065-56328084 Msa0078660:intron 35.0%
CCAAGTTAGAGATAAAGAGA+GGG - chr1_2:56328128-56328147 None:intergenic 35.0%
TTCAGAGATAGAGATGACAA+AGG - chr1_2:56328228-56328247 None:intergenic 35.0%
TATCGTCACCAAATCTTTGT+GGG - chr1_2:56328382-56328401 None:intergenic 35.0%
ATATCGTCACCAAATCTTTG+TGG - chr1_2:56328383-56328402 None:intergenic 35.0%
ATTAGAGAGAAGATCCTCTT+TGG - chr1_2:56328450-56328469 None:intergenic 35.0%
TTTCAGTGAAATTGGTCCTA+TGG - chr1_2:56328565-56328584 None:intergenic 35.0%
GAGTTGCATTTCAGTGAAAT+TGG - chr1_2:56328573-56328592 None:intergenic 35.0%
! TGGGTGGAAGTATAATTTAG+TGG - chr1_2:56328701-56328720 None:intergenic 35.0%
GGGAATCATATTGACATTGT+TGG - chr1_2:56328792-56328811 None:intergenic 35.0%
GTAAGCAGGTTGTTAATACA+CGG - chr1_2:56328879-56328898 None:intergenic 35.0%
! TGGGTGGAAGTATAATTTAG+TGG - chr1_2:56328701-56328720 None:intergenic 35.0%
GGTGATCCTTTGTAGAAATT+TGG + chr1_2:56329045-56329064 Msa0078660:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_2:56329071-56329090 Msa0078660:intron 35.0%
GGTGATCCTTTGTAGAAATT+TGG + chr1_2:56329045-56329064 Msa0078660:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG + chr1_2:56329071-56329090 Msa0078660:intron 35.0%
AAAGCCAACAAAAGGCAATT+AGG + chr1_2:56329420-56329439 Msa0078660:intron 35.0%
AAGCCAACAAAAGGCAATTA+GGG + chr1_2:56329421-56329440 Msa0078660:intron 35.0%
CTCATGATAGTTATTGGCAT+CGG - chr1_2:56329540-56329559 None:intergenic 35.0%
TCTCTCCTCATGATAGTTAT+TGG - chr1_2:56329546-56329565 None:intergenic 35.0%
GAAAAACTACCTTGTCACAT+CGG + chr1_2:56329567-56329586 Msa0078660:intron 35.0%
AGGAGATATCGAAAATTGCT+CGG - chr1_2:56329640-56329659 None:intergenic 35.0%
! TTTTAGTGATGAAGCACAGT+TGG - chr1_2:56329696-56329715 None:intergenic 35.0%
CTCACTATAATCTTGACCAT+AGG + chr1_2:56329756-56329775 Msa0078660:intron 35.0%
AATGTTTAGATAGACACTGG+TGG - chr1_2:56329829-56329848 None:intergenic 35.0%
TAATCCATGACTGATGAGAT+GGG - chr1_2:56329857-56329876 None:intergenic 35.0%
ATAATCCATGACTGATGAGA+TGG - chr1_2:56329858-56329877 None:intergenic 35.0%
! TGTGTTTCAGCTCATGTTTT+AGG - chr1_2:56330088-56330107 None:intergenic 35.0%
AAAACATGAGCTGAAACACA+TGG + chr1_2:56330088-56330107 Msa0078660:intron 35.0%
!! TTGGTGTCACTTATGAATGA+CGG - chr1_2:56330120-56330139 None:intergenic 35.0%
TGACACCAAACCTATTCAAA+GGG + chr1_2:56330131-56330150 Msa0078660:intron 35.0%
TATACAGTACCATGATTGAG+GGG - chr1_2:56330250-56330269 None:intergenic 35.0%
CTATACAGTACCATGATTGA+GGG - chr1_2:56330251-56330270 None:intergenic 35.0%
TGCTCAAGGTTTAACACAAA+TGG - chr1_2:56330317-56330336 None:intergenic 35.0%
CTTGTACGATCTTGAGAATA+TGG + chr1_2:56330638-56330657 Msa0078660:CDS 35.0%
GATCTTGAGAATATGGCTAT+TGG + chr1_2:56330645-56330664 Msa0078660:CDS 35.0%
TTGAGAATATGGCTATTGGA+TGG + chr1_2:56330649-56330668 Msa0078660:CDS 35.0%
! CTGTTTCCTACTTTGTTGTA+TGG + chr1_2:56330712-56330731 Msa0078660:intron 35.0%
! TGAAGTTGGTTCAAATGAAG+AGG - chr1_2:56330815-56330834 None:intergenic 35.0%
ACTGGAATAGTACATACAGT+GGG + chr1_2:56331127-56331146 Msa0078660:CDS 35.0%
GAAATTTGAGTCCACTGAGT+GGG + chr1_2:56320380-56320399 Msa0078660:five_prime_UTR 40.0%
!! CTTCACGATAAAGCTGGTTT+TGG - chr1_2:56320437-56320456 None:intergenic 40.0%
CAGTAGAGTGAATGAATGAG+TGG - chr1_2:56320592-56320611 None:intergenic 40.0%
GATGTGAAATGTGAGTATGG+AGG - chr1_2:56320666-56320685 None:intergenic 40.0%
!! TCCGTTGATTTCAATCTTGG+TGG + chr1_2:56320926-56320945 Msa0078660:CDS 40.0%
AATGGTCTTCCTACTAGAAC+TGG + chr1_2:56320950-56320969 Msa0078660:CDS 40.0%
ATGGTCTTCCTACTAGAACT+GGG + chr1_2:56320951-56320970 Msa0078660:CDS 40.0%
ATGCTGCATGATCTACTCAT+CGG - chr1_2:56321153-56321172 None:intergenic 40.0%
AACTTCACTCCGTGTATGTT+TGG - chr1_2:56321383-56321402 None:intergenic 40.0%
! GAGTGAAGTTTGAAGTGAAG+AGG + chr1_2:56321393-56321412 Msa0078660:intron 40.0%
! GTTTGAAGTGAAGAGGAAGA+TGG + chr1_2:56321400-56321419 Msa0078660:intron 40.0%
AAGTGAAGAGGAAGATGGAA+AGG + chr1_2:56321405-56321424 Msa0078660:intron 40.0%
TTACCTAGGTAGTAGGGTTT+AGG + chr1_2:56321446-56321465 Msa0078660:intron 40.0%
TACCTAGGTAGTAGGGTTTA+GGG + chr1_2:56321447-56321466 Msa0078660:intron 40.0%
! GCTGATTCAGTAATGAGATG+GGG - chr1_2:56321484-56321503 None:intergenic 40.0%
! AGCGGTGACTTTTTGCATAT+TGG - chr1_2:56321637-56321656 None:intergenic 40.0%
! AAAAGTCACCGCTATTTCAG+TGG + chr1_2:56321644-56321663 Msa0078660:intron 40.0%
!!! ATATTGGCTTTTGTCGTGGT+TGG + chr1_2:56321684-56321703 Msa0078660:intron 40.0%
TAGGGGATTAAGACTGTGTT+CGG + chr1_2:56322090-56322109 Msa0078660:intron 40.0%
GGTTGCATGAGCTAAATCAT+GGG + chr1_2:56322384-56322403 Msa0078660:intron 40.0%
TGGACATAGTAGTCCTTCTT+TGG - chr1_2:56322579-56322598 None:intergenic 40.0%
TGTCCTACGAAAAGCCAAAT+CGG + chr1_2:56322651-56322670 Msa0078660:CDS 40.0%
TTGACTCTCTATGACCCAAA+GGG + chr1_2:56322810-56322829 Msa0078660:CDS 40.0%
CTGAAGTATGAGATCCCTTT+GGG - chr1_2:56322827-56322846 None:intergenic 40.0%
! TCTGAAGTATGAGATCCCTT+TGG - chr1_2:56322828-56322847 None:intergenic 40.0%
TAAGTTATGCTATAGGGGCA+GGG - chr1_2:56322924-56322943 None:intergenic 40.0%
ATAAGTTATGCTATAGGGGC+AGG - chr1_2:56322925-56322944 None:intergenic 40.0%
TGCCCCTATAGCATAACTTA+TGG + chr1_2:56322924-56322943 Msa0078660:CDS 40.0%
CAACTACTGGATACTATGTC+AGG + chr1_2:56322958-56322977 Msa0078660:CDS 40.0%
!! GGGACTATCTTACTTTTGAC+CGG + chr1_2:56322979-56322998 Msa0078660:CDS 40.0%
!! CTTACTTTTGACCGGATCAA+CGG + chr1_2:56322987-56323006 Msa0078660:CDS 40.0%
TATGGAGATTTCCGTTGATC+CGG - chr1_2:56323001-56323020 None:intergenic 40.0%
!! TCTCATGAGTGGGTTATCTT+CGG + chr1_2:56323179-56323198 Msa0078660:intron 40.0%
ACTTAAACTCGCCACTTGAA+TGG - chr1_2:56323265-56323284 None:intergenic 40.0%
ATTCAAGTGGCGAGTTTAAG+TGG + chr1_2:56323264-56323283 Msa0078660:intron 40.0%
TTCAAGTGGCGAGTTTAAGT+GGG + chr1_2:56323265-56323284 Msa0078660:intron 40.0%
TATTCCATCAAGGGCTTCTT+CGG - chr1_2:56323447-56323466 None:intergenic 40.0%
GAAGCCCTTGATGGAATAAT+TGG + chr1_2:56323449-56323468 Msa0078660:CDS 40.0%
! GTGGTGGAATATTTGCCATA+GGG + chr1_2:56323564-56323583 Msa0078660:CDS 40.0%
TGGTGGAATATTTGCCATAG+GGG + chr1_2:56323565-56323584 Msa0078660:CDS 40.0%
GTCACATGACTAAAAGGTCA+CGG + chr1_2:56323900-56323919 Msa0078660:intron 40.0%
TTACACAAGAGGCTGTTTAC+AGG - chr1_2:56323934-56323953 None:intergenic 40.0%
GCTGCATACAATACACCAAT+TGG + chr1_2:56323967-56323986 Msa0078660:intron 40.0%
GCATACAATACACCAATTGG+TGG + chr1_2:56323970-56323989 Msa0078660:intron 40.0%
!!! CGGGCTGCCATTTTTTTTAT+TGG + chr1_2:56324034-56324053 Msa0078660:intron 40.0%
TCTTTGATGGGAATCCTCAT+AGG + chr1_2:56324070-56324089 Msa0078660:intron 40.0%
CTAACTAGCAATCTTAGCCA+AGG - chr1_2:56324112-56324131 None:intergenic 40.0%
CTTGGCTAAGATTGCTAGTT+AGG + chr1_2:56324110-56324129 Msa0078660:intron 40.0%
AGCTTTACCTGCAATGTCAA+GGG - chr1_2:56324173-56324192 None:intergenic 40.0%
AAGCTTTACCTGCAATGTCA+AGG - chr1_2:56324174-56324193 None:intergenic 40.0%
ATAGTGCAGCATTTAAGCCA+CGG + chr1_2:56324321-56324340 Msa0078660:intron 40.0%
AATATACCATCCATGGCTTC+GGG - chr1_2:56324347-56324366 None:intergenic 40.0%
GACACGTGAAAGAGATTTAG+TGG + chr1_2:56324386-56324405 Msa0078660:intron 40.0%
AATATACCTCCAACTCCTTG+GGG - chr1_2:56324538-56324557 None:intergenic 40.0%
GAATATACCTCCAACTCCTT+GGG - chr1_2:56324539-56324558 None:intergenic 40.0%
! GTTCCTCTTTCCCTCATTTT+TGG - chr1_2:56324561-56324580 None:intergenic 40.0%
AACACATGGAGTAGACTTAG+TGG + chr1_2:56324578-56324597 Msa0078660:intron 40.0%
ACACATGGAGTAGACTTAGT+GGG + chr1_2:56324579-56324598 Msa0078660:intron 40.0%
TTCCTCCATATTCATGTCTC+TGG - chr1_2:56324676-56324695 None:intergenic 40.0%
AGAGACATGAATATGGAGGA+AGG + chr1_2:56324675-56324694 Msa0078660:intron 40.0%
ACATGAATATGGAGGAAGGA+AGG + chr1_2:56324679-56324698 Msa0078660:intron 40.0%
TTGTTTATGGGTATATGCGC+TGG + chr1_2:56324709-56324728 Msa0078660:intron 40.0%
TGTTTATGGGTATATGCGCT+GGG + chr1_2:56324710-56324729 Msa0078660:intron 40.0%
ATGCCAAAGAAGATGCGAAA+GGG - chr1_2:56324865-56324884 None:intergenic 40.0%
AATGCCAAAGAAGATGCGAA+AGG - chr1_2:56324866-56324885 None:intergenic 40.0%
TATATGCATGATAGCTCCGT+TGG + chr1_2:56325281-56325300 Msa0078660:intron 40.0%
CAATAGTCAACAACAGACTG+CGG - chr1_2:56325454-56325473 None:intergenic 40.0%
TTGTAGGGCACATTACAATG+TGG + chr1_2:56325471-56325490 Msa0078660:intron 40.0%
CCCTCGGATATATTTGATTC+TGG + chr1_2:56325535-56325554 Msa0078660:CDS 40.0%
!! GATTGATAGTGGAACAACCT+TGG + chr1_2:56325576-56325595 Msa0078660:CDS 40.0%
TATGACAGGAAGATAAGCCA+AGG - chr1_2:56325596-56325615 None:intergenic 40.0%
AGTTGGTCATAGACTATGAC+AGG - chr1_2:56325610-56325629 None:intergenic 40.0%
ATGTTGTCACCATACCCAAT+AGG - chr1_2:56325977-56325996 None:intergenic 40.0%
!!! TCCAATATTTTGAAGCCTGC+TGG + chr1_2:56326060-56326079 Msa0078660:intron 40.0%
TCCAGCAGGCTTCAAAATAT+TGG - chr1_2:56326064-56326083 None:intergenic 40.0%
!!! AATATTTTGAAGCCTGCTGG+AGG + chr1_2:56326063-56326082 Msa0078660:intron 40.0%
! ACTAATCTTTTTCCTCCAGC+AGG - chr1_2:56326078-56326097 None:intergenic 40.0%
GACATATGACAGTAGCAAGT+AGG + chr1_2:56326114-56326133 Msa0078660:intron 40.0%
TCAACACTGCAAGGTTACAA+CGG - chr1_2:56326628-56326647 None:intergenic 40.0%
! TTGTAACCTTGCAGTGTTGA+TGG + chr1_2:56326628-56326647 Msa0078660:intron 40.0%
CAGGCTAGAGGACAAAATTA+AGG - chr1_2:56327131-56327150 None:intergenic 40.0%
! CTTAATTTTGTCCTCTAGCC+TGG + chr1_2:56327129-56327148 Msa0078660:intron 40.0%
! TTTTCTGCCAGCCAATACAT+CGG - chr1_2:56327158-56327177 None:intergenic 40.0%
! GAAAAGTGTGACCCAAACTA+AGG + chr1_2:56327173-56327192 Msa0078660:CDS 40.0%
GTCCTTTCCATCCTTAGTTT+GGG - chr1_2:56327187-56327206 None:intergenic 40.0%
TGTCCTTTCCATCCTTAGTT+TGG - chr1_2:56327188-56327207 None:intergenic 40.0%
! TCAACTTGGTATCTAGAGCA+AGG + chr1_2:56327417-56327436 Msa0078660:intron 40.0%
!!! TCGCCTTCTCCTATTTTTGT+TGG + chr1_2:56327727-56327746 Msa0078660:intron 40.0%
!!! CGCCTTCTCCTATTTTTGTT+GGG + chr1_2:56327728-56327747 Msa0078660:intron 40.0%
GTCCCAACAAAAATAGGAGA+AGG - chr1_2:56327733-56327752 None:intergenic 40.0%
GATCACAAACGTTCCAACAA+CGG - chr1_2:56327948-56327967 None:intergenic 40.0%
TGGCTGGAGATGAAATGTAT+TGG - chr1_2:56328012-56328031 None:intergenic 40.0%
TGGGATCATGGAATTTAGAC+TGG + chr1_2:56328077-56328096 Msa0078660:intron 40.0%
TGGAATTTAGACTGGTGCTT+CGG + chr1_2:56328085-56328104 Msa0078660:intron 40.0%
CCCTCTCTTTATCTCTAACT+TGG + chr1_2:56328125-56328144 Msa0078660:intron 40.0%
GCCAAGTTAGAGATAAAGAG+AGG - chr1_2:56328129-56328148 None:intergenic 40.0%
! AATACCAGTAACTTGTGCCT+TGG - chr1_2:56328193-56328212 None:intergenic 40.0%
AAGGCACAAGTTACTGGTAT+TGG + chr1_2:56328192-56328211 Msa0078660:intron 40.0%
ATCGTCACCAAATCTTTGTG+GGG - chr1_2:56328381-56328400 None:intergenic 40.0%
TCTCTGATGAAAGATTGGAC+TGG + chr1_2:56328500-56328519 Msa0078660:intron 40.0%
AAGTACAAAGGCTGAATACC+GGG - chr1_2:56328646-56328665 None:intergenic 40.0%
CAAGTACAAAGGCTGAATAC+CGG - chr1_2:56328647-56328666 None:intergenic 40.0%
TAATACACGGCCAAGTACAA+AGG - chr1_2:56328658-56328677 None:intergenic 40.0%
! GGTTATTGTCTTTTCATGGG+TGG - chr1_2:56328717-56328736 None:intergenic 40.0%
TTAGTGGAAGAGTAGTAAGC+AGG - chr1_2:56328685-56328704 None:intergenic 40.0%
! GGTTATTGTCTTTTCATGGG+TGG - chr1_2:56328717-56328736 None:intergenic 40.0%
CCAATTGAACAGTAGCTTTC+AGG - chr1_2:56328966-56328985 None:intergenic 40.0%
CCTGAAAGCTACTGTTCAAT+TGG + chr1_2:56328963-56328982 Msa0078660:intron 40.0%
TAGGCCCCAAATTTCTACAA+AGG - chr1_2:56329054-56329073 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_2:56329073-56329092 None:intergenic 40.0%
! GGTTATTGTCTTTTCATGGG+TGG - chr1_2:56328717-56328736 None:intergenic 40.0%
CCAATTGAACAGTAGCTTTC+AGG - chr1_2:56328966-56328985 None:intergenic 40.0%
CCTGAAAGCTACTGTTCAAT+TGG + chr1_2:56328963-56328982 Msa0078660:intron 40.0%
TAGGCCCCAAATTTCTACAA+AGG - chr1_2:56329054-56329073 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - chr1_2:56329073-56329092 None:intergenic 40.0%
AGAGTCCTATCTAACCAATG+TGG + chr1_2:56329379-56329398 Msa0078660:intron 40.0%
GAGTCCTATCTAACCAATGT+GGG + chr1_2:56329380-56329399 Msa0078660:intron 40.0%
! TAGTCCCACATTGGTTAGAT+AGG - chr1_2:56329387-56329406 None:intergenic 40.0%
!!! TTGCCTTTTGTTGGCTTTGA+GGG - chr1_2:56329418-56329437 None:intergenic 40.0%
!!! ATTGCCTTTTGTTGGCTTTG+AGG - chr1_2:56329419-56329438 None:intergenic 40.0%
AGCCAACAAAAGGCAATTAG+GGG + chr1_2:56329422-56329441 Msa0078660:intron 40.0%
! TTCCCCTAATTGCCTTTTGT+TGG - chr1_2:56329427-56329446 None:intergenic 40.0%
TTAGGGGAAGATCGCAATAA+AGG + chr1_2:56329438-56329457 Msa0078660:intron 40.0%
CGATGCCAATAACTATCATG+AGG + chr1_2:56329538-56329557 Msa0078660:intron 40.0%
TGAACTATCTCACTGTGATC+AGG - chr1_2:56329612-56329631 None:intergenic 40.0%
! TGTTTTGCATGGTGAGTTAG+AGG - chr1_2:56329660-56329679 None:intergenic 40.0%
TGGATTATCTCCACACTGAA+TGG + chr1_2:56329870-56329889 Msa0078660:intron 40.0%
GGATTATCTCCACACTGAAT+GGG + chr1_2:56329871-56329890 Msa0078660:intron 40.0%
CTCGATTCATAACATAGCTC+AGG - chr1_2:56329903-56329922 None:intergenic 40.0%
GTAAAATCAGCAGACGATGA+TGG + chr1_2:56330040-56330059 Msa0078660:intron 40.0%
GTGACACCAAACCTATTCAA+AGG + chr1_2:56330130-56330149 Msa0078660:intron 40.0%
GACACCAAACCTATTCAAAG+GGG + chr1_2:56330132-56330151 Msa0078660:intron 40.0%
ATACAGTACCATGATTGAGG+GGG - chr1_2:56330249-56330268 None:intergenic 40.0%
GCTATACAGTACCATGATTG+AGG - chr1_2:56330252-56330271 None:intergenic 40.0%
GAAAAAAACGCTTGTGAGAC+GGG - chr1_2:56330374-56330393 None:intergenic 40.0%
GGAAAAAAACGCTTGTGAGA+CGG - chr1_2:56330375-56330394 None:intergenic 40.0%
GAGAGAGAAAATGAGGATCA+AGG - chr1_2:56330495-56330514 None:intergenic 40.0%
CACATCCAATACTTGTGAGA+AGG - chr1_2:56330554-56330573 None:intergenic 40.0%
TCAAACTGGAGTAGGTATAG+AGG - chr1_2:56330846-56330865 None:intergenic 40.0%
ATAACAGAAGAGGCTTCGTT+TGG - chr1_2:56330956-56330975 None:intergenic 40.0%
CTCTTCCAGCATTAAAGTGA+AGG + chr1_2:56331096-56331115 Msa0078660:CDS 40.0%
TGCATCCTTCACTTTAATGC+TGG - chr1_2:56331104-56331123 None:intergenic 40.0%
GACTGGAATAGTACATACAG+TGG + chr1_2:56331126-56331145 Msa0078660:CDS 40.0%
ACTGCACACCTTATCATTCA+AGG - chr1_2:56331297-56331316 None:intergenic 40.0%
CGAAATTTGAGTCCACTGAG+TGG + chr1_2:56320379-56320398 Msa0078660:five_prime_UTR 45.0%
CAAGCTTAACCGACTAAGAG+AGG - chr1_2:56320630-56320649 None:intergenic 45.0%
CGTCGGAAAACGAGTTTAAG+TGG + chr1_2:56320860-56320879 Msa0078660:CDS 45.0%
GAGAGGTTACCTAGGTAGTA+GGG + chr1_2:56321440-56321459 Msa0078660:intron 45.0%
ACCTAGGTAGTAGGGTTTAG+GGG + chr1_2:56321448-56321467 Msa0078660:intron 45.0%
! TCACCGCTATTTCAGTGGTA+TGG + chr1_2:56321649-56321668 Msa0078660:intron 45.0%
!!! CAGCATATTGGCTTTTGTCG+TGG + chr1_2:56321680-56321699 Msa0078660:intron 45.0%
!! GCTGTTTTCATAAGCTGTCC+TGG + chr1_2:56322213-56322232 Msa0078660:intron 45.0%
AAGCTGTCCTGGAGAGATTA+TGG + chr1_2:56322224-56322243 Msa0078660:intron 45.0%
GGGTTGCATGAGCTAAATCA+TGG + chr1_2:56322383-56322402 Msa0078660:intron 45.0%
!!! ACACCGATTTGGCTTTTCGT+AGG - chr1_2:56322657-56322676 None:intergenic 45.0%
CTTGACTCTCTATGACCCAA+AGG + chr1_2:56322809-56322828 Msa0078660:CDS 45.0%
AGGAATCGGACCATCATATG+TGG - chr1_2:56322883-56322902 None:intergenic 45.0%
ACATATGATGGTCCGATTCC+TGG + chr1_2:56322882-56322901 Msa0078660:CDS 45.0%
ACCCACAGAGATGCAAAAGA+GGG - chr1_2:56323370-56323389 None:intergenic 45.0%
GCTGTACAATCTGGCACATT+GGG + chr1_2:56323413-56323432 Msa0078660:CDS 45.0%
CACTGCCTTGACAATATTCG+TGG + chr1_2:56323542-56323561 Msa0078660:CDS 45.0%
TGCCTTGACAATATTCGTGG+TGG + chr1_2:56323545-56323564 Msa0078660:CDS 45.0%
CACCACCACGAATATTGTCA+AGG - chr1_2:56323550-56323569 None:intergenic 45.0%
CTTGACAATATTCGTGGTGG+TGG + chr1_2:56323548-56323567 Msa0078660:CDS 45.0%
!! GGTGGTGGAATATTTGCCAT+AGG + chr1_2:56323563-56323582 Msa0078660:CDS 45.0%
ATTTGCCATAGGGGAATTGG+TGG + chr1_2:56323574-56323593 Msa0078660:CDS 45.0%
GATGGGAATCCTCATAGGTA+TGG + chr1_2:56324075-56324094 Msa0078660:intron 45.0%
AACTTGCAGCCATACCTATG+AGG - chr1_2:56324087-56324106 None:intergenic 45.0%
GTATGGCTGCAAGTTAACCT+TGG + chr1_2:56324092-56324111 Msa0078660:intron 45.0%
TTAGGTAAAGCCGTCTTCAG+AGG + chr1_2:56324128-56324147 Msa0078660:intron 45.0%
! TAGAACTACGCCTCTGAAGA+CGG - chr1_2:56324141-56324160 None:intergenic 45.0%
! TCTTCAGAGGCGTAGTTCTA+GGG + chr1_2:56324141-56324160 Msa0078660:intron 45.0%
GTTCATACCCTTGACATTGC+AGG + chr1_2:56324163-56324182 Msa0078660:intron 45.0%
AAATCTAGCCCTACAGTGGT+TGG - chr1_2:56324223-56324242 None:intergenic 45.0%
ATGCAAATCTAGCCCTACAG+TGG - chr1_2:56324227-56324246 None:intergenic 45.0%
AATGAAAGGTGACCAGACTC+AGG + chr1_2:56324457-56324476 Msa0078660:intron 45.0%
GGAATATACCTCCAACTCCT+TGG - chr1_2:56324540-56324559 None:intergenic 45.0%
ATGAGGGAAAGAGGAACACA+TGG + chr1_2:56324564-56324583 Msa0078660:intron 45.0%
GTGGGAGAGACAATGTTAAG+TGG + chr1_2:56324597-56324616 Msa0078660:intron 45.0%
GAAAGGAGGTGGTTATGAAG+AGG + chr1_2:56324650-56324669 Msa0078660:intron 45.0%
AGAGGCCAGAGACATGAATA+TGG + chr1_2:56324668-56324687 Msa0078660:intron 45.0%
ACTCCCTTTCGCATCTTCTT+TGG + chr1_2:56324859-56324878 Msa0078660:intron 45.0%
TGATGTTCTACAGCTTCCCT+CGG + chr1_2:56325519-56325538 Msa0078660:CDS 45.0%
! AAGGGCACAGTGATTGATAG+TGG + chr1_2:56325565-56325584 Msa0078660:CDS 45.0%
ATGGCGTACTTTCCAGCATA+CGG - chr1_2:56325775-56325794 None:intergenic 45.0%
CAGAGAATCAAGTGCACTTG+TGG - chr1_2:56326576-56326595 None:intergenic 45.0%
CACAAGTGCACTTGATTCTC+TGG + chr1_2:56326574-56326593 Msa0078660:intron 45.0%
GCACTTGATTCTCTGGCATA+TGG + chr1_2:56326581-56326600 Msa0078660:intron 45.0%
!! TAACCTTGCAGTGTTGATGG+TGG + chr1_2:56326631-56326650 Msa0078660:intron 45.0%
AATCCACCATCAACACTGCA+AGG - chr1_2:56326637-56326656 None:intergenic 45.0%
AGTGTGACCCAAACTAAGGA+TGG + chr1_2:56327177-56327196 Msa0078660:CDS 45.0%
GACCCAAACTAAGGATGGAA+AGG + chr1_2:56327182-56327201 Msa0078660:CDS 45.0%
GGAAAGGACATGACACTTCT+TGG + chr1_2:56327198-56327217 Msa0078660:CDS 45.0%
AAGGACATGACACTTCTTGG+AGG + chr1_2:56327201-56327220 Msa0078660:CDS 45.0%
TCACGTGCCAAAAAGACGTT+CGG - chr1_2:56327654-56327673 None:intergenic 45.0%
CCAAAACACGTGTCAAACGT+GGG - chr1_2:56327774-56327793 None:intergenic 45.0%
TCCAAAACACGTGTCAAACG+TGG - chr1_2:56327775-56327794 None:intergenic 45.0%
!! ACGTTTGACACGTGTTTTGG+AGG + chr1_2:56327774-56327793 Msa0078660:intron 45.0%
TCACTGTGAATGTTGTCCTG+AGG + chr1_2:56327813-56327832 Msa0078660:intron 45.0%
! GCTCATTGCTGCAGTGTTTT+TGG + chr1_2:56327835-56327854 Msa0078660:intron 45.0%
TATCGCATCACAAGGTCTAC+TGG + chr1_2:56327872-56327891 Msa0078660:intron 45.0%
CATTTCATCTCCAGCCACTT+TGG + chr1_2:56328015-56328034 Msa0078660:intron 45.0%
CACAACATCACCCTTGCTAA+TGG + chr1_2:56328165-56328184 Msa0078660:intron 45.0%
TGCCTTGGAACCATTAGCAA+GGG - chr1_2:56328178-56328197 None:intergenic 45.0%
GAGAGAGCGAGTAAGTTTAC+TGG - chr1_2:56328295-56328314 None:intergenic 45.0%
TTGAGGACCCCACAAAGATT+TGG + chr1_2:56328371-56328390 Msa0078660:intron 45.0%
! GAAAGATTGGACTGGACGAA+AGG + chr1_2:56328508-56328527 Msa0078660:intron 45.0%
CGACCACAAAAGCTCACATA+TGG + chr1_2:56328608-56328627 Msa0078660:intron 45.0%
! ACGCCATATGTGAGCTTTTG+TGG - chr1_2:56328614-56328633 None:intergenic 45.0%
AAAGGCTGAATACCGGGTTA+TGG - chr1_2:56328640-56328659 None:intergenic 45.0%
CGGTATTCAGCCTTTGTACT+TGG + chr1_2:56328645-56328664 Msa0078660:intron 45.0%
CAGTAGCTTTCAGGCATAGA+CGG - chr1_2:56328749-56328768 None:intergenic 45.0%
CCAATTGAGCAGTAGCTTTC+AGG - chr1_2:56328758-56328777 None:intergenic 45.0%
CCTGAAAGCTACTGCTCAAT+TGG + chr1_2:56328755-56328774 Msa0078660:intron 45.0%
AAAGGCTGAATACCGGGTTA+TGG - chr1_2:56328640-56328659 None:intergenic 45.0%
GAGTACAAAGGCTGAATACC+GGG - chr1_2:56328854-56328873 None:intergenic 45.0%
CGAGTACAAAGGCTGAATAC+CGG - chr1_2:56328855-56328874 None:intergenic 45.0%
CGGTATTCAGCCTTTGTACT+CGG + chr1_2:56328645-56328664 Msa0078660:intron 45.0%
TAATACACGGCCGAGTACAA+AGG - chr1_2:56328866-56328885 None:intergenic 45.0%
CAGTAGCTTTCAGGCATAGA+CGG - chr1_2:56328749-56328768 None:intergenic 45.0%
CTACAAAGGATCACCTCGAA+AGG - chr1_2:56329040-56329059 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_2:56329083-56329102 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_2:56329080-56329099 Msa0078660:intron 45.0%
CAGTAGCTTTCAGGCATAGA+CGG - chr1_2:56328749-56328768 None:intergenic 45.0%
CTACAAAGGATCACCTCGAA+AGG - chr1_2:56329040-56329059 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - chr1_2:56329083-56329102 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + chr1_2:56329080-56329099 Msa0078660:intron 45.0%
!!! TGCCTTTTGTTGGCTTTGAG+GGG - chr1_2:56329417-56329436 None:intergenic 45.0%
GGGAAGATCGCAATAAAGGT+GGG + chr1_2:56329442-56329461 Msa0078660:intron 45.0%
CGTATTATGCCGATGTGACA+AGG - chr1_2:56329579-56329598 None:intergenic 45.0%
TCGGCATAATACGACACATC+TGG + chr1_2:56329586-56329605 Msa0078660:intron 45.0%
AACACCCATCTCATCAGTCA+TGG + chr1_2:56329850-56329869 Msa0078660:intron 45.0%
!! AGGAAGTATCCCATTCAGTG+TGG - chr1_2:56329883-56329902 None:intergenic 45.0%
!! ACGATGATGGAGCCAGATTA+GGG + chr1_2:56330053-56330072 Msa0078660:intron 45.0%
GTCACTTATGAATGACGGTG+TGG - chr1_2:56330115-56330134 None:intergenic 45.0%
ACCAAACCTATTCAAAGGGG+AGG + chr1_2:56330135-56330154 Msa0078660:intron 45.0%
ACCTCCCCTTTGAATAGGTT+TGG - chr1_2:56330139-56330158 None:intergenic 45.0%
GAATCACCTCCCCTTTGAAT+AGG - chr1_2:56330144-56330163 None:intergenic 45.0%
ATTCAAAGGGGAGGTGATTC+TGG + chr1_2:56330144-56330163 Msa0078660:intron 45.0%
TACAGTACCATGATTGAGGG+GGG - chr1_2:56330248-56330267 None:intergenic 45.0%
TAGAGGAGGAATGGTGAAGT+TGG - chr1_2:56330829-56330848 None:intergenic 45.0%
GAGTAGGTATAGAGGAGGAA+TGG - chr1_2:56330838-56330857 None:intergenic 45.0%
AACTGGAGTAGGTATAGAGG+AGG - chr1_2:56330843-56330862 None:intergenic 45.0%
GATGGCTGCTATAACAGAAG+AGG - chr1_2:56330966-56330985 None:intergenic 45.0%
AAAGTGAAGGATGCAACGAC+TGG + chr1_2:56331109-56331128 Msa0078660:CDS 45.0%
GAATGATAAGGTGTGCAGTG+TGG + chr1_2:56331298-56331317 Msa0078660:three_prime_UTR 45.0%
!! AAAATACAAAAATTAAATAA+GGG - chr1_2:56322761-56322780 None:intergenic 5.0%
CATCACGATCATCTTCGTCG+TGG + chr1_2:56320890-56320909 Msa0078660:CDS 50.0%
! GAGACTCACCCAGTTCTAGT+AGG - chr1_2:56320962-56320981 None:intergenic 50.0%
AAAGGCAGTTTAGCGACGAG+AGG + chr1_2:56321423-56321442 Msa0078660:intron 50.0%
TTAGCGACGAGAGGTTACCT+AGG + chr1_2:56321432-56321451 Msa0078660:intron 50.0%
CGAGAGGTTACCTAGGTAGT+AGG + chr1_2:56321439-56321458 Msa0078660:intron 50.0%
ACCCCTAAACCCTACTACCT+AGG - chr1_2:56321452-56321471 None:intergenic 50.0%
TGGTCCGATTCCTGGTTGTA+AGG + chr1_2:56322890-56322909 Msa0078660:CDS 50.0%
TCCGATTCCTGGTTGTAAGG+CGG + chr1_2:56322893-56322912 Msa0078660:CDS 50.0%
TCCGCCTTACAACCAGGAAT+CGG - chr1_2:56322897-56322916 None:intergenic 50.0%
! GGAGATGGAAGTGCAACTAC+TGG + chr1_2:56322945-56322964 Msa0078660:CDS 50.0%
!!! TGCTATTTTGCGGTGCGGTA+TGG - chr1_2:56323019-56323038 None:intergenic 50.0%
!!! GATGCTGCTATTTTGCGGTG+CGG - chr1_2:56323024-56323043 None:intergenic 50.0%
! TCCCCTCTTTTGCATCTCTG+TGG + chr1_2:56323365-56323384 Msa0078660:intron 50.0%
CCCACAGAGATGCAAAAGAG+GGG - chr1_2:56323369-56323388 None:intergenic 50.0%
! CCCCTCTTTTGCATCTCTGT+GGG + chr1_2:56323366-56323385 Msa0078660:intron 50.0%
GACCCACAGAGATGCAAAAG+AGG - chr1_2:56323371-56323390 None:intergenic 50.0%
CGCTGTACAATCTGGCACAT+TGG + chr1_2:56323412-56323431 Msa0078660:CDS 50.0%
TCTTCCGAAGAAGCCCTTGA+TGG + chr1_2:56323440-56323459 Msa0078660:CDS 50.0%
!! ACAGCTTGCTGCATCTCGAA+AGG + chr1_2:56323502-56323521 Msa0078660:CDS 50.0%
TGGTTCCACCAATTCCCCTA+TGG - chr1_2:56323582-56323601 None:intergenic 50.0%
GTGTCAACAAGCTTTGCCCT+TGG - chr1_2:56323695-56323714 None:intergenic 50.0%
ACAACTTTACCGTTGCGCCA+AGG - chr1_2:56323879-56323898 None:intergenic 50.0%
CTAAAGCTCTCGCATACGCA+GGG - chr1_2:56324009-56324028 None:intergenic 50.0%
ACTAAAGCTCTCGCATACGC+AGG - chr1_2:56324010-56324029 None:intergenic 50.0%
! ATGCGAGAGCTTTAGTGCAC+CGG + chr1_2:56324014-56324033 Msa0078660:intron 50.0%
! GTCTTCAGAGGCGTAGTTCT+AGG + chr1_2:56324140-56324159 Msa0078660:intron 50.0%
CTGTATTGAGCTCCTGAGTC+TGG - chr1_2:56324472-56324491 None:intergenic 50.0%
GGCCAGAGACATGAATATGG+AGG + chr1_2:56324671-56324690 Msa0078660:intron 50.0%
ATGGGTATATGCGCTGGGTT+TGG + chr1_2:56324715-56324734 Msa0078660:intron 50.0%
TGGGTATATGCGCTGGGTTT+GGG + chr1_2:56324716-56324735 Msa0078660:intron 50.0%
TGTCACACCCTTGTTGGATC+TGG + chr1_2:56325182-56325201 Msa0078660:intron 50.0%
AAGCGCACCAGATCCAACAA+GGG - chr1_2:56325192-56325211 None:intergenic 50.0%
TAAGCGCACCAGATCCAACA+AGG - chr1_2:56325193-56325212 None:intergenic 50.0%
ACACAAAACACCTGGGACCT+GGG - chr1_2:56326871-56326890 None:intergenic 50.0%
TAGCCTGGTGTCCGATGTAT+TGG + chr1_2:56327144-56327163 Msa0078660:intron 50.0%
TGCGCGTTCAGTCTTCGTTT+AGG + chr1_2:56327463-56327482 Msa0078660:intron 50.0%
!! GGTATCTCAGTTGGTGATGG+CGG - chr1_2:56327548-56327567 None:intergenic 50.0%
!! TGAAAGGGTGTTCAACGGCA+GGG - chr1_2:56327617-56327636 None:intergenic 50.0%
!! ATGAAAGGGTGTTCAACGGC+AGG - chr1_2:56327618-56327637 None:intergenic 50.0%
!! GCGCATGAAAGGGTGTTCAA+CGG - chr1_2:56327622-56327641 None:intergenic 50.0%
AAAAGACGTTCGGAGTGTGG+AGG - chr1_2:56327644-56327663 None:intergenic 50.0%
CCAAAAAGACGTTCGGAGTG+TGG - chr1_2:56327647-56327666 None:intergenic 50.0%
! CCACACTCCGAACGTCTTTT+TGG + chr1_2:56327644-56327663 Msa0078660:intron 50.0%
GTCGCAAATGTACGCTCAGA+AGG - chr1_2:56327688-56327707 None:intergenic 50.0%
TTGGGACAACTTCCAGTGTG+TGG + chr1_2:56327746-56327765 Msa0078660:intron 50.0%
TGGGACAACTTCCAGTGTGT+GGG + chr1_2:56327747-56327766 Msa0078660:intron 50.0%
! CCCACGTTTGACACGTGTTT+TGG + chr1_2:56327771-56327790 Msa0078660:intron 50.0%
GTCACTGGTATCGCATCACA+AGG + chr1_2:56327864-56327883 Msa0078660:intron 50.0%
TTGTGTCGTCACACCGTTGT+TGG + chr1_2:56327932-56327951 Msa0078660:intron 50.0%
CCAAAATGAGCCAAAGTGGC+TGG - chr1_2:56328028-56328047 None:intergenic 50.0%
!! CCAGCCACTTTGGCTCATTT+TGG + chr1_2:56328025-56328044 Msa0078660:intron 50.0%
CACCCTTGCTAATGGTTCCA+AGG + chr1_2:56328173-56328192 Msa0078660:intron 50.0%
GTGCCTTGGAACCATTAGCA+AGG - chr1_2:56328179-56328198 None:intergenic 50.0%
GGTTCCAAGGCACAAGTTAC+TGG + chr1_2:56328186-56328205 Msa0078660:intron 50.0%
! CTGGACGAAAGGTACGAAGT+TGG + chr1_2:56328519-56328538 Msa0078660:intron 50.0%
! ACGAAAGGTACGAAGTTGGC+TGG + chr1_2:56328523-56328542 Msa0078660:intron 50.0%
ATATGGCGTGAGCCATAACC+CGG + chr1_2:56328625-56328644 Msa0078660:intron 50.0%
AGGAGCTCGTTTACACCGAT+GGG - chr1_2:56328812-56328831 None:intergenic 50.0%
AAGGAGCTCGTTTACACCGA+TGG - chr1_2:56328813-56328832 None:intergenic 50.0%
GTGTAAACGAGCTCCTTTCG+AGG + chr1_2:56328816-56328835 Msa0078660:intron 50.0%
AGGAGCTCGTTTACACCGAT+AGG - chr1_2:56328812-56328831 None:intergenic 50.0%
GTGTAAACGAGCTCCTTTCG+AGG + chr1_2:56328816-56328835 Msa0078660:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr1_2:56329085-56329104 Msa0078660:intron 50.0%
AGGAGCTCGTTTACACCGAT+AGG - chr1_2:56328812-56328831 None:intergenic 50.0%
GTGTAAACGAGCTCCTTTCG+AGG + chr1_2:56328816-56328835 Msa0078660:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + chr1_2:56329085-56329104 Msa0078660:intron 50.0%
! GGGTGGATTTAGTCCCACAT+TGG - chr1_2:56329396-56329415 None:intergenic 50.0%
!!! TTTTGTTGGCTTTGAGGGGG+TGG - chr1_2:56329413-56329432 None:intergenic 50.0%
ACCCCCTCAAAGCCAACAAA+AGG + chr1_2:56329412-56329431 Msa0078660:intron 50.0%
!!! GCCTTTTGTTGGCTTTGAGG+GGG - chr1_2:56329416-56329435 None:intergenic 50.0%
GGGGAAGATCGCAATAAAGG+TGG + chr1_2:56329441-56329460 Msa0078660:intron 50.0%
! AAGGGGGTATACACAGCCTA+TGG - chr1_2:56329775-56329794 None:intergenic 50.0%
CTGTGTATACCCCCTTGCTT+TGG + chr1_2:56329779-56329798 Msa0078660:intron 50.0%
TGTATACCCCCTTGCTTTGG+CGG + chr1_2:56329782-56329801 Msa0078660:intron 50.0%
TTGAAAGCCCGCCAAAGCAA+GGG - chr1_2:56329793-56329812 None:intergenic 50.0%
ATTGAAAGCCCGCCAAAGCA+AGG - chr1_2:56329794-56329813 None:intergenic 50.0%
!! TGCTTTGGCGGGCTTTCAAT+CGG + chr1_2:56329794-56329813 Msa0078660:intron 50.0%
GTGGGAGATAATCGACAGCA+TGG + chr1_2:56329956-56329975 Msa0078660:intron 50.0%
!! GACGATGATGGAGCCAGATT+AGG + chr1_2:56330052-56330071 Msa0078660:intron 50.0%
!! CGATGATGGAGCCAGATTAG+GGG + chr1_2:56330054-56330073 Msa0078660:intron 50.0%
! ACCATGATTGAGGGGGGTAT+GGG - chr1_2:56330242-56330261 None:intergenic 50.0%
TACCATGATTGAGGGGGGTA+TGG - chr1_2:56330243-56330262 None:intergenic 50.0%
! GGTGTGCAGTGTGGTTGATA+TGG + chr1_2:56331307-56331326 Msa0078660:three_prime_UTR 50.0%
!!! TGCTGCTTTTGCCCACTCAG+TGG - chr1_2:56320394-56320413 None:intergenic 55.0%
! TGGTGTTTCAGGTGCAGCGT+CGG + chr1_2:56320843-56320862 Msa0078660:CDS 55.0%
! TGGGCTTGGCTCTCCAAAGA+AGG + chr1_2:56322563-56322582 Msa0078660:CDS 55.0%
GGTGTTTCCGCCTTACAACC+AGG - chr1_2:56322903-56322922 None:intergenic 55.0%
! TCTTCGCTTGCTGACAGGTG+TGG + chr1_2:56323389-56323408 Msa0078660:intron 55.0%
AGGTGTGGCGCTGTACAATC+TGG + chr1_2:56323404-56323423 Msa0078660:intron 55.0%
TTTGGGAAGCCTTGGCGCAA+CGG + chr1_2:56323867-56323886 Msa0078660:intron 55.0%
! TGCGAGAGCTTTAGTGCACC+GGG + chr1_2:56324015-56324034 Msa0078660:intron 55.0%
CTGGAAATCGAGTAGGGCCT+AGG + chr1_2:56324427-56324446 Msa0078660:intron 55.0%
GCAGTTAAGCTATGGCCCCA+AGG + chr1_2:56324520-56324539 Msa0078660:intron 55.0%
AAGCTATGGCCCCAAGGAGT+TGG + chr1_2:56324526-56324545 Msa0078660:intron 55.0%
TATATGCGCTGGGTTTGGGC+AGG + chr1_2:56324720-56324739 Msa0078660:intron 55.0%
ACCTGGGTACAGTTCGGAGA+GGG - chr1_2:56326855-56326874 None:intergenic 55.0%
CACACAAAACACCTGGGACC+TGG - chr1_2:56326872-56326891 None:intergenic 55.0%
TACATCGGACACCAGGCTAG+AGG - chr1_2:56327143-56327162 None:intergenic 55.0%
CAGCCAATACATCGGACACC+AGG - chr1_2:56327150-56327169 None:intergenic 55.0%
! CTGGTGTCCGATGTATTGGC+TGG + chr1_2:56327148-56327167 Msa0078660:CDS 55.0%
!! GGCGGTATCTCAGTTGGTGA+TGG - chr1_2:56327551-56327570 None:intergenic 55.0%
TCGTGTGGCGGTATCTCAGT+TGG - chr1_2:56327557-56327576 None:intergenic 55.0%
GATGGCAGATCAGCAGTGTC+CGG - chr1_2:56327586-56327605 None:intergenic 55.0%
AACGGCAGGGTTTCAGACGA+TGG - chr1_2:56327604-56327623 None:intergenic 55.0%
! GAGTGTGGAGGCGCATGAAA+GGG - chr1_2:56327632-56327651 None:intergenic 55.0%
ACACTGCAGCAATGAGCCTC+AGG - chr1_2:56327832-56327851 None:intergenic 55.0%
GGTGCTTCGGATCATGTCGT+TGG + chr1_2:56328098-56328117 Msa0078660:intron 55.0%
! AGGCATAGACGGCTGACTTC+AGG - chr1_2:56328738-56328757 None:intergenic 55.0%
GTTATGGCTCACGCCTCGAA+AGG - chr1_2:56328832-56328851 None:intergenic 55.0%
! AGGCATAGACGGCTGACTTC+AGG - chr1_2:56328738-56328757 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr1_2:56329093-56329112 None:intergenic 55.0%
! AGGCATAGACGGCTGACTTC+AGG - chr1_2:56328738-56328757 None:intergenic 55.0%
GCACTCCTCACCTTACAAGC+CGG - chr1_2:56329093-56329112 None:intergenic 55.0%
GTATACCCCCTTGCTTTGGC+GGG + chr1_2:56329783-56329802 Msa0078660:intron 55.0%
TGAAAGCCCGCCAAAGCAAG+GGG - chr1_2:56329792-56329811 None:intergenic 55.0%
GATGGAGCCAGATTAGGGGT+AGG + chr1_2:56330058-56330077 Msa0078660:intron 55.0%
CAAAGGGGAGGTGATTCTGG+TGG + chr1_2:56330147-56330166 Msa0078660:intron 55.0%
ACCCATACCCCCCTCAATCA+TGG + chr1_2:56330238-56330257 Msa0078660:intron 55.0%
! GTGGGTCTTCGCTTGCTGAC+AGG + chr1_2:56323384-56323403 Msa0078660:intron 60.0%
CTCTCGCATACGCAGGGTCT+GGG - chr1_2:56324003-56324022 None:intergenic 60.0%
CTATGGCCCCAAGGAGTTGG+AGG + chr1_2:56324529-56324548 Msa0078660:intron 60.0%
GCTGGGTTTGGGCAGGAAGT+AGG + chr1_2:56324727-56324746 Msa0078660:intron 60.0%
TCCCTCTCCGAACTGTACCC+AGG + chr1_2:56326851-56326870 Msa0078660:intron 60.0%
GACCTGGGTACAGTTCGGAG+AGG - chr1_2:56326856-56326875 None:intergenic 60.0%
CCTGGGACCTGGGTACAGTT+CGG - chr1_2:56326861-56326880 None:intergenic 60.0%
TACCGCCACACGACTGTGAC+CGG + chr1_2:56327564-56327583 Msa0078660:intron 60.0%
AGTGTCCGGTCACAGTCGTG+TGG - chr1_2:56327572-56327591 None:intergenic 60.0%
! GGAGTGTGGAGGCGCATGAA+AGG - chr1_2:56327633-56327652 None:intergenic 60.0%
GGCGAGCCAGCTGGAACAAA+CGG - chr1_2:56327712-56327731 None:intergenic 60.0%
ATAGGAGAAGGCGAGCCAGC+TGG - chr1_2:56327721-56327740 None:intergenic 60.0%
CAAACGTGGGACCCACACAC+TGG - chr1_2:56327761-56327780 None:intergenic 60.0%
TCGAGGCGTGAGCCATAACC+CGG + chr1_2:56328833-56328852 Msa0078660:intron 60.0%
GAAAGCCCGCCAAAGCAAGG+GGG - chr1_2:56329791-56329810 None:intergenic 60.0%
GGGCTTTCAATCGGTCCACG+TGG + chr1_2:56329803-56329822 Msa0078660:intron 60.0%
GATAGACACTGGTGGCCACG+TGG - chr1_2:56329821-56329840 None:intergenic 60.0%
AGGCGCTCCTACCCCTAATC+TGG - chr1_2:56330068-56330087 None:intergenic 60.0%
CTGGGAGGGGTCCCACCAAT+TGG - chr1_2:56323985-56324004 None:intergenic 65.0%
GCATACGCAGGGTCTGGGAG+GGG - chr1_2:56323998-56324017 None:intergenic 65.0%
CGCATACGCAGGGTCTGGGA+GGG - chr1_2:56323999-56324018 None:intergenic 65.0%
TCGCATACGCAGGGTCTGGG+AGG - chr1_2:56324000-56324019 None:intergenic 65.0%
GCTCTCGCATACGCAGGGTC+TGG - chr1_2:56324004-56324023 None:intergenic 65.0%
TAAGCCACGGCCCGAAGCCA+TGG + chr1_2:56324334-56324353 Msa0078660:intron 65.0%
CCGAACTGTACCCAGGTCCC+AGG + chr1_2:56326858-56326877 Msa0078660:intron 65.0%
GTCCGGTCACAGTCGTGTGG+CGG - chr1_2:56327569-56327588 None:intergenic 65.0%
GCGACGCCGTTTGTTCCAGC+TGG + chr1_2:56327703-56327722 Msa0078660:intron 65.0%
CCAACACACCCCCTCACGCT+CGG + chr1_2:56329469-56329488 Msa0078660:intron 65.0%
CAACACACCCCCTCACGCTC+GGG + chr1_2:56329470-56329489 Msa0078660:intron 65.0%
AACACACCCCCTCACGCTCG+GGG + chr1_2:56329471-56329490 Msa0078660:intron 65.0%
AAATCCCGCCCCGAGCGTGA+GGG - chr1_2:56329482-56329501 None:intergenic 65.0%
CCATCCATGGCTTCGGGCCG+TGG - chr1_2:56324341-56324360 None:intergenic 70.0%
CCACGGCCCGAAGCCATGGA+TGG + chr1_2:56324338-56324357 Msa0078660:intron 70.0%
! CCGAGCGTGAGGGGGTGTGT+TGG - chr1_2:56329472-56329491 None:intergenic 70.0%
AATCCCGCCCCGAGCGTGAG+GGG - chr1_2:56329481-56329500 None:intergenic 70.0%
GAAATCCCGCCCCGAGCGTG+AGG - chr1_2:56329483-56329502 None:intergenic 70.0%
ACACCCCCTCACGCTCGGGG+CGG + chr1_2:56329474-56329493 Msa0078660:intron 75.0%
ATCCCGCCCCGAGCGTGAGG+GGG - chr1_2:56329480-56329499 None:intergenic 75.0%
! CACCCCCTCACGCTCGGGGC+GGG + chr1_2:56329475-56329494 Msa0078660:intron 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56320340 56331442 56320340 ID=Msa0078660;Name=Msa0078660
chr1_2 mRNA 56320340 56331442 56320340 ID=Msa0078660-mRNA-1;Parent=Msa0078660;Name=Msa0078660-mRNA-1;_AED=0.14;_eAED=0.14;_QI=430|1|1|1|0.88|1|10|196|479
chr1_2 exon 56320340 56320972 56320340 ID=Msa0078660-mRNA-1:exon:17617;Parent=Msa0078660-mRNA-1
chr1_2 exon 56322545 56322674 56322545 ID=Msa0078660-mRNA-1:exon:17618;Parent=Msa0078660-mRNA-1
chr1_2 exon 56322804 56323051 56322804 ID=Msa0078660-mRNA-1:exon:17619;Parent=Msa0078660-mRNA-1
chr1_2 exon 56323406 56323633 56323406 ID=Msa0078660-mRNA-1:exon:17620;Parent=Msa0078660-mRNA-1
chr1_2 exon 56325477 56325639 56325477 ID=Msa0078660-mRNA-1:exon:17621;Parent=Msa0078660-mRNA-1
chr1_2 exon 56325712 56325785 56325712 ID=Msa0078660-mRNA-1:exon:17622;Parent=Msa0078660-mRNA-1
chr1_2 exon 56326642 56326735 56326642 ID=Msa0078660-mRNA-1:exon:17623;Parent=Msa0078660-mRNA-1
chr1_2 exon 56327147 56327222 56327147 ID=Msa0078660-mRNA-1:exon:17624;Parent=Msa0078660-mRNA-1
chr1_2 exon 56330613 56330684 56330613 ID=Msa0078660-mRNA-1:exon:17625;Parent=Msa0078660-mRNA-1
chr1_2 exon 56331095 56331442 56331095 ID=Msa0078660-mRNA-1:exon:17626;Parent=Msa0078660-mRNA-1
chr1_2 five_prime_UTR 56320340 56320769 56320340 ID=Msa0078660-mRNA-1:five_prime_utr;Parent=Msa0078660-mRNA-1
chr1_2 CDS 56320770 56320972 56320770 ID=Msa0078660-mRNA-1:cds;Parent=Msa0078660-mRNA-1
chr1_2 CDS 56322545 56322674 56322545 ID=Msa0078660-mRNA-1:cds;Parent=Msa0078660-mRNA-1
chr1_2 CDS 56322804 56323051 56322804 ID=Msa0078660-mRNA-1:cds;Parent=Msa0078660-mRNA-1
chr1_2 CDS 56323406 56323633 56323406 ID=Msa0078660-mRNA-1:cds;Parent=Msa0078660-mRNA-1
chr1_2 CDS 56325477 56325639 56325477 ID=Msa0078660-mRNA-1:cds;Parent=Msa0078660-mRNA-1
chr1_2 CDS 56325712 56325785 56325712 ID=Msa0078660-mRNA-1:cds;Parent=Msa0078660-mRNA-1
chr1_2 CDS 56326642 56326735 56326642 ID=Msa0078660-mRNA-1:cds;Parent=Msa0078660-mRNA-1
chr1_2 CDS 56327147 56327222 56327147 ID=Msa0078660-mRNA-1:cds;Parent=Msa0078660-mRNA-1
chr1_2 CDS 56330613 56330684 56330613 ID=Msa0078660-mRNA-1:cds;Parent=Msa0078660-mRNA-1
chr1_2 CDS 56331095 56331246 56331095 ID=Msa0078660-mRNA-1:cds;Parent=Msa0078660-mRNA-1
chr1_2 three_prime_UTR 56331247 56331442 56331247 ID=Msa0078660-mRNA-1:three_prime_utr;Parent=Msa0078660-mRNA-1
Gene Sequence

>Msa0078660

ATGATGGATCTGAGATATTTATTATTGATTATACTAGCTTTGGAAATTTTGTGTGTTGCGAATGGAGATAATTTGGTGTTTCAGGTGCAGCGTCGGAAAACGAGTTTAAGTGGAATTAAACATCACGATCATCTTCGTCGTGGTAGATTTCTTTCATCCGTTGATTTCAATCTTGGTGGTAATGGTCTTCCTACTAGAACTGGGTTGTATTTCACTAAACTTGGGCTTGGCTCTCCAAAGAAGGACTACTATGTCCAAGTTGATACAGGAAGTGATATTCTGTGGGTGAATTGTGTTGAGTGCTCAAGATGTCCTACGAAAAGCCAAATCGGTATGGACTTGACTCTCTATGACCCAAAGGGATCTCATACTTCAGAGTTAATTTCTTGTGATCATGAGTTTTGCTCTTCCACATATGATGGTCCGATTCCTGGTTGTAAGGCGGAAACACCCTGCCCCTATAGCATAACTTATGGAGATGGAAGTGCAACTACTGGATACTATGTCAGGGACTATCTTACTTTTGACCGGATCAACGGAAATCTCCATACCGCACCGCAAAATAGCAGCATCATTTTTGGGTGTGGCGCTGTACAATCTGGCACATTGGGTGCATCTTCCGAAGAAGCCCTTGATGGAATAATTGGTTTTGGACAGGAAAATTCTTCTGTGCTTTCACAGCTTGCTGCATCTCGAAAGGTGAAAAAAATATTTTCACACTGCCTTGACAATATTCGTGGTGGTGGAATATTTGCCATAGGGGAATTGGTGGAACCAAAAGTCAGAACAACTCCATTGGTACCAAATATGGCACATTACAATGTGGTTTTGAAGAATATTGAAGTTGATGGTGATGTTCTACAGCTTCCCTCGGATATATTTGATTCTGGAAATGGGAAGGGCACAGTGATTGATAGTGGAACAACCTTGGCTTATCTTCCTGTCATAGTCTATGACCAACTAATTCCAAAGATTTTTGCCCGTCAGCCTGAATTGAAATTAGCTCGCATTGAGGAACAATTTAAATGTTTTCCGTATGCTGGAAATGTTGATGGTGGATTTCCAGTTGTCAAACTACATTTTGAGGGTTCTCTTTCTCTGACAGTTTATCCTCATGACTATCTGTTCCAATATAAGGTGCCTGGTGTCCGATGTATTGGCTGGCAGAAAAGTGTGACCCAAACTAAGGATGGAAAGGACATGACACTTCTTGGAGATTTGGTACTTTCAAACAAACTTGTCTTGTACGATCTTGAGAATATGGCTATTGGATGGACTGAATACAATTGCTCTTCCAGCATTAAAGTGAAGGATGCAACGACTGGAATAGTACATACAGTGGGCGCACACAATATTTCTTCAGCTTCTACCTTTTTAATTGGTAGAATATTGTCATTCTTTTTGTTGCTAATTGCCATGTTAAACTATTTTTATAACTAG
Protein sequence

>Msa0078660

MMDLRYLLLIILALEILCVANGDNLVFQVQRRKTSLSGIKHHDHLRRGRFLSSVDFNLGGNGLPTRTGLYFTKLGLGSPKKDYYVQVDTGSDILWVNCVECSRCPTKSQIGMDLTLYDPKGSHTSELISCDHEFCSSTYDGPIPGCKAETPCPYSITYGDGSATTGYYVRDYLTFDRINGNLHTAPQNSSIIFGCGAVQSGTLGASSEEALDGIIGFGQENSSVLSQLAASRKVKKIFSHCLDNIRGGGIFAIGELVEPKVRTTPLVPNMAHYNVVLKNIEVDGDVLQLPSDIFDSGNGKGTVIDSGTTLAYLPVIVYDQLIPKIFARQPELKLARIEEQFKCFPYAGNVDGGFPVVKLHFEGSLSLTVYPHDYLFQYKVPGVRCIGWQKSVTQTKDGKDMTLLGDLVLSNKLVLYDLENMAIGWTEYNCSSSIKVKDATTGIVHTVGAHNISSASTFLIGRILSFFLLLIAMLNYFYN*