Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124150 | RHN59169.1 | 69.136 | 324 | 74 | 4 | 1 | 311 | 1 | 311 | 1.12e-108 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124150 | A0A396I0R2 | 69.136 | 324 | 74 | 4 | 1 | 311 | 1 | 311 | 5.33e-109 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0124150 | 0.808845 | 2.535657e-50 | -8.615850e-47 |
| Msa0028380 | Msa0124150 | 0.963010 | 1.451772e-121 | -8.615850e-47 |
| Msa0028480 | Msa0124150 | 0.926117 | 7.276798e-91 | -8.615850e-47 |
| Msa0102070 | Msa0124150 | 0.814129 | 1.802788e-51 | -8.615850e-47 |
| Msa0110260 | Msa0124150 | 0.803349 | 3.636466e-49 | -8.615850e-47 |
| Msa0110270 | Msa0124150 | 0.803020 | 4.253680e-49 | -8.615850e-47 |
| Msa0124100 | Msa0124150 | 0.967311 | 4.200375e-127 | -8.615850e-47 |
| Msa0124150 | Msa0145750 | 0.812152 | 4.894057e-51 | -8.615850e-47 |
| Msa0124150 | Msa0267000 | 0.828907 | 6.924373e-55 | -8.615850e-47 |
| Msa0124150 | Msa0267010 | 0.827260 | 1.725668e-54 | -8.615850e-47 |
| Msa0124150 | Msa0342240 | 0.822194 | 2.698942e-53 | -8.615850e-47 |
| Msa0124150 | Msa0360510 | 0.839835 | 1.249229e-57 | -8.615850e-47 |
| Msa0124150 | Msa0384800 | 0.801289 | 9.660557e-49 | -8.615850e-47 |
| Msa0124150 | Msa0414420 | 0.838153 | 3.405648e-57 | -8.615850e-47 |
| Msa0124150 | Msa0450000 | 0.801222 | 9.971310e-49 | -8.615850e-47 |
| Msa0124150 | Msa0452900 | 0.852098 | 5.770098e-61 | -8.615850e-47 |
| Msa0124150 | Msa0453120 | 0.807685 | 4.480852e-50 | -8.615850e-47 |
| Msa0124150 | Msa0564890 | 0.818002 | 2.460011e-52 | -8.615850e-47 |
| Msa0124150 | Msa0726140 | 0.821827 | 3.281788e-53 | -8.615850e-47 |
| Msa0124150 | Msa0729800 | 0.800762 | 1.237639e-48 | -8.615850e-47 |
| Msa0124150 | Msa0743810 | 0.827246 | 1.739165e-54 | -8.615850e-47 |
| Msa0124150 | Msa0745060 | 0.834725 | 2.538012e-56 | -8.615850e-47 |
| Msa0124150 | Msa0783160 | 0.820221 | 7.689768e-53 | -8.615850e-47 |
| Msa0124150 | Msa0787600 | 0.822066 | 2.889483e-53 | -8.615850e-47 |
| Msa0124150 | Msa0825860 | 0.830510 | 2.820101e-55 | -8.615850e-47 |
| Msa0124150 | Msa0846350 | 0.821375 | 4.176068e-53 | -8.615850e-47 |
| Msa0124150 | Msa0865320 | 0.811629 | 6.363567e-51 | -8.615850e-47 |
| Msa0124150 | Msa0888370 | 0.805329 | 1.407052e-49 | -8.615850e-47 |
| Msa0124150 | Msa0956940 | 0.810274 | 1.250624e-50 | -8.615850e-47 |
| Msa0124150 | Msa0981370 | 0.801927 | 7.145463e-49 | -8.615850e-47 |
| Msa0124150 | Msa0989060 | 0.811607 | 6.432067e-51 | -8.615850e-47 |
| Msa0124150 | Msa1016280 | 0.825650 | 4.176185e-54 | -8.615850e-47 |
| Msa0124150 | Msa1025360 | 0.839805 | 1.272167e-57 | -8.615850e-47 |
| Msa0124150 | Msa1025370 | 0.833482 | 5.199493e-56 | -8.615850e-47 |
| Msa0124150 | Msa1044830 | 0.836202 | 1.074693e-56 | -8.615850e-47 |
| Msa0124150 | Msa1044840 | 0.833570 | 4.944753e-56 | -8.615850e-47 |
| Msa0124150 | Msa1092990 | 0.813045 | 3.122812e-51 | -8.615850e-47 |
| Msa0124150 | Msa1100980 | 0.816243 | 6.115233e-52 | -8.615850e-47 |
| Msa0124150 | Msa1121200 | 0.805097 | 1.573114e-49 | -8.615850e-47 |
| Msa0124150 | Msa1146110 | 0.814361 | 1.602253e-51 | -8.615850e-47 |
| Msa0124150 | Msa1187940 | 0.816447 | 5.504360e-52 | -8.615850e-47 |
| Msa0124150 | Msa1192640 | 0.813080 | 3.067276e-51 | -8.615850e-47 |
| Msa0124150 | Msa1269670 | 0.830211 | 3.337275e-55 | -8.615850e-47 |
| Msa0124150 | Msa1270230 | 0.830847 | 2.331881e-55 | -8.615850e-47 |
| Msa0124150 | Msa1270240 | 0.821997 | 2.998675e-53 | -8.615850e-47 |
| Msa0124150 | Msa1270270 | 0.813636 | 2.315188e-51 | -8.615850e-47 |
| Msa0124150 | Msa1283330 | 0.835066 | 2.083008e-56 | -8.615850e-47 |
| Msa0124150 | Msa1285930 | 0.831369 | 1.736000e-55 | -8.615850e-47 |
| Msa0124150 | Msa1287800 | 0.833452 | 5.288907e-56 | -8.615850e-47 |
| Msa0124150 | Msa1287810 | 0.853164 | 2.863307e-61 | -8.615850e-47 |
| Msa0124150 | Msa1289420 | 0.812616 | 3.876535e-51 | -8.615850e-47 |
| Msa0124150 | Msa1404000 | 0.820392 | 7.025933e-53 | -8.615850e-47 |
| Msa0124150 | Msa1415310 | 0.801985 | 6.954053e-49 | -8.615850e-47 |
| Msa0124150 | Msa1422180 | 0.809259 | 2.067120e-50 | -8.615850e-47 |
| Msa0124150 | Msa1433120 | 0.808676 | 2.755228e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0124150 | MtrunA17_Chr4g0010341 | 69.136 | 324 | 74 | 4 | 1 | 311 | 1 | 311 | 1.03e-112 | 335 |
| Msa0124150 | MtrunA17_Chr0c01g0489551 | 64.898 | 245 | 71 | 2 | 1 | 236 | 1 | 239 | 1.73e-79 | 241 |
| Msa0124150 | MtrunA17_Chr3g0086081 | 57.391 | 115 | 49 | 0 | 197 | 311 | 1 | 115 | 6.66e-42 | 148 |
| Msa0124150 | MtrunA17_Chr1g0179631 | 30.519 | 154 | 90 | 5 | 166 | 310 | 491 | 636 | 1.11e-18 | 86.7 |
| Msa0124150 | MtrunA17_Chr4g0025081 | 29.242 | 277 | 178 | 10 | 44 | 311 | 93 | 360 | 1.42e-17 | 82.8 |
| Msa0124150 | MtrunA17_Chr1g0179111 | 31.200 | 125 | 85 | 1 | 176 | 299 | 234 | 358 | 1.07e-15 | 77.4 |
| Msa0124150 | MtrunA17_Chr1g0176161 | 28.405 | 257 | 170 | 8 | 62 | 311 | 38 | 287 | 9.06e-15 | 74.7 |
| Msa0124150 | MtrunA17_Chr8g0345501 | 25.600 | 125 | 90 | 1 | 186 | 310 | 410 | 531 | 2.73e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGCTGGTTTAGGCTCTTTC+AGG | 0.183435 | 1_3:-51710024 | Msa0124150:intron |
| GTGGAGGGATTTGCTGTTGT+TGG | 0.239379 | 1_3:+51710456 | None:intergenic |
| TGGAGGGATTTGCTGTTGTT+GGG | 0.276492 | 1_3:+51710457 | None:intergenic |
| TGATGAATTGGTTAAGTATT+GGG | 0.285226 | 1_3:-51709760 | Msa0124150:CDS |
| TTGTGGAGGGATTTGTTGTT+GGG | 0.288260 | 1_3:+51710415 | None:intergenic |
| CCCGCCTATCTTTGATGAAT+TGG | 0.292649 | 1_3:-51709772 | Msa0124150:CDS |
| TATGGCACCATACCTCCTTA+TGG | 0.295998 | 1_3:-51710545 | Msa0124150:CDS |
| TTGCCCTTGCTCTTTCCATT+AGG | 0.302043 | 1_3:+51710776 | None:intergenic |
| ATAACTGCTATCATCACTTT+TGG | 0.303053 | 1_3:-51710082 | Msa0124150:CDS |
| GTTGTGGAGGGATTTGTTGT+TGG | 0.342061 | 1_3:+51710414 | None:intergenic |
| TAATGCAGACCAAGTGTTCT+TGG | 0.346146 | 1_3:-51709920 | Msa0124150:intron |
| CCGGTTCTTCTTTGCTTTGT+CGG | 0.346522 | 1_3:+51709713 | None:intergenic |
| GGATTTGCTGTTGTTGGGGA+AGG | 0.353536 | 1_3:+51710462 | None:intergenic |
| CCAGTACATCCTGGATATTA+TGG | 0.365206 | 1_3:-51710563 | Msa0124150:CDS |
| TCTTCTAGCCAGGGATCACC+TGG | 0.378638 | 1_3:-51710653 | Msa0124150:CDS |
| GGGATTTGTTGTTGGGGAAA+AGG | 0.385872 | 1_3:+51710422 | None:intergenic |
| GGAATGCCTCTGAAACCTAA+TGG | 0.389273 | 1_3:-51710791 | Msa0124150:CDS |
| CGAGAATCTCTCAGATAATC+CGG | 0.394695 | 1_3:+51710260 | None:intergenic |
| ATTTGCTGTTGTTGGGGAAG+GGG | 0.399109 | 1_3:+51710464 | None:intergenic |
| TTGTCTCCTCAAACCGCATA+CGG | 0.400455 | 1_3:+51709817 | None:intergenic |
| ATCTGCTGCATCTTCTAGCC+AGG | 0.410992 | 1_3:-51710663 | Msa0124150:CDS |
| GCTGTTGTTGGGGAAGGGGA+AGG | 0.412477 | 1_3:+51710468 | None:intergenic |
| TTTGTTGTTGGGGAAAAGGT+GGG | 0.414770 | 1_3:+51710426 | None:intergenic |
| TTGATGAATTGGTTAAGTAT+TGG | 0.416006 | 1_3:-51709761 | Msa0124150:CDS |
| TGTTGTTGTTGGGGTTGTGG+TGG | 0.418549 | 1_3:+51710359 | None:intergenic |
| GTTGTTGTTGGGGTTGTGGT+GGG | 0.422252 | 1_3:+51710360 | None:intergenic |
| CCGACAAAGCAAAGAAGAAC+CGG | 0.424122 | 1_3:-51709713 | Msa0124150:CDS |
| ATGGCACCATACCTCCTTAT+GGG | 0.425132 | 1_3:-51710544 | Msa0124150:CDS |
| CTGGAGCAGCTACACTAGCC+TGG | 0.431529 | 1_3:+51710624 | None:intergenic |
| TGTTGTTGTTGGGGAACAGG+TGG | 0.434610 | 1_3:+51710386 | None:intergenic |
| AATGCAGACCAAGTGTTCTT+GGG | 0.435174 | 1_3:-51709919 | Msa0124150:intron |
| GTTGTTGTTGGGGAACAGGT+GGG | 0.436449 | 1_3:+51710387 | None:intergenic |
| CTCTTTCCATTAGGTTTCAG+AGG | 0.440822 | 1_3:+51710785 | None:intergenic |
| GATTTGCTGTTGTTGGGGAA+GGG | 0.443203 | 1_3:+51710463 | None:intergenic |
| CTCGTCGTCGATTCATCTTA+AGG | 0.445948 | 1_3:-51710241 | Msa0124150:CDS |
| TTTCTTGTTGGGGCTGTGGT+GGG | 0.448866 | 1_3:+51710333 | None:intergenic |
| TTAACCAATTCATCAAAGAT+AGG | 0.456166 | 1_3:+51709768 | None:intergenic |
| CCATAATATCCAGGATGTAC+TGG | 0.458343 | 1_3:+51710563 | None:intergenic |
| GATCTGATTGCTTCAGCAGC+CGG | 0.463673 | 1_3:+51710113 | None:intergenic |
| ATTTGTTGTTGGGGAAAAGG+TGG | 0.464163 | 1_3:+51710425 | None:intergenic |
| GGGAGGACCCAGGTGATCCC+TGG | 0.467266 | 1_3:+51710645 | None:intergenic |
| CACAGCTTCCCAAGAACACT+TGG | 0.469604 | 1_3:+51709911 | None:intergenic |
| AAGAGCCCGTATGCGGTTTG+AGG | 0.473397 | 1_3:-51709823 | Msa0124150:CDS |
| GCTTCAGCAGCCGGTTTGCT+AGG | 0.476808 | 1_3:+51710122 | None:intergenic |
| CGAAGAGGGTGGTGGAGAGC+TGG | 0.490661 | 1_3:-51710303 | Msa0124150:CDS |
| GGGATCACCTGGGTCCTCCC+AGG | 0.492872 | 1_3:-51710642 | Msa0124150:CDS |
| GCGGTATAATACTCACTTAG+TGG | 0.494631 | 1_3:-51710744 | Msa0124150:CDS |
| TTGGGCGTCTGAGGCGTTCA+AGG | 0.500299 | 1_3:-51709742 | Msa0124150:CDS |
| GAAAGAGCAAGGGCAACAGC+AGG | 0.505028 | 1_3:-51710769 | Msa0124150:CDS |
| TGTGGAGGGATTTGTTGTTG+GGG | 0.508078 | 1_3:+51710416 | None:intergenic |
| GGAGGGATTTGCTGTTGTTG+GGG | 0.514390 | 1_3:+51710458 | None:intergenic |
| ATGATAGCAGTTATGAATGA+TGG | 0.523463 | 1_3:+51710091 | None:intergenic |
| AGACAAGAAAGCGGCCACAT+TGG | 0.524562 | 1_3:-51709800 | Msa0124150:CDS |
| AGAAAGCGGCCACATTGGAT+TGG | 0.531391 | 1_3:-51709795 | Msa0124150:CDS |
| TACTGGAGGGCACATGTAAG+TGG | 0.532234 | 1_3:+51710580 | None:intergenic |
| CCAATTCATCAAAGATAGGC+GGG | 0.535490 | 1_3:+51709772 | None:intergenic |
| GAATGTCCCATAAGGAGGTA+TGG | 0.538291 | 1_3:+51710538 | None:intergenic |
| TGGAGCAGCTACACTAGCCT+GGG | 0.539326 | 1_3:+51710625 | None:intergenic |
| TGAGGAGCAGAAGTCGTCGC+TGG | 0.544361 | 1_3:+51710605 | None:intergenic |
| CAAGAAAATGTGGTCGAAGA+GGG | 0.555530 | 1_3:-51710317 | Msa0124150:CDS |
| ATGTGCCCTCCAGTACATCC+TGG | 0.557262 | 1_3:-51710572 | Msa0124150:CDS |
| GGTATGGTGCCATAATATCC+AGG | 0.563962 | 1_3:+51710554 | None:intergenic |
| GCAAGGGCAACAGCAGGAAG+CGG | 0.568162 | 1_3:-51710763 | Msa0124150:CDS |
| TATGGTGGTAAATGATAGCT+CGG | 0.571190 | 1_3:+51710509 | None:intergenic |
| TGTCTCCTCAAACCGCATAC+GGG | 0.571839 | 1_3:+51709818 | None:intergenic |
| AATGTGGTCGAAGAGGGTGG+TGG | 0.572688 | 1_3:-51710311 | Msa0124150:CDS |
| TCTGCTGCATCTTCTAGCCA+GGG | 0.572703 | 1_3:-51710662 | Msa0124150:CDS |
| GGAGGAAGGAATGTCCCATA+AGG | 0.575031 | 1_3:+51710530 | None:intergenic |
| GGTTAAGTATTGGGCGTCTG+AGG | 0.575914 | 1_3:-51709751 | Msa0124150:CDS |
| CTTAGTGGACGCAGCGACAG+AGG | 0.579770 | 1_3:-51710729 | Msa0124150:CDS |
| GAAACCTAATGGAAAGAGCA+AGG | 0.580306 | 1_3:-51710780 | Msa0124150:CDS |
| TGAACTTACGAGTTTCCACT+AGG | 0.589440 | 1_3:+51710218 | None:intergenic |
| GGGCACATGTAAGTGGGATG+AGG | 0.589794 | 1_3:+51710587 | None:intergenic |
| CGATTCATCTTAAGGCCTAG+TGG | 0.601629 | 1_3:-51710233 | Msa0124150:CDS |
| CGACAAAGCAAAGAAGAACC+GGG | 0.601764 | 1_3:-51709712 | None:intergenic |
| ACAAGAAAATGTGGTCGAAG+AGG | 0.610168 | 1_3:-51710318 | Msa0124150:CDS |
| GAGAATCTCTCAGATAATCC+GGG | 0.611014 | 1_3:+51710261 | None:intergenic |
| ACCAATTCATCAAAGATAGG+CGG | 0.615254 | 1_3:+51709771 | None:intergenic |
| TACTTAGAAGAGCCCGTATG+CGG | 0.616606 | 1_3:-51709830 | Msa0124150:CDS |
| TAATATCCAGGATGTACTGG+AGG | 0.622903 | 1_3:+51710566 | None:intergenic |
| GTAAATGATAGCTCGGAGGA+AGG | 0.623795 | 1_3:+51710516 | None:intergenic |
| CTTCTAGCCAGGGATCACCT+GGG | 0.625749 | 1_3:-51710652 | Msa0124150:CDS |
| GGAAGGAATGTCCCATAAGG+AGG | 0.628012 | 1_3:+51710533 | None:intergenic |
| TGTGGTGGGACTGAATATGG+TGG | 0.638237 | 1_3:+51710494 | None:intergenic |
| ACACTAGCCTGGGAGGACCC+AGG | 0.643294 | 1_3:+51710635 | None:intergenic |
| AAACCTAATGGAAAGAGCAA+GGG | 0.643918 | 1_3:-51710779 | Msa0124150:CDS |
| TTGGAAGACATATGGTGATG+TGG | 0.652180 | 1_3:-51710063 | Msa0124150:CDS |
| GAAAATGTGGTCGAAGAGGG+TGG | 0.661104 | 1_3:-51710314 | Msa0124150:CDS |
| AGCAGCTACACTAGCCTGGG+AGG | 0.667318 | 1_3:+51710628 | None:intergenic |
| ACAGCCCCAACAAGAAAATG+TGG | 0.669400 | 1_3:-51710327 | Msa0124150:CDS |
| AATATCCAGGATGTACTGGA+GGG | 0.686056 | 1_3:+51710567 | None:intergenic |
| ACTGGAGGGCACATGTAAGT+GGG | 0.711086 | 1_3:+51710581 | None:intergenic |
| GGTGGTAAATGATAGCTCGG+AGG | 0.751101 | 1_3:+51710512 | None:intergenic |
| ATAGGCGGGCCAATCCAATG+TGG | 0.757504 | 1_3:+51709786 | None:intergenic |
| GGTTTGAGGAGACAAGAAAG+CGG | 0.763875 | 1_3:-51709809 | Msa0124150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTAACCAATTCATCAAAGAT+AGG | + | chr1_3:51710736-51710755 | None:intergenic | 25.0% |
| ! | TTGATGAATTGGTTAAGTAT+TGG | - | chr1_3:51710740-51710759 | Msa0124150:CDS | 25.0% |
| ! | TGATGAATTGGTTAAGTATT+GGG | - | chr1_3:51710741-51710760 | Msa0124150:CDS | 25.0% |
| ! | TTAACCAATTCATCAAAGAT+AGG | + | chr1_3:51710736-51710755 | None:intergenic | 25.0% |
| ! | TTGATGAATTGGTTAAGTAT+TGG | - | chr1_3:51710740-51710759 | Msa0124150:CDS | 25.0% |
| ! | TGATGAATTGGTTAAGTATT+GGG | - | chr1_3:51710741-51710760 | Msa0124150:CDS | 25.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | - | chr1_3:51710222-51710241 | Msa0124150:intron | 30.0% |
| ATGATAGCAGTTATGAATGA+TGG | + | chr1_3:51710413-51710432 | None:intergenic | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | - | chr1_3:51710419-51710438 | Msa0124150:CDS | 30.0% |
| ! | GTTGTTTAATGATGTTTTCC+CGG | - | chr1_3:51710222-51710241 | Msa0124150:intron | 30.0% |
| ATGATAGCAGTTATGAATGA+TGG | + | chr1_3:51710413-51710432 | None:intergenic | 30.0% | |
| ! | ATAACTGCTATCATCACTTT+TGG | - | chr1_3:51710419-51710438 | Msa0124150:CDS | 30.0% |
| AAACCTAATGGAAAGAGCAA+GGG | - | chr1_3:51709722-51709741 | Msa0124150:CDS | 35.0% | |
| GTAGATGCAGTAAAAATGAC+AGG | + | chr1_3:51709815-51709834 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGATAGCT+CGG | + | chr1_3:51709995-51710014 | None:intergenic | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | + | chr1_3:51710182-51710201 | None:intergenic | 35.0% |
| !! | CATCACTTTTGGAAGACATA+TGG | - | chr1_3:51710430-51710449 | Msa0124150:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | - | chr1_3:51710461-51710480 | Msa0124150:CDS | 35.0% |
| ACCAATTCATCAAAGATAGG+CGG | + | chr1_3:51710733-51710752 | None:intergenic | 35.0% | |
| AAACCTAATGGAAAGAGCAA+GGG | - | chr1_3:51709722-51709741 | Msa0124150:CDS | 35.0% | |
| GTAGATGCAGTAAAAATGAC+AGG | + | chr1_3:51709815-51709834 | None:intergenic | 35.0% | |
| TATGGTGGTAAATGATAGCT+CGG | + | chr1_3:51709995-51710014 | None:intergenic | 35.0% | |
| ! | TTCGACCACATTTTCTTGTT+GGG | + | chr1_3:51710182-51710201 | None:intergenic | 35.0% |
| !! | CATCACTTTTGGAAGACATA+TGG | - | chr1_3:51710430-51710449 | Msa0124150:CDS | 35.0% |
| ! | ATGATAATGAAAAAGAGCGC+TGG | - | chr1_3:51710461-51710480 | Msa0124150:CDS | 35.0% |
| ACCAATTCATCAAAGATAGG+CGG | + | chr1_3:51710733-51710752 | None:intergenic | 35.0% | |
| CTCTTTCCATTAGGTTTCAG+AGG | + | chr1_3:51709719-51709738 | None:intergenic | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | - | chr1_3:51709721-51709740 | Msa0124150:CDS | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | - | chr1_3:51709757-51709776 | Msa0124150:CDS | 40.0% | |
| CAGTAAAAATGACAGGCATC+GGG | + | chr1_3:51709808-51709827 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+CGG | + | chr1_3:51709809-51709828 | None:intergenic | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | + | chr1_3:51709937-51709956 | None:intergenic | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | + | chr1_3:51709938-51709957 | None:intergenic | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | + | chr1_3:51709941-51709960 | None:intergenic | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | - | chr1_3:51709938-51709957 | Msa0124150:intron | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | + | chr1_3:51710013-51710032 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAAGGT+GGG | + | chr1_3:51710078-51710097 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAAGG+TGG | + | chr1_3:51710079-51710098 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | + | chr1_3:51710089-51710108 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGAAC+AGG | + | chr1_3:51710121-51710140 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr1_3:51710128-51710147 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | + | chr1_3:51710148-51710167 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr1_3:51710128-51710147 | None:intergenic | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | + | chr1_3:51710181-51710200 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | + | chr1_3:51710183-51710202 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | - | chr1_3:51710183-51710202 | Msa0124150:intron | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | - | chr1_3:51710184-51710203 | Msa0124150:intron | 40.0% | |
| GAGAATCTCTCAGATAATCC+GGG | + | chr1_3:51710243-51710262 | None:intergenic | 40.0% | |
| CGAGAATCTCTCAGATAATC+CGG | + | chr1_3:51710244-51710263 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | + | chr1_3:51710286-51710305 | None:intergenic | 40.0% | |
| ! | TTGGAAGACATATGGTGATG+TGG | - | chr1_3:51710438-51710457 | Msa0124150:CDS | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | - | chr1_3:51710467-51710486 | Msa0124150:CDS | 40.0% |
| TAATGCAGACCAAGTGTTCT+TGG | - | chr1_3:51710581-51710600 | Msa0124150:CDS | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | - | chr1_3:51710582-51710601 | Msa0124150:CDS | 40.0% | |
| CCAATTCATCAAAGATAGGC+GGG | + | chr1_3:51710732-51710751 | None:intergenic | 40.0% | |
| CTCTTTCCATTAGGTTTCAG+AGG | + | chr1_3:51709719-51709738 | None:intergenic | 40.0% | |
| GAAACCTAATGGAAAGAGCA+AGG | - | chr1_3:51709721-51709740 | Msa0124150:CDS | 40.0% | |
| GCGGTATAATACTCACTTAG+TGG | - | chr1_3:51709757-51709776 | Msa0124150:CDS | 40.0% | |
| CAGTAAAAATGACAGGCATC+GGG | + | chr1_3:51709808-51709827 | None:intergenic | 40.0% | |
| GCAGTAAAAATGACAGGCAT+CGG | + | chr1_3:51709809-51709828 | None:intergenic | 40.0% | |
| AATATCCAGGATGTACTGGA+GGG | + | chr1_3:51709937-51709956 | None:intergenic | 40.0% | |
| TAATATCCAGGATGTACTGG+AGG | + | chr1_3:51709938-51709957 | None:intergenic | 40.0% | |
| CCATAATATCCAGGATGTAC+TGG | + | chr1_3:51709941-51709960 | None:intergenic | 40.0% | |
| CCAGTACATCCTGGATATTA+TGG | - | chr1_3:51709938-51709957 | Msa0124150:intron | 40.0% | |
| !! | TTTTGTGGTGGGACTGAATA+TGG | + | chr1_3:51710013-51710032 | None:intergenic | 40.0% |
| !! | TTTGTTGTTGGGGAAAAGGT+GGG | + | chr1_3:51710078-51710097 | None:intergenic | 40.0% |
| !! | ATTTGTTGTTGGGGAAAAGG+TGG | + | chr1_3:51710079-51710098 | None:intergenic | 40.0% |
| !! | TTGTGGAGGGATTTGTTGTT+GGG | + | chr1_3:51710089-51710108 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGAAC+AGG | + | chr1_3:51710121-51710140 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr1_3:51710128-51710147 | None:intergenic | 40.0% |
| !!! | TTTTGTTGTTGTTGGGGTTG+TGG | + | chr1_3:51710148-51710167 | None:intergenic | 40.0% |
| !!! | TGGTGGGTTTTGTTGTTGTT+GGG | + | chr1_3:51710128-51710147 | None:intergenic | 40.0% |
| ! | TCGACCACATTTTCTTGTTG+GGG | + | chr1_3:51710181-51710200 | None:intergenic | 40.0% |
| ! | CTTCGACCACATTTTCTTGT+TGG | + | chr1_3:51710183-51710202 | None:intergenic | 40.0% |
| ACAAGAAAATGTGGTCGAAG+AGG | - | chr1_3:51710183-51710202 | Msa0124150:intron | 40.0% | |
| CAAGAAAATGTGGTCGAAGA+GGG | - | chr1_3:51710184-51710203 | Msa0124150:intron | 40.0% | |
| GAGAATCTCTCAGATAATCC+GGG | + | chr1_3:51710243-51710262 | None:intergenic | 40.0% | |
| CGAGAATCTCTCAGATAATC+CGG | + | chr1_3:51710244-51710263 | None:intergenic | 40.0% | |
| TGAACTTACGAGTTTCCACT+AGG | + | chr1_3:51710286-51710305 | None:intergenic | 40.0% | |
| ! | TTGGAAGACATATGGTGATG+TGG | - | chr1_3:51710438-51710457 | Msa0124150:CDS | 40.0% |
| !! | ATGAAAAAGAGCGCTGGTTT+AGG | - | chr1_3:51710467-51710486 | Msa0124150:CDS | 40.0% |
| TAATGCAGACCAAGTGTTCT+TGG | - | chr1_3:51710581-51710600 | Msa0124150:CDS | 40.0% | |
| AATGCAGACCAAGTGTTCTT+GGG | - | chr1_3:51710582-51710601 | Msa0124150:CDS | 40.0% | |
| CCAATTCATCAAAGATAGGC+GGG | + | chr1_3:51710732-51710751 | None:intergenic | 40.0% | |
| TTGCCCTTGCTCTTTCCATT+AGG | + | chr1_3:51709728-51709747 | None:intergenic | 45.0% | |
| !! | GGTATGGTGCCATAATATCC+AGG | + | chr1_3:51709950-51709969 | None:intergenic | 45.0% |
| TATGGCACCATACCTCCTTA+TGG | - | chr1_3:51709956-51709975 | Msa0124150:intron | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | - | chr1_3:51709957-51709976 | Msa0124150:intron | 45.0% | |
| GAATGTCCCATAAGGAGGTA+TGG | + | chr1_3:51709966-51709985 | None:intergenic | 45.0% | |
| GTAAATGATAGCTCGGAGGA+AGG | + | chr1_3:51709988-51710007 | None:intergenic | 45.0% | |
| !! | ATTTGCTGTTGTTGGGGAAG+GGG | + | chr1_3:51710040-51710059 | None:intergenic | 45.0% |
| !! | GATTTGCTGTTGTTGGGGAA+GGG | + | chr1_3:51710041-51710060 | None:intergenic | 45.0% |
| !! | TGGAGGGATTTGCTGTTGTT+GGG | + | chr1_3:51710047-51710066 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | + | chr1_3:51710063-51710082 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | + | chr1_3:51710064-51710083 | None:intergenic | 45.0% |
| !!! | GGAAAAGGTGGGTTTTGTTG+TGG | + | chr1_3:51710067-51710086 | None:intergenic | 45.0% |
| !! | GGGATTTGTTGTTGGGGAAA+AGG | + | chr1_3:51710082-51710101 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | + | chr1_3:51710088-51710107 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | + | chr1_3:51710090-51710109 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr1_3:51710127-51710146 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr1_3:51710129-51710148 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr1_3:51710127-51710146 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr1_3:51710129-51710148 | None:intergenic | 45.0% |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | + | chr1_3:51710175-51710194 | None:intergenic | 45.0% |
| ACAGCCCCAACAAGAAAATG+TGG | - | chr1_3:51710174-51710193 | Msa0124150:intron | 45.0% | |
| !! | CTCGTCGTCGATTCATCTTA+AGG | - | chr1_3:51710260-51710279 | Msa0124150:CDS | 45.0% |
| CGATTCATCTTAAGGCCTAG+TGG | - | chr1_3:51710268-51710287 | Msa0124150:CDS | 45.0% | |
| ! | CAGCTTTTTGCCTAGCAAAC+CGG | - | chr1_3:51710369-51710388 | Msa0124150:CDS | 45.0% |
| TACTTAGAAGAGCCCGTATG+CGG | - | chr1_3:51710671-51710690 | Msa0124150:CDS | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | + | chr1_3:51710687-51710706 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | - | chr1_3:51710692-51710711 | Msa0124150:CDS | 45.0% | |
| CCCGCCTATCTTTGATGAAT+TGG | - | chr1_3:51710729-51710748 | Msa0124150:CDS | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | + | chr1_3:51710791-51710810 | None:intergenic | 45.0% | |
| CCGACAAAGCAAAGAAGAAC+CGG | - | chr1_3:51710788-51710807 | Msa0124150:CDS | 45.0% | |
| TTGCCCTTGCTCTTTCCATT+AGG | + | chr1_3:51709728-51709747 | None:intergenic | 45.0% | |
| !! | GGTATGGTGCCATAATATCC+AGG | + | chr1_3:51709950-51709969 | None:intergenic | 45.0% |
| TATGGCACCATACCTCCTTA+TGG | - | chr1_3:51709956-51709975 | Msa0124150:intron | 45.0% | |
| ATGGCACCATACCTCCTTAT+GGG | - | chr1_3:51709957-51709976 | Msa0124150:intron | 45.0% | |
| GAATGTCCCATAAGGAGGTA+TGG | + | chr1_3:51709966-51709985 | None:intergenic | 45.0% | |
| GTAAATGATAGCTCGGAGGA+AGG | + | chr1_3:51709988-51710007 | None:intergenic | 45.0% | |
| !! | ATTTGCTGTTGTTGGGGAAG+GGG | + | chr1_3:51710040-51710059 | None:intergenic | 45.0% |
| !! | GATTTGCTGTTGTTGGGGAA+GGG | + | chr1_3:51710041-51710060 | None:intergenic | 45.0% |
| !! | TGGAGGGATTTGCTGTTGTT+GGG | + | chr1_3:51710047-51710066 | None:intergenic | 45.0% |
| !!! | AAGGTGGGTTTTGTTGTGGA+GGG | + | chr1_3:51710063-51710082 | None:intergenic | 45.0% |
| !!! | AAAGGTGGGTTTTGTTGTGG+AGG | + | chr1_3:51710064-51710083 | None:intergenic | 45.0% |
| !!! | GGAAAAGGTGGGTTTTGTTG+TGG | + | chr1_3:51710067-51710086 | None:intergenic | 45.0% |
| !! | GGGATTTGTTGTTGGGGAAA+AGG | + | chr1_3:51710082-51710101 | None:intergenic | 45.0% |
| !! | TGTGGAGGGATTTGTTGTTG+GGG | + | chr1_3:51710088-51710107 | None:intergenic | 45.0% |
| !! | GTTGTGGAGGGATTTGTTGT+TGG | + | chr1_3:51710090-51710109 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr1_3:51710127-51710146 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr1_3:51710129-51710148 | None:intergenic | 45.0% |
| !!! | GGTGGGTTTTGTTGTTGTTG+GGG | + | chr1_3:51710127-51710146 | None:intergenic | 45.0% |
| !!! | GTGGTGGGTTTTGTTGTTGT+TGG | + | chr1_3:51710129-51710148 | None:intergenic | 45.0% |
| ! | ACATTTTCTTGTTGGGGCTG+TGG | + | chr1_3:51710175-51710194 | None:intergenic | 45.0% |
| ACAGCCCCAACAAGAAAATG+TGG | - | chr1_3:51710174-51710193 | Msa0124150:intron | 45.0% | |
| !! | CTCGTCGTCGATTCATCTTA+AGG | - | chr1_3:51710260-51710279 | Msa0124150:CDS | 45.0% |
| CGATTCATCTTAAGGCCTAG+TGG | - | chr1_3:51710268-51710287 | Msa0124150:CDS | 45.0% | |
| ! | CAGCTTTTTGCCTAGCAAAC+CGG | - | chr1_3:51710369-51710388 | Msa0124150:CDS | 45.0% |
| TACTTAGAAGAGCCCGTATG+CGG | - | chr1_3:51710671-51710690 | Msa0124150:CDS | 45.0% | |
| TTGTCTCCTCAAACCGCATA+CGG | + | chr1_3:51710687-51710706 | None:intergenic | 45.0% | |
| GGTTTGAGGAGACAAGAAAG+CGG | - | chr1_3:51710692-51710711 | Msa0124150:CDS | 45.0% | |
| CCCGCCTATCTTTGATGAAT+TGG | - | chr1_3:51710729-51710748 | Msa0124150:CDS | 45.0% | |
| CCGGTTCTTCTTTGCTTTGT+CGG | + | chr1_3:51710791-51710810 | None:intergenic | 45.0% | |
| !! | ATAAAATAAAAATTATGATA+TGG | + | chr1_3:51710514-51710533 | None:intergenic | 5.0% |
| !! | ATAAAATAAAAATTATGATA+TGG | + | chr1_3:51710514-51710533 | None:intergenic | 5.0% |
| ATCTGCTGCATCTTCTAGCC+AGG | - | chr1_3:51709838-51709857 | Msa0124150:CDS | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | - | chr1_3:51709839-51709858 | Msa0124150:CDS | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | + | chr1_3:51709923-51709942 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | + | chr1_3:51709924-51709943 | None:intergenic | 50.0% |
| GGAAGGAATGTCCCATAAGG+AGG | + | chr1_3:51709971-51709990 | None:intergenic | 50.0% | |
| GGAGGAAGGAATGTCCCATA+AGG | + | chr1_3:51709974-51709993 | None:intergenic | 50.0% | |
| GGTGGTAAATGATAGCTCGG+AGG | + | chr1_3:51709992-51710011 | None:intergenic | 50.0% | |
| ! | TGTGGTGGGACTGAATATGG+TGG | + | chr1_3:51710010-51710029 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | + | chr1_3:51710024-51710043 | None:intergenic | 50.0% |
| !! | GGATTTGCTGTTGTTGGGGA+AGG | + | chr1_3:51710042-51710061 | None:intergenic | 50.0% |
| !! | GGAGGGATTTGCTGTTGTTG+GGG | + | chr1_3:51710046-51710065 | None:intergenic | 50.0% |
| !! | GTGGAGGGATTTGCTGTTGT+TGG | + | chr1_3:51710048-51710067 | None:intergenic | 50.0% |
| !!! | CAGGTGGGTTTTGTTGTGGA+GGG | + | chr1_3:51710102-51710121 | None:intergenic | 50.0% |
| !!! | ACAGGTGGGTTTTGTTGTGG+AGG | + | chr1_3:51710103-51710122 | None:intergenic | 50.0% |
| !!! | GGAACAGGTGGGTTTTGTTG+TGG | + | chr1_3:51710106-51710125 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAACAGGT+GGG | + | chr1_3:51710117-51710136 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAACAGG+TGG | + | chr1_3:51710118-51710137 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | + | chr1_3:51710144-51710163 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | + | chr1_3:51710145-51710164 | None:intergenic | 50.0% |
| TTTCTTGTTGGGGCTGTGGT+GGG | + | chr1_3:51710171-51710190 | None:intergenic | 50.0% | |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | + | chr1_3:51710172-51710191 | None:intergenic | 50.0% |
| GAAAATGTGGTCGAAGAGGG+TGG | - | chr1_3:51710187-51710206 | Msa0124150:intron | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | + | chr1_3:51710391-51710410 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | + | chr1_3:51710593-51710612 | None:intergenic | 50.0% | |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | - | chr1_3:51710645-51710664 | Msa0124150:CDS | 50.0% |
| TGTCTCCTCAAACCGCATAC+GGG | + | chr1_3:51710686-51710705 | None:intergenic | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | - | chr1_3:51710701-51710720 | Msa0124150:CDS | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | - | chr1_3:51710706-51710725 | Msa0124150:CDS | 50.0% | |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | - | chr1_3:51710750-51710769 | Msa0124150:CDS | 50.0% |
| ATCTGCTGCATCTTCTAGCC+AGG | - | chr1_3:51709838-51709857 | Msa0124150:CDS | 50.0% | |
| TCTGCTGCATCTTCTAGCCA+GGG | - | chr1_3:51709839-51709858 | Msa0124150:CDS | 50.0% | |
| ! | ACTGGAGGGCACATGTAAGT+GGG | + | chr1_3:51709923-51709942 | None:intergenic | 50.0% |
| ! | TACTGGAGGGCACATGTAAG+TGG | + | chr1_3:51709924-51709943 | None:intergenic | 50.0% |
| GGAAGGAATGTCCCATAAGG+AGG | + | chr1_3:51709971-51709990 | None:intergenic | 50.0% | |
| GGAGGAAGGAATGTCCCATA+AGG | + | chr1_3:51709974-51709993 | None:intergenic | 50.0% | |
| GGTGGTAAATGATAGCTCGG+AGG | + | chr1_3:51709992-51710011 | None:intergenic | 50.0% | |
| ! | TGTGGTGGGACTGAATATGG+TGG | + | chr1_3:51710010-51710029 | None:intergenic | 50.0% |
| !! | GAAGGGGAAGGTTTTGTGGT+GGG | + | chr1_3:51710024-51710043 | None:intergenic | 50.0% |
| !! | GGATTTGCTGTTGTTGGGGA+AGG | + | chr1_3:51710042-51710061 | None:intergenic | 50.0% |
| !! | GGAGGGATTTGCTGTTGTTG+GGG | + | chr1_3:51710046-51710065 | None:intergenic | 50.0% |
| !! | GTGGAGGGATTTGCTGTTGT+TGG | + | chr1_3:51710048-51710067 | None:intergenic | 50.0% |
| !!! | CAGGTGGGTTTTGTTGTGGA+GGG | + | chr1_3:51710102-51710121 | None:intergenic | 50.0% |
| !!! | ACAGGTGGGTTTTGTTGTGG+AGG | + | chr1_3:51710103-51710122 | None:intergenic | 50.0% |
| !!! | GGAACAGGTGGGTTTTGTTG+TGG | + | chr1_3:51710106-51710125 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGAACAGGT+GGG | + | chr1_3:51710117-51710136 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGAACAGG+TGG | + | chr1_3:51710118-51710137 | None:intergenic | 50.0% |
| ! | GTTGTTGTTGGGGTTGTGGT+GGG | + | chr1_3:51710144-51710163 | None:intergenic | 50.0% |
| ! | TGTTGTTGTTGGGGTTGTGG+TGG | + | chr1_3:51710145-51710164 | None:intergenic | 50.0% |
| TTTCTTGTTGGGGCTGTGGT+GGG | + | chr1_3:51710171-51710190 | None:intergenic | 50.0% | |
| ! | TTTTCTTGTTGGGGCTGTGG+TGG | + | chr1_3:51710172-51710191 | None:intergenic | 50.0% |
| GAAAATGTGGTCGAAGAGGG+TGG | - | chr1_3:51710187-51710206 | Msa0124150:intron | 50.0% | |
| GATCTGATTGCTTCAGCAGC+CGG | + | chr1_3:51710391-51710410 | None:intergenic | 50.0% | |
| CACAGCTTCCCAAGAACACT+TGG | + | chr1_3:51710593-51710612 | None:intergenic | 50.0% | |
| ! | CAGAGCTGCTGCACGTTTTT+CGG | - | chr1_3:51710645-51710664 | Msa0124150:CDS | 50.0% |
| TGTCTCCTCAAACCGCATAC+GGG | + | chr1_3:51710686-51710705 | None:intergenic | 50.0% | |
| AGACAAGAAAGCGGCCACAT+TGG | - | chr1_3:51710701-51710720 | Msa0124150:CDS | 50.0% | |
| AGAAAGCGGCCACATTGGAT+TGG | - | chr1_3:51710706-51710725 | Msa0124150:CDS | 50.0% | |
| !! | GGTTAAGTATTGGGCGTCTG+AGG | - | chr1_3:51710750-51710769 | Msa0124150:CDS | 50.0% |
| GAAAGAGCAAGGGCAACAGC+AGG | - | chr1_3:51709732-51709751 | Msa0124150:CDS | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | - | chr1_3:51709848-51709867 | Msa0124150:CDS | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | - | chr1_3:51709849-51709868 | Msa0124150:CDS | 55.0% | |
| ! | TGGAGCAGCTACACTAGCCT+GGG | + | chr1_3:51709879-51709898 | None:intergenic | 55.0% |
| GGGCACATGTAAGTGGGATG+AGG | + | chr1_3:51709917-51709936 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | - | chr1_3:51709929-51709948 | Msa0124150:intron | 55.0% | |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | + | chr1_3:51710025-51710044 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | + | chr1_3:51710028-51710047 | None:intergenic | 55.0% |
| AATGTGGTCGAAGAGGGTGG+TGG | - | chr1_3:51710190-51710209 | Msa0124150:intron | 55.0% | |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | - | chr1_3:51710477-51710496 | Msa0124150:CDS | 55.0% |
| AAGAGCCCGTATGCGGTTTG+AGG | - | chr1_3:51710678-51710697 | Msa0124150:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | + | chr1_3:51710718-51710737 | None:intergenic | 55.0% | |
| GAAAGAGCAAGGGCAACAGC+AGG | - | chr1_3:51709732-51709751 | Msa0124150:CDS | 55.0% | |
| TCTTCTAGCCAGGGATCACC+TGG | - | chr1_3:51709848-51709867 | Msa0124150:CDS | 55.0% | |
| CTTCTAGCCAGGGATCACCT+GGG | - | chr1_3:51709849-51709868 | Msa0124150:CDS | 55.0% | |
| ! | TGGAGCAGCTACACTAGCCT+GGG | + | chr1_3:51709879-51709898 | None:intergenic | 55.0% |
| GGGCACATGTAAGTGGGATG+AGG | + | chr1_3:51709917-51709936 | None:intergenic | 55.0% | |
| ATGTGCCCTCCAGTACATCC+TGG | - | chr1_3:51709929-51709948 | Msa0124150:intron | 55.0% | |
| !! | GGAAGGGGAAGGTTTTGTGG+TGG | + | chr1_3:51710025-51710044 | None:intergenic | 55.0% |
| ! | TGGGGAAGGGGAAGGTTTTG+TGG | + | chr1_3:51710028-51710047 | None:intergenic | 55.0% |
| AATGTGGTCGAAGAGGGTGG+TGG | - | chr1_3:51710190-51710209 | Msa0124150:intron | 55.0% | |
| !! | GCGCTGGTTTAGGCTCTTTC+AGG | - | chr1_3:51710477-51710496 | Msa0124150:CDS | 55.0% |
| AAGAGCCCGTATGCGGTTTG+AGG | - | chr1_3:51710678-51710697 | Msa0124150:CDS | 55.0% | |
| ATAGGCGGGCCAATCCAATG+TGG | + | chr1_3:51710718-51710737 | None:intergenic | 55.0% | |
| GCAAGGGCAACAGCAGGAAG+CGG | - | chr1_3:51709738-51709757 | Msa0124150:CDS | 60.0% | |
| ! | CTTAGTGGACGCAGCGACAG+AGG | - | chr1_3:51709772-51709791 | Msa0124150:CDS | 60.0% |
| ! | AGCAGCTACACTAGCCTGGG+AGG | + | chr1_3:51709876-51709895 | None:intergenic | 60.0% |
| CTGGAGCAGCTACACTAGCC+TGG | + | chr1_3:51709880-51709899 | None:intergenic | 60.0% | |
| TGAGGAGCAGAAGTCGTCGC+TGG | + | chr1_3:51709899-51709918 | None:intergenic | 60.0% | |
| GCTGTTGTTGGGGAAGGGGA+AGG | + | chr1_3:51710036-51710055 | None:intergenic | 60.0% | |
| !! | GCTTCAGCAGCCGGTTTGCT+AGG | + | chr1_3:51710382-51710401 | None:intergenic | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | - | chr1_3:51710759-51710778 | Msa0124150:CDS | 60.0% |
| GCAAGGGCAACAGCAGGAAG+CGG | - | chr1_3:51709738-51709757 | Msa0124150:CDS | 60.0% | |
| ! | CTTAGTGGACGCAGCGACAG+AGG | - | chr1_3:51709772-51709791 | Msa0124150:CDS | 60.0% |
| ! | AGCAGCTACACTAGCCTGGG+AGG | + | chr1_3:51709876-51709895 | None:intergenic | 60.0% |
| CTGGAGCAGCTACACTAGCC+TGG | + | chr1_3:51709880-51709899 | None:intergenic | 60.0% | |
| TGAGGAGCAGAAGTCGTCGC+TGG | + | chr1_3:51709899-51709918 | None:intergenic | 60.0% | |
| GCTGTTGTTGGGGAAGGGGA+AGG | + | chr1_3:51710036-51710055 | None:intergenic | 60.0% | |
| !! | GCTTCAGCAGCCGGTTTGCT+AGG | + | chr1_3:51710382-51710401 | None:intergenic | 60.0% |
| ! | TTGGGCGTCTGAGGCGTTCA+AGG | - | chr1_3:51710759-51710778 | Msa0124150:CDS | 60.0% |
| ! | ACACTAGCCTGGGAGGACCC+AGG | + | chr1_3:51709869-51709888 | None:intergenic | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | - | chr1_3:51710198-51710217 | Msa0124150:intron | 65.0% |
| ! | ACACTAGCCTGGGAGGACCC+AGG | + | chr1_3:51709869-51709888 | None:intergenic | 65.0% |
| !! | CGAAGAGGGTGGTGGAGAGC+TGG | - | chr1_3:51710198-51710217 | Msa0124150:intron | 65.0% |
| GGGAGGACCCAGGTGATCCC+TGG | + | chr1_3:51709859-51709878 | None:intergenic | 70.0% | |
| GGGATCACCTGGGTCCTCCC+AGG | - | chr1_3:51709859-51709878 | Msa0124150:CDS | 70.0% | |
| GGGAGGACCCAGGTGATCCC+TGG | + | chr1_3:51709859-51709878 | None:intergenic | 70.0% | |
| GGGATCACCTGGGTCCTCCC+AGG | - | chr1_3:51709859-51709878 | Msa0124150:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 51709713 | 51710810 | 51709713 | ID=Msa0124150;Name=Msa0124150 |
| chr1_3 | mRNA | 51709713 | 51710810 | 51709713 | ID=Msa0124150-mRNA-1;Parent=Msa0124150;Name=Msa0124150-mRNA-1;_AED=0.08;_eAED=0.09;_QI=0|1|0.33|1|1|1|3|0|311 |
| chr1_3 | exon | 51710227 | 51710810 | 51710227 | ID=Msa0124150-mRNA-1:exon:15814;Parent=Msa0124150-mRNA-1 |
| chr1_3 | exon | 51710025 | 51710151 | 51710025 | ID=Msa0124150-mRNA-1:exon:15813;Parent=Msa0124150-mRNA-1 |
| chr1_3 | exon | 51709713 | 51709934 | 51709713 | ID=Msa0124150-mRNA-1:exon:15812;Parent=Msa0124150-mRNA-1 |
| chr1_3 | CDS | 51710227 | 51710810 | 51710227 | ID=Msa0124150-mRNA-1:cds;Parent=Msa0124150-mRNA-1 |
| chr1_3 | CDS | 51710025 | 51710151 | 51710025 | ID=Msa0124150-mRNA-1:cds;Parent=Msa0124150-mRNA-1 |
| chr1_3 | CDS | 51709713 | 51709934 | 51709713 | ID=Msa0124150-mRNA-1:cds;Parent=Msa0124150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
