Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124100 | RHN59169.1 | 69.136 | 324 | 74 | 4 | 1 | 311 | 1 | 311 | 1.12e-108 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124100 | A0A396I0R2 | 69.136 | 324 | 74 | 4 | 1 | 311 | 1 | 311 | 5.33e-109 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015750 | Msa0124100 | 0.813291 | 2.756513e-51 | -8.615850e-47 |
| Msa0016570 | Msa0124100 | 0.816689 | 4.857414e-52 | -8.615850e-47 |
| Msa0028380 | Msa0124100 | 0.951620 | 1.390799e-109 | -8.615850e-47 |
| Msa0028480 | Msa0124100 | 0.916071 | 2.766061e-85 | -8.615850e-47 |
| Msa0102070 | Msa0124100 | 0.829978 | 3.803391e-55 | -8.615850e-47 |
| Msa0110260 | Msa0124100 | 0.804175 | 2.449979e-49 | -8.615850e-47 |
| Msa0110270 | Msa0124100 | 0.810698 | 1.012955e-50 | -8.615850e-47 |
| Msa0124100 | Msa0124150 | 0.967311 | 4.200375e-127 | -8.615850e-47 |
| Msa0124100 | Msa0142220 | 0.805702 | 1.175219e-49 | -8.615850e-47 |
| Msa0124100 | Msa0200000 | 0.807190 | 5.704031e-50 | -8.615850e-47 |
| Msa0124100 | Msa0227480 | 0.827226 | 1.758237e-54 | -8.615850e-47 |
| Msa0124100 | Msa0267000 | 0.842774 | 2.105168e-58 | -8.615850e-47 |
| Msa0124100 | Msa0267010 | 0.840943 | 6.413341e-58 | -8.615850e-47 |
| Msa0124100 | Msa0270520 | 0.803979 | 2.692059e-49 | -8.615850e-47 |
| Msa0124100 | Msa0304170 | 0.802343 | 5.868072e-49 | -8.615850e-47 |
| Msa0124100 | Msa0306460 | 0.805927 | 1.053734e-49 | -8.615850e-47 |
| Msa0124100 | Msa0342240 | 0.838664 | 2.514053e-57 | -8.615850e-47 |
| Msa0124100 | Msa0360510 | 0.863327 | 2.694584e-64 | -8.615850e-47 |
| Msa0124100 | Msa0384800 | 0.819015 | 1.449683e-52 | -8.615850e-47 |
| Msa0124100 | Msa0414410 | 0.824175 | 9.304888e-54 | -8.615850e-47 |
| Msa0124100 | Msa0414420 | 0.852307 | 5.029224e-61 | -8.615850e-47 |
| Msa0124100 | Msa0438620 | 0.815381 | 9.518974e-52 | -8.615850e-47 |
| Msa0124100 | Msa0450000 | 0.816318 | 5.882224e-52 | -8.615850e-47 |
| Msa0124100 | Msa0450570 | 0.800064 | 1.717100e-48 | -8.615850e-47 |
| Msa0124100 | Msa0452900 | 0.866388 | 2.956804e-65 | -8.615850e-47 |
| Msa0124100 | Msa0453120 | 0.834010 | 3.838293e-56 | -8.615850e-47 |
| Msa0124100 | Msa0454370 | 0.813663 | 2.284443e-51 | -8.615850e-47 |
| Msa0124100 | Msa0454910 | 0.800941 | 1.137963e-48 | -8.615850e-47 |
| Msa0124100 | Msa0491590 | 0.802585 | 5.231122e-49 | -8.615850e-47 |
| Msa0124100 | Msa0506190 | 0.801657 | 8.118808e-49 | -8.615850e-47 |
| Msa0124100 | Msa0506270 | 0.816838 | 4.499437e-52 | -8.615850e-47 |
| Msa0124100 | Msa0534540 | 0.812720 | 3.678322e-51 | -8.615850e-47 |
| Msa0124100 | Msa0564890 | 0.833945 | 3.984281e-56 | -8.615850e-47 |
| Msa0124100 | Msa0636170 | 0.804984 | 1.661490e-49 | -8.615850e-47 |
| Msa0124100 | Msa0726140 | 0.838789 | 2.334154e-57 | -8.615850e-47 |
| Msa0124100 | Msa0729800 | 0.818457 | 1.941024e-52 | -8.615850e-47 |
| Msa0124100 | Msa0733290 | 0.804040 | 2.614715e-49 | -8.615850e-47 |
| Msa0124100 | Msa0743810 | 0.844470 | 7.410368e-59 | -8.615850e-47 |
| Msa0124100 | Msa0745060 | 0.849435 | 3.239436e-60 | -8.615850e-47 |
| Msa0124100 | Msa0767720 | 0.806228 | 9.107911e-50 | -8.615850e-47 |
| Msa0124100 | Msa0783160 | 0.832017 | 1.201749e-55 | -8.615850e-47 |
| Msa0124100 | Msa0787600 | 0.835472 | 1.645055e-56 | -8.615850e-47 |
| Msa0124100 | Msa0808010 | 0.806007 | 1.013574e-49 | -8.615850e-47 |
| Msa0124100 | Msa0825860 | 0.844493 | 7.306301e-59 | -8.615850e-47 |
| Msa0124100 | Msa0846330 | 0.815476 | 9.066120e-52 | -8.615850e-47 |
| Msa0124100 | Msa0846350 | 0.838243 | 3.228644e-57 | -8.615850e-47 |
| Msa0124100 | Msa0865320 | 0.826583 | 2.505774e-54 | -8.615850e-47 |
| Msa0124100 | Msa0884150 | 0.815027 | 1.141013e-51 | -8.615850e-47 |
| Msa0124100 | Msa0885290 | 0.800358 | 1.496571e-48 | -8.615850e-47 |
| Msa0124100 | Msa0888370 | 0.811378 | 7.213147e-51 | -8.615850e-47 |
| Msa0124100 | Msa0981370 | 0.818728 | 1.684619e-52 | -8.615850e-47 |
| Msa0124100 | Msa0989060 | 0.816721 | 4.778065e-52 | -8.615850e-47 |
| Msa0124100 | Msa1016280 | 0.840787 | 7.045738e-58 | -8.615850e-47 |
| Msa0124100 | Msa1025360 | 0.852606 | 4.133719e-61 | -8.615850e-47 |
| Msa0124100 | Msa1025370 | 0.846279 | 2.399941e-59 | -8.615850e-47 |
| Msa0124100 | Msa1044830 | 0.850062 | 2.165224e-60 | -8.615850e-47 |
| Msa0124100 | Msa1044840 | 0.847887 | 8.702701e-60 | -8.615850e-47 |
| Msa0124100 | Msa1092990 | 0.818479 | 1.918508e-52 | -8.615850e-47 |
| Msa0124100 | Msa1100980 | 0.843287 | 1.537910e-58 | -8.615850e-47 |
| Msa0124100 | Msa1109440 | 0.805919 | 1.057817e-49 | -8.615850e-47 |
| Msa0124100 | Msa1121200 | 0.818652 | 1.752554e-52 | -8.615850e-47 |
| Msa0124100 | Msa1135740 | 0.822932 | 1.818298e-53 | -8.615850e-47 |
| Msa0124100 | Msa1146110 | 0.830825 | 2.360675e-55 | -8.615850e-47 |
| Msa0124100 | Msa1173920 | 0.802529 | 5.372789e-49 | -8.615850e-47 |
| Msa0124100 | Msa1187940 | 0.831320 | 1.784181e-55 | -8.615850e-47 |
| Msa0124100 | Msa1187950 | 0.822813 | 1.937436e-53 | -8.615850e-47 |
| Msa0124100 | Msa1192640 | 0.828848 | 7.154304e-55 | -8.615850e-47 |
| Msa0124100 | Msa1269670 | 0.846109 | 2.669504e-59 | -8.615850e-47 |
| Msa0124100 | Msa1270230 | 0.846075 | 2.727090e-59 | -8.615850e-47 |
| Msa0124100 | Msa1270240 | 0.849350 | 3.420699e-60 | -8.615850e-47 |
| Msa0124100 | Msa1270270 | 0.827119 | 1.865652e-54 | -8.615850e-47 |
| Msa0124100 | Msa1283330 | 0.851489 | 8.583228e-61 | -8.615850e-47 |
| Msa0124100 | Msa1285930 | 0.835803 | 1.356132e-56 | -8.615850e-47 |
| Msa0124100 | Msa1287800 | 0.847894 | 8.663685e-60 | -8.615850e-47 |
| Msa0124100 | Msa1287810 | 0.856243 | 3.670307e-62 | -8.615850e-47 |
| Msa0124100 | Msa1289420 | 0.814206 | 1.733619e-51 | -8.615850e-47 |
| Msa0124100 | Msa1340590 | 0.812748 | 3.626898e-51 | -8.615850e-47 |
| Msa0124100 | Msa1397580 | 0.807855 | 4.121356e-50 | -8.615850e-47 |
| Msa0124100 | Msa1404000 | 0.836933 | 6.998722e-57 | -8.615850e-47 |
| Msa0124100 | Msa1415310 | 0.827957 | 1.174172e-54 | -8.615850e-47 |
| Msa0124100 | Msa1422180 | 0.815553 | 8.715603e-52 | -8.615850e-47 |
| Msa0124100 | Msa1433120 | 0.836294 | 1.017906e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124100 | MtrunA17_Chr4g0010341 | 69.136 | 324 | 74 | 4 | 1 | 311 | 1 | 311 | 1.03e-112 | 335 |
| Msa0124100 | MtrunA17_Chr0c01g0489551 | 64.898 | 245 | 71 | 2 | 1 | 236 | 1 | 239 | 1.73e-79 | 241 |
| Msa0124100 | MtrunA17_Chr3g0086081 | 57.391 | 115 | 49 | 0 | 197 | 311 | 1 | 115 | 6.66e-42 | 148 |
| Msa0124100 | MtrunA17_Chr1g0179631 | 30.519 | 154 | 90 | 5 | 166 | 310 | 491 | 636 | 1.11e-18 | 86.7 |
| Msa0124100 | MtrunA17_Chr4g0025081 | 29.242 | 277 | 178 | 10 | 44 | 311 | 93 | 360 | 1.42e-17 | 82.8 |
| Msa0124100 | MtrunA17_Chr1g0179111 | 31.200 | 125 | 85 | 1 | 176 | 299 | 234 | 358 | 1.07e-15 | 77.4 |
| Msa0124100 | MtrunA17_Chr1g0176161 | 28.405 | 257 | 170 | 8 | 62 | 311 | 38 | 287 | 9.06e-15 | 74.7 |
| Msa0124100 | MtrunA17_Chr8g0345501 | 25.600 | 125 | 90 | 1 | 186 | 310 | 410 | 531 | 2.73e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 1_3:-51605711 | Msa0124100:intron |
| GTGGAGGGATTTGCTGTTGT+TGG | 0.239379 | 1_3:+51606143 | None:intergenic |
| TGGAGGGATTTGCTGTTGTT+GGG | 0.276492 | 1_3:+51606144 | None:intergenic |
| TGATGAATTGGTTAAGTATT+GGG | 0.285226 | 1_3:-51605447 | Msa0124100:CDS |
| TTGTGGAGGGATTTGTTGTT+GGG | 0.288260 | 1_3:+51606102 | None:intergenic |
| CCCGCCTATCTTTGATGAAT+TGG | 0.292649 | 1_3:-51605459 | Msa0124100:CDS |
| TATGGCACCATACCTCCTTA+TGG | 0.295998 | 1_3:-51606232 | Msa0124100:CDS |
| TTGCCCTTGCTCTTTCCATT+AGG | 0.302043 | 1_3:+51606463 | None:intergenic |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 1_3:-51605769 | Msa0124100:CDS |
| GTTGTGGAGGGATTTGTTGT+TGG | 0.342061 | 1_3:+51606101 | None:intergenic |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 1_3:-51605607 | Msa0124100:intron |
| CCGGTTCTTCTTTGCTTTGT+CGG | 0.346522 | 1_3:+51605400 | None:intergenic |
| GGATTTGCTGTTGTTGGGGA+AGG | 0.353536 | 1_3:+51606149 | None:intergenic |
| CCAGTACATCCTGGATATTA+TGG | 0.365206 | 1_3:-51606250 | Msa0124100:CDS |
| TCTTCTAGCCAGGGATCACC+TGG | 0.378638 | 1_3:-51606340 | Msa0124100:CDS |
| GGGATTTGTTGTTGGGGAAA+AGG | 0.385872 | 1_3:+51606109 | None:intergenic |
| GGAATGCCTCTGAAACCTAA+TGG | 0.389273 | 1_3:-51606478 | Msa0124100:CDS |
| CGAGAATCTCTCAGATAATC+CGG | 0.394695 | 1_3:+51605947 | None:intergenic |
| ATTTGCTGTTGTTGGGGAAG+GGG | 0.399109 | 1_3:+51606151 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 1_3:+51605504 | None:intergenic |
| ATCTGCTGCATCTTCTAGCC+AGG | 0.410992 | 1_3:-51606350 | Msa0124100:CDS |
| GCTGTTGTTGGGGAAGGGGA+AGG | 0.412477 | 1_3:+51606155 | None:intergenic |
| TTTGTTGTTGGGGAAAAGGT+GGG | 0.414770 | 1_3:+51606113 | None:intergenic |
| TTGATGAATTGGTTAAGTAT+TGG | 0.416006 | 1_3:-51605448 | Msa0124100:CDS |
| TGTTGTTGTTGGGGTTGTGG+TGG | 0.418549 | 1_3:+51606046 | None:intergenic |
| GTTGTTGTTGGGGTTGTGGT+GGG | 0.422252 | 1_3:+51606047 | None:intergenic |
| CCGACAAAGCAAAGAAGAAC+CGG | 0.424122 | 1_3:-51605400 | Msa0124100:CDS |
| ATGGCACCATACCTCCTTAT+GGG | 0.425132 | 1_3:-51606231 | Msa0124100:CDS |
| CTGGAGCAGCTACACTAGCC+TGG | 0.431529 | 1_3:+51606311 | None:intergenic |
| TGTTGTTGTTGGGGAACAGG+TGG | 0.434610 | 1_3:+51606073 | None:intergenic |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 1_3:-51605606 | Msa0124100:intron |
| GTTGTTGTTGGGGAACAGGT+GGG | 0.436449 | 1_3:+51606074 | None:intergenic |
| CTCTTTCCATTAGGTTTCAG+AGG | 0.440822 | 1_3:+51606472 | None:intergenic |
| GATTTGCTGTTGTTGGGGAA+GGG | 0.443203 | 1_3:+51606150 | None:intergenic |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 1_3:-51605928 | Msa0124100:CDS |
| TTTCTTGTTGGGGCTGTGGT+GGG | 0.448866 | 1_3:+51606020 | None:intergenic |
| TTAACCAATTCATCAAAGAT+AGG | 0.456166 | 1_3:+51605455 | None:intergenic |
| CCATAATATCCAGGATGTAC+TGG | 0.458343 | 1_3:+51606250 | None:intergenic |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 1_3:+51605800 | None:intergenic |
| ATTTGTTGTTGGGGAAAAGG+TGG | 0.464163 | 1_3:+51606112 | None:intergenic |
| GGGAGGACCCAGGTGATCCC+TGG | 0.467266 | 1_3:+51606332 | None:intergenic |
| CACAGCTTCCCAAGAACACT+TGG | 0.469604 | 1_3:+51605598 | None:intergenic |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 1_3:-51605510 | Msa0124100:CDS |
| GCTTCAGCAGCCGGTTTGCT+AGG | 0.476808 | 1_3:+51605809 | None:intergenic |
| CGAAGAGGGTGGTGGAGAGC+TGG | 0.490661 | 1_3:-51605990 | Msa0124100:CDS |
| GGGATCACCTGGGTCCTCCC+AGG | 0.492872 | 1_3:-51606329 | Msa0124100:CDS |
| GCGGTATAATACTCACTTAG+TGG | 0.494631 | 1_3:-51606431 | Msa0124100:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 1_3:-51605429 | Msa0124100:CDS |
| GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 1_3:-51606456 | Msa0124100:CDS |
| TGTGGAGGGATTTGTTGTTG+GGG | 0.508078 | 1_3:+51606103 | None:intergenic |
| GGAGGGATTTGCTGTTGTTG+GGG | 0.514390 | 1_3:+51606145 | None:intergenic |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 1_3:+51605778 | None:intergenic |
| AGACAAGAAAGCGGCCACAT+TGG | 0.524562 | 1_3:-51605487 | Msa0124100:CDS |
| AGAAAGCGGCCACATTGGAT+TGG | 0.531391 | 1_3:-51605482 | Msa0124100:CDS |
| TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 1_3:+51606267 | None:intergenic |
| CCAATTCATCAAAGATAGGC+GGG | 0.535490 | 1_3:+51605459 | None:intergenic |
| GAATGTCCCATAAGGAGGTA+TGG | 0.538291 | 1_3:+51606225 | None:intergenic |
| TGGAGCAGCTACACTAGCCT+GGG | 0.539326 | 1_3:+51606312 | None:intergenic |
| TGAGGAGCAGAAGTCGTCGC+TGG | 0.544361 | 1_3:+51606292 | None:intergenic |
| CAAGAAAATGTGGTCGAAGA+GGG | 0.555530 | 1_3:-51606004 | Msa0124100:CDS |
| ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 1_3:-51606259 | Msa0124100:CDS |
| GGTATGGTGCCATAATATCC+AGG | 0.563962 | 1_3:+51606241 | None:intergenic |
| GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 1_3:-51606450 | Msa0124100:CDS |
| TATGGTGGTAAATGATAGCT+CGG | 0.571190 | 1_3:+51606196 | None:intergenic |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 1_3:+51605505 | None:intergenic |
| AATGTGGTCGAAGAGGGTGG+TGG | 0.572688 | 1_3:-51605998 | Msa0124100:CDS |
| TCTGCTGCATCTTCTAGCCA+GGG | 0.572703 | 1_3:-51606349 | Msa0124100:CDS |
| GGAGGAAGGAATGTCCCATA+AGG | 0.575031 | 1_3:+51606217 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 1_3:-51605438 | Msa0124100:CDS |
| CTTAGTGGACGCAGCGACAG+AGG | 0.579770 | 1_3:-51606416 | Msa0124100:CDS |
| GAAACCTAATGGAAAGAGCA+AGG | 0.580306 | 1_3:-51606467 | Msa0124100:CDS |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 1_3:+51605905 | None:intergenic |
| GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 1_3:+51606274 | None:intergenic |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 1_3:-51605920 | Msa0124100:CDS |
| CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 1_3:-51605399 | None:intergenic |
| ACAAGAAAATGTGGTCGAAG+AGG | 0.610168 | 1_3:-51606005 | Msa0124100:CDS |
| GAGAATCTCTCAGATAATCC+GGG | 0.611014 | 1_3:+51605948 | None:intergenic |
| ACCAATTCATCAAAGATAGG+CGG | 0.615254 | 1_3:+51605458 | None:intergenic |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 1_3:-51605517 | Msa0124100:CDS |
| TAATATCCAGGATGTACTGG+AGG | 0.622903 | 1_3:+51606253 | None:intergenic |
| GTAAATGATAGCTCGGAGGA+AGG | 0.623795 | 1_3:+51606203 | None:intergenic |
| CTTCTAGCCAGGGATCACCT+GGG | 0.625749 | 1_3:-51606339 | Msa0124100:CDS |
| GGAAGGAATGTCCCATAAGG+AGG | 0.628012 | 1_3:+51606220 | None:intergenic |
| TGTGGTGGGACTGAATATGG+TGG | 0.638237 | 1_3:+51606181 | None:intergenic |
| ACACTAGCCTGGGAGGACCC+AGG | 0.643294 | 1_3:+51606322 | None:intergenic |
| AAACCTAATGGAAAGAGCAA+GGG | 0.643918 | 1_3:-51606466 | Msa0124100:CDS |
| TTGGAAGACATATGGTGATG+TGG | 0.652180 | 1_3:-51605750 | Msa0124100:CDS |
| GAAAATGTGGTCGAAGAGGG+TGG | 0.661104 | 1_3:-51606001 | Msa0124100:CDS |
| AGCAGCTACACTAGCCTGGG+AGG | 0.667318 | 1_3:+51606315 | None:intergenic |
| ACAGCCCCAACAAGAAAATG+TGG | 0.669400 | 1_3:-51606014 | Msa0124100:CDS |
| AATATCCAGGATGTACTGGA+GGG | 0.686056 | 1_3:+51606254 | None:intergenic |
| ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 1_3:+51606268 | None:intergenic |
| GGTGGTAAATGATAGCTCGG+AGG | 0.751101 | 1_3:+51606199 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+TGG | 0.757504 | 1_3:+51605473 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.763875 | 1_3:-51605496 | Msa0124100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTAACCAATTCATCAAAGAT+AGG | + | chr1_3:51606423-51606442 | None:intergenic | 25.0% |
| ! | TTGATGAATTGGTTAAGTAT+TGG | - | chr1_3:51606427-51606446 | Msa0124100:CDS | 25.0% |
| ! | TGATGAATTGGTTAAGTATT+GGG | - | chr1_3:51606428-51606447 | Msa0124100:CDS | 25.0% |
| ! | TTAACCAATTCATCAAAGAT+AGG | + | chr1_3:51606423-51606442 | None:intergenic | 25.0% |
| ! | TTGATGAATTGGTTAAGTAT+TGG | - | chr1_3:51606427-51606446 | Msa0124100:CDS | 25.0% |
| ! | TGATGAATTGGTTAAGTATT+GGG | - | chr1_3:51606428-51606447 | Msa0124100:CDS | 25.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | - | chr1_3:51605909-51605928 | Msa0124100:intron | 30.0% |
| ATGATAGCAGTTATGAATGA+TGG | + | chr1_3:51606100-51606119 | None:intergenic | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | - | chr1_3:51606106-51606125 | Msa0124100:CDS | 30.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | - | chr1_3:51605909-51605928 | Msa0124100:intron | 30.0% |
| ATGATAGCAGTTATGAATGA+TGG | + | chr1_3:51606100-51606119 | None:intergenic | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | - | chr1_3:51606106-51606125 | Msa0124100:CDS | 30.0% |
| AAACCTAATGGAAAGAGCAA+GGG | - | chr1_3:51605409-51605428 | Msa0124100:CDS | 35.0% | |
| GTAGATGCAGTAAAAATGAC+AGG | + | chr1_3:51605502-51605521 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGATAGCT+CGG | + | chr1_3:51605682-51605701 | None:intergenic | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | + | chr1_3:51605869-51605888 | None:intergenic | 35.0% |
| !! | CATCACTTTTGGAAGACATA+TGG | - | chr1_3:51606117-51606136 | Msa0124100:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | - | chr1_3:51606148-51606167 | Msa0124100:CDS | 35.0% |
| ACCAATTCATCAAAGATAGG+CGG | + | chr1_3:51606420-51606439 | None:intergenic | 35.0% | |
| AAACCTAATGGAAAGAGCAA+GGG | - | chr1_3:51605409-51605428 | Msa0124100:CDS | 35.0% | |
| GTAGATGCAGTAAAAATGAC+AGG | + | chr1_3:51605502-51605521 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGATAGCT+CGG | + | chr1_3:51605682-51605701 | None:intergenic | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | + | chr1_3:51605869-51605888 | None:intergenic | 35.0% |
| !! | CATCACTTTTGGAAGACATA+TGG | - | chr1_3:51606117-51606136 | Msa0124100:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | - | chr1_3:51606148-51606167 | Msa0124100:CDS | 35.0% |
| ACCAATTCATCAAAGATAGG+CGG | + | chr1_3:51606420-51606439 | None:intergenic | 35.0% | |
| CTCTTTCCATTAGGTTTCAG+AGG | + | chr1_3:51605406-51605425 | None:intergenic | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | - | chr1_3:51605408-51605427 | Msa0124100:CDS | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | - | chr1_3:51605444-51605463 | Msa0124100:CDS | 40.0% | |
| CAGTAAAAATGACAGGCATC+GGG | + | chr1_3:51605495-51605514 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+CGG | + | chr1_3:51605496-51605515 | None:intergenic | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | + | chr1_3:51605624-51605643 | None:intergenic | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | + | chr1_3:51605625-51605644 | None:intergenic | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | + | chr1_3:51605628-51605647 | None:intergenic | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | - | chr1_3:51605625-51605644 | Msa0124100:intron | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | + | chr1_3:51605700-51605719 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAAGGT+GGG | + | chr1_3:51605765-51605784 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAAGG+TGG | + | chr1_3:51605766-51605785 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | + | chr1_3:51605776-51605795 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGAAC+AGG | + | chr1_3:51605808-51605827 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr1_3:51605815-51605834 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | + | chr1_3:51605835-51605854 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr1_3:51605815-51605834 | None:intergenic | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | + | chr1_3:51605868-51605887 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | + | chr1_3:51605870-51605889 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | - | chr1_3:51605870-51605889 | Msa0124100:intron | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | - | chr1_3:51605871-51605890 | Msa0124100:intron | 40.0% | |
| GAGAATCTCTCAGATAATCC+GGG | + | chr1_3:51605930-51605949 | None:intergenic | 40.0% | |
| CGAGAATCTCTCAGATAATC+CGG | + | chr1_3:51605931-51605950 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | + | chr1_3:51605973-51605992 | None:intergenic | 40.0% | |
| ! | TTGGAAGACATATGGTGATG+TGG | - | chr1_3:51606125-51606144 | Msa0124100:CDS | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | - | chr1_3:51606154-51606173 | Msa0124100:CDS | 40.0% |
| TAATGCAGACCAAGTGTTCT+TGG | - | chr1_3:51606268-51606287 | Msa0124100:CDS | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | - | chr1_3:51606269-51606288 | Msa0124100:CDS | 40.0% | |
| CCAATTCATCAAAGATAGGC+GGG | + | chr1_3:51606419-51606438 | None:intergenic | 40.0% | |
| CTCTTTCCATTAGGTTTCAG+AGG | + | chr1_3:51605406-51605425 | None:intergenic | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | - | chr1_3:51605408-51605427 | Msa0124100:CDS | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | - | chr1_3:51605444-51605463 | Msa0124100:CDS | 40.0% | |
| CAGTAAAAATGACAGGCATC+GGG | + | chr1_3:51605495-51605514 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+CGG | + | chr1_3:51605496-51605515 | None:intergenic | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | + | chr1_3:51605624-51605643 | None:intergenic | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | + | chr1_3:51605625-51605644 | None:intergenic | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | + | chr1_3:51605628-51605647 | None:intergenic | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | - | chr1_3:51605625-51605644 | Msa0124100:intron | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | + | chr1_3:51605700-51605719 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAAGGT+GGG | + | chr1_3:51605765-51605784 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAAGG+TGG | + | chr1_3:51605766-51605785 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | + | chr1_3:51605776-51605795 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGAAC+AGG | + | chr1_3:51605808-51605827 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr1_3:51605815-51605834 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | + | chr1_3:51605835-51605854 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr1_3:51605815-51605834 | None:intergenic | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | + | chr1_3:51605868-51605887 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | + | chr1_3:51605870-51605889 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | - | chr1_3:51605870-51605889 | Msa0124100:intron | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | - | chr1_3:51605871-51605890 | Msa0124100:intron | 40.0% | |
| GAGAATCTCTCAGATAATCC+GGG | + | chr1_3:51605930-51605949 | None:intergenic | 40.0% | |
| CGAGAATCTCTCAGATAATC+CGG | + | chr1_3:51605931-51605950 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | + | chr1_3:51605973-51605992 | None:intergenic | 40.0% | |
| ! | TTGGAAGACATATGGTGATG+TGG | - | chr1_3:51606125-51606144 | Msa0124100:CDS | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | - | chr1_3:51606154-51606173 | Msa0124100:CDS | 40.0% |
| TAATGCAGACCAAGTGTTCT+TGG | - | chr1_3:51606268-51606287 | Msa0124100:CDS | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | - | chr1_3:51606269-51606288 | Msa0124100:CDS | 40.0% | |
| CCAATTCATCAAAGATAGGC+GGG | + | chr1_3:51606419-51606438 | None:intergenic | 40.0% | |
| TTGCCCTTGCTCTTTCCATT+AGG | + | chr1_3:51605415-51605434 | None:intergenic | 45.0% | |
| !! | GGTATGGTGCCATAATATCC+AGG | + | chr1_3:51605637-51605656 | None:intergenic | 45.0% |
| TATGGCACCATACCTCCTTA+TGG | - | chr1_3:51605643-51605662 | Msa0124100:intron | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | - | chr1_3:51605644-51605663 | Msa0124100:intron | 45.0% | |
| GAATGTCCCATAAGGAGGTA+TGG | + | chr1_3:51605653-51605672 | None:intergenic | 45.0% | |
| GTAAATGATAGCTCGGAGGA+AGG | + | chr1_3:51605675-51605694 | None:intergenic | 45.0% | |
| !! | ATTTGCTGTTGTTGGGGAAG+GGG | + | chr1_3:51605727-51605746 | None:intergenic | 45.0% |
| !! | GATTTGCTGTTGTTGGGGAA+GGG | + | chr1_3:51605728-51605747 | None:intergenic | 45.0% |
| !! | TGGAGGGATTTGCTGTTGTT+GGG | + | chr1_3:51605734-51605753 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | + | chr1_3:51605750-51605769 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | + | chr1_3:51605751-51605770 | None:intergenic | 45.0% |
| !!! | GGAAAAGGTGGGTTTTGTTG+TGG | + | chr1_3:51605754-51605773 | None:intergenic | 45.0% |
| !! | GGGATTTGTTGTTGGGGAAA+AGG | + | chr1_3:51605769-51605788 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | + | chr1_3:51605775-51605794 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | + | chr1_3:51605777-51605796 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr1_3:51605814-51605833 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr1_3:51605816-51605835 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr1_3:51605814-51605833 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr1_3:51605816-51605835 | None:intergenic | 45.0% |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | + | chr1_3:51605862-51605881 | None:intergenic | 45.0% |
| ACAGCCCCAACAAGAAAATG+TGG | - | chr1_3:51605861-51605880 | Msa0124100:intron | 45.0% | |
| !! | CTCGTCGTCGATTCATCTTA+AGG | - | chr1_3:51605947-51605966 | Msa0124100:CDS | 45.0% |
| CGATTCATCTTAAGGCCTAG+TGG | - | chr1_3:51605955-51605974 | Msa0124100:CDS | 45.0% | |
| ! | CAGCTTTTTGCCTAGCAAAC+CGG | - | chr1_3:51606056-51606075 | Msa0124100:CDS | 45.0% |
| TACTTAGAAGAGCCCGTATG+CGG | - | chr1_3:51606358-51606377 | Msa0124100:CDS | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | + | chr1_3:51606374-51606393 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | - | chr1_3:51606379-51606398 | Msa0124100:CDS | 45.0% | |
| CCCGCCTATCTTTGATGAAT+TGG | - | chr1_3:51606416-51606435 | Msa0124100:CDS | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | + | chr1_3:51606478-51606497 | None:intergenic | 45.0% | |
| CCGACAAAGCAAAGAAGAAC+CGG | - | chr1_3:51606475-51606494 | Msa0124100:CDS | 45.0% | |
| TTGCCCTTGCTCTTTCCATT+AGG | + | chr1_3:51605415-51605434 | None:intergenic | 45.0% | |
| !! | GGTATGGTGCCATAATATCC+AGG | + | chr1_3:51605637-51605656 | None:intergenic | 45.0% |
| TATGGCACCATACCTCCTTA+TGG | - | chr1_3:51605643-51605662 | Msa0124100:intron | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | - | chr1_3:51605644-51605663 | Msa0124100:intron | 45.0% | |
| GAATGTCCCATAAGGAGGTA+TGG | + | chr1_3:51605653-51605672 | None:intergenic | 45.0% | |
| GTAAATGATAGCTCGGAGGA+AGG | + | chr1_3:51605675-51605694 | None:intergenic | 45.0% | |
| !! | ATTTGCTGTTGTTGGGGAAG+GGG | + | chr1_3:51605727-51605746 | None:intergenic | 45.0% |
| !! | GATTTGCTGTTGTTGGGGAA+GGG | + | chr1_3:51605728-51605747 | None:intergenic | 45.0% |
| !! | TGGAGGGATTTGCTGTTGTT+GGG | + | chr1_3:51605734-51605753 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | + | chr1_3:51605750-51605769 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | + | chr1_3:51605751-51605770 | None:intergenic | 45.0% |
| !!! | GGAAAAGGTGGGTTTTGTTG+TGG | + | chr1_3:51605754-51605773 | None:intergenic | 45.0% |
| !! | GGGATTTGTTGTTGGGGAAA+AGG | + | chr1_3:51605769-51605788 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | + | chr1_3:51605775-51605794 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | + | chr1_3:51605777-51605796 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr1_3:51605814-51605833 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr1_3:51605816-51605835 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr1_3:51605814-51605833 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr1_3:51605816-51605835 | None:intergenic | 45.0% |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | + | chr1_3:51605862-51605881 | None:intergenic | 45.0% |
| ACAGCCCCAACAAGAAAATG+TGG | - | chr1_3:51605861-51605880 | Msa0124100:intron | 45.0% | |
| !! | CTCGTCGTCGATTCATCTTA+AGG | - | chr1_3:51605947-51605966 | Msa0124100:CDS | 45.0% |
| CGATTCATCTTAAGGCCTAG+TGG | - | chr1_3:51605955-51605974 | Msa0124100:CDS | 45.0% | |
| ! | CAGCTTTTTGCCTAGCAAAC+CGG | - | chr1_3:51606056-51606075 | Msa0124100:CDS | 45.0% |
| TACTTAGAAGAGCCCGTATG+CGG | - | chr1_3:51606358-51606377 | Msa0124100:CDS | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | + | chr1_3:51606374-51606393 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | - | chr1_3:51606379-51606398 | Msa0124100:CDS | 45.0% | |
| CCCGCCTATCTTTGATGAAT+TGG | - | chr1_3:51606416-51606435 | Msa0124100:CDS | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | + | chr1_3:51606478-51606497 | None:intergenic | 45.0% | |
| !! | ATAAAATAAAAATTATGATA+TGG | + | chr1_3:51606201-51606220 | None:intergenic | 5.0% |
| !! | ATAAAATAAAAATTATGATA+TGG | + | chr1_3:51606201-51606220 | None:intergenic | 5.0% |
| ATCTGCTGCATCTTCTAGCC+AGG | - | chr1_3:51605525-51605544 | Msa0124100:CDS | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | - | chr1_3:51605526-51605545 | Msa0124100:CDS | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | + | chr1_3:51605610-51605629 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | + | chr1_3:51605611-51605630 | None:intergenic | 50.0% |
| GGAAGGAATGTCCCATAAGG+AGG | + | chr1_3:51605658-51605677 | None:intergenic | 50.0% | |
| GGAGGAAGGAATGTCCCATA+AGG | + | chr1_3:51605661-51605680 | None:intergenic | 50.0% | |
| GGTGGTAAATGATAGCTCGG+AGG | + | chr1_3:51605679-51605698 | None:intergenic | 50.0% | |
| ! | TGTGGTGGGACTGAATATGG+TGG | + | chr1_3:51605697-51605716 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | + | chr1_3:51605711-51605730 | None:intergenic | 50.0% |
| !! | GGATTTGCTGTTGTTGGGGA+AGG | + | chr1_3:51605729-51605748 | None:intergenic | 50.0% |
| !! | GGAGGGATTTGCTGTTGTTG+GGG | + | chr1_3:51605733-51605752 | None:intergenic | 50.0% |
| !! | GTGGAGGGATTTGCTGTTGT+TGG | + | chr1_3:51605735-51605754 | None:intergenic | 50.0% |
| !!! | CAGGTGGGTTTTGTTGTGGA+GGG | + | chr1_3:51605789-51605808 | None:intergenic | 50.0% |
| !!! | ACAGGTGGGTTTTGTTGTGG+AGG | + | chr1_3:51605790-51605809 | None:intergenic | 50.0% |
| !!! | GGAACAGGTGGGTTTTGTTG+TGG | + | chr1_3:51605793-51605812 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAACAGGT+GGG | + | chr1_3:51605804-51605823 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAACAGG+TGG | + | chr1_3:51605805-51605824 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | + | chr1_3:51605831-51605850 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | + | chr1_3:51605832-51605851 | None:intergenic | 50.0% |
| TTTCTTGTTGGGGCTGTGGT+GGG | + | chr1_3:51605858-51605877 | None:intergenic | 50.0% | |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | + | chr1_3:51605859-51605878 | None:intergenic | 50.0% |
| GAAAATGTGGTCGAAGAGGG+TGG | - | chr1_3:51605874-51605893 | Msa0124100:intron | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | + | chr1_3:51606078-51606097 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | + | chr1_3:51606280-51606299 | None:intergenic | 50.0% | |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | - | chr1_3:51606332-51606351 | Msa0124100:CDS | 50.0% |
| TGTCTCCTCAAACCGCATAC+GGG | + | chr1_3:51606373-51606392 | None:intergenic | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | - | chr1_3:51606388-51606407 | Msa0124100:CDS | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | - | chr1_3:51606393-51606412 | Msa0124100:CDS | 50.0% | |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | - | chr1_3:51606437-51606456 | Msa0124100:CDS | 50.0% |
| ATCTGCTGCATCTTCTAGCC+AGG | - | chr1_3:51605525-51605544 | Msa0124100:CDS | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | - | chr1_3:51605526-51605545 | Msa0124100:CDS | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | + | chr1_3:51605610-51605629 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | + | chr1_3:51605611-51605630 | None:intergenic | 50.0% |
| GGAAGGAATGTCCCATAAGG+AGG | + | chr1_3:51605658-51605677 | None:intergenic | 50.0% | |
| GGAGGAAGGAATGTCCCATA+AGG | + | chr1_3:51605661-51605680 | None:intergenic | 50.0% | |
| GGTGGTAAATGATAGCTCGG+AGG | + | chr1_3:51605679-51605698 | None:intergenic | 50.0% | |
| ! | TGTGGTGGGACTGAATATGG+TGG | + | chr1_3:51605697-51605716 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | + | chr1_3:51605711-51605730 | None:intergenic | 50.0% |
| !! | GGATTTGCTGTTGTTGGGGA+AGG | + | chr1_3:51605729-51605748 | None:intergenic | 50.0% |
| !! | GGAGGGATTTGCTGTTGTTG+GGG | + | chr1_3:51605733-51605752 | None:intergenic | 50.0% |
| !! | GTGGAGGGATTTGCTGTTGT+TGG | + | chr1_3:51605735-51605754 | None:intergenic | 50.0% |
| !!! | CAGGTGGGTTTTGTTGTGGA+GGG | + | chr1_3:51605789-51605808 | None:intergenic | 50.0% |
| !!! | ACAGGTGGGTTTTGTTGTGG+AGG | + | chr1_3:51605790-51605809 | None:intergenic | 50.0% |
| !!! | GGAACAGGTGGGTTTTGTTG+TGG | + | chr1_3:51605793-51605812 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAACAGGT+GGG | + | chr1_3:51605804-51605823 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAACAGG+TGG | + | chr1_3:51605805-51605824 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | + | chr1_3:51605831-51605850 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | + | chr1_3:51605832-51605851 | None:intergenic | 50.0% |
| TTTCTTGTTGGGGCTGTGGT+GGG | + | chr1_3:51605858-51605877 | None:intergenic | 50.0% | |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | + | chr1_3:51605859-51605878 | None:intergenic | 50.0% |
| GAAAATGTGGTCGAAGAGGG+TGG | - | chr1_3:51605874-51605893 | Msa0124100:intron | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | + | chr1_3:51606078-51606097 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | + | chr1_3:51606280-51606299 | None:intergenic | 50.0% | |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | - | chr1_3:51606332-51606351 | Msa0124100:CDS | 50.0% |
| TGTCTCCTCAAACCGCATAC+GGG | + | chr1_3:51606373-51606392 | None:intergenic | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | - | chr1_3:51606388-51606407 | Msa0124100:CDS | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | - | chr1_3:51606393-51606412 | Msa0124100:CDS | 50.0% | |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | - | chr1_3:51606437-51606456 | Msa0124100:CDS | 50.0% |
| GAAAGAGCAAGGGCAACAGC+AGG | - | chr1_3:51605419-51605438 | Msa0124100:CDS | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | - | chr1_3:51605535-51605554 | Msa0124100:CDS | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | - | chr1_3:51605536-51605555 | Msa0124100:CDS | 55.0% | |
| ! | TGGAGCAGCTACACTAGCCT+GGG | + | chr1_3:51605566-51605585 | None:intergenic | 55.0% |
| GGGCACATGTAAGTGGGATG+AGG | + | chr1_3:51605604-51605623 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | - | chr1_3:51605616-51605635 | Msa0124100:intron | 55.0% | |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | + | chr1_3:51605712-51605731 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | + | chr1_3:51605715-51605734 | None:intergenic | 55.0% |
| AATGTGGTCGAAGAGGGTGG+TGG | - | chr1_3:51605877-51605896 | Msa0124100:intron | 55.0% | |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | - | chr1_3:51606164-51606183 | Msa0124100:CDS | 55.0% |
| AAGAGCCCGTATGCGGTTTG+AGG | - | chr1_3:51606365-51606384 | Msa0124100:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | + | chr1_3:51606405-51606424 | None:intergenic | 55.0% | |
| GAAAGAGCAAGGGCAACAGC+AGG | - | chr1_3:51605419-51605438 | Msa0124100:CDS | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | - | chr1_3:51605535-51605554 | Msa0124100:CDS | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | - | chr1_3:51605536-51605555 | Msa0124100:CDS | 55.0% | |
| ! | TGGAGCAGCTACACTAGCCT+GGG | + | chr1_3:51605566-51605585 | None:intergenic | 55.0% |
| GGGCACATGTAAGTGGGATG+AGG | + | chr1_3:51605604-51605623 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | - | chr1_3:51605616-51605635 | Msa0124100:intron | 55.0% | |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | + | chr1_3:51605712-51605731 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | + | chr1_3:51605715-51605734 | None:intergenic | 55.0% |
| AATGTGGTCGAAGAGGGTGG+TGG | - | chr1_3:51605877-51605896 | Msa0124100:intron | 55.0% | |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | - | chr1_3:51606164-51606183 | Msa0124100:CDS | 55.0% |
| AAGAGCCCGTATGCGGTTTG+AGG | - | chr1_3:51606365-51606384 | Msa0124100:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | + | chr1_3:51606405-51606424 | None:intergenic | 55.0% | |
| GCAAGGGCAACAGCAGGAAG+CGG | - | chr1_3:51605425-51605444 | Msa0124100:CDS | 60.0% | |
| ! | CTTAGTGGACGCAGCGACAG+AGG | - | chr1_3:51605459-51605478 | Msa0124100:CDS | 60.0% |
| ! | AGCAGCTACACTAGCCTGGG+AGG | + | chr1_3:51605563-51605582 | None:intergenic | 60.0% |
| CTGGAGCAGCTACACTAGCC+TGG | + | chr1_3:51605567-51605586 | None:intergenic | 60.0% | |
| TGAGGAGCAGAAGTCGTCGC+TGG | + | chr1_3:51605586-51605605 | None:intergenic | 60.0% | |
| GCTGTTGTTGGGGAAGGGGA+AGG | + | chr1_3:51605723-51605742 | None:intergenic | 60.0% | |
| !! | GCTTCAGCAGCCGGTTTGCT+AGG | + | chr1_3:51606069-51606088 | None:intergenic | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | - | chr1_3:51606446-51606465 | Msa0124100:CDS | 60.0% |
| GCAAGGGCAACAGCAGGAAG+CGG | - | chr1_3:51605425-51605444 | Msa0124100:CDS | 60.0% | |
| ! | CTTAGTGGACGCAGCGACAG+AGG | - | chr1_3:51605459-51605478 | Msa0124100:CDS | 60.0% |
| ! | AGCAGCTACACTAGCCTGGG+AGG | + | chr1_3:51605563-51605582 | None:intergenic | 60.0% |
| CTGGAGCAGCTACACTAGCC+TGG | + | chr1_3:51605567-51605586 | None:intergenic | 60.0% | |
| TGAGGAGCAGAAGTCGTCGC+TGG | + | chr1_3:51605586-51605605 | None:intergenic | 60.0% | |
| GCTGTTGTTGGGGAAGGGGA+AGG | + | chr1_3:51605723-51605742 | None:intergenic | 60.0% | |
| !! | GCTTCAGCAGCCGGTTTGCT+AGG | + | chr1_3:51606069-51606088 | None:intergenic | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | - | chr1_3:51606446-51606465 | Msa0124100:CDS | 60.0% |
| ! | ACACTAGCCTGGGAGGACCC+AGG | + | chr1_3:51605556-51605575 | None:intergenic | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | - | chr1_3:51605885-51605904 | Msa0124100:intron | 65.0% |
| ! | ACACTAGCCTGGGAGGACCC+AGG | + | chr1_3:51605556-51605575 | None:intergenic | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | - | chr1_3:51605885-51605904 | Msa0124100:intron | 65.0% |
| GGGAGGACCCAGGTGATCCC+TGG | + | chr1_3:51605546-51605565 | None:intergenic | 70.0% | |
| GGGATCACCTGGGTCCTCCC+AGG | - | chr1_3:51605546-51605565 | Msa0124100:CDS | 70.0% | |
| GGGAGGACCCAGGTGATCCC+TGG | + | chr1_3:51605546-51605565 | None:intergenic | 70.0% | |
| GGGATCACCTGGGTCCTCCC+AGG | - | chr1_3:51605546-51605565 | Msa0124100:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 51605400 | 51606497 | 51605400 | ID=Msa0124100;Name=Msa0124100 |
| chr1_3 | mRNA | 51605400 | 51606497 | 51605400 | ID=Msa0124100-mRNA-1;Parent=Msa0124100;Name=Msa0124100-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|1|0.33|1|1|0.66|3|0|311 |
| chr1_3 | exon | 51605914 | 51606497 | 51605914 | ID=Msa0124100-mRNA-1:exon:15801;Parent=Msa0124100-mRNA-1 |
| chr1_3 | exon | 51605712 | 51605838 | 51605712 | ID=Msa0124100-mRNA-1:exon:15800;Parent=Msa0124100-mRNA-1 |
| chr1_3 | exon | 51605400 | 51605621 | 51605400 | ID=Msa0124100-mRNA-1:exon:15799;Parent=Msa0124100-mRNA-1 |
| chr1_3 | CDS | 51605914 | 51606497 | 51605914 | ID=Msa0124100-mRNA-1:cds;Parent=Msa0124100-mRNA-1 |
| chr1_3 | CDS | 51605712 | 51605838 | 51605712 | ID=Msa0124100-mRNA-1:cds;Parent=Msa0124100-mRNA-1 |
| chr1_3 | CDS | 51605400 | 51605621 | 51605400 | ID=Msa0124100-mRNA-1:cds;Parent=Msa0124100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
