Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0028380 | Msa0028480 | 0.915233 | 7.505856e-85 | -8.615850e-47 |
| Msa0028480 | Msa0124100 | 0.916071 | 2.766061e-85 | -8.615850e-47 |
| Msa0028480 | Msa0124150 | 0.926117 | 7.276798e-91 | -8.615850e-47 |
| Msa0028480 | Msa0360510 | 0.804940 | 1.697055e-49 | -8.615850e-47 |
| Msa0028480 | Msa0384800 | 0.811289 | 7.541836e-51 | -8.615850e-47 |
| Msa0028480 | Msa0414420 | 0.809815 | 1.570352e-50 | -8.615850e-47 |
| Msa0028480 | Msa0450000 | 0.808376 | 3.192881e-50 | -8.615850e-47 |
| Msa0028480 | Msa0452900 | 0.818961 | 1.491085e-52 | -8.615850e-47 |
| Msa0028480 | Msa0564890 | 0.817821 | 2.702903e-52 | -8.615850e-47 |
| Msa0028480 | Msa0726140 | 0.831442 | 1.665217e-55 | -8.615850e-47 |
| Msa0028480 | Msa0745060 | 0.811350 | 7.314672e-51 | -8.615850e-47 |
| Msa0028480 | Msa0825860 | 0.818246 | 2.167061e-52 | -8.615850e-47 |
| Msa0028480 | Msa0846350 | 0.817875 | 2.628596e-52 | -8.615850e-47 |
| Msa0028480 | Msa0865320 | 0.801674 | 8.053375e-49 | -8.615850e-47 |
| Msa0028480 | Msa0884150 | 0.801845 | 7.429389e-49 | -8.615850e-47 |
| Msa0028480 | Msa0907260 | 0.805413 | 1.350824e-49 | -8.615850e-47 |
| Msa0028480 | Msa0956940 | 0.800105 | 1.684798e-48 | -8.615850e-47 |
| Msa0028480 | Msa0986360 | 0.812905 | 3.350790e-51 | -8.615850e-47 |
| Msa0028480 | Msa1016280 | 0.814407 | 1.564845e-51 | -8.615850e-47 |
| Msa0028480 | Msa1025360 | 0.803950 | 2.729035e-49 | -8.615850e-47 |
| Msa0028480 | Msa1044830 | 0.802585 | 5.232030e-49 | -8.615850e-47 |
| Msa0028480 | Msa1044840 | 0.800388 | 1.475616e-48 | -8.615850e-47 |
| Msa0028480 | Msa1092990 | 0.800902 | 1.159178e-48 | -8.615850e-47 |
| Msa0028480 | Msa1109440 | 0.807534 | 4.823540e-50 | -8.615850e-47 |
| Msa0028480 | Msa1136090 | 0.812137 | 4.931270e-51 | -8.615850e-47 |
| Msa0028480 | Msa1269670 | 0.816360 | 5.757313e-52 | -8.615850e-47 |
| Msa0028480 | Msa1285930 | 0.811392 | 7.162100e-51 | -8.615850e-47 |
| Msa0028480 | Msa1287800 | 0.805770 | 1.137204e-49 | -8.615850e-47 |
| Msa0028480 | Msa1287810 | 0.825481 | 4.579677e-54 | -8.615850e-47 |
| Msa0028480 | Msa1404000 | 0.810810 | 9.576955e-51 | -8.615850e-47 |
| Msa0028480 | Msa1433120 | 0.802537 | 5.351989e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0028480 | MtrunA17_Chr4g0010341 | 69.136 | 324 | 74 | 4 | 1 | 311 | 1 | 311 | 1.03e-112 | 335 |
| Msa0028480 | MtrunA17_Chr0c01g0489551 | 64.898 | 245 | 71 | 2 | 1 | 236 | 1 | 239 | 1.73e-79 | 241 |
| Msa0028480 | MtrunA17_Chr3g0086081 | 57.391 | 115 | 49 | 0 | 197 | 311 | 1 | 115 | 6.66e-42 | 148 |
| Msa0028480 | MtrunA17_Chr1g0179631 | 30.519 | 154 | 90 | 5 | 166 | 310 | 491 | 636 | 1.11e-18 | 86.7 |
| Msa0028480 | MtrunA17_Chr4g0025081 | 29.242 | 277 | 178 | 10 | 44 | 311 | 93 | 360 | 1.42e-17 | 82.8 |
| Msa0028480 | MtrunA17_Chr1g0179111 | 31.200 | 125 | 85 | 1 | 176 | 299 | 234 | 358 | 1.07e-15 | 77.4 |
| Msa0028480 | MtrunA17_Chr1g0176161 | 28.405 | 257 | 170 | 8 | 62 | 311 | 38 | 287 | 9.06e-15 | 74.7 |
| Msa0028480 | MtrunA17_Chr8g0345501 | 25.600 | 125 | 90 | 1 | 186 | 310 | 410 | 531 | 2.73e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 1_1:-53440597 | Msa0028480:intron |
| GTGGAGGGATTTGCTGTTGT+TGG | 0.239379 | 1_1:+53441029 | None:intergenic |
| TGGAGGGATTTGCTGTTGTT+GGG | 0.276492 | 1_1:+53441030 | None:intergenic |
| TGATGAATTGGTTAAGTATT+GGG | 0.285226 | 1_1:-53440333 | Msa0028480:CDS |
| TTGTGGAGGGATTTGTTGTT+GGG | 0.288260 | 1_1:+53440988 | None:intergenic |
| CCCGCCTATCTTTGATGAAT+TGG | 0.292649 | 1_1:-53440345 | Msa0028480:CDS |
| TATGGCACCATACCTCCTTA+TGG | 0.295998 | 1_1:-53441118 | Msa0028480:CDS |
| TTGCCCTTGCTCTTTCCATT+AGG | 0.302043 | 1_1:+53441349 | None:intergenic |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 1_1:-53440655 | Msa0028480:CDS |
| GTTGTGGAGGGATTTGTTGT+TGG | 0.342061 | 1_1:+53440987 | None:intergenic |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 1_1:-53440493 | Msa0028480:intron |
| CCGGTTCTTCTTTGCTTTGT+CGG | 0.346522 | 1_1:+53440286 | None:intergenic |
| GGATTTGCTGTTGTTGGGGA+AGG | 0.353536 | 1_1:+53441035 | None:intergenic |
| CCAGTACATCCTGGATATTA+TGG | 0.365206 | 1_1:-53441136 | Msa0028480:CDS |
| TCTTCTAGCCAGGGATCACC+TGG | 0.378638 | 1_1:-53441226 | Msa0028480:CDS |
| GGGATTTGTTGTTGGGGAAA+AGG | 0.385872 | 1_1:+53440995 | None:intergenic |
| GGAATGCCTCTGAAACCTAA+TGG | 0.389273 | 1_1:-53441364 | Msa0028480:CDS |
| CGAGAATCTCTCAGATAATC+CGG | 0.394695 | 1_1:+53440833 | None:intergenic |
| ATTTGCTGTTGTTGGGGAAG+GGG | 0.399109 | 1_1:+53441037 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 1_1:+53440390 | None:intergenic |
| ATCTGCTGCATCTTCTAGCC+AGG | 0.410992 | 1_1:-53441236 | Msa0028480:CDS |
| GCTGTTGTTGGGGAAGGGGA+AGG | 0.412477 | 1_1:+53441041 | None:intergenic |
| TTTGTTGTTGGGGAAAAGGT+GGG | 0.414770 | 1_1:+53440999 | None:intergenic |
| TTGATGAATTGGTTAAGTAT+TGG | 0.416006 | 1_1:-53440334 | Msa0028480:CDS |
| TGTTGTTGTTGGGGTTGTGG+TGG | 0.418549 | 1_1:+53440932 | None:intergenic |
| GTTGTTGTTGGGGTTGTGGT+GGG | 0.422252 | 1_1:+53440933 | None:intergenic |
| CCGACAAAGCAAAGAAGAAC+CGG | 0.424122 | 1_1:-53440286 | Msa0028480:CDS |
| ATGGCACCATACCTCCTTAT+GGG | 0.425132 | 1_1:-53441117 | Msa0028480:CDS |
| CTGGAGCAGCTACACTAGCC+TGG | 0.431529 | 1_1:+53441197 | None:intergenic |
| TGTTGTTGTTGGGGAACAGG+TGG | 0.434610 | 1_1:+53440959 | None:intergenic |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 1_1:-53440492 | Msa0028480:intron |
| GTTGTTGTTGGGGAACAGGT+GGG | 0.436449 | 1_1:+53440960 | None:intergenic |
| CTCTTTCCATTAGGTTTCAG+AGG | 0.440822 | 1_1:+53441358 | None:intergenic |
| GATTTGCTGTTGTTGGGGAA+GGG | 0.443203 | 1_1:+53441036 | None:intergenic |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 1_1:-53440814 | Msa0028480:CDS |
| TTTCTTGTTGGGGCTGTGGT+GGG | 0.448866 | 1_1:+53440906 | None:intergenic |
| TTAACCAATTCATCAAAGAT+AGG | 0.456166 | 1_1:+53440341 | None:intergenic |
| CCATAATATCCAGGATGTAC+TGG | 0.458343 | 1_1:+53441136 | None:intergenic |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 1_1:+53440686 | None:intergenic |
| ATTTGTTGTTGGGGAAAAGG+TGG | 0.464163 | 1_1:+53440998 | None:intergenic |
| GGGAGGACCCAGGTGATCCC+TGG | 0.467266 | 1_1:+53441218 | None:intergenic |
| CACAGCTTCCCAAGAACACT+TGG | 0.469604 | 1_1:+53440484 | None:intergenic |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 1_1:-53440396 | Msa0028480:CDS |
| GCTTCAGCAGCCGGTTTGCT+AGG | 0.476808 | 1_1:+53440695 | None:intergenic |
| CGAAGAGGGTGGTGGAGAGC+TGG | 0.490661 | 1_1:-53440876 | Msa0028480:CDS |
| GGGATCACCTGGGTCCTCCC+AGG | 0.492872 | 1_1:-53441215 | Msa0028480:CDS |
| GCGGTATAATACTCACTTAG+TGG | 0.494631 | 1_1:-53441317 | Msa0028480:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 1_1:-53440315 | Msa0028480:CDS |
| GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 1_1:-53441342 | Msa0028480:CDS |
| TGTGGAGGGATTTGTTGTTG+GGG | 0.508078 | 1_1:+53440989 | None:intergenic |
| GGAGGGATTTGCTGTTGTTG+GGG | 0.514390 | 1_1:+53441031 | None:intergenic |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 1_1:+53440664 | None:intergenic |
| AGACAAGAAAGCGGCCACAT+TGG | 0.524562 | 1_1:-53440373 | Msa0028480:CDS |
| AGAAAGCGGCCACATTGGAT+TGG | 0.531391 | 1_1:-53440368 | Msa0028480:CDS |
| TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 1_1:+53441153 | None:intergenic |
| CCAATTCATCAAAGATAGGC+GGG | 0.535490 | 1_1:+53440345 | None:intergenic |
| GAATGTCCCATAAGGAGGTA+TGG | 0.538291 | 1_1:+53441111 | None:intergenic |
| TGGAGCAGCTACACTAGCCT+GGG | 0.539326 | 1_1:+53441198 | None:intergenic |
| TGAGGAGCAGAAGTCGTCGC+TGG | 0.544361 | 1_1:+53441178 | None:intergenic |
| CAAGAAAATGTGGTCGAAGA+GGG | 0.555530 | 1_1:-53440890 | Msa0028480:CDS |
| ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 1_1:-53441145 | Msa0028480:CDS |
| GGTATGGTGCCATAATATCC+AGG | 0.563962 | 1_1:+53441127 | None:intergenic |
| GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 1_1:-53441336 | Msa0028480:CDS |
| TATGGTGGTAAATGATAGCT+CGG | 0.571190 | 1_1:+53441082 | None:intergenic |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 1_1:+53440391 | None:intergenic |
| AATGTGGTCGAAGAGGGTGG+TGG | 0.572688 | 1_1:-53440884 | Msa0028480:CDS |
| TCTGCTGCATCTTCTAGCCA+GGG | 0.572703 | 1_1:-53441235 | Msa0028480:CDS |
| GGAGGAAGGAATGTCCCATA+AGG | 0.575031 | 1_1:+53441103 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 1_1:-53440324 | Msa0028480:CDS |
| CTTAGTGGACGCAGCGACAG+AGG | 0.579770 | 1_1:-53441302 | Msa0028480:CDS |
| GAAACCTAATGGAAAGAGCA+AGG | 0.580306 | 1_1:-53441353 | Msa0028480:CDS |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 1_1:+53440791 | None:intergenic |
| GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 1_1:+53441160 | None:intergenic |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 1_1:-53440806 | Msa0028480:CDS |
| CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 1_1:-53440285 | None:intergenic |
| ACAAGAAAATGTGGTCGAAG+AGG | 0.610168 | 1_1:-53440891 | Msa0028480:CDS |
| GAGAATCTCTCAGATAATCC+GGG | 0.611014 | 1_1:+53440834 | None:intergenic |
| ACCAATTCATCAAAGATAGG+CGG | 0.615254 | 1_1:+53440344 | None:intergenic |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 1_1:-53440403 | Msa0028480:CDS |
| TAATATCCAGGATGTACTGG+AGG | 0.622903 | 1_1:+53441139 | None:intergenic |
| GTAAATGATAGCTCGGAGGA+AGG | 0.623795 | 1_1:+53441089 | None:intergenic |
| CTTCTAGCCAGGGATCACCT+GGG | 0.625749 | 1_1:-53441225 | Msa0028480:CDS |
| GGAAGGAATGTCCCATAAGG+AGG | 0.628012 | 1_1:+53441106 | None:intergenic |
| TGTGGTGGGACTGAATATGG+TGG | 0.638237 | 1_1:+53441067 | None:intergenic |
| ACACTAGCCTGGGAGGACCC+AGG | 0.643294 | 1_1:+53441208 | None:intergenic |
| AAACCTAATGGAAAGAGCAA+GGG | 0.643918 | 1_1:-53441352 | Msa0028480:CDS |
| TTGGAAGACATATGGTGATG+TGG | 0.652180 | 1_1:-53440636 | Msa0028480:CDS |
| GAAAATGTGGTCGAAGAGGG+TGG | 0.661104 | 1_1:-53440887 | Msa0028480:CDS |
| AGCAGCTACACTAGCCTGGG+AGG | 0.667318 | 1_1:+53441201 | None:intergenic |
| ACAGCCCCAACAAGAAAATG+TGG | 0.669400 | 1_1:-53440900 | Msa0028480:CDS |
| AATATCCAGGATGTACTGGA+GGG | 0.686056 | 1_1:+53441140 | None:intergenic |
| ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 1_1:+53441154 | None:intergenic |
| GGTGGTAAATGATAGCTCGG+AGG | 0.751101 | 1_1:+53441085 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+TGG | 0.757504 | 1_1:+53440359 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.763875 | 1_1:-53440382 | Msa0028480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTAACCAATTCATCAAAGAT+AGG | + | chr1_1:53441309-53441328 | None:intergenic | 25.0% |
| ! | TTGATGAATTGGTTAAGTAT+TGG | - | chr1_1:53441313-53441332 | Msa0028480:CDS | 25.0% |
| ! | TGATGAATTGGTTAAGTATT+GGG | - | chr1_1:53441314-53441333 | Msa0028480:CDS | 25.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | - | chr1_1:53440795-53440814 | Msa0028480:intron | 30.0% |
| ATGATAGCAGTTATGAATGA+TGG | + | chr1_1:53440986-53441005 | None:intergenic | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | - | chr1_1:53440992-53441011 | Msa0028480:CDS | 30.0% |
| AAACCTAATGGAAAGAGCAA+GGG | - | chr1_1:53440295-53440314 | Msa0028480:CDS | 35.0% | |
| GTAGATGCAGTAAAAATGAC+AGG | + | chr1_1:53440388-53440407 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGATAGCT+CGG | + | chr1_1:53440568-53440587 | None:intergenic | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | + | chr1_1:53440755-53440774 | None:intergenic | 35.0% |
| !! | CATCACTTTTGGAAGACATA+TGG | - | chr1_1:53441003-53441022 | Msa0028480:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | - | chr1_1:53441034-53441053 | Msa0028480:CDS | 35.0% |
| ACCAATTCATCAAAGATAGG+CGG | + | chr1_1:53441306-53441325 | None:intergenic | 35.0% | |
| CTCTTTCCATTAGGTTTCAG+AGG | + | chr1_1:53440292-53440311 | None:intergenic | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | - | chr1_1:53440294-53440313 | Msa0028480:CDS | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | - | chr1_1:53440330-53440349 | Msa0028480:CDS | 40.0% | |
| CAGTAAAAATGACAGGCATC+GGG | + | chr1_1:53440381-53440400 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+CGG | + | chr1_1:53440382-53440401 | None:intergenic | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | + | chr1_1:53440510-53440529 | None:intergenic | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | + | chr1_1:53440511-53440530 | None:intergenic | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | + | chr1_1:53440514-53440533 | None:intergenic | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | - | chr1_1:53440511-53440530 | Msa0028480:intron | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | + | chr1_1:53440586-53440605 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAAGGT+GGG | + | chr1_1:53440651-53440670 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAAGG+TGG | + | chr1_1:53440652-53440671 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | + | chr1_1:53440662-53440681 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGAAC+AGG | + | chr1_1:53440694-53440713 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr1_1:53440701-53440720 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | + | chr1_1:53440721-53440740 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr1_1:53440701-53440720 | None:intergenic | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | + | chr1_1:53440754-53440773 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | + | chr1_1:53440756-53440775 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | - | chr1_1:53440756-53440775 | Msa0028480:intron | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | - | chr1_1:53440757-53440776 | Msa0028480:intron | 40.0% | |
| GAGAATCTCTCAGATAATCC+GGG | + | chr1_1:53440816-53440835 | None:intergenic | 40.0% | |
| CGAGAATCTCTCAGATAATC+CGG | + | chr1_1:53440817-53440836 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | + | chr1_1:53440859-53440878 | None:intergenic | 40.0% | |
| ! | TTGGAAGACATATGGTGATG+TGG | - | chr1_1:53441011-53441030 | Msa0028480:CDS | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | - | chr1_1:53441040-53441059 | Msa0028480:CDS | 40.0% |
| TAATGCAGACCAAGTGTTCT+TGG | - | chr1_1:53441154-53441173 | Msa0028480:CDS | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | - | chr1_1:53441155-53441174 | Msa0028480:CDS | 40.0% | |
| CCAATTCATCAAAGATAGGC+GGG | + | chr1_1:53441305-53441324 | None:intergenic | 40.0% | |
| TTGCCCTTGCTCTTTCCATT+AGG | + | chr1_1:53440301-53440320 | None:intergenic | 45.0% | |
| !! | GGTATGGTGCCATAATATCC+AGG | + | chr1_1:53440523-53440542 | None:intergenic | 45.0% |
| TATGGCACCATACCTCCTTA+TGG | - | chr1_1:53440529-53440548 | Msa0028480:intron | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | - | chr1_1:53440530-53440549 | Msa0028480:intron | 45.0% | |
| GAATGTCCCATAAGGAGGTA+TGG | + | chr1_1:53440539-53440558 | None:intergenic | 45.0% | |
| GTAAATGATAGCTCGGAGGA+AGG | + | chr1_1:53440561-53440580 | None:intergenic | 45.0% | |
| !! | ATTTGCTGTTGTTGGGGAAG+GGG | + | chr1_1:53440613-53440632 | None:intergenic | 45.0% |
| !! | GATTTGCTGTTGTTGGGGAA+GGG | + | chr1_1:53440614-53440633 | None:intergenic | 45.0% |
| !! | TGGAGGGATTTGCTGTTGTT+GGG | + | chr1_1:53440620-53440639 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | + | chr1_1:53440636-53440655 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | + | chr1_1:53440637-53440656 | None:intergenic | 45.0% |
| !!! | GGAAAAGGTGGGTTTTGTTG+TGG | + | chr1_1:53440640-53440659 | None:intergenic | 45.0% |
| !! | GGGATTTGTTGTTGGGGAAA+AGG | + | chr1_1:53440655-53440674 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | + | chr1_1:53440661-53440680 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | + | chr1_1:53440663-53440682 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr1_1:53440700-53440719 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr1_1:53440702-53440721 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr1_1:53440700-53440719 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr1_1:53440702-53440721 | None:intergenic | 45.0% |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | + | chr1_1:53440748-53440767 | None:intergenic | 45.0% |
| ACAGCCCCAACAAGAAAATG+TGG | - | chr1_1:53440747-53440766 | Msa0028480:intron | 45.0% | |
| !! | CTCGTCGTCGATTCATCTTA+AGG | - | chr1_1:53440833-53440852 | Msa0028480:CDS | 45.0% |
| CGATTCATCTTAAGGCCTAG+TGG | - | chr1_1:53440841-53440860 | Msa0028480:CDS | 45.0% | |
| ! | CAGCTTTTTGCCTAGCAAAC+CGG | - | chr1_1:53440942-53440961 | Msa0028480:CDS | 45.0% |
| TACTTAGAAGAGCCCGTATG+CGG | - | chr1_1:53441244-53441263 | Msa0028480:CDS | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | + | chr1_1:53441260-53441279 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | - | chr1_1:53441265-53441284 | Msa0028480:CDS | 45.0% | |
| CCCGCCTATCTTTGATGAAT+TGG | - | chr1_1:53441302-53441321 | Msa0028480:CDS | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | + | chr1_1:53441364-53441383 | None:intergenic | 45.0% | |
| !! | ATAAAATAAAAATTATGATA+TGG | + | chr1_1:53441087-53441106 | None:intergenic | 5.0% |
| ATCTGCTGCATCTTCTAGCC+AGG | - | chr1_1:53440411-53440430 | Msa0028480:CDS | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | - | chr1_1:53440412-53440431 | Msa0028480:CDS | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | + | chr1_1:53440496-53440515 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | + | chr1_1:53440497-53440516 | None:intergenic | 50.0% |
| GGAAGGAATGTCCCATAAGG+AGG | + | chr1_1:53440544-53440563 | None:intergenic | 50.0% | |
| GGAGGAAGGAATGTCCCATA+AGG | + | chr1_1:53440547-53440566 | None:intergenic | 50.0% | |
| GGTGGTAAATGATAGCTCGG+AGG | + | chr1_1:53440565-53440584 | None:intergenic | 50.0% | |
| ! | TGTGGTGGGACTGAATATGG+TGG | + | chr1_1:53440583-53440602 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | + | chr1_1:53440597-53440616 | None:intergenic | 50.0% |
| !! | GGATTTGCTGTTGTTGGGGA+AGG | + | chr1_1:53440615-53440634 | None:intergenic | 50.0% |
| !! | GGAGGGATTTGCTGTTGTTG+GGG | + | chr1_1:53440619-53440638 | None:intergenic | 50.0% |
| !! | GTGGAGGGATTTGCTGTTGT+TGG | + | chr1_1:53440621-53440640 | None:intergenic | 50.0% |
| !!! | CAGGTGGGTTTTGTTGTGGA+GGG | + | chr1_1:53440675-53440694 | None:intergenic | 50.0% |
| !!! | ACAGGTGGGTTTTGTTGTGG+AGG | + | chr1_1:53440676-53440695 | None:intergenic | 50.0% |
| !!! | GGAACAGGTGGGTTTTGTTG+TGG | + | chr1_1:53440679-53440698 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAACAGGT+GGG | + | chr1_1:53440690-53440709 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAACAGG+TGG | + | chr1_1:53440691-53440710 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | + | chr1_1:53440717-53440736 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | + | chr1_1:53440718-53440737 | None:intergenic | 50.0% |
| TTTCTTGTTGGGGCTGTGGT+GGG | + | chr1_1:53440744-53440763 | None:intergenic | 50.0% | |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | + | chr1_1:53440745-53440764 | None:intergenic | 50.0% |
| GAAAATGTGGTCGAAGAGGG+TGG | - | chr1_1:53440760-53440779 | Msa0028480:intron | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | + | chr1_1:53440964-53440983 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | + | chr1_1:53441166-53441185 | None:intergenic | 50.0% | |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | - | chr1_1:53441218-53441237 | Msa0028480:CDS | 50.0% |
| TGTCTCCTCAAACCGCATAC+GGG | + | chr1_1:53441259-53441278 | None:intergenic | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | - | chr1_1:53441274-53441293 | Msa0028480:CDS | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | - | chr1_1:53441279-53441298 | Msa0028480:CDS | 50.0% | |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | - | chr1_1:53441323-53441342 | Msa0028480:CDS | 50.0% |
| GAAAGAGCAAGGGCAACAGC+AGG | - | chr1_1:53440305-53440324 | Msa0028480:CDS | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | - | chr1_1:53440421-53440440 | Msa0028480:CDS | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | - | chr1_1:53440422-53440441 | Msa0028480:CDS | 55.0% | |
| ! | TGGAGCAGCTACACTAGCCT+GGG | + | chr1_1:53440452-53440471 | None:intergenic | 55.0% |
| GGGCACATGTAAGTGGGATG+AGG | + | chr1_1:53440490-53440509 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | - | chr1_1:53440502-53440521 | Msa0028480:intron | 55.0% | |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | + | chr1_1:53440598-53440617 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | + | chr1_1:53440601-53440620 | None:intergenic | 55.0% |
| AATGTGGTCGAAGAGGGTGG+TGG | - | chr1_1:53440763-53440782 | Msa0028480:intron | 55.0% | |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | - | chr1_1:53441050-53441069 | Msa0028480:CDS | 55.0% |
| AAGAGCCCGTATGCGGTTTG+AGG | - | chr1_1:53441251-53441270 | Msa0028480:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | + | chr1_1:53441291-53441310 | None:intergenic | 55.0% | |
| GCAAGGGCAACAGCAGGAAG+CGG | - | chr1_1:53440311-53440330 | Msa0028480:CDS | 60.0% | |
| ! | CTTAGTGGACGCAGCGACAG+AGG | - | chr1_1:53440345-53440364 | Msa0028480:CDS | 60.0% |
| ! | AGCAGCTACACTAGCCTGGG+AGG | + | chr1_1:53440449-53440468 | None:intergenic | 60.0% |
| CTGGAGCAGCTACACTAGCC+TGG | + | chr1_1:53440453-53440472 | None:intergenic | 60.0% | |
| TGAGGAGCAGAAGTCGTCGC+TGG | + | chr1_1:53440472-53440491 | None:intergenic | 60.0% | |
| GCTGTTGTTGGGGAAGGGGA+AGG | + | chr1_1:53440609-53440628 | None:intergenic | 60.0% | |
| !! | GCTTCAGCAGCCGGTTTGCT+AGG | + | chr1_1:53440955-53440974 | None:intergenic | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | - | chr1_1:53441332-53441351 | Msa0028480:CDS | 60.0% |
| ! | ACACTAGCCTGGGAGGACCC+AGG | + | chr1_1:53440442-53440461 | None:intergenic | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | - | chr1_1:53440771-53440790 | Msa0028480:intron | 65.0% |
| GGGAGGACCCAGGTGATCCC+TGG | + | chr1_1:53440432-53440451 | None:intergenic | 70.0% | |
| GGGATCACCTGGGTCCTCCC+AGG | - | chr1_1:53440432-53440451 | Msa0028480:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 53440286 | 53441383 | 53440286 | ID=Msa0028480;Name=Msa0028480 |
| chr1_1 | mRNA | 53440286 | 53441383 | 53440286 | ID=Msa0028480-mRNA-1;Parent=Msa0028480;Name=Msa0028480-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|1|0.33|1|1|0.66|3|0|311 |
| chr1_1 | exon | 53440800 | 53441383 | 53440800 | ID=Msa0028480-mRNA-1:exon:15726;Parent=Msa0028480-mRNA-1 |
| chr1_1 | exon | 53440598 | 53440724 | 53440598 | ID=Msa0028480-mRNA-1:exon:15725;Parent=Msa0028480-mRNA-1 |
| chr1_1 | exon | 53440286 | 53440507 | 53440286 | ID=Msa0028480-mRNA-1:exon:15724;Parent=Msa0028480-mRNA-1 |
| chr1_1 | CDS | 53440800 | 53441383 | 53440800 | ID=Msa0028480-mRNA-1:cds;Parent=Msa0028480-mRNA-1 |
| chr1_1 | CDS | 53440598 | 53440724 | 53440598 | ID=Msa0028480-mRNA-1:cds;Parent=Msa0028480-mRNA-1 |
| chr1_1 | CDS | 53440286 | 53440507 | 53440286 | ID=Msa0028480-mRNA-1:cds;Parent=Msa0028480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
