Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028380 | Msa0028480 | 0.915233 | 7.505856e-85 | -8.615850e-47 |
| Msa0028380 | Msa0124100 | 0.951620 | 1.390799e-109 | -8.615850e-47 |
| Msa0028380 | Msa0124150 | 0.963010 | 1.451772e-121 | -8.615850e-47 |
| Msa0028380 | Msa0267000 | 0.803055 | 4.184232e-49 | -8.615850e-47 |
| Msa0028380 | Msa0267010 | 0.809460 | 1.871284e-50 | -8.615850e-47 |
| Msa0028380 | Msa0360510 | 0.816289 | 5.972434e-52 | -8.615850e-47 |
| Msa0028380 | Msa0414420 | 0.811763 | 5.948518e-51 | -8.615850e-47 |
| Msa0028380 | Msa0452900 | 0.828569 | 8.360299e-55 | -8.615850e-47 |
| Msa0028380 | Msa0743810 | 0.807762 | 4.313522e-50 | -8.615850e-47 |
| Msa0028380 | Msa0745060 | 0.810367 | 1.194019e-50 | -8.615850e-47 |
| Msa0028380 | Msa0783160 | 0.803229 | 3.850575e-49 | -8.615850e-47 |
| Msa0028380 | Msa0825860 | 0.807005 | 6.243493e-50 | -8.615850e-47 |
| Msa0028380 | Msa0956940 | 0.800629 | 1.317749e-48 | -8.615850e-47 |
| Msa0028380 | Msa1025360 | 0.818506 | 1.892273e-52 | -8.615850e-47 |
| Msa0028380 | Msa1025370 | 0.808642 | 2.801276e-50 | -8.615850e-47 |
| Msa0028380 | Msa1044830 | 0.810977 | 8.813558e-51 | -8.615850e-47 |
| Msa0028380 | Msa1044840 | 0.815327 | 9.787378e-52 | -8.615850e-47 |
| Msa0028380 | Msa1269670 | 0.804692 | 1.912276e-49 | -8.615850e-47 |
| Msa0028380 | Msa1270230 | 0.802811 | 4.698967e-49 | -8.615850e-47 |
| Msa0028380 | Msa1283330 | 0.800702 | 1.273378e-48 | -8.615850e-47 |
| Msa0028380 | Msa1285930 | 0.810594 | 1.066343e-50 | -8.615850e-47 |
| Msa0028380 | Msa1287800 | 0.813806 | 2.124361e-51 | -8.615850e-47 |
| Msa0028380 | Msa1287810 | 0.833665 | 4.680075e-56 | -8.615850e-47 |
| Msa0028380 | Msa1289420 | 0.810921 | 9.062521e-51 | -8.615850e-47 |
| Msa0028380 | Msa1404000 | 0.803552 | 3.301358e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028380 | MtrunA17_Chr4g0010341 | 69.231 | 325 | 74 | 4 | 1 | 312 | 1 | 312 | 2.43e-113 | 336 |
| Msa0028380 | MtrunA17_Chr0c01g0489551 | 64.898 | 245 | 71 | 2 | 1 | 236 | 1 | 239 | 1.81e-79 | 241 |
| Msa0028380 | MtrunA17_Chr3g0086081 | 57.759 | 116 | 49 | 0 | 197 | 312 | 1 | 116 | 1.35e-42 | 150 |
| Msa0028380 | MtrunA17_Chr1g0179631 | 30.769 | 156 | 91 | 5 | 166 | 312 | 491 | 638 | 4.05e-19 | 88.2 |
| Msa0028380 | MtrunA17_Chr4g0025081 | 29.496 | 278 | 178 | 10 | 44 | 312 | 93 | 361 | 4.10e-18 | 84.7 |
| Msa0028380 | MtrunA17_Chr1g0179111 | 30.935 | 139 | 94 | 2 | 176 | 312 | 234 | 372 | 3.35e-16 | 79.0 |
| Msa0028380 | MtrunA17_Chr1g0176161 | 27.907 | 258 | 172 | 8 | 62 | 312 | 38 | 288 | 8.61e-15 | 74.7 |
| Msa0028380 | MtrunA17_Chr8g0345501 | 25.600 | 125 | 90 | 1 | 186 | 310 | 410 | 531 | 2.93e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 1_1:+53261613 | Msa0028380:CDS |
| GTGGAGGGATTTGCTGTTGT+TGG | 0.239379 | 1_1:-53261181 | None:intergenic |
| TGGAGGGATTTGCTGTTGTT+GGG | 0.276492 | 1_1:-53261180 | None:intergenic |
| TGATGAATTGGTTAAGTATT+GGG | 0.285226 | 1_1:+53261877 | Msa0028380:CDS |
| TTGTGGAGGGATTTGTTGTT+GGG | 0.288260 | 1_1:-53261222 | None:intergenic |
| CCCGCCTATCTTTGATGAAT+TGG | 0.292649 | 1_1:+53261865 | Msa0028380:CDS |
| TATGGCACCATACCTCCTTA+TGG | 0.295998 | 1_1:+53261092 | Msa0028380:CDS |
| TTGCCCTTGCTCTTTCCATT+AGG | 0.302043 | 1_1:-53260861 | None:intergenic |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 1_1:+53261555 | Msa0028380:CDS |
| GTTGTGGAGGGATTTGTTGT+TGG | 0.342061 | 1_1:-53261223 | None:intergenic |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 1_1:+53261717 | Msa0028380:intron |
| CCGGTTCTTCTTTGCTTTGT+CGG | 0.346522 | 1_1:-53261924 | None:intergenic |
| GGATTTGCTGTTGTTGGGGA+AGG | 0.353536 | 1_1:-53261175 | None:intergenic |
| CCAGTACATCCTGGATATTA+TGG | 0.365206 | 1_1:+53261074 | Msa0028380:CDS |
| TCTTCTAGCCAGGGATCACC+TGG | 0.378638 | 1_1:+53260984 | Msa0028380:CDS |
| GGGATTTGTTGTTGGGGAAA+AGG | 0.385872 | 1_1:-53261215 | None:intergenic |
| GGAATGCCTCTGAAACCTAA+TGG | 0.389273 | 1_1:+53260846 | None:intergenic |
| CGAGAATCTCTCAGATAATC+CGG | 0.394695 | 1_1:-53261377 | None:intergenic |
| ATTTGCTGTTGTTGGGGAAG+GGG | 0.399109 | 1_1:-53261173 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 1_1:-53261820 | None:intergenic |
| ATCTGCTGCATCTTCTAGCC+AGG | 0.410992 | 1_1:+53260974 | Msa0028380:CDS |
| GCTGTTGTTGGGGAAGGGGA+AGG | 0.412477 | 1_1:-53261169 | None:intergenic |
| TTTGTTGTTGGGGAAAAGGT+GGG | 0.414770 | 1_1:-53261211 | None:intergenic |
| TTGATGAATTGGTTAAGTAT+TGG | 0.416006 | 1_1:+53261876 | Msa0028380:CDS |
| TGTTGTTGTTGGGGTTGTGG+TGG | 0.418549 | 1_1:-53261278 | None:intergenic |
| GTTGTTGTTGGGGTTGTGGT+GGG | 0.422252 | 1_1:-53261277 | None:intergenic |
| CCGACAAAGCAAAGAAGAAC+CGG | 0.424122 | 1_1:+53261924 | Msa0028380:CDS |
| ATGGCACCATACCTCCTTAT+GGG | 0.425132 | 1_1:+53261093 | Msa0028380:CDS |
| CTGGAGCAGCTACACTAGCC+TGG | 0.431529 | 1_1:-53261013 | None:intergenic |
| TGTTGTTGTTGGGGAACAGG+TGG | 0.434610 | 1_1:-53261251 | None:intergenic |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 1_1:+53261718 | Msa0028380:intron |
| GTTGTTGTTGGGGAACAGGT+GGG | 0.436449 | 1_1:-53261250 | None:intergenic |
| CTCTTTCCATTAGGTTTCAG+AGG | 0.440822 | 1_1:-53260852 | None:intergenic |
| GATTTGCTGTTGTTGGGGAA+GGG | 0.443203 | 1_1:-53261174 | None:intergenic |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 1_1:+53261396 | Msa0028380:CDS |
| TTTCTTGTTGGGGCTGTGGT+GGG | 0.448866 | 1_1:-53261304 | None:intergenic |
| TTAACCAATTCATCAAAGAT+AGG | 0.456166 | 1_1:-53261869 | None:intergenic |
| CCATAATATCCAGGATGTAC+TGG | 0.458343 | 1_1:-53261074 | None:intergenic |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 1_1:-53261524 | None:intergenic |
| ATTTGTTGTTGGGGAAAAGG+TGG | 0.464163 | 1_1:-53261212 | None:intergenic |
| GGGAGGACCCAGGTGATCCC+TGG | 0.467266 | 1_1:-53260992 | None:intergenic |
| CACAGCTTCCCAAGAACACT+TGG | 0.469604 | 1_1:-53261726 | None:intergenic |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 1_1:+53261814 | Msa0028380:CDS |
| GCTTCAGCAGCCGGTTTGCT+AGG | 0.476808 | 1_1:-53261515 | None:intergenic |
| CGAAGAGGGTGGTGGAGAGC+TGG | 0.490661 | 1_1:+53261334 | Msa0028380:CDS |
| GGGATCACCTGGGTCCTCCC+AGG | 0.492872 | 1_1:+53260995 | Msa0028380:CDS |
| GCGGTATAATACTCACTTAG+TGG | 0.494631 | 1_1:+53260893 | Msa0028380:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 1_1:+53261895 | Msa0028380:CDS |
| GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 1_1:+53260868 | Msa0028380:CDS |
| TGTGGAGGGATTTGTTGTTG+GGG | 0.508078 | 1_1:-53261221 | None:intergenic |
| GGAGGGATTTGCTGTTGTTG+GGG | 0.514390 | 1_1:-53261179 | None:intergenic |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 1_1:-53261546 | None:intergenic |
| AGACAAGAAAGCGGCCACAT+TGG | 0.524562 | 1_1:+53261837 | Msa0028380:CDS |
| AGAAAGCGGCCACATTGGAT+TGG | 0.531391 | 1_1:+53261842 | Msa0028380:CDS |
| TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 1_1:-53261057 | None:intergenic |
| CCAATTCATCAAAGATAGGC+GGG | 0.535490 | 1_1:-53261865 | None:intergenic |
| GAATGTCCCATAAGGAGGTA+TGG | 0.538291 | 1_1:-53261099 | None:intergenic |
| TGGAGCAGCTACACTAGCCT+GGG | 0.539326 | 1_1:-53261012 | None:intergenic |
| TGAGGAGCAGAAGTCGTCGC+TGG | 0.544361 | 1_1:-53261032 | None:intergenic |
| CAAGAAAATGTGGTCGAAGA+GGG | 0.555530 | 1_1:+53261320 | Msa0028380:CDS |
| ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 1_1:+53261065 | Msa0028380:CDS |
| GGTATGGTGCCATAATATCC+AGG | 0.563962 | 1_1:-53261083 | None:intergenic |
| GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 1_1:+53260874 | Msa0028380:CDS |
| TATGGTGGTAAATGATAGCT+CGG | 0.571190 | 1_1:-53261128 | None:intergenic |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 1_1:-53261819 | None:intergenic |
| AATGTGGTCGAAGAGGGTGG+TGG | 0.572688 | 1_1:+53261326 | Msa0028380:CDS |
| TCTGCTGCATCTTCTAGCCA+GGG | 0.572703 | 1_1:+53260975 | Msa0028380:CDS |
| GGAGGAAGGAATGTCCCATA+AGG | 0.575031 | 1_1:-53261107 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 1_1:+53261886 | Msa0028380:CDS |
| CTTAGTGGACGCAGCGACAG+AGG | 0.579770 | 1_1:+53260908 | Msa0028380:CDS |
| GAAACCTAATGGAAAGAGCA+AGG | 0.580306 | 1_1:+53260857 | Msa0028380:CDS |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 1_1:-53261419 | None:intergenic |
| GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 1_1:-53261050 | None:intergenic |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 1_1:+53261404 | Msa0028380:CDS |
| CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 1_1:+53261925 | Msa0028380:CDS |
| ACAAGAAAATGTGGTCGAAG+AGG | 0.610168 | 1_1:+53261319 | Msa0028380:CDS |
| GAGAATCTCTCAGATAATCC+GGG | 0.611014 | 1_1:-53261376 | None:intergenic |
| ACCAATTCATCAAAGATAGG+CGG | 0.615254 | 1_1:-53261866 | None:intergenic |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 1_1:+53261807 | Msa0028380:CDS |
| TAATATCCAGGATGTACTGG+AGG | 0.622903 | 1_1:-53261071 | None:intergenic |
| GTAAATGATAGCTCGGAGGA+AGG | 0.623795 | 1_1:-53261121 | None:intergenic |
| CTTCTAGCCAGGGATCACCT+GGG | 0.625749 | 1_1:+53260985 | Msa0028380:CDS |
| GGAAGGAATGTCCCATAAGG+AGG | 0.628012 | 1_1:-53261104 | None:intergenic |
| TGTGGTGGGACTGAATATGG+TGG | 0.638237 | 1_1:-53261143 | None:intergenic |
| ACACTAGCCTGGGAGGACCC+AGG | 0.643294 | 1_1:-53261002 | None:intergenic |
| AAACCTAATGGAAAGAGCAA+GGG | 0.643918 | 1_1:+53260858 | Msa0028380:CDS |
| TTGGAAGACATATGGTGATG+TGG | 0.652180 | 1_1:+53261574 | Msa0028380:CDS |
| GAAAATGTGGTCGAAGAGGG+TGG | 0.661104 | 1_1:+53261323 | Msa0028380:CDS |
| AGCAGCTACACTAGCCTGGG+AGG | 0.667318 | 1_1:-53261009 | None:intergenic |
| ACAGCCCCAACAAGAAAATG+TGG | 0.669400 | 1_1:+53261310 | Msa0028380:CDS |
| AATATCCAGGATGTACTGGA+GGG | 0.686056 | 1_1:-53261070 | None:intergenic |
| ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 1_1:-53261056 | None:intergenic |
| GGTGGTAAATGATAGCTCGG+AGG | 0.751101 | 1_1:-53261125 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+TGG | 0.757504 | 1_1:-53261851 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.763875 | 1_1:+53261828 | Msa0028380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATCAAAATTAAATGATA+TGG | - | chr1_1:53262048-53262067 | None:intergenic | 15.0% |
| !! | ACAATCAAAATTAAATGATA+TGG | - | chr1_1:53262048-53262067 | None:intergenic | 15.0% |
| !!! | TTTTATTTCTTGTGACAAAT+AGG | + | chr1_1:53262085-53262104 | Msa0028380:intron | 20.0% |
| !!! | TTTTTTTTTAATCCGAATTG+TGG | + | chr1_1:53262305-53262324 | Msa0028380:intron | 20.0% |
| !! | TCACTATGAAATATATGATT+TGG | + | chr1_1:53262402-53262421 | Msa0028380:intron | 20.0% |
| !!! | TTTTATTTCTTGTGACAAAT+AGG | + | chr1_1:53262085-53262104 | Msa0028380:intron | 20.0% |
| !!! | TTTTTTTTTAATCCGAATTG+TGG | + | chr1_1:53262305-53262324 | Msa0028380:intron | 20.0% |
| !! | TCACTATGAAATATATGATT+TGG | + | chr1_1:53262402-53262421 | Msa0028380:intron | 20.0% |
| ! | TTAACCAATTCATCAAAGAT+AGG | - | chr1_1:53261872-53261891 | None:intergenic | 25.0% |
| ! | TTGATGAATTGGTTAAGTAT+TGG | + | chr1_1:53261876-53261895 | Msa0028380:CDS | 25.0% |
| ! | TGATGAATTGGTTAAGTATT+GGG | + | chr1_1:53261877-53261896 | Msa0028380:CDS | 25.0% |
| ! | ATTTCAGTTAAGCAAAAGTT+GGG | - | chr1_1:53262337-53262356 | None:intergenic | 25.0% |
| ! | AATTTCAGTTAAGCAAAAGT+TGG | - | chr1_1:53262338-53262357 | None:intergenic | 25.0% |
| !! | ACTTTTGCTTAACTGAAATT+TGG | + | chr1_1:53262338-53262357 | Msa0028380:intron | 25.0% |
| ! | ATATATTTCATAGTGAAGAC+TGG | - | chr1_1:53262398-53262417 | None:intergenic | 25.0% |
| ! | TTAACCAATTCATCAAAGAT+AGG | - | chr1_1:53261872-53261891 | None:intergenic | 25.0% |
| ! | TTGATGAATTGGTTAAGTAT+TGG | + | chr1_1:53261876-53261895 | Msa0028380:CDS | 25.0% |
| ! | TGATGAATTGGTTAAGTATT+GGG | + | chr1_1:53261877-53261896 | Msa0028380:CDS | 25.0% |
| ! | ATTTCAGTTAAGCAAAAGTT+GGG | - | chr1_1:53262337-53262356 | None:intergenic | 25.0% |
| ! | AATTTCAGTTAAGCAAAAGT+TGG | - | chr1_1:53262338-53262357 | None:intergenic | 25.0% |
| !! | ACTTTTGCTTAACTGAAATT+TGG | + | chr1_1:53262338-53262357 | Msa0028380:intron | 25.0% |
| ! | ATATATTTCATAGTGAAGAC+TGG | - | chr1_1:53262398-53262417 | None:intergenic | 25.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | + | chr1_1:53261358-53261377 | Msa0028380:CDS | 30.0% |
| ATGATAGCAGTTATGAATGA+TGG | - | chr1_1:53261549-53261568 | None:intergenic | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | + | chr1_1:53261555-53261574 | Msa0028380:CDS | 30.0% |
| TTTCAGTTAAGCAAAAGTTG+GGG | - | chr1_1:53262336-53262355 | None:intergenic | 30.0% | |
| ! | CTCTTGTTCTAGATATGATT+TGG | + | chr1_1:53262367-53262386 | Msa0028380:intron | 30.0% |
| ! | TTTGATGATACGAAACTGAA+CGG | + | chr1_1:53262496-53262515 | Msa0028380:intron | 30.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | + | chr1_1:53261358-53261377 | Msa0028380:CDS | 30.0% |
| ATGATAGCAGTTATGAATGA+TGG | - | chr1_1:53261549-53261568 | None:intergenic | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | + | chr1_1:53261555-53261574 | Msa0028380:CDS | 30.0% |
| TTTCAGTTAAGCAAAAGTTG+GGG | - | chr1_1:53262336-53262355 | None:intergenic | 30.0% | |
| ! | CTCTTGTTCTAGATATGATT+TGG | + | chr1_1:53262367-53262386 | Msa0028380:intron | 30.0% |
| ! | TTTGATGATACGAAACTGAA+CGG | + | chr1_1:53262496-53262515 | Msa0028380:intron | 30.0% |
| AAACCTAATGGAAAGAGCAA+GGG | + | chr1_1:53260858-53260877 | Msa0028380:CDS | 35.0% | |
| GTAGATGCAGTAAAAATGAC+AGG | - | chr1_1:53260951-53260970 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGATAGCT+CGG | - | chr1_1:53261131-53261150 | None:intergenic | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | - | chr1_1:53261318-53261337 | None:intergenic | 35.0% |
| !! | CATCACTTTTGGAAGACATA+TGG | + | chr1_1:53261566-53261585 | Msa0028380:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | + | chr1_1:53261597-53261616 | Msa0028380:CDS | 35.0% |
| ACCAATTCATCAAAGATAGG+CGG | - | chr1_1:53261869-53261888 | None:intergenic | 35.0% | |
| TTTCTTGTGACAAATAGGCT+AGG | + | chr1_1:53262090-53262109 | Msa0028380:intron | 35.0% | |
| TCGTGATGCTCGTTAATAAA+CGG | - | chr1_1:53262131-53262150 | None:intergenic | 35.0% | |
| ACGACGAAACCTACAAAAAT+AGG | + | chr1_1:53262147-53262166 | Msa0028380:intron | 35.0% | |
| GAAACCTACAAAAATAGGTC+CGG | + | chr1_1:53262152-53262171 | Msa0028380:intron | 35.0% | |
| !!! | GCACTATTTTTGTTGCAGTT+TGG | + | chr1_1:53262249-53262268 | Msa0028380:intron | 35.0% |
| AATGACAAACAAGACAGAAC+TGG | - | chr1_1:53262277-53262296 | None:intergenic | 35.0% | |
| !! | GTTCTGTCTTGTTTGTCATT+TGG | + | chr1_1:53262277-53262296 | Msa0028380:intron | 35.0% |
| ! | TTTTAATCCGAATTGTGGTC+TGG | + | chr1_1:53262310-53262329 | Msa0028380:intron | 35.0% |
| AAACCTAATGGAAAGAGCAA+GGG | + | chr1_1:53260858-53260877 | Msa0028380:CDS | 35.0% | |
| GTAGATGCAGTAAAAATGAC+AGG | - | chr1_1:53260951-53260970 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGATAGCT+CGG | - | chr1_1:53261131-53261150 | None:intergenic | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | - | chr1_1:53261318-53261337 | None:intergenic | 35.0% |
| !! | CATCACTTTTGGAAGACATA+TGG | + | chr1_1:53261566-53261585 | Msa0028380:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | + | chr1_1:53261597-53261616 | Msa0028380:CDS | 35.0% |
| ACCAATTCATCAAAGATAGG+CGG | - | chr1_1:53261869-53261888 | None:intergenic | 35.0% | |
| TTTCTTGTGACAAATAGGCT+AGG | + | chr1_1:53262090-53262109 | Msa0028380:intron | 35.0% | |
| TCGTGATGCTCGTTAATAAA+CGG | - | chr1_1:53262131-53262150 | None:intergenic | 35.0% | |
| ACGACGAAACCTACAAAAAT+AGG | + | chr1_1:53262147-53262166 | Msa0028380:intron | 35.0% | |
| GAAACCTACAAAAATAGGTC+CGG | + | chr1_1:53262152-53262171 | Msa0028380:intron | 35.0% | |
| !!! | GCACTATTTTTGTTGCAGTT+TGG | + | chr1_1:53262249-53262268 | Msa0028380:intron | 35.0% |
| AATGACAAACAAGACAGAAC+TGG | - | chr1_1:53262277-53262296 | None:intergenic | 35.0% | |
| !! | GTTCTGTCTTGTTTGTCATT+TGG | + | chr1_1:53262277-53262296 | Msa0028380:intron | 35.0% |
| ! | TTTTAATCCGAATTGTGGTC+TGG | + | chr1_1:53262310-53262329 | Msa0028380:intron | 35.0% |
| CTCTTTCCATTAGGTTTCAG+AGG | - | chr1_1:53260855-53260874 | None:intergenic | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | + | chr1_1:53260857-53260876 | Msa0028380:CDS | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | + | chr1_1:53260893-53260912 | Msa0028380:CDS | 40.0% | |
| CAGTAAAAATGACAGGCATC+GGG | - | chr1_1:53260944-53260963 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+CGG | - | chr1_1:53260945-53260964 | None:intergenic | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | - | chr1_1:53261073-53261092 | None:intergenic | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | - | chr1_1:53261074-53261093 | None:intergenic | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | - | chr1_1:53261077-53261096 | None:intergenic | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | + | chr1_1:53261074-53261093 | Msa0028380:CDS | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr1_1:53261149-53261168 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAAGGT+GGG | - | chr1_1:53261214-53261233 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAAGG+TGG | - | chr1_1:53261215-53261234 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | - | chr1_1:53261225-53261244 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGAAC+AGG | - | chr1_1:53261257-53261276 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | - | chr1_1:53261264-53261283 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | - | chr1_1:53261284-53261303 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | - | chr1_1:53261264-53261283 | None:intergenic | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | - | chr1_1:53261317-53261336 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | - | chr1_1:53261319-53261338 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | + | chr1_1:53261319-53261338 | Msa0028380:CDS | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | + | chr1_1:53261320-53261339 | Msa0028380:CDS | 40.0% | |
| GAGAATCTCTCAGATAATCC+GGG | - | chr1_1:53261379-53261398 | None:intergenic | 40.0% | |
| CGAGAATCTCTCAGATAATC+CGG | - | chr1_1:53261380-53261399 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | - | chr1_1:53261422-53261441 | None:intergenic | 40.0% | |
| ! | TTGGAAGACATATGGTGATG+TGG | + | chr1_1:53261574-53261593 | Msa0028380:CDS | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | + | chr1_1:53261603-53261622 | Msa0028380:CDS | 40.0% |
| TAATGCAGACCAAGTGTTCT+TGG | + | chr1_1:53261717-53261736 | Msa0028380:intron | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | + | chr1_1:53261718-53261737 | Msa0028380:intron | 40.0% | |
| CCAATTCATCAAAGATAGGC+GGG | - | chr1_1:53261868-53261887 | None:intergenic | 40.0% | |
| TTTCATAGTGAAGACTGGCA+AGG | - | chr1_1:53262393-53262412 | None:intergenic | 40.0% | |
| GTCTGTAACAAGCTTAAGTG+TGG | + | chr1_1:53262449-53262468 | Msa0028380:intron | 40.0% | |
| ! | TGTGGTAAGCTTTAGCTCAA+GGG | + | chr1_1:53262467-53262486 | Msa0028380:intron | 40.0% |
| CTCTTTCCATTAGGTTTCAG+AGG | - | chr1_1:53260855-53260874 | None:intergenic | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | + | chr1_1:53260857-53260876 | Msa0028380:CDS | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | + | chr1_1:53260893-53260912 | Msa0028380:CDS | 40.0% | |
| CAGTAAAAATGACAGGCATC+GGG | - | chr1_1:53260944-53260963 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+CGG | - | chr1_1:53260945-53260964 | None:intergenic | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | - | chr1_1:53261073-53261092 | None:intergenic | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | - | chr1_1:53261074-53261093 | None:intergenic | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | - | chr1_1:53261077-53261096 | None:intergenic | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | + | chr1_1:53261074-53261093 | Msa0028380:CDS | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | - | chr1_1:53261149-53261168 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAAGGT+GGG | - | chr1_1:53261214-53261233 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAAGG+TGG | - | chr1_1:53261215-53261234 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | - | chr1_1:53261225-53261244 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGAAC+AGG | - | chr1_1:53261257-53261276 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | - | chr1_1:53261264-53261283 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | - | chr1_1:53261284-53261303 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | - | chr1_1:53261264-53261283 | None:intergenic | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | - | chr1_1:53261317-53261336 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | - | chr1_1:53261319-53261338 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | + | chr1_1:53261319-53261338 | Msa0028380:CDS | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | + | chr1_1:53261320-53261339 | Msa0028380:CDS | 40.0% | |
| GAGAATCTCTCAGATAATCC+GGG | - | chr1_1:53261379-53261398 | None:intergenic | 40.0% | |
| CGAGAATCTCTCAGATAATC+CGG | - | chr1_1:53261380-53261399 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | - | chr1_1:53261422-53261441 | None:intergenic | 40.0% | |
| ! | TTGGAAGACATATGGTGATG+TGG | + | chr1_1:53261574-53261593 | Msa0028380:CDS | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | + | chr1_1:53261603-53261622 | Msa0028380:CDS | 40.0% |
| TAATGCAGACCAAGTGTTCT+TGG | + | chr1_1:53261717-53261736 | Msa0028380:intron | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | + | chr1_1:53261718-53261737 | Msa0028380:intron | 40.0% | |
| CCAATTCATCAAAGATAGGC+GGG | - | chr1_1:53261868-53261887 | None:intergenic | 40.0% | |
| TTTCATAGTGAAGACTGGCA+AGG | - | chr1_1:53262393-53262412 | None:intergenic | 40.0% | |
| GTCTGTAACAAGCTTAAGTG+TGG | + | chr1_1:53262449-53262468 | Msa0028380:intron | 40.0% | |
| ! | TGTGGTAAGCTTTAGCTCAA+GGG | + | chr1_1:53262467-53262486 | Msa0028380:intron | 40.0% |
| TTGCCCTTGCTCTTTCCATT+AGG | - | chr1_1:53260864-53260883 | None:intergenic | 45.0% | |
| !! | GGTATGGTGCCATAATATCC+AGG | - | chr1_1:53261086-53261105 | None:intergenic | 45.0% |
| TATGGCACCATACCTCCTTA+TGG | + | chr1_1:53261092-53261111 | Msa0028380:CDS | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | + | chr1_1:53261093-53261112 | Msa0028380:CDS | 45.0% | |
| GAATGTCCCATAAGGAGGTA+TGG | - | chr1_1:53261102-53261121 | None:intergenic | 45.0% | |
| GTAAATGATAGCTCGGAGGA+AGG | - | chr1_1:53261124-53261143 | None:intergenic | 45.0% | |
| !! | ATTTGCTGTTGTTGGGGAAG+GGG | - | chr1_1:53261176-53261195 | None:intergenic | 45.0% |
| !! | GATTTGCTGTTGTTGGGGAA+GGG | - | chr1_1:53261177-53261196 | None:intergenic | 45.0% |
| !! | TGGAGGGATTTGCTGTTGTT+GGG | - | chr1_1:53261183-53261202 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | - | chr1_1:53261199-53261218 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | - | chr1_1:53261200-53261219 | None:intergenic | 45.0% |
| !!! | GGAAAAGGTGGGTTTTGTTG+TGG | - | chr1_1:53261203-53261222 | None:intergenic | 45.0% |
| !! | GGGATTTGTTGTTGGGGAAA+AGG | - | chr1_1:53261218-53261237 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | - | chr1_1:53261224-53261243 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | - | chr1_1:53261226-53261245 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | - | chr1_1:53261263-53261282 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | - | chr1_1:53261265-53261284 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | - | chr1_1:53261263-53261282 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | - | chr1_1:53261265-53261284 | None:intergenic | 45.0% |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | - | chr1_1:53261311-53261330 | None:intergenic | 45.0% |
| ACAGCCCCAACAAGAAAATG+TGG | + | chr1_1:53261310-53261329 | Msa0028380:CDS | 45.0% | |
| !! | CTCGTCGTCGATTCATCTTA+AGG | + | chr1_1:53261396-53261415 | Msa0028380:CDS | 45.0% |
| CGATTCATCTTAAGGCCTAG+TGG | + | chr1_1:53261404-53261423 | Msa0028380:CDS | 45.0% | |
| ! | CAGCTTTTTGCCTAGCAAAC+CGG | + | chr1_1:53261505-53261524 | Msa0028380:intron | 45.0% |
| TACTTAGAAGAGCCCGTATG+CGG | + | chr1_1:53261807-53261826 | Msa0028380:CDS | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | - | chr1_1:53261823-53261842 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | + | chr1_1:53261828-53261847 | Msa0028380:CDS | 45.0% | |
| CCCGCCTATCTTTGATGAAT+TGG | + | chr1_1:53261865-53261884 | Msa0028380:CDS | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | - | chr1_1:53261927-53261946 | None:intergenic | 45.0% | |
| CCGACAAAGCAAAGAAGAAC+CGG | + | chr1_1:53261924-53261943 | Msa0028380:CDS | 45.0% | |
| CGACAAAGCAAAGAAGAACC+GGG | + | chr1_1:53261925-53261944 | Msa0028380:CDS | 45.0% | |
| ACTGGTGGTTGCTTAAGCAA+CGG | + | chr1_1:53261974-53261993 | Msa0028380:intron | 45.0% | |
| CTTGTGACAAATAGGCTAGG+AGG | + | chr1_1:53262093-53262112 | Msa0028380:intron | 45.0% | |
| AATAGGCTAGGAGGTTACGT+CGG | + | chr1_1:53262102-53262121 | Msa0028380:intron | 45.0% | |
| !!! | TTGGCCGGACCTATTTTTGT+AGG | - | chr1_1:53262159-53262178 | None:intergenic | 45.0% |
| GGTAATCTCGTCGTATCTCT+CGG | + | chr1_1:53262208-53262227 | Msa0028380:intron | 45.0% | |
| ! | GTGTGGTAAGCTTTAGCTCA+AGG | + | chr1_1:53262466-53262485 | Msa0028380:intron | 45.0% |
| TTGCCCTTGCTCTTTCCATT+AGG | - | chr1_1:53260864-53260883 | None:intergenic | 45.0% | |
| !! | GGTATGGTGCCATAATATCC+AGG | - | chr1_1:53261086-53261105 | None:intergenic | 45.0% |
| TATGGCACCATACCTCCTTA+TGG | + | chr1_1:53261092-53261111 | Msa0028380:CDS | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | + | chr1_1:53261093-53261112 | Msa0028380:CDS | 45.0% | |
| GAATGTCCCATAAGGAGGTA+TGG | - | chr1_1:53261102-53261121 | None:intergenic | 45.0% | |
| GTAAATGATAGCTCGGAGGA+AGG | - | chr1_1:53261124-53261143 | None:intergenic | 45.0% | |
| !! | ATTTGCTGTTGTTGGGGAAG+GGG | - | chr1_1:53261176-53261195 | None:intergenic | 45.0% |
| !! | GATTTGCTGTTGTTGGGGAA+GGG | - | chr1_1:53261177-53261196 | None:intergenic | 45.0% |
| !! | TGGAGGGATTTGCTGTTGTT+GGG | - | chr1_1:53261183-53261202 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | - | chr1_1:53261199-53261218 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | - | chr1_1:53261200-53261219 | None:intergenic | 45.0% |
| !!! | GGAAAAGGTGGGTTTTGTTG+TGG | - | chr1_1:53261203-53261222 | None:intergenic | 45.0% |
| !! | GGGATTTGTTGTTGGGGAAA+AGG | - | chr1_1:53261218-53261237 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | - | chr1_1:53261224-53261243 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | - | chr1_1:53261226-53261245 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | - | chr1_1:53261263-53261282 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | - | chr1_1:53261265-53261284 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | - | chr1_1:53261263-53261282 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | - | chr1_1:53261265-53261284 | None:intergenic | 45.0% |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | - | chr1_1:53261311-53261330 | None:intergenic | 45.0% |
| ACAGCCCCAACAAGAAAATG+TGG | + | chr1_1:53261310-53261329 | Msa0028380:CDS | 45.0% | |
| !! | CTCGTCGTCGATTCATCTTA+AGG | + | chr1_1:53261396-53261415 | Msa0028380:CDS | 45.0% |
| CGATTCATCTTAAGGCCTAG+TGG | + | chr1_1:53261404-53261423 | Msa0028380:CDS | 45.0% | |
| ! | CAGCTTTTTGCCTAGCAAAC+CGG | + | chr1_1:53261505-53261524 | Msa0028380:intron | 45.0% |
| TACTTAGAAGAGCCCGTATG+CGG | + | chr1_1:53261807-53261826 | Msa0028380:CDS | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | - | chr1_1:53261823-53261842 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | + | chr1_1:53261828-53261847 | Msa0028380:CDS | 45.0% | |
| CCCGCCTATCTTTGATGAAT+TGG | + | chr1_1:53261865-53261884 | Msa0028380:CDS | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | - | chr1_1:53261927-53261946 | None:intergenic | 45.0% | |
| CCGACAAAGCAAAGAAGAAC+CGG | + | chr1_1:53261924-53261943 | Msa0028380:CDS | 45.0% | |
| CGACAAAGCAAAGAAGAACC+GGG | + | chr1_1:53261925-53261944 | Msa0028380:CDS | 45.0% | |
| ACTGGTGGTTGCTTAAGCAA+CGG | + | chr1_1:53261974-53261993 | Msa0028380:intron | 45.0% | |
| CTTGTGACAAATAGGCTAGG+AGG | + | chr1_1:53262093-53262112 | Msa0028380:intron | 45.0% | |
| AATAGGCTAGGAGGTTACGT+CGG | + | chr1_1:53262102-53262121 | Msa0028380:intron | 45.0% | |
| !!! | TTGGCCGGACCTATTTTTGT+AGG | - | chr1_1:53262159-53262178 | None:intergenic | 45.0% |
| GGTAATCTCGTCGTATCTCT+CGG | + | chr1_1:53262208-53262227 | Msa0028380:intron | 45.0% | |
| ! | GTGTGGTAAGCTTTAGCTCA+AGG | + | chr1_1:53262466-53262485 | Msa0028380:intron | 45.0% |
| !! | ATAAAATAAAAATTATGATA+TGG | - | chr1_1:53261650-53261669 | None:intergenic | 5.0% |
| !! | ATAAAATAAAAATTATGATA+TGG | - | chr1_1:53261650-53261669 | None:intergenic | 5.0% |
| ATCTGCTGCATCTTCTAGCC+AGG | + | chr1_1:53260974-53260993 | Msa0028380:CDS | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | + | chr1_1:53260975-53260994 | Msa0028380:CDS | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | - | chr1_1:53261059-53261078 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | - | chr1_1:53261060-53261079 | None:intergenic | 50.0% |
| GGAAGGAATGTCCCATAAGG+AGG | - | chr1_1:53261107-53261126 | None:intergenic | 50.0% | |
| GGAGGAAGGAATGTCCCATA+AGG | - | chr1_1:53261110-53261129 | None:intergenic | 50.0% | |
| GGTGGTAAATGATAGCTCGG+AGG | - | chr1_1:53261128-53261147 | None:intergenic | 50.0% | |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr1_1:53261146-53261165 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | - | chr1_1:53261160-53261179 | None:intergenic | 50.0% |
| !! | GGATTTGCTGTTGTTGGGGA+AGG | - | chr1_1:53261178-53261197 | None:intergenic | 50.0% |
| !! | GGAGGGATTTGCTGTTGTTG+GGG | - | chr1_1:53261182-53261201 | None:intergenic | 50.0% |
| !! | GTGGAGGGATTTGCTGTTGT+TGG | - | chr1_1:53261184-53261203 | None:intergenic | 50.0% |
| !!! | CAGGTGGGTTTTGTTGTGGA+GGG | - | chr1_1:53261238-53261257 | None:intergenic | 50.0% |
| !!! | ACAGGTGGGTTTTGTTGTGG+AGG | - | chr1_1:53261239-53261258 | None:intergenic | 50.0% |
| !!! | GGAACAGGTGGGTTTTGTTG+TGG | - | chr1_1:53261242-53261261 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAACAGGT+GGG | - | chr1_1:53261253-53261272 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAACAGG+TGG | - | chr1_1:53261254-53261273 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | - | chr1_1:53261280-53261299 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | - | chr1_1:53261281-53261300 | None:intergenic | 50.0% |
| TTTCTTGTTGGGGCTGTGGT+GGG | - | chr1_1:53261307-53261326 | None:intergenic | 50.0% | |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | - | chr1_1:53261308-53261327 | None:intergenic | 50.0% |
| GAAAATGTGGTCGAAGAGGG+TGG | + | chr1_1:53261323-53261342 | Msa0028380:CDS | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | - | chr1_1:53261527-53261546 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | - | chr1_1:53261729-53261748 | None:intergenic | 50.0% | |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | + | chr1_1:53261781-53261800 | Msa0028380:CDS | 50.0% |
| TGTCTCCTCAAACCGCATAC+GGG | - | chr1_1:53261822-53261841 | None:intergenic | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | + | chr1_1:53261837-53261856 | Msa0028380:CDS | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | + | chr1_1:53261842-53261861 | Msa0028380:CDS | 50.0% | |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | + | chr1_1:53261886-53261905 | Msa0028380:CDS | 50.0% |
| AAGGGAGGATGCATTCACAC+TGG | + | chr1_1:53261956-53261975 | Msa0028380:intron | 50.0% | |
| ATAGGCTAGGAGGTTACGTC+GGG | + | chr1_1:53262103-53262122 | Msa0028380:intron | 50.0% | |
| ! | CTCGTCGTATCTCTCGGTTT+TGG | + | chr1_1:53262214-53262233 | Msa0028380:intron | 50.0% |
| ATCTGCTGCATCTTCTAGCC+AGG | + | chr1_1:53260974-53260993 | Msa0028380:CDS | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | + | chr1_1:53260975-53260994 | Msa0028380:CDS | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | - | chr1_1:53261059-53261078 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | - | chr1_1:53261060-53261079 | None:intergenic | 50.0% |
| GGAAGGAATGTCCCATAAGG+AGG | - | chr1_1:53261107-53261126 | None:intergenic | 50.0% | |
| GGAGGAAGGAATGTCCCATA+AGG | - | chr1_1:53261110-53261129 | None:intergenic | 50.0% | |
| GGTGGTAAATGATAGCTCGG+AGG | - | chr1_1:53261128-53261147 | None:intergenic | 50.0% | |
| ! | TGTGGTGGGACTGAATATGG+TGG | - | chr1_1:53261146-53261165 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | - | chr1_1:53261160-53261179 | None:intergenic | 50.0% |
| !! | GGATTTGCTGTTGTTGGGGA+AGG | - | chr1_1:53261178-53261197 | None:intergenic | 50.0% |
| !! | GGAGGGATTTGCTGTTGTTG+GGG | - | chr1_1:53261182-53261201 | None:intergenic | 50.0% |
| !! | GTGGAGGGATTTGCTGTTGT+TGG | - | chr1_1:53261184-53261203 | None:intergenic | 50.0% |
| !!! | CAGGTGGGTTTTGTTGTGGA+GGG | - | chr1_1:53261238-53261257 | None:intergenic | 50.0% |
| !!! | ACAGGTGGGTTTTGTTGTGG+AGG | - | chr1_1:53261239-53261258 | None:intergenic | 50.0% |
| !!! | GGAACAGGTGGGTTTTGTTG+TGG | - | chr1_1:53261242-53261261 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAACAGGT+GGG | - | chr1_1:53261253-53261272 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAACAGG+TGG | - | chr1_1:53261254-53261273 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | - | chr1_1:53261280-53261299 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | - | chr1_1:53261281-53261300 | None:intergenic | 50.0% |
| TTTCTTGTTGGGGCTGTGGT+GGG | - | chr1_1:53261307-53261326 | None:intergenic | 50.0% | |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | - | chr1_1:53261308-53261327 | None:intergenic | 50.0% |
| GAAAATGTGGTCGAAGAGGG+TGG | + | chr1_1:53261323-53261342 | Msa0028380:CDS | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | - | chr1_1:53261527-53261546 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | - | chr1_1:53261729-53261748 | None:intergenic | 50.0% | |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | + | chr1_1:53261781-53261800 | Msa0028380:CDS | 50.0% |
| TGTCTCCTCAAACCGCATAC+GGG | - | chr1_1:53261822-53261841 | None:intergenic | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | + | chr1_1:53261837-53261856 | Msa0028380:CDS | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | + | chr1_1:53261842-53261861 | Msa0028380:CDS | 50.0% | |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | + | chr1_1:53261886-53261905 | Msa0028380:CDS | 50.0% |
| AAGGGAGGATGCATTCACAC+TGG | + | chr1_1:53261956-53261975 | Msa0028380:intron | 50.0% | |
| ATAGGCTAGGAGGTTACGTC+GGG | + | chr1_1:53262103-53262122 | Msa0028380:intron | 50.0% | |
| ! | CTCGTCGTATCTCTCGGTTT+TGG | + | chr1_1:53262214-53262233 | Msa0028380:intron | 50.0% |
| GAAAGAGCAAGGGCAACAGC+AGG | + | chr1_1:53260868-53260887 | Msa0028380:CDS | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | + | chr1_1:53260984-53261003 | Msa0028380:CDS | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | + | chr1_1:53260985-53261004 | Msa0028380:CDS | 55.0% | |
| ! | TGGAGCAGCTACACTAGCCT+GGG | - | chr1_1:53261015-53261034 | None:intergenic | 55.0% |
| GGGCACATGTAAGTGGGATG+AGG | - | chr1_1:53261053-53261072 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | + | chr1_1:53261065-53261084 | Msa0028380:CDS | 55.0% | |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | - | chr1_1:53261161-53261180 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | - | chr1_1:53261164-53261183 | None:intergenic | 55.0% |
| AATGTGGTCGAAGAGGGTGG+TGG | + | chr1_1:53261326-53261345 | Msa0028380:CDS | 55.0% | |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | + | chr1_1:53261613-53261632 | Msa0028380:CDS | 55.0% |
| AAGAGCCCGTATGCGGTTTG+AGG | + | chr1_1:53261814-53261833 | Msa0028380:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | - | chr1_1:53261854-53261873 | None:intergenic | 55.0% | |
| AGCAAAGAAGAACCGGGCGT+CGG | + | chr1_1:53261931-53261950 | Msa0028380:intron | 55.0% | |
| !! | AAGAACCGGGCGTCGGAAAA+GGG | + | chr1_1:53261938-53261957 | Msa0028380:intron | 55.0% |
| GGAGGATGCATTCACACTGG+TGG | + | chr1_1:53261959-53261978 | Msa0028380:intron | 55.0% | |
| TAGCACGCTCGTCGCAGTAT+TGG | - | chr1_1:53262178-53262197 | None:intergenic | 55.0% | |
| AATACTGCGACGAGCGTGCT+AGG | + | chr1_1:53262177-53262196 | Msa0028380:intron | 55.0% | |
| GTTGGGGCCAGACCACAATT+CGG | - | chr1_1:53262320-53262339 | None:intergenic | 55.0% | |
| GAAAGAGCAAGGGCAACAGC+AGG | + | chr1_1:53260868-53260887 | Msa0028380:CDS | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | + | chr1_1:53260984-53261003 | Msa0028380:CDS | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | + | chr1_1:53260985-53261004 | Msa0028380:CDS | 55.0% | |
| ! | TGGAGCAGCTACACTAGCCT+GGG | - | chr1_1:53261015-53261034 | None:intergenic | 55.0% |
| GGGCACATGTAAGTGGGATG+AGG | - | chr1_1:53261053-53261072 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | + | chr1_1:53261065-53261084 | Msa0028380:CDS | 55.0% | |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | - | chr1_1:53261161-53261180 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | - | chr1_1:53261164-53261183 | None:intergenic | 55.0% |
| AATGTGGTCGAAGAGGGTGG+TGG | + | chr1_1:53261326-53261345 | Msa0028380:CDS | 55.0% | |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | + | chr1_1:53261613-53261632 | Msa0028380:CDS | 55.0% |
| AAGAGCCCGTATGCGGTTTG+AGG | + | chr1_1:53261814-53261833 | Msa0028380:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | - | chr1_1:53261854-53261873 | None:intergenic | 55.0% | |
| AGCAAAGAAGAACCGGGCGT+CGG | + | chr1_1:53261931-53261950 | Msa0028380:intron | 55.0% | |
| !! | AAGAACCGGGCGTCGGAAAA+GGG | + | chr1_1:53261938-53261957 | Msa0028380:intron | 55.0% |
| GGAGGATGCATTCACACTGG+TGG | + | chr1_1:53261959-53261978 | Msa0028380:intron | 55.0% | |
| TAGCACGCTCGTCGCAGTAT+TGG | - | chr1_1:53262178-53262197 | None:intergenic | 55.0% | |
| AATACTGCGACGAGCGTGCT+AGG | + | chr1_1:53262177-53262196 | Msa0028380:intron | 55.0% | |
| GTTGGGGCCAGACCACAATT+CGG | - | chr1_1:53262320-53262339 | None:intergenic | 55.0% | |
| GCAAGGGCAACAGCAGGAAG+CGG | + | chr1_1:53260874-53260893 | Msa0028380:CDS | 60.0% | |
| ! | CTTAGTGGACGCAGCGACAG+AGG | + | chr1_1:53260908-53260927 | Msa0028380:CDS | 60.0% |
| ! | AGCAGCTACACTAGCCTGGG+AGG | - | chr1_1:53261012-53261031 | None:intergenic | 60.0% |
| CTGGAGCAGCTACACTAGCC+TGG | - | chr1_1:53261016-53261035 | None:intergenic | 60.0% | |
| TGAGGAGCAGAAGTCGTCGC+TGG | - | chr1_1:53261035-53261054 | None:intergenic | 60.0% | |
| GCTGTTGTTGGGGAAGGGGA+AGG | - | chr1_1:53261172-53261191 | None:intergenic | 60.0% | |
| !! | GCTTCAGCAGCCGGTTTGCT+AGG | - | chr1_1:53261518-53261537 | None:intergenic | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | + | chr1_1:53261895-53261914 | Msa0028380:CDS | 60.0% |
| !! | GAAGAACCGGGCGTCGGAAA+AGG | + | chr1_1:53261937-53261956 | Msa0028380:intron | 60.0% |
| ! | ATCCTCCCTTTTCCGACGCC+CGG | - | chr1_1:53261946-53261965 | None:intergenic | 60.0% |
| !! | ACGCTCGTCGCAGTATTGGC+CGG | - | chr1_1:53262174-53262193 | None:intergenic | 60.0% |
| GCAAGGGCAACAGCAGGAAG+CGG | + | chr1_1:53260874-53260893 | Msa0028380:CDS | 60.0% | |
| ! | CTTAGTGGACGCAGCGACAG+AGG | + | chr1_1:53260908-53260927 | Msa0028380:CDS | 60.0% |
| ! | AGCAGCTACACTAGCCTGGG+AGG | - | chr1_1:53261012-53261031 | None:intergenic | 60.0% |
| CTGGAGCAGCTACACTAGCC+TGG | - | chr1_1:53261016-53261035 | None:intergenic | 60.0% | |
| TGAGGAGCAGAAGTCGTCGC+TGG | - | chr1_1:53261035-53261054 | None:intergenic | 60.0% | |
| GCTGTTGTTGGGGAAGGGGA+AGG | - | chr1_1:53261172-53261191 | None:intergenic | 60.0% | |
| !! | GCTTCAGCAGCCGGTTTGCT+AGG | - | chr1_1:53261518-53261537 | None:intergenic | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | + | chr1_1:53261895-53261914 | Msa0028380:CDS | 60.0% |
| !! | GAAGAACCGGGCGTCGGAAA+AGG | + | chr1_1:53261937-53261956 | Msa0028380:intron | 60.0% |
| ! | ATCCTCCCTTTTCCGACGCC+CGG | - | chr1_1:53261946-53261965 | None:intergenic | 60.0% |
| !! | ACGCTCGTCGCAGTATTGGC+CGG | - | chr1_1:53262174-53262193 | None:intergenic | 60.0% |
| ! | ACACTAGCCTGGGAGGACCC+AGG | - | chr1_1:53261005-53261024 | None:intergenic | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | + | chr1_1:53261334-53261353 | Msa0028380:CDS | 65.0% |
| !! | AACCGGGCGTCGGAAAAGGG+AGG | + | chr1_1:53261941-53261960 | Msa0028380:intron | 65.0% |
| ! | CGGAGAGCACGCTGAGCGTA+TGG | + | chr1_1:53261994-53262013 | Msa0028380:intron | 65.0% |
| ! | CGAGCGTGCTAGGAGTGTGC+AGG | + | chr1_1:53262187-53262206 | Msa0028380:intron | 65.0% |
| ! | ACACTAGCCTGGGAGGACCC+AGG | - | chr1_1:53261005-53261024 | None:intergenic | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | + | chr1_1:53261334-53261353 | Msa0028380:CDS | 65.0% |
| !! | AACCGGGCGTCGGAAAAGGG+AGG | + | chr1_1:53261941-53261960 | Msa0028380:intron | 65.0% |
| ! | CGGAGAGCACGCTGAGCGTA+TGG | + | chr1_1:53261994-53262013 | Msa0028380:intron | 65.0% |
| ! | CGAGCGTGCTAGGAGTGTGC+AGG | + | chr1_1:53262187-53262206 | Msa0028380:intron | 65.0% |
| GGGAGGACCCAGGTGATCCC+TGG | - | chr1_1:53260995-53261014 | None:intergenic | 70.0% | |
| GGGATCACCTGGGTCCTCCC+AGG | + | chr1_1:53260995-53261014 | Msa0028380:CDS | 70.0% | |
| GGGAGGACCCAGGTGATCCC+TGG | - | chr1_1:53260995-53261014 | None:intergenic | 70.0% | |
| GGGATCACCTGGGTCCTCCC+AGG | + | chr1_1:53260995-53261014 | Msa0028380:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 53260849 | 53262635 | 53260849 | ID=Msa0028380;Name=Msa0028380 |
| chr1_1 | mRNA | 53260849 | 53262635 | 53260849 | ID=Msa0028380-mRNA-1;Parent=Msa0028380;Name=Msa0028380-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|0.66|0.25|0.75|0.66|0.75|4|0|313 |
| chr1_1 | exon | 53260849 | 53261432 | 53260849 | ID=Msa0028380-mRNA-1:exon:15677;Parent=Msa0028380-mRNA-1 |
| chr1_1 | exon | 53261508 | 53261634 | 53261508 | ID=Msa0028380-mRNA-1:exon:15678;Parent=Msa0028380-mRNA-1 |
| chr1_1 | exon | 53261725 | 53261948 | 53261725 | ID=Msa0028380-mRNA-1:exon:15679;Parent=Msa0028380-mRNA-1 |
| chr1_1 | exon | 53262629 | 53262635 | 53262629 | ID=Msa0028380-mRNA-1:exon:15680;Parent=Msa0028380-mRNA-1 |
| chr1_1 | CDS | 53260849 | 53261432 | 53260849 | ID=Msa0028380-mRNA-1:cds;Parent=Msa0028380-mRNA-1 |
| chr1_1 | CDS | 53261508 | 53261634 | 53261508 | ID=Msa0028380-mRNA-1:cds;Parent=Msa0028380-mRNA-1 |
| chr1_1 | CDS | 53261725 | 53261948 | 53261725 | ID=Msa0028380-mRNA-1:cds;Parent=Msa0028380-mRNA-1 |
| chr1_1 | CDS | 53262629 | 53262635 | 53262629 | ID=Msa0028380-mRNA-1:cds;Parent=Msa0028380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
