Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891710 | XP_013443358.1 | 96.528 | 144 | 5 | 0 | 1 | 144 | 1 | 144 | 2.42e-93 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891710 | sp|Q9FJ98|RPD6A_ARATH | 78.621 | 145 | 29 | 2 | 1 | 144 | 1 | 144 | 5.11e-71 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891710 | A0A072TKL5 | 96.528 | 144 | 5 | 0 | 1 | 144 | 1 | 144 | 1.16e-93 | 276 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034410 | Msa0891710 | 0.800222 | 1.594546e-48 | -8.615850e-47 |
| Msa0049370 | Msa0891710 | 0.809623 | 1.727004e-50 | -8.615850e-47 |
| Msa0649050 | Msa0891710 | 0.810134 | 1.340388e-50 | -8.615850e-47 |
| Msa0709400 | Msa0891710 | 0.803109 | 4.077738e-49 | -8.615850e-47 |
| Msa0229230 | Msa0891710 | 0.829386 | 5.300137e-55 | -8.615850e-47 |
| Msa0418270 | Msa0891710 | 0.810680 | 1.021838e-50 | -8.615850e-47 |
| Msa0472620 | Msa0891710 | 0.803363 | 3.613056e-49 | -8.615850e-47 |
| Msa0250820 | Msa0891710 | 0.815985 | 6.981946e-52 | -8.615850e-47 |
| Msa0258390 | Msa0891710 | 0.807495 | 4.916116e-50 | -8.615850e-47 |
| Msa0334550 | Msa0891710 | 0.810902 | 9.149427e-51 | -8.615850e-47 |
| Msa0335730 | Msa0891710 | 0.839991 | 1.137941e-57 | -8.615850e-47 |
| Msa0588360 | Msa0891710 | 0.806437 | 8.231302e-50 | -8.615850e-47 |
| Msa0891710 | Msa0902760 | 0.800034 | 1.741411e-48 | -8.615850e-47 |
| Msa0891710 | Msa0979730 | 0.801406 | 9.142732e-49 | -8.615850e-47 |
| Msa0891710 | Msa1013400 | 0.800040 | 1.736273e-48 | -8.615850e-47 |
| Msa0891710 | Msa1093530 | 0.801341 | 9.424675e-49 | -8.615850e-47 |
| Msa0891710 | Msa1105460 | 0.816359 | 5.761013e-52 | -8.615850e-47 |
| Msa0891710 | Msa1148910 | 0.843153 | 1.669272e-58 | -8.615850e-47 |
| Msa0891710 | Msa1170670 | 0.809457 | 1.874727e-50 | -8.615850e-47 |
| Msa0891710 | Msa1206460 | 0.803382 | 3.580581e-49 | -8.615850e-47 |
| Msa0891710 | Msa1382620 | 0.806737 | 7.112704e-50 | -8.615850e-47 |
| Msa0891710 | Msa1390440 | 0.814429 | 1.547702e-51 | -8.615850e-47 |
| Msa0891710 | Msa1405930 | 0.811161 | 8.040502e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891710 | MtrunA17_Chr6g0472581 | 96.528 | 144 | 5 | 0 | 1 | 144 | 1 | 144 | 2.23e-97 | 276 |
| Msa0891710 | MtrunA17_Chr7g0258091 | 83.448 | 145 | 23 | 1 | 1 | 144 | 1 | 145 | 2.86e-72 | 213 |
| Msa0891710 | MtrunA17_Chr6g0471881 | 95.349 | 43 | 2 | 0 | 102 | 144 | 1 | 43 | 1.05e-24 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0891710 | AT5G51940.1 | 78.621 | 145 | 29 | 2 | 1 | 144 | 1 | 144 | 5.19e-72 | 213 |
| Msa0891710 | AT2G04630.1 | 78.621 | 145 | 29 | 2 | 1 | 144 | 1 | 144 | 3.99e-71 | 210 |
Find 54 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATGAGCGTGCACGAATTT+TGG | 0.183349 | 6_1:+67763084 | Msa0891710:CDS |
| TGTGTAAGGGTTTAAGAGTT+TGG | 0.301690 | 6_1:+67761654 | None:intergenic |
| TTTCTCTCGAAGCTCTTTCA+TGG | 0.342410 | 6_1:-67764287 | None:intergenic |
| GACTCATGGAAGAGGCAAAT+TGG | 0.371145 | 6_1:+67764509 | Msa0891710:CDS |
| GCCTATTGAAACCGAGGAAA+AGG | 0.427074 | 6_1:+67763009 | Msa0891710:CDS |
| GAATTCCTTACTTCAATCTC+AGG | 0.430246 | 6_1:-67762850 | None:intergenic |
| AATTGTGCAGCTATGAAGAT+TGG | 0.435283 | 6_1:+67764462 | Msa0891710:intron |
| ATTGTGCAGCTATGAAGATT+GGG | 0.436731 | 6_1:+67764463 | Msa0891710:intron |
| GTCTTTCGAGGCCTTTCTGT+TGG | 0.438965 | 6_1:-67763043 | None:intergenic |
| AATTCGTGCACGCTCATACT+TGG | 0.443078 | 6_1:-67763080 | None:intergenic |
| GTACCCGTGCTCTTCAAATC+AGG | 0.451117 | 6_1:+67763107 | Msa0891710:CDS |
| GGCAAATTGGTGGTGATTGA+TGG | 0.457288 | 6_1:+67764522 | Msa0891710:CDS |
| CATAACCTCTTATTATGCCT+TGG | 0.463278 | 6_1:+67764673 | Msa0891710:three_prime_UTR |
| GCAGAACGAGCTTCAGCGTA+AGG | 0.464124 | 6_1:+67761687 | Msa0891710:five_prime_UTR |
| ATATATTTCGATGTCTTTCG+AGG | 0.473400 | 6_1:-67763055 | None:intergenic |
| ACTTCAATCTCAGGATCTAC+TGG | 0.475450 | 6_1:-67762841 | None:intergenic |
| CACAGTAATTACCTTCCATC+AGG | 0.487928 | 6_1:-67764340 | None:intergenic |
| AAGTACCAAGGCATAATAAG+AGG | 0.489624 | 6_1:-67764678 | None:intergenic |
| CAAGTAACGACGGATGGTAA+AGG | 0.490956 | 6_1:-67764317 | None:intergenic |
| CCTTCCAACTCAACCATGAC+AGG | 0.504355 | 6_1:-67763242 | None:intergenic |
| GGGAGTTGATGAATTGATTG+TGG | 0.509393 | 6_1:+67764484 | Msa0891710:CDS |
| AAGTAACGACGGATGGTAAA+GGG | 0.509534 | 6_1:-67764316 | None:intergenic |
| GAGTATAATGACTTGGACAT+CGG | 0.525763 | 6_1:+67761735 | Msa0891710:CDS |
| AGTATAATGACTTGGACATC+GGG | 0.533677 | 6_1:+67761736 | Msa0891710:CDS |
| ATTACCTGATTTGAAGAGCA+CGG | 0.540995 | 6_1:-67763111 | None:intergenic |
| CTGTCATGGTTGAGTTGGAA+GGG | 0.541235 | 6_1:+67763243 | Msa0891710:CDS |
| ATCCGTCGTTACTTGCCTGA+TGG | 0.543002 | 6_1:+67764325 | Msa0891710:CDS |
| TGCACCTGTCATGGTTGAGT+TGG | 0.544974 | 6_1:+67763238 | Msa0891710:CDS |
| TTACCTGATTTGAAGAGCAC+GGG | 0.554617 | 6_1:-67763110 | None:intergenic |
| AATTGATTGTGGAAGACTCA+TGG | 0.564886 | 6_1:+67764495 | Msa0891710:CDS |
| GACAACAATGATGAGATGGC+TGG | 0.565670 | 6_1:+67762983 | Msa0891710:CDS |
| AAAGTTTCTCGTACCTCAAG+CGG | 0.565990 | 6_1:-67763275 | None:intergenic |
| AACAAGAAGAGCCAACAGAA+AGG | 0.566880 | 6_1:+67763032 | Msa0891710:CDS |
| CGACGACGAGTATAATGACT+TGG | 0.578934 | 6_1:+67761728 | Msa0891710:CDS |
| GTCGTTACTTGCCTGATGGA+AGG | 0.583890 | 6_1:+67764329 | Msa0891710:CDS |
| TTGTGGAAGACTCATGGAAG+AGG | 0.587346 | 6_1:+67764501 | Msa0891710:CDS |
| TTGTAGTGTGGTACTAATGT+TGG | 0.589851 | 6_1:+67764604 | Msa0891710:three_prime_UTR |
| CCTGTCATGGTTGAGTTGGA+AGG | 0.591673 | 6_1:+67763242 | Msa0891710:CDS |
| AAGTTTCTCGTACCTCAAGC+GGG | 0.593900 | 6_1:-67763274 | None:intergenic |
| CAGAACGAGCTTCAGCGTAA+GGG | 0.597639 | 6_1:+67761688 | Msa0891710:five_prime_UTR |
| ATCAGGCAAGTAACGACGGA+TGG | 0.598660 | 6_1:-67764323 | None:intergenic |
| AGGGGAGACTGACCCGCTTG+AGG | 0.598671 | 6_1:+67763262 | Msa0891710:CDS |
| AAGTATGAATGCACCTGTCA+TGG | 0.600527 | 6_1:+67763229 | Msa0891710:intron |
| TTGATAGGAAGGTGCAGAGG+TGG | 0.602482 | 6_1:+67762946 | Msa0891710:intron |
| TGTCATGGTTGAGTTGGAAG+GGG | 0.604272 | 6_1:+67763244 | Msa0891710:CDS |
| TCATGGAAGAGGCAAATTGG+TGG | 0.616416 | 6_1:+67764512 | Msa0891710:CDS |
| CAACGACAACAATGATGAGA+TGG | 0.626792 | 6_1:+67762979 | Msa0891710:CDS |
| CATAAACTTGACTTGTAGTG+TGG | 0.639236 | 6_1:+67764592 | Msa0891710:three_prime_UTR |
| TGGAGAGCCTATTGAAACCG+AGG | 0.643087 | 6_1:+67763003 | Msa0891710:CDS |
| TTCCATCAGGCAAGTAACGA+CGG | 0.645675 | 6_1:-67764327 | None:intergenic |
| TTGTGCAGCTATGAAGATTG+GGG | 0.646097 | 6_1:+67764464 | Msa0891710:intron |
| TGGTTGATAGGAAGGTGCAG+AGG | 0.655672 | 6_1:+67762943 | Msa0891710:intron |
| CAAGTCATTATACTCGTCGT+CGG | 0.670073 | 6_1:-67761727 | None:intergenic |
| GTAAGGGTTTCTCATCACAA+TGG | 0.725059 | 6_1:+67761704 | Msa0891710:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAATGAAAATTAAATT+GGG | - | chr6_1:67761825-67761844 | None:intergenic | 10.0% |
| !! | TTCAAAAATGAAAATTAAAT+TGG | - | chr6_1:67761826-67761845 | None:intergenic | 10.0% |
| !! | TAATTTAAAAAATTCATCAA+CGG | - | chr6_1:67762922-67762941 | None:intergenic | 10.0% |
| !!! | TGATGAATTTTTTAAATTAT+TGG | + | chr6_1:67762923-67762942 | Msa0891710:intron | 10.0% |
| !! | ATTATTGTAATATGAAAATA+TGG | - | chr6_1:67763715-67763734 | None:intergenic | 10.0% |
| !! | AAAACAATTAATAATCAATT+TGG | - | chr6_1:67764153-67764172 | None:intergenic | 10.0% |
| !! | CAAAAATGAAAATTAAATTG+GGG | - | chr6_1:67761824-67761843 | None:intergenic | 15.0% |
| !! | GGAATTAATTATTATCAATA+AGG | - | chr6_1:67761852-67761871 | None:intergenic | 15.0% |
| !! | AAAAATAATAAAACGATATC+AGG | - | chr6_1:67761873-67761892 | None:intergenic | 15.0% |
| !! | ACAAACATATATGAATATTA+AGG | + | chr6_1:67762890-67762909 | Msa0891710:intron | 15.0% |
| !!! | TTTTTAAATTATTGGTTGAT+AGG | + | chr6_1:67762931-67762950 | Msa0891710:intron | 15.0% |
| !!! | TTTTATTTTGAAATATGGAT+CGG | - | chr6_1:67763632-67763651 | None:intergenic | 15.0% |
| !!! | AATAATAACAGCTTTTAATA+TGG | + | chr6_1:67763729-67763748 | Msa0891710:intron | 15.0% |
| !!! | ATAATAACAGCTTTTAATAT+GGG | + | chr6_1:67763730-67763749 | Msa0891710:intron | 15.0% |
| !! | TTTACAATCTTATTATTCAA+AGG | - | chr6_1:67764095-67764114 | None:intergenic | 15.0% |
| !! | ACAAAACATAAAAATGAACA+TGG | - | chr6_1:67761927-67761946 | None:intergenic | 20.0% |
| !! | TATAGGAAGAAAAAACAAAA+AGG | - | chr6_1:67761975-67761994 | None:intergenic | 20.0% |
| !! | GCTTAAAAACATGAATATAT+AGG | - | chr6_1:67761992-67762011 | None:intergenic | 20.0% |
| !! | ATAAGCATTTATCATGATAA+AGG | + | chr6_1:67762362-67762381 | Msa0891710:intron | 20.0% |
| !!! | TAAACTGTATGATCTTTTTT+AGG | - | chr6_1:67762698-67762717 | None:intergenic | 20.0% |
| !! | AAAAGATCATACAGTTTAAA+AGG | + | chr6_1:67762700-67762719 | Msa0891710:intron | 20.0% |
| !! | ATCATGTTTAAACATTTACA+AGG | - | chr6_1:67763189-67763208 | None:intergenic | 20.0% |
| !! | AACAAAAGAAATTAGATACT+AGG | - | chr6_1:67763399-67763418 | None:intergenic | 20.0% |
| !!! | TTTATTTTGAAATATGGATC+GGG | - | chr6_1:67763631-67763650 | None:intergenic | 20.0% |
| !! | ATATGAAAATATGGAAAGAA+GGG | - | chr6_1:67763706-67763725 | None:intergenic | 20.0% |
| !! | AATATGAAAATATGGAAAGA+AGG | - | chr6_1:67763707-67763726 | None:intergenic | 20.0% |
| !!! | TAAATATGTTTTGAAGTCAA+TGG | - | chr6_1:67764040-67764059 | None:intergenic | 20.0% |
| !!! | ATCAATTTGGAATTGATATA+TGG | - | chr6_1:67764140-67764159 | None:intergenic | 20.0% |
| !! | TCCAAAACTAAACAAAAAAA+GGG | - | chr6_1:67764373-67764392 | None:intergenic | 20.0% |
| !! | TTCCAAAACTAAACAAAAAA+AGG | - | chr6_1:67764374-67764393 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTAGTTTTGGAAA+TGG | + | chr6_1:67764375-67764394 | Msa0891710:intron | 20.0% |
| !!! | TTTTGTTTAGTTTTGGAAAT+GGG | + | chr6_1:67764376-67764395 | Msa0891710:intron | 20.0% |
| !! | AAAAAGGTTACATTTTGCTT+TGG | - | chr6_1:67761959-67761978 | None:intergenic | 25.0% |
| !!! | TTTAAGCTTGTTTTGCATTA+TGG | + | chr6_1:67762005-67762024 | Msa0891710:intron | 25.0% |
| !!! | TTAAGCTTGTTTTGCATTAT+GGG | + | chr6_1:67762006-67762025 | Msa0891710:intron | 25.0% |
| !! | GCTTATTTGAGTTTATCTAA+TGG | + | chr6_1:67762042-67762061 | Msa0891710:intron | 25.0% |
| ! | TTGAATGTAATAACATGTGT+CGG | + | chr6_1:67762575-67762594 | Msa0891710:intron | 25.0% |
| !! | GGAAAAATTTGTTCTTTCAA+AGG | - | chr6_1:67762677-67762696 | None:intergenic | 25.0% |
| ! | ATCATACAGTTTAAAAGGAA+TGG | + | chr6_1:67762705-67762724 | Msa0891710:intron | 25.0% |
| ! | AAAACACATATCTCATTAAC+TGG | - | chr6_1:67762753-67762772 | None:intergenic | 25.0% |
| !! | GTTTTGTAGTATATTACTAG+TGG | + | chr6_1:67762768-67762787 | Msa0891710:intron | 25.0% |
| ! | TCTCTCATAACAAATTTGAA+TGG | + | chr6_1:67762797-67762816 | Msa0891710:intron | 25.0% |
| ! | TCATATATGTTTGTGTTAGT+CGG | - | chr6_1:67762884-67762903 | None:intergenic | 25.0% |
| !!! | TAAATTATTGGTTGATAGGA+AGG | + | chr6_1:67762935-67762954 | Msa0891710:intron | 25.0% |
| ! | AATTTCAAAACATATCTCGT+CGG | + | chr6_1:67763445-67763464 | Msa0891710:intron | 25.0% |
| ! | TACAAATTATACGCAAGAAT+AGG | - | chr6_1:67763812-67763831 | None:intergenic | 25.0% |
| ! | AAACTTAAACATTCACTTTG+TGG | + | chr6_1:67763923-67763942 | Msa0891710:intron | 25.0% |
| ! | AAGATTGTAAATATCTCCTT+TGG | + | chr6_1:67764104-67764123 | Msa0891710:intron | 25.0% |
| ! | TTGGAATTGATATATGGTAT+TGG | - | chr6_1:67764134-67764153 | None:intergenic | 25.0% |
| !!! | TTCAAATTCATTAGTTTGCA+TGG | + | chr6_1:67764180-67764199 | Msa0891710:intron | 25.0% |
| !!! | TCAAATTCATTAGTTTGCAT+GGG | + | chr6_1:67764181-67764200 | Msa0891710:intron | 25.0% |
| !!! | TCCCTTTTTTTGTTTAGTTT+TGG | + | chr6_1:67764369-67764388 | Msa0891710:intron | 25.0% |
| ! | TATCCAAAAATTAAGTACCA+AGG | - | chr6_1:67764693-67764712 | None:intergenic | 25.0% |
| CATTATGGGTATGTTTGAAT+TGG | + | chr6_1:67762020-67762039 | Msa0891710:intron | 30.0% | |
| TTGAACATAATCACATGTGT+CGG | + | chr6_1:67762133-67762152 | Msa0891710:intron | 30.0% | |
| !!! | TTTTTTTTTGTACGTTCTCC+AGG | + | chr6_1:67762266-67762285 | Msa0891710:intron | 30.0% |
| TTAAACTGTTTAGCCAAACA+TGG | + | chr6_1:67762405-67762424 | Msa0891710:intron | 30.0% | |
| ATACAGTTTAAAAGGAATGG+AGG | + | chr6_1:67762708-67762727 | Msa0891710:intron | 30.0% | |
| TACAGTTTAAAAGGAATGGA+GGG | + | chr6_1:67762709-67762728 | Msa0891710:intron | 30.0% | |
| ATATATTTCGATGTCTTTCG+AGG | - | chr6_1:67763058-67763077 | None:intergenic | 30.0% | |
| ! | GTGAAGTTAAGATTTTGTTC+TGG | + | chr6_1:67763154-67763173 | Msa0891710:intron | 30.0% |
| ! | AAACATGATGTCTTGTCTTT+TGG | + | chr6_1:67763200-67763219 | Msa0891710:intron | 30.0% |
| AGATACTAGGATAACAAGTT+AGG | - | chr6_1:67763386-67763405 | None:intergenic | 30.0% | |
| CAAAGTGAATGATCAAAGTT+AGG | - | chr6_1:67763524-67763543 | None:intergenic | 30.0% | |
| CTAACTTTGATCATTCACTT+TGG | + | chr6_1:67763522-67763541 | Msa0891710:intron | 30.0% | |
| ! | TAACAGCTTTTAATATGGGA+AGG | + | chr6_1:67763734-67763753 | Msa0891710:intron | 30.0% |
| ! | CTGGAACATTTTCATTTACA+GGG | - | chr6_1:67763890-67763909 | None:intergenic | 30.0% |
| TAATGTTGATCGAAAAGAAC+TGG | + | chr6_1:67763994-67764013 | Msa0891710:intron | 30.0% | |
| ! | TTGTCACTGAATGTTGATTA+TGG | + | chr6_1:67764065-67764084 | Msa0891710:intron | 30.0% |
| TTGTAAATATCTCCTTTGGA+TGG | + | chr6_1:67764108-67764127 | Msa0891710:intron | 30.0% | |
| ! | CTTAACCGTTTGATACATTT+TGG | + | chr6_1:67764222-67764241 | Msa0891710:intron | 30.0% |
| TGTGTCCAAAATGTATCAAA+CGG | - | chr6_1:67764230-67764249 | None:intergenic | 30.0% | |
| ! | ATGCCTTGGTACTTAATTTT+TGG | + | chr6_1:67764687-67764706 | Msa0891710:three_prime_UTR | 30.0% |
| ! | GAGTATAATGACTTGGACAT+CGG | + | chr6_1:67761735-67761754 | Msa0891710:CDS | 35.0% |
| ! | AGTATAATGACTTGGACATC+GGG | + | chr6_1:67761736-67761755 | Msa0891710:CDS | 35.0% |
| ATTACCACACTCACCAAATT+AGG | + | chr6_1:67761792-67761811 | Msa0891710:intron | 35.0% | |
| TTACCACACTCACCAAATTA+GGG | + | chr6_1:67761793-67761812 | Msa0891710:intron | 35.0% | |
| ATTGGGGAAAAACCCTAATT+TGG | - | chr6_1:67761808-67761827 | None:intergenic | 35.0% | |
| TATTACCAGTGTAGATGTGT+CGG | - | chr6_1:67762094-67762113 | None:intergenic | 35.0% | |
| !!! | ACAGAGGTTCTAAGACTTTT+TGG | + | chr6_1:67762190-67762209 | Msa0891710:intron | 35.0% |
| ATATGGACTTAGACCATGTT+TGG | - | chr6_1:67762421-67762440 | None:intergenic | 35.0% | |
| TAAACTTAGCGCATGACATA+TGG | - | chr6_1:67762438-67762457 | None:intergenic | 35.0% | |
| TAGATCCTGAGATTGAAGTA+AGG | + | chr6_1:67762845-67762864 | Msa0891710:intron | 35.0% | |
| GAATTCCTTACTTCAATCTC+AGG | - | chr6_1:67762853-67762872 | None:intergenic | 35.0% | |
| ! | ATTACCTGATTTGAAGAGCA+CGG | - | chr6_1:67763114-67763133 | None:intergenic | 35.0% |
| ! | TGCATTTGAGTTATGTCTGA+AGG | + | chr6_1:67763340-67763359 | Msa0891710:intron | 35.0% |
| ! | GCATTTGAGTTATGTCTGAA+GGG | + | chr6_1:67763341-67763360 | Msa0891710:intron | 35.0% |
| ACTGCTAATGTGCTAATGTA+TGG | + | chr6_1:67763664-67763683 | Msa0891710:intron | 35.0% | |
| CTGCTAATGTGCTAATGTAT+GGG | + | chr6_1:67763665-67763684 | Msa0891710:intron | 35.0% | |
| ! | CCTGGAACATTTTCATTTAC+AGG | - | chr6_1:67763891-67763910 | None:intergenic | 35.0% |
| CCTGTAAATGAAAATGTTCC+AGG | + | chr6_1:67763888-67763907 | Msa0891710:intron | 35.0% | |
| AATGAAAATGTTCCAGGCTT+TGG | + | chr6_1:67763894-67763913 | Msa0891710:intron | 35.0% | |
| !! | AAGTTTTAATGTCCAAAGCC+TGG | - | chr6_1:67763909-67763928 | None:intergenic | 35.0% |
| TTGCAAAAACAGAAAACGCA+TGG | - | chr6_1:67764442-67764461 | None:intergenic | 35.0% | |
| AATTGTGCAGCTATGAAGAT+TGG | + | chr6_1:67764462-67764481 | Msa0891710:intron | 35.0% | |
| ATTGTGCAGCTATGAAGATT+GGG | + | chr6_1:67764463-67764482 | Msa0891710:intron | 35.0% | |
| AATTGATTGTGGAAGACTCA+TGG | + | chr6_1:67764495-67764514 | Msa0891710:CDS | 35.0% | |
| !! | CATAAACTTGACTTGTAGTG+TGG | + | chr6_1:67764592-67764611 | Msa0891710:three_prime_UTR | 35.0% |
| TTGTAGTGTGGTACTAATGT+TGG | + | chr6_1:67764604-67764623 | Msa0891710:three_prime_UTR | 35.0% | |
| CATAACCTCTTATTATGCCT+TGG | + | chr6_1:67764673-67764692 | Msa0891710:three_prime_UTR | 35.0% | |
| AAGTACCAAGGCATAATAAG+AGG | - | chr6_1:67764681-67764700 | None:intergenic | 35.0% | |
| GTAAGGGTTTCTCATCACAA+TGG | + | chr6_1:67761704-67761723 | Msa0891710:exon | 40.0% | |
| CAAGTCATTATACTCGTCGT+CGG | - | chr6_1:67761730-67761749 | None:intergenic | 40.0% | |
| ! | AAACCCTAATTTGGTGAGTG+TGG | - | chr6_1:67761799-67761818 | None:intergenic | 40.0% |
| ! | ATAATCACATGTGTCGGTGT+TGG | + | chr6_1:67762139-67762158 | Msa0891710:intron | 40.0% |
| !! | GCTATTTCTATAACCTGTCC+TGG | - | chr6_1:67762287-67762306 | None:intergenic | 40.0% |
| ACTTCAATCTCAGGATCTAC+TGG | - | chr6_1:67762844-67762863 | None:intergenic | 40.0% | |
| CAACGACAACAATGATGAGA+TGG | + | chr6_1:67762979-67762998 | Msa0891710:CDS | 40.0% | |
| ! | TCCTTTTCCTCGGTTTCAAT+AGG | - | chr6_1:67763013-67763032 | None:intergenic | 40.0% |
| ! | CTCTTCTTGTTCCTTTTCCT+CGG | - | chr6_1:67763023-67763042 | None:intergenic | 40.0% |
| AACAAGAAGAGCCAACAGAA+AGG | + | chr6_1:67763032-67763051 | Msa0891710:CDS | 40.0% | |
| ! | TATGAGCGTGCACGAATTTT+GGG | + | chr6_1:67763085-67763104 | Msa0891710:CDS | 40.0% |
| ! | TTACCTGATTTGAAGAGCAC+GGG | - | chr6_1:67763113-67763132 | None:intergenic | 40.0% |
| AAGTATGAATGCACCTGTCA+TGG | + | chr6_1:67763229-67763248 | Msa0891710:intron | 40.0% | |
| AAAGTTTCTCGTACCTCAAG+CGG | - | chr6_1:67763278-67763297 | None:intergenic | 40.0% | |
| ATAGACCAGTGGTATTCGTA+TGG | + | chr6_1:67763469-67763488 | Msa0891710:intron | 40.0% | |
| CAGTGGTATTCGTATGGAAT+GGG | + | chr6_1:67763475-67763494 | Msa0891710:intron | 40.0% | |
| AGTGGTATTCGTATGGAATG+GGG | + | chr6_1:67763476-67763495 | Msa0891710:intron | 40.0% | |
| ATGGGGGGAAGATTTCTTTA+AGG | + | chr6_1:67763493-67763512 | Msa0891710:intron | 40.0% | |
| ACTCCATTAACTAGGAAGGA+GGG | - | chr6_1:67763551-67763570 | None:intergenic | 40.0% | |
| AAGGACTCCATTAACTAGGA+AGG | - | chr6_1:67763555-67763574 | None:intergenic | 40.0% | |
| AGTCAAGGACTCCATTAACT+AGG | - | chr6_1:67763559-67763578 | None:intergenic | 40.0% | |
| ! | CATTTTCATTTACAGGGCCA+GGG | - | chr6_1:67763884-67763903 | None:intergenic | 40.0% |
| ! | ACATTTTCATTTACAGGGCC+AGG | - | chr6_1:67763885-67763904 | None:intergenic | 40.0% |
| !! | ATATGGTATTGGCCATCCAA+AGG | - | chr6_1:67764123-67764142 | None:intergenic | 40.0% |
| TTTCTCTCGAAGCTCTTTCA+TGG | - | chr6_1:67764290-67764309 | None:intergenic | 40.0% | |
| AAGTAACGACGGATGGTAAA+GGG | - | chr6_1:67764319-67764338 | None:intergenic | 40.0% | |
| CACAGTAATTACCTTCCATC+AGG | - | chr6_1:67764343-67764362 | None:intergenic | 40.0% | |
| !!! | TAGTTTTGGAAATGGGTGAG+TGG | + | chr6_1:67764383-67764402 | Msa0891710:intron | 40.0% |
| TTGTGCAGCTATGAAGATTG+GGG | + | chr6_1:67764464-67764483 | Msa0891710:intron | 40.0% | |
| !! | GGGAGTTGATGAATTGATTG+TGG | + | chr6_1:67764484-67764503 | Msa0891710:CDS | 40.0% |
| CGACGACGAGTATAATGACT+TGG | + | chr6_1:67761728-67761747 | Msa0891710:CDS | 45.0% | |
| ! | TAGATGTGTCGGTGCTTCAT+AGG | - | chr6_1:67762083-67762102 | None:intergenic | 45.0% |
| ! | TTTTGTACGTTCTCCAGGAC+AGG | + | chr6_1:67762271-67762290 | Msa0891710:intron | 45.0% |
| !! | TGAACTATGAAGCACCGACA+CGG | + | chr6_1:67762491-67762510 | Msa0891710:intron | 45.0% |
| TACTACCAGTGTCAACGTGT+CGG | - | chr6_1:67762531-67762550 | None:intergenic | 45.0% | |
| !! | TGTCGGTGTCGTGTTGATAT+CGG | + | chr6_1:67762592-67762611 | Msa0891710:intron | 45.0% |
| GACAACAATGATGAGATGGC+TGG | + | chr6_1:67762983-67763002 | Msa0891710:CDS | 45.0% | |
| GCCTATTGAAACCGAGGAAA+AGG | + | chr6_1:67763009-67763028 | Msa0891710:CDS | 45.0% | |
| AATTCGTGCACGCTCATACT+TGG | - | chr6_1:67763083-67763102 | None:intergenic | 45.0% | |
| ! | GTATGAGCGTGCACGAATTT+TGG | + | chr6_1:67763084-67763103 | Msa0891710:CDS | 45.0% |
| !! | CTGTCATGGTTGAGTTGGAA+GGG | + | chr6_1:67763243-67763262 | Msa0891710:CDS | 45.0% |
| !! | TGTCATGGTTGAGTTGGAAG+GGG | + | chr6_1:67763244-67763263 | Msa0891710:CDS | 45.0% |
| AAGTTTCTCGTACCTCAAGC+GGG | - | chr6_1:67763277-67763296 | None:intergenic | 45.0% | |
| CCATTCCATACGAATACCAC+TGG | - | chr6_1:67763477-67763496 | None:intergenic | 45.0% | |
| CCAGTGGTATTCGTATGGAA+TGG | + | chr6_1:67763474-67763493 | Msa0891710:intron | 45.0% | |
| GTGGTATTCGTATGGAATGG+GGG | + | chr6_1:67763477-67763496 | Msa0891710:intron | 45.0% | |
| TGGTATTCGTATGGAATGGG+GGG | + | chr6_1:67763478-67763497 | Msa0891710:intron | 45.0% | |
| TGACCCTCCTTCCTAGTTAA+TGG | + | chr6_1:67763545-67763564 | Msa0891710:intron | 45.0% | |
| GACTCCATTAACTAGGAAGG+AGG | - | chr6_1:67763552-67763571 | None:intergenic | 45.0% | |
| GGAGTCCTTGACTCTAACTA+TGG | + | chr6_1:67763566-67763585 | Msa0891710:intron | 45.0% | |
| CACAGCCATAGTTAGAGTCA+AGG | - | chr6_1:67763574-67763593 | None:intergenic | 45.0% | |
| CTTGACTCTAACTATGGCTG+TGG | + | chr6_1:67763572-67763591 | Msa0891710:intron | 45.0% | |
| !! | GGAAGGCTGATTTTCTTGTG+AGG | + | chr6_1:67763751-67763770 | Msa0891710:intron | 45.0% |
| !! | GCTGATTTTCTTGTGAGGCA+GGG | + | chr6_1:67763756-67763775 | Msa0891710:intron | 45.0% |
| GGCAGGGTTGTCTTTAAATC+AGG | + | chr6_1:67763772-67763791 | Msa0891710:intron | 45.0% | |
| AGTTCATGTTTCCTTTGCCC+TGG | + | chr6_1:67763864-67763883 | Msa0891710:intron | 45.0% | |
| CAAGTAACGACGGATGGTAA+AGG | - | chr6_1:67764320-67764339 | None:intergenic | 45.0% | |
| TTCCATCAGGCAAGTAACGA+CGG | - | chr6_1:67764330-67764349 | None:intergenic | 45.0% | |
| ACAGAAAACGCATGGCATGA+AGG | - | chr6_1:67764434-67764453 | None:intergenic | 45.0% | |
| TTGTGGAAGACTCATGGAAG+AGG | + | chr6_1:67764501-67764520 | Msa0891710:CDS | 45.0% | |
| GACTCATGGAAGAGGCAAAT+TGG | + | chr6_1:67764509-67764528 | Msa0891710:CDS | 45.0% | |
| TCATGGAAGAGGCAAATTGG+TGG | + | chr6_1:67764512-67764531 | Msa0891710:CDS | 45.0% | |
| !! | GGCAAATTGGTGGTGATTGA+TGG | + | chr6_1:67764522-67764541 | Msa0891710:CDS | 45.0% |
| !!! | TATATTTTTATTTTGAAATA+TGG | - | chr6_1:67763637-67763656 | None:intergenic | 5.0% |
| CAGAACGAGCTTCAGCGTAA+GGG | + | chr6_1:67761688-67761707 | Msa0891710:five_prime_UTR | 50.0% | |
| !! | AAGCACCGACACATCTACAC+TGG | + | chr6_1:67762086-67762105 | Msa0891710:intron | 50.0% |
| CACCAACACCTCTGATTGTC+CGG | - | chr6_1:67762168-67762187 | None:intergenic | 50.0% | |
| ! | GCACTGACACATCTGATCGA+AGG | - | chr6_1:67762647-67762666 | None:intergenic | 50.0% |
| !! | TGGTTGATAGGAAGGTGCAG+AGG | + | chr6_1:67762943-67762962 | Msa0891710:intron | 50.0% |
| ! | TTGATAGGAAGGTGCAGAGG+TGG | + | chr6_1:67762946-67762965 | Msa0891710:intron | 50.0% |
| TGGAGAGCCTATTGAAACCG+AGG | + | chr6_1:67763003-67763022 | Msa0891710:CDS | 50.0% | |
| GTCTTTCGAGGCCTTTCTGT+TGG | - | chr6_1:67763046-67763065 | None:intergenic | 50.0% | |
| GTACCCGTGCTCTTCAAATC+AGG | + | chr6_1:67763107-67763126 | Msa0891710:CDS | 50.0% | |
| TGCACCTGTCATGGTTGAGT+TGG | + | chr6_1:67763238-67763257 | Msa0891710:CDS | 50.0% | |
| CCTTCCAACTCAACCATGAC+AGG | - | chr6_1:67763245-67763264 | None:intergenic | 50.0% | |
| !! | CCTGTCATGGTTGAGTTGGA+AGG | + | chr6_1:67763242-67763261 | Msa0891710:CDS | 50.0% |
| ATCTCGTCGGTATAGACCAG+TGG | + | chr6_1:67763458-67763477 | Msa0891710:intron | 50.0% | |
| !! | GGCTGATTTTCTTGTGAGGC+AGG | + | chr6_1:67763755-67763774 | Msa0891710:intron | 50.0% |
| ATCAGGCAAGTAACGACGGA+TGG | - | chr6_1:67764326-67764345 | None:intergenic | 50.0% | |
| ATCCGTCGTTACTTGCCTGA+TGG | + | chr6_1:67764325-67764344 | Msa0891710:CDS | 50.0% | |
| GTCGTTACTTGCCTGATGGA+AGG | + | chr6_1:67764329-67764348 | Msa0891710:CDS | 50.0% | |
| GCAGAACGAGCTTCAGCGTA+AGG | + | chr6_1:67761687-67761706 | Msa0891710:five_prime_UTR | 55.0% | |
| !! | CATGTGTCGGTGTTGGACAC+CGG | + | chr6_1:67762146-67762165 | Msa0891710:intron | 55.0% |
| GTTGGACACCGGACAATCAG+AGG | + | chr6_1:67762157-67762176 | Msa0891710:intron | 55.0% | |
| ! | CACCGGACAATCAGAGGTGT+TGG | + | chr6_1:67762163-67762182 | Msa0891710:intron | 55.0% |
| !! | CAGAGGTGTTGGTGCTACAG+AGG | + | chr6_1:67762174-67762193 | Msa0891710:intron | 55.0% |
| TGCCAGTGTTGTGTCCGTGT+CGG | - | chr6_1:67762508-67762527 | None:intergenic | 55.0% | |
| ! | CATCTGATCGAAGGCGTGTC+TGG | - | chr6_1:67762638-67762657 | None:intergenic | 55.0% |
| CATTTACAGGGCCAGGGCAA+AGG | - | chr6_1:67763878-67763897 | None:intergenic | 55.0% | |
| CACCGACACGGACACAACAC+TGG | + | chr6_1:67762503-67762522 | Msa0891710:intron | 60.0% | |
| !! | TGGCACCGACACGTTGACAC+TGG | + | chr6_1:67762523-67762542 | Msa0891710:intron | 60.0% |
| AGGGGAGACTGACCCGCTTG+AGG | + | chr6_1:67763262-67763281 | Msa0891710:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 67761661 | 67764775 | 67761661 | ID=Msa0891710;Name=Msa0891710 |
| chr6_1 | mRNA | 67761661 | 67764775 | 67761661 | ID=Msa0891710-mRNA-1;Parent=Msa0891710;Name=Msa0891710-mRNA-1;_AED=0.03;_eAED=0.03;_QI=62|1|1|1|1|1|6|234|144 |
| chr6_1 | exon | 67761661 | 67761757 | 67761661 | ID=Msa0891710-mRNA-1:exon:12029;Parent=Msa0891710-mRNA-1 |
| chr6_1 | exon | 67762828 | 67762861 | 67762828 | ID=Msa0891710-mRNA-1:exon:12030;Parent=Msa0891710-mRNA-1 |
| chr6_1 | exon | 67762953 | 67763128 | 67762953 | ID=Msa0891710-mRNA-1:exon:12031;Parent=Msa0891710-mRNA-1 |
| chr6_1 | exon | 67763232 | 67763283 | 67763232 | ID=Msa0891710-mRNA-1:exon:12032;Parent=Msa0891710-mRNA-1 |
| chr6_1 | exon | 67764283 | 67764350 | 67764283 | ID=Msa0891710-mRNA-1:exon:12033;Parent=Msa0891710-mRNA-1 |
| chr6_1 | exon | 67764472 | 67764775 | 67764472 | ID=Msa0891710-mRNA-1:exon:12034;Parent=Msa0891710-mRNA-1 |
| chr6_1 | five_prime_UTR | 67761661 | 67761722 | 67761661 | ID=Msa0891710-mRNA-1:five_prime_utr;Parent=Msa0891710-mRNA-1 |
| chr6_1 | CDS | 67761723 | 67761757 | 67761723 | ID=Msa0891710-mRNA-1:cds;Parent=Msa0891710-mRNA-1 |
| chr6_1 | CDS | 67762828 | 67762861 | 67762828 | ID=Msa0891710-mRNA-1:cds;Parent=Msa0891710-mRNA-1 |
| chr6_1 | CDS | 67762953 | 67763128 | 67762953 | ID=Msa0891710-mRNA-1:cds;Parent=Msa0891710-mRNA-1 |
| chr6_1 | CDS | 67763232 | 67763283 | 67763232 | ID=Msa0891710-mRNA-1:cds;Parent=Msa0891710-mRNA-1 |
| chr6_1 | CDS | 67764283 | 67764350 | 67764283 | ID=Msa0891710-mRNA-1:cds;Parent=Msa0891710-mRNA-1 |
| chr6_1 | CDS | 67764472 | 67764541 | 67764472 | ID=Msa0891710-mRNA-1:cds;Parent=Msa0891710-mRNA-1 |
| chr6_1 | three_prime_UTR | 67764542 | 67764775 | 67764542 | ID=Msa0891710-mRNA-1:three_prime_utr;Parent=Msa0891710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
