AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0572840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572840 MtrunA17_Chr8g0388461 93.678 174 6 1 1 174 1 169 7.23e-97 277
Msa0572840 MtrunA17_Chr7g0275791 48.864 176 82 3 3 174 2 173 2.89e-44 149
Msa0572840 MtrunA17_Chr3g0130571 36.937 111 69 1 60 170 31 140 2.09e-19 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0572840 AT4G10920.2 52.795 161 68 3 14 174 13 165 1.79e-49 157
Msa0572840 AT4G10920.1 52.795 161 68 3 14 174 13 165 1.79e-49 157
Msa0572840 AT5G09250.1 36.275 102 62 1 67 168 6 104 1.46e-19 79.3
Msa0572840 AT5G09250.3 46.032 63 34 0 105 167 44 106 3.27e-16 70.9
Msa0572840 AT5G09250.4 37.500 88 52 1 67 154 6 90 1.47e-15 69.3
Msa0572840 AT4G00980.1 31.325 166 98 3 9 174 19 168 8.42e-15 71.6
Msa0572840 AT5G09240.1 42.424 66 36 1 104 167 39 104 4.23e-13 62.8
Msa0572840 AT5G09250.2 35.443 79 48 1 67 145 6 81 2.11e-12 60.5
Msa0572840 AT5G09250.5 35.443 79 48 1 67 145 6 81 2.11e-12 60.5

Find 54 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAACAAGCCATTCAGAAAA+AGG 0.298415 4_1:+75796136 Msa0572840:CDS
TTCGATTCTTCCTTTGGTTT+CGG 0.299411 4_1:-75793316 None:intergenic
TGAGGCTTGCTTTCGAATCT+TGG 0.308290 4_1:-75793391 None:intergenic
TGTTTCTTCGATTCTTCCTT+TGG 0.317008 4_1:-75793322 None:intergenic
TAATCATACAAATTTCTTAT+CGG 0.321341 4_1:-75796514 None:intergenic
ACAAAATGACACTAAGATTC+AGG 0.341487 4_1:-75796302 None:intergenic
CGTCCATGTTTGATTCTTGA+AGG 0.351225 4_1:-75793356 None:intergenic
CATCAGAGAGAATTAATATA+TGG 0.357633 4_1:-75796471 None:intergenic
GCTGAGCTCACCGGTTCTTT+CGG 0.365351 4_1:-75793273 None:intergenic
AAAGAGAAAGGTGACAATTC+AGG 0.366183 4_1:+75793758 Msa0572840:CDS
AAAGCAAGCCTCAAATGAAT+TGG 0.387647 4_1:+75793401 Msa0572840:CDS
AGCACTGTTTATGATGATTC+CGG 0.391789 4_1:+75793591 Msa0572840:CDS
CTTGGTATAAAACTCTCTAA+TGG 0.394017 4_1:-75793805 None:intergenic
CGGAGAAAGGGGTTAGTAAA+GGG 0.399133 4_1:-75793253 None:intergenic
AAAGAACTTCCTTCTTCTAA+AGG 0.401625 4_1:+75793834 Msa0572840:CDS
TGAATGGCTTGTTCTATGTC+AGG 0.401909 4_1:-75796128 None:intergenic
CACCGGTTCTTTCGGAGAAA+GGG 0.409248 4_1:-75793265 None:intergenic
TTGCTTTCGAATCTTGGATT+CGG 0.412374 4_1:-75793385 None:intergenic
AGGAAGTTCTTTGCCATCCT+TGG 0.414306 4_1:-75793823 None:intergenic
CTTTGAAGGGAGGCTGAGAT+AGG 0.417924 4_1:-75793431 None:intergenic
ATTTCAAGTCCTGAACAAAA+TGG 0.421684 4_1:-75796332 None:intergenic
TTGCTTGACGAAGGCTTTGA+AGG 0.429051 4_1:-75793445 None:intergenic
TCACCGGTTCTTTCGGAGAA+AGG 0.441096 4_1:-75793266 None:intergenic
TGAATACTTCAACCTGCATA+TGG 0.452162 4_1:-75796187 None:intergenic
AGAAGAAGAAGAGAAACAAC+AGG 0.454315 4_1:+75793542 Msa0572840:CDS
AGTCTTCAGTGTAGTGCAGC+TGG 0.467884 4_1:+75796377 Msa0572840:three_prime_UTR
ACAACTTTACCTTTAGAAGA+AGG 0.476393 4_1:-75793843 None:intergenic
GCAGCAAGAACAACAGAAAG+AGG 0.479297 4_1:+75793494 Msa0572840:CDS
GTTAAGATCCAATTCATTTG+AGG 0.479566 4_1:-75793409 None:intergenic
ACCCCTTTCTCCGAAAGAAC+CGG 0.484156 4_1:+75793263 Msa0572840:five_prime_UTR
TCGGAGAAAGGGGTTAGTAA+AGG 0.485005 4_1:-75793254 None:intergenic
CATATATTAATTCTCTCTGA+TGG 0.495389 4_1:+75796472 Msa0572840:three_prime_UTR
GTGACAATTCAGGATTTCAA+AGG 0.497487 4_1:+75793768 Msa0572840:CDS
GCAGCTGGAGTAGAATTTGT+AGG 0.500031 4_1:+75796392 Msa0572840:three_prime_UTR
TGACAATTCAGGATTTCAAA+GGG 0.528976 4_1:+75793769 Msa0572840:CDS
TTCAGGAATAAGTTTGACTC+AGG 0.531614 4_1:+75796076 Msa0572840:intron
TCAAGTATCACCACATCACT+TGG 0.535742 4_1:-75796229 None:intergenic
TTCGATGATTTGCTTGACGA+AGG 0.545920 4_1:-75793454 None:intergenic
TGCTTGACGAAGGCTTTGAA+GGG 0.552385 4_1:-75793444 None:intergenic
ACGAGATGACTTCCATATGC+AGG 0.564861 4_1:+75796175 Msa0572840:three_prime_UTR
GAAACAACAGGTTAAACAAG+AGG 0.566821 4_1:+75793554 Msa0572840:CDS
TTGACGAAGGCTTTGAAGGG+AGG 0.568942 4_1:-75793441 None:intergenic
ACCGGTTCTTTCGGAGAAAG+GGG 0.586095 4_1:-75793264 None:intergenic
AGAGAGAATTAATATATGGA+AGG 0.591935 4_1:-75796467 None:intergenic
ATGGATGACGCCGAAACCAA+AGG 0.594413 4_1:+75793306 Msa0572840:CDS
TTGTAGGAAAACTCTAGAGA+AGG 0.594658 4_1:+75796408 Msa0572840:three_prime_UTR
TTTGACACAGCTGAGCTCAC+CGG 0.600885 4_1:-75793282 None:intergenic
CTCGCAGATGACTAGATCAC+CGG 0.601997 4_1:-75793610 None:intergenic
TAAGTTTGACTCAGGAGCAG+TGG 0.602755 4_1:+75796084 Msa0572840:CDS
AAACAACAGGTTAAACAAGA+GGG 0.617440 4_1:+75793555 Msa0572840:CDS
CTTATGATTGCCAAGTGATG+TGG 0.624237 4_1:+75796219 Msa0572840:three_prime_UTR
AGTCCTGAACAAAATGGTCG+AGG 0.628397 4_1:-75796326 None:intergenic
GATCCTTCAAGAATCAAACA+TGG 0.657064 4_1:+75793353 Msa0572840:CDS
CGGTGATCTAGTCATCTGCG+AGG 0.722262 4_1:+75793611 Msa0572840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTTGAAAATGATAA+AGG + chr4_1:75794801-75794820 Msa0572840:intron 10.0%
!!! TATTTTTTTTTACTTTTCAT+TGG + chr4_1:75795418-75795437 Msa0572840:intron 10.0%
!! GTCATATTATATAAAAGAAA+TGG - chr4_1:75794240-75794259 None:intergenic 15.0%
!! TCATACAAAAAAAAAAATCA+TGG - chr4_1:75794710-75794729 None:intergenic 15.0%
!!! AAACACCTTTTATTATAAAT+AGG + chr4_1:75794770-75794789 Msa0572840:intron 15.0%
!! TTCTACCTATTTATAATAAA+AGG - chr4_1:75794778-75794797 None:intergenic 15.0%
!!! AAGTATATCTACTTTTAATA+TGG + chr4_1:75795057-75795076 Msa0572840:intron 15.0%
!! AATGTTTCTTAGATATTAAA+TGG - chr4_1:75795266-75795285 None:intergenic 15.0%
!! TTTAATATCTAAGAAACATT+AGG + chr4_1:75795266-75795285 Msa0572840:intron 15.0%
!! TTAATATCTAAGAAACATTA+GGG + chr4_1:75795267-75795286 Msa0572840:intron 15.0%
!! TCATATATAATTTAGCAAAT+AGG + chr4_1:75795698-75795717 Msa0572840:intron 15.0%
!! TAATCATACAAATTTCTTAT+CGG - chr4_1:75796517-75796536 None:intergenic 15.0%
!! AGACTAATTGATAGAAATTA+TGG - chr4_1:75793905-75793924 None:intergenic 20.0%
!!! GCTAATTAGCTTAAATTTAA+CGG - chr4_1:75793971-75793990 None:intergenic 20.0%
!! TGTGCAAGTTAATAATAATT+TGG - chr4_1:75794109-75794128 None:intergenic 20.0%
!!! ATAATATGACATTGATTTTC+AGG + chr4_1:75794250-75794269 Msa0572840:intron 20.0%
!! AAAGAAAAAAAACATGAGTA+TGG + chr4_1:75794948-75794967 Msa0572840:intron 20.0%
!!! ATCTACTTTTAATATGGTAT+TGG + chr4_1:75795063-75795082 Msa0572840:intron 20.0%
!! AATTTATACAGTTTGAACTT+TGG + chr4_1:75795188-75795207 Msa0572840:intron 20.0%
!!! TAAGTTCTAACTAGTAAAAT+TGG - chr4_1:75795473-75795492 None:intergenic 20.0%
!!! ATTTTAATGCCAAACTTAAA+AGG - chr4_1:75795547-75795566 None:intergenic 20.0%
!!! GTTTTATCTATAACTTTTCA+CGG - chr4_1:75795843-75795862 None:intergenic 20.0%
!! ATTTCGATTCAAATGTTTAT+CGG + chr4_1:75795874-75795893 Msa0572840:intron 20.0%
!! GAAACACAAAAATTAGAATT+TGG - chr4_1:75796059-75796078 None:intergenic 20.0%
!!! AATTCTAATTTTTGTGTTTC+AGG + chr4_1:75796059-75796078 Msa0572840:intron 20.0%
! GAGAGTAAAAAATTACGAAA+CGG - chr4_1:75793638-75793657 None:intergenic 25.0%
! TTAACGATGAAATCAATTCA+TGG + chr4_1:75793678-75793697 Msa0572840:intron 25.0%
! TAACGATGAAATCAATTCAT+GGG + chr4_1:75793679-75793698 Msa0572840:intron 25.0%
! CCAAAATAATAATGTTAACC+AGG - chr4_1:75793717-75793736 None:intergenic 25.0%
!! CCTGGTTAACATTATTATTT+TGG + chr4_1:75793714-75793733 Msa0572840:intron 25.0%
! AGATTTCATCTTTCATTCTA+AGG - chr4_1:75794086-75794105 None:intergenic 25.0%
! ATTTCTTGACAATAGAACTT+AGG - chr4_1:75794141-75794160 None:intergenic 25.0%
! TTGTCAAGAAATATCAAGAT+TGG + chr4_1:75794149-75794168 Msa0572840:intron 25.0%
!! ATTGGATTAGAAACAGTTAA+AGG + chr4_1:75794167-75794186 Msa0572840:intron 25.0%
! AGAACAATAGAGAGAATAAA+GGG + chr4_1:75794361-75794380 Msa0572840:intron 25.0%
! AATGCAGTTTCGAATAAATA+GGG - chr4_1:75794440-75794459 None:intergenic 25.0%
!! GCTTATATGAACCTTTAAAA+AGG - chr4_1:75794641-75794660 None:intergenic 25.0%
! ATTTGAAAATGATAAAGGCA+TGG + chr4_1:75794806-75794825 Msa0572840:intron 25.0%
!! AGTAGATATACTTGTGATTT+TGG - chr4_1:75795050-75795069 None:intergenic 25.0%
! ATTAGGGTTCAAAATAAGTT+GGG + chr4_1:75795283-75795302 Msa0572840:intron 25.0%
! TGAACAGAGTTAAGTAATAT+TGG - chr4_1:75795319-75795338 None:intergenic 25.0%
! ACTACTCATACTATCATATA+GGG - chr4_1:75795627-75795646 None:intergenic 25.0%
! TACTACTCATACTATCATAT+AGG - chr4_1:75795628-75795647 None:intergenic 25.0%
!! ACGTAACTATGTGTTTTATA+AGG - chr4_1:75796016-75796035 None:intergenic 25.0%
! ATAGTTACGTTCTATAATTG+AGG + chr4_1:75796026-75796045 Msa0572840:intron 25.0%
! TAGTTACGTTCTATAATTGA+GGG + chr4_1:75796027-75796046 Msa0572840:intron 25.0%
! AGAGAGAATTAATATATGGA+AGG - chr4_1:75796470-75796489 None:intergenic 25.0%
! CATCAGAGAGAATTAATATA+TGG - chr4_1:75796474-75796493 None:intergenic 25.0%
! CATATATTAATTCTCTCTGA+TGG + chr4_1:75796472-75796491 Msa0572840:three_prime_UTR 25.0%
GTTAAGATCCAATTCATTTG+AGG - chr4_1:75793412-75793431 None:intergenic 30.0%
AAACAACAGGTTAAACAAGA+GGG + chr4_1:75793555-75793574 Msa0572840:CDS 30.0%
! ATCATAAACAGTGCTTTTGT+TGG - chr4_1:75793586-75793605 None:intergenic 30.0%
! GAATTGATTTCATCGTTAAC+CGG - chr4_1:75793677-75793696 None:intergenic 30.0%
TGAAATCAATTCATGGGAAA+AGG + chr4_1:75793685-75793704 Msa0572840:intron 30.0%
GAAATCAATTCATGGGAAAA+GGG + chr4_1:75793686-75793705 Msa0572840:intron 30.0%
TGACAATTCAGGATTTCAAA+GGG + chr4_1:75793769-75793788 Msa0572840:CDS 30.0%
CTTGGTATAAAACTCTCTAA+TGG - chr4_1:75793808-75793827 None:intergenic 30.0%
!! CATTAGAGAGTTTTATACCA+AGG + chr4_1:75793806-75793825 Msa0572840:CDS 30.0%
AAAGAACTTCCTTCTTCTAA+AGG + chr4_1:75793834-75793853 Msa0572840:CDS 30.0%
! ACAACTTTACCTTTAGAAGA+AGG - chr4_1:75793846-75793865 None:intergenic 30.0%
GGAAACATCTTATGAACTTA+TGG - chr4_1:75793884-75793903 None:intergenic 30.0%
GAGAACAATAGAGAGAATAA+AGG + chr4_1:75794360-75794379 Msa0572840:intron 30.0%
GAATGCAGTTTCGAATAAAT+AGG - chr4_1:75794441-75794460 None:intergenic 30.0%
TTATTCGAAACTGCATTCTA+AGG + chr4_1:75794443-75794462 Msa0572840:intron 30.0%
TCTTAAAAGCTAGCTATCAA+GGG + chr4_1:75794513-75794532 Msa0572840:intron 30.0%
CTCTTAATTAATACTCGATG+CGG + chr4_1:75794549-75794568 Msa0572840:intron 30.0%
TCTTAATTAATACTCGATGC+GGG + chr4_1:75794550-75794569 Msa0572840:intron 30.0%
! TGAACCTTTAAAAAGGAACA+CGG - chr4_1:75794634-75794653 None:intergenic 30.0%
TCAGATTTGTCATTGTTGAT+AGG - chr4_1:75794683-75794702 None:intergenic 30.0%
! AAAATGATAAAGGCATGGAA+TGG + chr4_1:75794811-75794830 Msa0572840:intron 30.0%
AAGTTCTTGAGTCTCTAATT+TGG - chr4_1:75794864-75794883 None:intergenic 30.0%
GACACGATGATCTATATATT+TGG + chr4_1:75794889-75794908 Msa0572840:intron 30.0%
ATAACATGACTACATGAGTA+TGG + chr4_1:75794915-75794934 Msa0572840:intron 30.0%
!!! TTTTAATATGGTATTGGCCT+TGG + chr4_1:75795069-75795088 Msa0572840:intron 30.0%
TATTAAATGGAGCACAACAA+GGG - chr4_1:75795253-75795272 None:intergenic 30.0%
ATATTAAATGGAGCACAACA+AGG - chr4_1:75795254-75795273 None:intergenic 30.0%
CATTAGGGTTCAAAATAAGT+TGG + chr4_1:75795282-75795301 Msa0572840:intron 30.0%
TTAGGGTTCAAAATAAGTTG+GGG + chr4_1:75795284-75795303 Msa0572840:intron 30.0%
GTTAAGTAATATTGGCAACA+AGG - chr4_1:75795311-75795330 None:intergenic 30.0%
TAGTTAGAACTTAGATGTCT+CGG + chr4_1:75795480-75795499 Msa0572840:intron 30.0%
TTAAAAGGAAGTTCTCAACT+GGG - chr4_1:75795532-75795551 None:intergenic 30.0%
!!! TGAGAACTTCCTTTTAAGTT+TGG + chr4_1:75795535-75795554 Msa0572840:intron 30.0%
GCTTATTTAGTGCTAAATTC+TGG + chr4_1:75795583-75795602 Msa0572840:intron 30.0%
CTACTCATACTATCATATAG+GGG - chr4_1:75795626-75795645 None:intergenic 30.0%
ACCAAGAAATTCAGAAAAGA+TGG + chr4_1:75795728-75795747 Msa0572840:intron 30.0%
! ACCATCTTTTCTGAATTTCT+TGG - chr4_1:75795732-75795751 None:intergenic 30.0%
!!! AAGATGGTTAGTGTTGTTTT+AGG + chr4_1:75795744-75795763 Msa0572840:intron 30.0%
CATGATAAAAATTAGTCCAC+CGG + chr4_1:75795800-75795819 Msa0572840:intron 30.0%
TGAATCGAAATCTCTGTTAA+TGG - chr4_1:75795865-75795884 None:intergenic 30.0%
ACAAAATGACACTAAGATTC+AGG - chr4_1:75796305-75796324 None:intergenic 30.0%
! ATTTCAAGTCCTGAACAAAA+TGG - chr4_1:75796335-75796354 None:intergenic 30.0%
! TTCGATTCTTCCTTTGGTTT+CGG - chr4_1:75793319-75793338 None:intergenic 35.0%
TGTTTCTTCGATTCTTCCTT+TGG - chr4_1:75793325-75793344 None:intergenic 35.0%
GATCCTTCAAGAATCAAACA+TGG + chr4_1:75793353-75793372 Msa0572840:CDS 35.0%
TTGCTTTCGAATCTTGGATT+CGG - chr4_1:75793388-75793407 None:intergenic 35.0%
AAAGCAAGCCTCAAATGAAT+TGG + chr4_1:75793401-75793420 Msa0572840:CDS 35.0%
CAGAAAGAGGAAAAAGAAGA+AGG + chr4_1:75793507-75793526 Msa0572840:CDS 35.0%
AGAAGAAGAAGAGAAACAAC+AGG + chr4_1:75793542-75793561 Msa0572840:CDS 35.0%
GAAACAACAGGTTAAACAAG+AGG + chr4_1:75793554-75793573 Msa0572840:CDS 35.0%
AGCACTGTTTATGATGATTC+CGG + chr4_1:75793591-75793610 Msa0572840:CDS 35.0%
!!! TTTGGTTTTGCATTTCAGCT+TGG + chr4_1:75793732-75793751 Msa0572840:intron 35.0%
TCAGCTTGGAAAAAAGAGAA+AGG + chr4_1:75793746-75793765 Msa0572840:intron 35.0%
AAAGAGAAAGGTGACAATTC+AGG + chr4_1:75793758-75793777 Msa0572840:CDS 35.0%
GTGACAATTCAGGATTTCAA+AGG + chr4_1:75793768-75793787 Msa0572840:CDS 35.0%
!! AGAGAGTTTTATACCAAGGA+TGG + chr4_1:75793810-75793829 Msa0572840:CDS 35.0%
AATTTAACGGCCAAGGATAA+GGG - chr4_1:75793958-75793977 None:intergenic 35.0%
AAATTTAACGGCCAAGGATA+AGG - chr4_1:75793959-75793978 None:intergenic 35.0%
TAGCTTAAATTTAACGGCCA+AGG - chr4_1:75793965-75793984 None:intergenic 35.0%
AAGCTAATTAGCAAAAAGCG+AGG + chr4_1:75793979-75793998 Msa0572840:intron 35.0%
AGAGAATAAAGGGATTTGAG+TGG + chr4_1:75794371-75794390 Msa0572840:intron 35.0%
TGGAATGTGACAGTTTACAA+TGG + chr4_1:75794391-75794410 Msa0572840:intron 35.0%
AAATAGGGAAGCTATGCAAT+TGG - chr4_1:75794425-75794444 None:intergenic 35.0%
! CTGGCTTATTTCTCACAATA+GGG + chr4_1:75794483-75794502 Msa0572840:intron 35.0%
CTCTTAAAAGCTAGCTATCA+AGG + chr4_1:75794512-75794531 Msa0572840:intron 35.0%
CTTAAAAGCTAGCTATCAAG+GGG + chr4_1:75794514-75794533 Msa0572840:intron 35.0%
CGCATCGAGTATTAATTAAG+AGG - chr4_1:75794551-75794570 None:intergenic 35.0%
TCGGATTAAGGATGTTGATA+GGG - chr4_1:75794597-75794616 None:intergenic 35.0%
TTCGGATTAAGGATGTTGAT+AGG - chr4_1:75794598-75794617 None:intergenic 35.0%
!! TGTAGAAGCATTTCGGATTA+AGG - chr4_1:75794609-75794628 None:intergenic 35.0%
! CAAACCGTGTTCCTTTTTAA+AGG + chr4_1:75794627-75794646 Msa0572840:intron 35.0%
! TGGCCTTGGTTATATACTAT+AGG + chr4_1:75795083-75795102 Msa0572840:intron 35.0%
CCACCTATAGTATATAACCA+AGG - chr4_1:75795089-75795108 None:intergenic 35.0%
CCTTGGTTATATACTATAGG+TGG + chr4_1:75795086-75795105 Msa0572840:intron 35.0%
TCTCACTTTAGCATTTCTCA+TGG + chr4_1:75795138-75795157 Msa0572840:intron 35.0%
TAGCATTTCTCATGGATGTT+TGG + chr4_1:75795146-75795165 Msa0572840:intron 35.0%
! TAGGGTTCAAAATAAGTTGG+GGG + chr4_1:75795285-75795304 Msa0572840:intron 35.0%
CTTAAAAGGAAGTTCTCAAC+TGG - chr4_1:75795533-75795552 None:intergenic 35.0%
CATACTATCATATAGGGGAA+GGG - chr4_1:75795621-75795640 None:intergenic 35.0%
TCATACTATCATATAGGGGA+AGG - chr4_1:75795622-75795641 None:intergenic 35.0%
!!! ATGGTTAGTGTTGTTTTAGG+TGG + chr4_1:75795747-75795766 Msa0572840:intron 35.0%
ATAAAAATTAGTCCACCGGT+TGG + chr4_1:75795804-75795823 Msa0572840:intron 35.0%
TTCAGGAATAAGTTTGACTC+AGG + chr4_1:75796076-75796095 Msa0572840:intron 35.0%
AGAACAAGCCATTCAGAAAA+AGG + chr4_1:75796136-75796155 Msa0572840:CDS 35.0%
AAAAAGGAGTCACGTGTATA+AGG + chr4_1:75796152-75796171 Msa0572840:CDS 35.0%
TGAATACTTCAACCTGCATA+TGG - chr4_1:75796190-75796209 None:intergenic 35.0%
! TTGTAGGAAAACTCTAGAGA+AGG + chr4_1:75796408-75796427 Msa0572840:three_prime_UTR 35.0%
CGTCCATGTTTGATTCTTGA+AGG - chr4_1:75793359-75793378 None:intergenic 40.0%
!! TTCGATGATTTGCTTGACGA+AGG - chr4_1:75793457-75793476 None:intergenic 40.0%
TCCAAACAAACCCTTATCCT+TGG + chr4_1:75793945-75793964 Msa0572840:intron 40.0%
ATTAGCAAAAAGCGAGGCAA+CGG + chr4_1:75793985-75794004 Msa0572840:intron 40.0%
!! GATTTTCAGGAGACATCTGA+TGG + chr4_1:75794263-75794282 Msa0572840:intron 40.0%
! GCTGGCTTATTTCTCACAAT+AGG + chr4_1:75794482-75794501 Msa0572840:intron 40.0%
! TTAAGGATGTTGATAGGGAC+CGG - chr4_1:75794592-75794611 None:intergenic 40.0%
!! CACGGTTTGTAGAAGCATTT+CGG - chr4_1:75794616-75794635 None:intergenic 40.0%
GTAGTTATCGTTTCTGTCTG+AGG + chr4_1:75794997-75795016 Msa0572840:intron 40.0%
GAGCTTTCATGATTCGTGTA+AGG - chr4_1:75795361-75795380 None:intergenic 40.0%
GCCAAATTGATCTGCTTTGT+TGG + chr4_1:75795666-75795685 Msa0572840:intron 40.0%
GCCAACAAAGCAGATCAATT+TGG - chr4_1:75795670-75795689 None:intergenic 40.0%
! GTCAGGCACAATTTTCTTGA+AGG - chr4_1:75796114-75796133 None:intergenic 40.0%
!! TGAATGGCTTGTTCTATGTC+AGG - chr4_1:75796131-75796150 None:intergenic 40.0%
! ACGTGACTCCTTTTTCTGAA+TGG - chr4_1:75796147-75796166 None:intergenic 40.0%
CTTATGATTGCCAAGTGATG+TGG + chr4_1:75796219-75796238 Msa0572840:three_prime_UTR 40.0%
TCAAGTATCACCACATCACT+TGG - chr4_1:75796232-75796251 None:intergenic 40.0%
!!! CTCTCTGATGGTTTTGTGTT+TGG + chr4_1:75796484-75796503 Msa0572840:three_prime_UTR 40.0%
! CGGAGAAAGGGGTTAGTAAA+GGG - chr4_1:75793256-75793275 None:intergenic 45.0%
! TCGGAGAAAGGGGTTAGTAA+AGG - chr4_1:75793257-75793276 None:intergenic 45.0%
GAGCTCAGCTGTGTCAAAAA+TGG + chr4_1:75793287-75793306 Msa0572840:exon 45.0%
! TGAGGCTTGCTTTCGAATCT+TGG - chr4_1:75793394-75793413 None:intergenic 45.0%
!! TGCTTGACGAAGGCTTTGAA+GGG - chr4_1:75793447-75793466 None:intergenic 45.0%
! TTGCTTGACGAAGGCTTTGA+AGG - chr4_1:75793448-75793467 None:intergenic 45.0%
GCAGCAAGAACAACAGAAAG+AGG + chr4_1:75793494-75793513 Msa0572840:CDS 45.0%
CATGGGAAAAGGGTTATTCC+TGG + chr4_1:75793696-75793715 Msa0572840:intron 45.0%
AGGAAGTTCTTTGCCATCCT+TGG - chr4_1:75793826-75793845 None:intergenic 45.0%
! GCCAAGGATAAGGGTTTGTT+TGG - chr4_1:75793949-75793968 None:intergenic 45.0%
AGGAGACATCTGATGGAAAC+TGG + chr4_1:75794270-75794289 Msa0572840:intron 45.0%
GCTATCAAGGGGTAAGAAAC+AGG + chr4_1:75794525-75794544 Msa0572840:intron 45.0%
TTGATAGGGACCGGTATTGT+GGG - chr4_1:75794583-75794602 None:intergenic 45.0%
GCTCAAGAGTCATGAGAAGA+AGG + chr4_1:75794734-75794753 Msa0572840:intron 45.0%
ATACAACCAACTCCGTGTAG+TGG + chr4_1:75795948-75795967 Msa0572840:intron 45.0%
TACAACCAACTCCGTGTAGT+GGG + chr4_1:75795949-75795968 Msa0572840:intron 45.0%
CTAAGCTTTCTCCCACTACA+CGG - chr4_1:75795963-75795982 None:intergenic 45.0%
TAAGTTTGACTCAGGAGCAG+TGG + chr4_1:75796084-75796103 Msa0572840:CDS 45.0%
ACGAGATGACTTCCATATGC+AGG + chr4_1:75796175-75796194 Msa0572840:three_prime_UTR 45.0%
! GTACCTCGACCATTTTGTTC+AGG + chr4_1:75796323-75796342 Msa0572840:three_prime_UTR 45.0%
AGTCCTGAACAAAATGGTCG+AGG - chr4_1:75796329-75796348 None:intergenic 45.0%
GCAGCTGGAGTAGAATTTGT+AGG + chr4_1:75796392-75796411 Msa0572840:three_prime_UTR 45.0%
ACCCCTTTCTCCGAAAGAAC+CGG + chr4_1:75793263-75793282 Msa0572840:five_prime_UTR 50.0%
! ACCGGTTCTTTCGGAGAAAG+GGG - chr4_1:75793267-75793286 None:intergenic 50.0%
!! CACCGGTTCTTTCGGAGAAA+GGG - chr4_1:75793268-75793287 None:intergenic 50.0%
!! TCACCGGTTCTTTCGGAGAA+AGG - chr4_1:75793269-75793288 None:intergenic 50.0%
TTTGACACAGCTGAGCTCAC+CGG - chr4_1:75793285-75793304 None:intergenic 50.0%
ATGGATGACGCCGAAACCAA+AGG + chr4_1:75793306-75793325 Msa0572840:CDS 50.0%
! CTTTGAAGGGAGGCTGAGAT+AGG - chr4_1:75793434-75793453 None:intergenic 50.0%
!! TTGACGAAGGCTTTGAAGGG+AGG - chr4_1:75793444-75793463 None:intergenic 50.0%
CTCGCAGATGACTAGATCAC+CGG - chr4_1:75793613-75793632 None:intergenic 50.0%
GGGAAGCTATGCAATTGGCA+GGG - chr4_1:75794420-75794439 None:intergenic 50.0%
AGGGAAGCTATGCAATTGGC+AGG - chr4_1:75794421-75794440 None:intergenic 50.0%
GGCACAACTATGACACAAGC+TGG + chr4_1:75794464-75794483 Msa0572840:intron 50.0%
TGATAGGGACCGGTATTGTG+GGG - chr4_1:75794582-75794601 None:intergenic 50.0%
! GTTGATAGGGACCGGTATTG+TGG - chr4_1:75794584-75794603 None:intergenic 50.0%
AGATGTCTCGGCGTTGCAAT+TGG + chr4_1:75795492-75795511 Msa0572840:intron 50.0%
TAGGTGGTCTGTGCATACAG+CGG + chr4_1:75795763-75795782 Msa0572840:intron 50.0%
! TTAGTCCACCGGTTGGAGTT+AGG + chr4_1:75795811-75795830 Msa0572840:intron 50.0%
GGTATCCACCTAACTCCAAC+CGG - chr4_1:75795822-75795841 None:intergenic 50.0%
TTTCTCCCACTACACGGAGT+TGG - chr4_1:75795957-75795976 None:intergenic 50.0%
AGTCTTCAGTGTAGTGCAGC+TGG + chr4_1:75796377-75796396 Msa0572840:three_prime_UTR 50.0%
!! GCTGAGCTCACCGGTTCTTT+CGG - chr4_1:75793276-75793295 None:intergenic 55.0%
CGGTGATCTAGTCATCTGCG+AGG + chr4_1:75793611-75793630 Msa0572840:CDS 55.0%
CTCTTTCGCACGCACTTCAC+CGG + chr4_1:75793655-75793674 Msa0572840:intron 55.0%
GGGACTTGACCCCACAATAC+CGG + chr4_1:75794570-75794589 Msa0572840:intron 55.0%
ATCCACCTAACTCCAACCGG+TGG - chr4_1:75795819-75795838 None:intergenic 55.0%
! GTCCACCGGTTGGAGTTAGG+TGG + chr4_1:75795814-75795833 Msa0572840:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 75793221 75796573 75793221 ID=Msa0572840;Name=Msa0572840
chr4_1 mRNA 75793221 75796573 75793221 ID=Msa0572840-mRNA-1;Parent=Msa0572840;Name=Msa0572840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=85|1|1|1|1|1|3|401|174
chr4_1 exon 75793221 75793632 75793221 ID=Msa0572840-mRNA-1:exon:26309;Parent=Msa0572840-mRNA-1
chr4_1 exon 75793750 75793855 75793750 ID=Msa0572840-mRNA-1:exon:26310;Parent=Msa0572840-mRNA-1
chr4_1 exon 75796081 75796573 75796081 ID=Msa0572840-mRNA-1:exon:26311;Parent=Msa0572840-mRNA-1
chr4_1 five_prime_UTR 75793221 75793305 75793221 ID=Msa0572840-mRNA-1:five_prime_utr;Parent=Msa0572840-mRNA-1
chr4_1 CDS 75793306 75793632 75793306 ID=Msa0572840-mRNA-1:cds;Parent=Msa0572840-mRNA-1
chr4_1 CDS 75793750 75793855 75793750 ID=Msa0572840-mRNA-1:cds;Parent=Msa0572840-mRNA-1
chr4_1 CDS 75796081 75796172 75796081 ID=Msa0572840-mRNA-1:cds;Parent=Msa0572840-mRNA-1
chr4_1 three_prime_UTR 75796173 75796573 75796173 ID=Msa0572840-mRNA-1:three_prime_utr;Parent=Msa0572840-mRNA-1
Gene Sequence

>Msa0572840

ATGGATGACGCCGAAACCAAAGGAAGAATCGAAGAAACAGTTTTGAAGATCCTTCAAGAATCAAACATGGACGACGTCACCGAATCCAAGATTCGAAAGCAAGCCTCAAATGAATTGGATCTTAACCTATCTCAGCCTCCCTTCAAAGCCTTCGTCAAGCAAATCATCGAAGCTTTTCTTATACAGAAGCAGCAAGAACAACAGAAAGAGGAAAAAGAAGAAGGCGAAGAAGAAGAAGAAGAAGAAGAGAAACAACAGGTTAAACAAGAGGGAGCTTCCAACAAAAGCACTGTTTATGATGATTCCGGTGATCTAGTCATCTGCGAGCTTGGAAAAAAGAGAAAGGTGACAATTCAGGATTTCAAAGGGAGAACATTTGTCTCCATTAGAGAGTTTTATACCAAGGATGGCAAAGAACTTCCTTCTTCTAAAGGAATAAGTTTGACTCAGGAGCAGTGGTTAGCCTTCAAGAAAATTGTGCCTGACATAGAACAAGCCATTCAGAAAAAGGAGTCACGTGTATAA

Protein sequence

>Msa0572840

MDDAETKGRIEETVLKILQESNMDDVTESKIRKQASNELDLNLSQPPFKAFVKQIIEAFLIQKQQEQQKEEKEEGEEEEEEEEKQQVKQEGASNKSTVYDDSGDLVICELGKKRKVTIQDFKGRTFVSIREFYTKDGKELPSSKGISLTQEQWLAFKKIVPDIEQAIQKKESRV*