AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041610 MtrunA17_Chr1g0207001 81.818 132 1 2 114 223 1 131 5.17e-69 207
Msa0041610 MtrunA17_Chr1g0207001 76.923 130 5 2 1 105 1 130 6.42e-62 189
Msa0041610 MtrunA17_Chr3g0079331 77.273 132 7 2 114 223 1 131 4.41e-64 195
Msa0041610 MtrunA17_Chr3g0079331 73.846 130 9 2 1 105 1 130 8.00e-58 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041610 AT1G49975.1 56.154 130 36 2 114 223 1 129 3.64e-41 137
Msa0041610 AT1G49975.1 53.125 128 37 2 1 105 1 128 1.05e-36 125

Find 60 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTACTTTCATGCATTCT+TGG 0.181339 1_1:+72038225 Msa0041610:three_prime_UTR
AATGTTAACATAATAGTATT+TGG 0.249897 1_1:-72038263 Msa0041620:intron
AGAAGCACGAACATGGAATT+TGG 0.263666 1_1:+72033336 Msa0041610:CDS
TCTATTGGGAAATTTGGATA+TGG 0.287896 1_1:+72037940 Msa0041610:three_prime_UTR
AGCACCACCAACATGGAATT+TGG 0.289275 1_1:+72037297 Msa0041610:CDS
TGGCTAAACCTAATCTCATT+TGG 0.341670 1_1:-72038060 Msa0041620:intron
GAAGAGGCGATGAGTTCTAT+AGG 0.348824 1_1:+72037174 Msa0041610:CDS
GATTACTTTGAGTTCGTAGA+AGG 0.353863 1_1:+72033851 Msa0041610:CDS
GATTACTTTGAGTTCGTAGA+AGG 0.353863 1_1:+72037807 Msa0041610:CDS
TATAGGGCAAACCATGTTAA+TGG 0.362210 1_1:+72037191 Msa0041610:CDS
TATACGGCAAACCATGTTAA+TGG 0.368666 1_1:+72033242 Msa0041610:CDS
CAGAAAAGGGTATCCTTGAT+TGG 0.408398 1_1:+72033912 Msa0041610:CDS
CAGAAAAGGGTATCCTTGAT+TGG 0.408398 1_1:+72037868 Msa0041610:CDS
TGCCTAGTAAGATATCTATA+TGG 0.409847 1_1:+72038033 Msa0041610:three_prime_UTR
ATGTTCGTGCTTCTCAAAGT+TGG 0.416669 1_1:-72033327 None:intergenic
GTTTGCAAGGAAAGGAGGAG+GGG 0.424219 1_1:+72037832 Msa0041610:CDS
ATGGTCATCCAAATGAGATT+AGG 0.424537 1_1:+72038052 Msa0041610:three_prime_UTR
TGTTCGTGCTTCTCAAAGTT+GGG 0.431311 1_1:-72033326 None:intergenic
GAAGCTTTCAGAAGCAGAAA+AGG 0.433331 1_1:+72033898 Msa0041610:CDS
GAAGCTTTCAGAAGCAGAAA+AGG 0.433331 1_1:+72037854 Msa0041610:CDS
GGGTTTGCAAGGAAAGGAGG+AGG 0.434142 1_1:+72037830 Msa0041610:CDS
CCTTCCAAATTCCATGTTGG+TGG 0.438290 1_1:-72037301 Msa0041620:three_prime_UTR
TTGGTGGTGCTTCTCAAAGT+TGG 0.441638 1_1:-72037285 Msa0041620:three_prime_UTR
GTTTGCAAGGAAAGGAAGAG+GGG 0.447267 1_1:+72033876 Msa0041610:CDS
TGGTGGTGCTTCTCAAAGTT+GGG 0.449042 1_1:-72037284 Msa0041620:three_prime_UTR
GGGTTTGCAAGGAAAGGAAG+AGG 0.455002 1_1:+72033874 Msa0041610:CDS
TGTTAGCTTTAAGCCAATCA+AGG 0.469309 1_1:-72033925 None:intergenic
TGTTAGCTTTAAGCCAATCA+AGG 0.469309 1_1:-72037881 Msa0041620:intron
AAGGGACGATGAGTTCTATA+CGG 0.476137 1_1:+72033226 None:intergenic
AAGAGGCGATGAGTTCTATA+GGG 0.479187 1_1:+72037175 Msa0041610:CDS
GGTTTGCAAGGAAAGGAAGA+GGG 0.496880 1_1:+72033875 Msa0041610:CDS
GGTTTGCAAGGAAAGGAGGA+GGG 0.503240 1_1:+72037831 Msa0041610:CDS
TTATTACAAGCGTAATTACA+AGG 0.507139 1_1:+72033829 Msa0041610:CDS
TTATTACAAGCGTAATTACA+AGG 0.507139 1_1:+72037785 Msa0041610:CDS
CATTGTCTTGAATATGACTC+TGG 0.524558 1_1:+72038153 Msa0041610:three_prime_UTR
TCTCCTTCCAAATTCCATGT+TGG 0.526459 1_1:-72037304 Msa0041620:three_prime_UTR
AACTTTGAGAAGCACGAACA+TGG 0.532220 1_1:+72033329 Msa0041610:CDS
GTTAATGGCACTAACAGTTA+CGG 0.549686 1_1:+72037206 Msa0041610:CDS
AACTGTTAGTGCCATTAACA+TGG 0.549756 1_1:-72037202 Msa0041620:three_prime_UTR
GTATGCATCATCCAATGTGC+AGG 0.549946 1_1:+72037236 Msa0041610:CDS
AACTGTTAGTGCCATTAACA+TGG 0.559692 1_1:-72033253 None:intergenic
TACTTTGAGTTCGTAGAAGG+GGG 0.574786 1_1:+72033854 Msa0041610:CDS
TACTTTGAGTTCGTAGAAGG+GGG 0.574786 1_1:+72037810 Msa0041610:CDS
AACATGGAATTTGGAAGGAG+AGG 0.586422 1_1:+72037306 Msa0041610:CDS
GACCATATAGATATCTTACT+AGG 0.587392 1_1:-72038035 Msa0041620:intron
ATTATGAACTGCCTGCACAT+TGG 0.588435 1_1:-72037247 Msa0041620:three_prime_UTR
ATTATGAACTGCTTGCACAT+TGG 0.592913 1_1:-72033289 None:intergenic
ATTACTTTGAGTTCGTAGAA+GGG 0.593520 1_1:+72033852 Msa0041610:CDS
ATTACTTTGAGTTCGTAGAA+GGG 0.593520 1_1:+72037808 Msa0041610:CDS
GCACGAACATGGAATTTGGA+AGG 0.597029 1_1:+72033340 Msa0041610:CDS
AAGCTTTCAGAAGCAGAAAA+GGG 0.600223 1_1:+72033899 Msa0041610:CDS
AAGCTTTCAGAAGCAGAAAA+GGG 0.600223 1_1:+72037855 Msa0041610:CDS
GAAGAAAACAGAGGAAAACA+AGG 0.601206 1_1:+72037655 Msa0041610:intron
TTACTTTGAGTTCGTAGAAG+GGG 0.603502 1_1:+72033853 Msa0041610:CDS
TTACTTTGAGTTCGTAGAAG+GGG 0.603502 1_1:+72037809 Msa0041610:CDS
AAATTTGTTAGATTACCGAA+TGG 0.606309 1_1:+72037993 Msa0041610:three_prime_UTR
CCACCAACATGGAATTTGGA+AGG 0.619705 1_1:+72037301 Msa0041610:CDS
GAAGAAAACAGATGAAAACA+AGG 0.626367 1_1:+72033686 Msa0041610:intron
TTTGAGAAGCACCACCAACA+TGG 0.627251 1_1:+72037290 Msa0041610:CDS
AGAATATTTGAAGAAAACAG+AGG 0.670181 1_1:+72037646 Msa0041610:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATTACTATTTACAT+GGG - chr1_1:72036312-72036331 None:intergenic 10.0%
!! AAAAAAAAAAAAAACATTTG+AGG + chr1_1:72036874-72036893 Msa0041610:intron 10.0%
!!! TGTAAATTTTGATTTTCTAT+TGG + chr1_1:72034007-72034026 Msa0041610:intron 15.0%
!!! GTAAATTTTGATTTTCTATT+GGG + chr1_1:72034008-72034027 Msa0041610:intron 15.0%
!!! ATAAGTTTTTTTTGAAAAAG+AGG - chr1_1:72034963-72034982 None:intergenic 15.0%
!!! AATAAGCTTTTTTTTAAAAG+AGG + chr1_1:72035841-72035860 Msa0041610:intron 15.0%
!! AAAGTTAAAAAAATAACTTC+CGG + chr1_1:72036204-72036223 Msa0041610:intron 15.0%
!!! CAATTTTATTACTATTTACA+TGG - chr1_1:72036313-72036332 None:intergenic 15.0%
!!! TATTTTTGAAAAATTGTGTT+TGG - chr1_1:72036395-72036414 None:intergenic 15.0%
!!! AAAGACAAATATTGTTTTAA+GGG - chr1_1:72036501-72036520 None:intergenic 15.0%
!!! AAAAGACAAATATTGTTTTA+AGG - chr1_1:72036502-72036521 None:intergenic 15.0%
!!! AGTTTTTATTTTCTAATAGA+TGG + chr1_1:72036817-72036836 Msa0041610:intron 15.0%
!!! TGTAAATTTTGATTTTCTAT+TGG + chr1_1:72034007-72034026 Msa0041610:intron 15.0%
!!! GTAAATTTTGATTTTCTATT+GGG + chr1_1:72034008-72034027 Msa0041610:intron 15.0%
!! TTAAAAAAAGATGATGTATA+TGG + chr1_1:72038197-72038216 Msa0041610:three_prime_UTR 15.0%
!! AATGTTAACATAATAGTATT+TGG - chr1_1:72038266-72038285 Msa0041620:intron 15.0%
!! GAATATAATCAATTGTAACT+TGG - chr1_1:72033531-72033550 None:intergenic 20.0%
!! AAAATCAAAATTTACAAGCT+AGG - chr1_1:72034003-72034022 None:intergenic 20.0%
!!! ATCTTTTTTTAGTTTCTCAT+AGG - chr1_1:72034278-72034297 None:intergenic 20.0%
!! CTAAAAAAAGATGATGTATA+TGG + chr1_1:72034286-72034305 Msa0041610:intron 20.0%
!!! CATAATATTTGACTTTTAGA+TGG - chr1_1:72034344-72034363 None:intergenic 20.0%
!!! ATTGATTTTAAGAGGAAAAA+CGG - chr1_1:72034603-72034622 None:intergenic 20.0%
!!! TACAATGTATTGATTTTAAG+AGG - chr1_1:72034611-72034630 None:intergenic 20.0%
!!! AAGTTGTTTTGATAAATAAG+TGG - chr1_1:72034766-72034785 None:intergenic 20.0%
!!! ATAAGCTATTTTTGAAAAAG+AGG - chr1_1:72034903-72034922 None:intergenic 20.0%
!!! ATAAATAAGCTGTTTCAATA+AGG - chr1_1:72035388-72035407 None:intergenic 20.0%
!!! ATAAGTTGTTTTTTGAAAAG+AGG + chr1_1:72035901-72035920 Msa0041610:intron 20.0%
!!! ATAAGCTGTTTTTTAAAAAG+AGG + chr1_1:72035943-72035962 Msa0041610:intron 20.0%
!!! TAAGTTGTTTTTGAAAAAAG+AGG + chr1_1:72036046-72036065 Msa0041610:intron 20.0%
!!! AATAAGCTTTAAAAACACTT+AGG + chr1_1:72036105-72036124 Msa0041610:intron 20.0%
!!! TGGGAATAATTTTTTAAATC+AGG - chr1_1:72036143-72036162 None:intergenic 20.0%
!! TGATTTAAAAAATTATTCCC+AGG + chr1_1:72036142-72036161 Msa0041610:intron 20.0%
!! AAGTTAAAAAAATAACTTCC+GGG + chr1_1:72036205-72036224 Msa0041610:intron 20.0%
!! CAAATAATTGTCATATTCAT+GGG - chr1_1:72036372-72036391 None:intergenic 20.0%
!!! AAGACAAATATTGTTTTAAG+GGG - chr1_1:72036500-72036519 None:intergenic 20.0%
!! AAAAAAAAAAACATTTGAGG+TGG + chr1_1:72036877-72036896 Msa0041610:intron 20.0%
!! CATATGTATGTATGAATATA+AGG - chr1_1:72037084-72037103 None:intergenic 20.0%
!!! TCTTTTTTTAAGTTTCTCAT+AGG - chr1_1:72038188-72038207 Msa0041620:intron 20.0%
! TTATTACAAGCGTAATTACA+AGG + chr1_1:72033829-72033848 Msa0041610:CDS 25.0%
!! TGATTTTCTATTGGGAAATT+TGG + chr1_1:72034016-72034035 Msa0041610:intron 25.0%
! AAGATATCTAGATCACTATA+TGG + chr1_1:72034123-72034142 Msa0041610:intron 25.0%
!! AAATGGTAGATCTCATTTTA+TGG - chr1_1:72034404-72034423 None:intergenic 25.0%
! TTTCTTTAACTCCCAAATAA+GGG - chr1_1:72034530-72034549 None:intergenic 25.0%
!!! TTGATTTTAAGAGGAAAAAC+GGG - chr1_1:72034602-72034621 None:intergenic 25.0%
!!! ACAACCTCTTTTTCAAAAAA+CGG + chr1_1:72035016-72035035 Msa0041610:intron 25.0%
!!! ATAAGCTGTTTTTGAAAAAG+AGG - chr1_1:72035626-72035645 None:intergenic 25.0%
!!! TAAGCTGTTTTTTGAAAAAG+AGG + chr1_1:72035445-72035464 Msa0041610:intron 25.0%
!!! ATAAGCTGTTTTTAGAAAAG+AGG + chr1_1:72035566-72035585 Msa0041610:intron 25.0%
! TTACACAAAACAACTTACTA+CGG - chr1_1:72035592-72035611 None:intergenic 25.0%
!!! ATAAGCTGTTTTTTGAAAAG+AGG + chr1_1:72035732-72035751 Msa0041610:intron 25.0%
!!! ATAAGCTGTTTTTGAAAAAG+AGG + chr1_1:72035626-72035645 Msa0041610:intron 25.0%
!! TTCTTTGGGAATAAAATCAT+GGG - chr1_1:72036268-72036287 None:intergenic 25.0%
!! TTTCTTTGGGAATAAAATCA+TGG - chr1_1:72036269-72036288 None:intergenic 25.0%
! GCAAATAATTGTCATATTCA+TGG - chr1_1:72036373-72036392 None:intergenic 25.0%
!!! ACAATTTTTCAAAAATACCC+AGG + chr1_1:72036398-72036417 Msa0041610:intron 25.0%
!!! AGACAAATATTGTTTTAAGG+GGG - chr1_1:72036499-72036518 None:intergenic 25.0%
! TTTGACTAAAACTCGATAAA+AGG - chr1_1:72036726-72036745 None:intergenic 25.0%
!! TTTGAGGTGGAAATTAAATT+AGG + chr1_1:72036890-72036909 Msa0041610:intron 25.0%
! TTGAGGTGGAAATTAAATTA+GGG + chr1_1:72036891-72036910 Msa0041610:intron 25.0%
! CAAATTGTAAAAGAAGAATG+TGG + chr1_1:72036989-72037008 Msa0041610:intron 25.0%
! GCTTAATAAACTTATCCTAA+AGG - chr1_1:72037142-72037161 Msa0041620:three_prime_UTR 25.0%
! AGAATATTTGAAGAAAACAG+AGG + chr1_1:72033677-72033696 Msa0041610:intron 25.0%
! TTATTACAAGCGTAATTACA+AGG + chr1_1:72033829-72033848 Msa0041610:CDS 25.0%
!! TGATTTTCTATTGGGAAATT+TGG + chr1_1:72034016-72034035 Msa0041610:intron 25.0%
!!! AAATTTGTTAGATTACCGAA+TGG + chr1_1:72037993-72038012 Msa0041610:three_prime_UTR 25.0%
!! AATTATCTCTGTTTTCCATT+CGG - chr1_1:72038011-72038030 Msa0041620:intron 25.0%
GAAGAAAACAGATGAAAACA+AGG + chr1_1:72033686-72033705 Msa0041610:intron 30.0%
! TTAATCACAGTTTTTGTGTG+TGG + chr1_1:72033792-72033811 Msa0041610:intron 30.0%
! ATTACTTTGAGTTCGTAGAA+GGG + chr1_1:72033852-72033871 Msa0041610:CDS 30.0%
ATCAAAATTTACAAGCTAGG+TGG - chr1_1:72034000-72034019 None:intergenic 30.0%
TCTATTGGGAAATTTGGATA+TGG + chr1_1:72034022-72034041 Msa0041610:intron 30.0%
TAGATTACCGAATAGAAAAG+AGG + chr1_1:72034083-72034102 Msa0041610:intron 30.0%
AGATTACCGAATAGAAAAGA+GGG + chr1_1:72034084-72034103 Msa0041610:intron 30.0%
! AACTATCCCTCTTTTCTATT+CGG - chr1_1:72034093-72034112 None:intergenic 30.0%
CTATTACTTTCATGCATTCT+TGG + chr1_1:72034314-72034333 Msa0041610:intron 30.0%
TATGTTAACATTGATGTCAC+TGG + chr1_1:72034360-72034379 Msa0041610:intron 30.0%
ACAAAGTCTAAGTGACAAAA+TGG - chr1_1:72034421-72034440 None:intergenic 30.0%
TTCTTTAACTCCCAAATAAG+GGG - chr1_1:72034529-72034548 None:intergenic 30.0%
GTTTCTTTAACTCCCAAATA+AGG - chr1_1:72034531-72034550 None:intergenic 30.0%
TTAAAGAAACCAACAAGGAA+AGG + chr1_1:72034541-72034560 Msa0041610:intron 30.0%
!!! TAAGCCGTTTTTTGAAAAAG+AGG - chr1_1:72035023-72035042 None:intergenic 30.0%
GAGATCTTAATAAGCTGTTA+TGG - chr1_1:72035172-72035191 None:intergenic 30.0%
!!! ATAAGCCGTTTTTGAAAAAG+AGG + chr1_1:72035505-72035524 Msa0041610:intron 30.0%
!!! TACGACCTCTTTTTCAAAAA+CGG - chr1_1:72034895-72034914 None:intergenic 30.0%
!! AAGCTTTAAAAACACTTAGG+AGG + chr1_1:72036108-72036127 Msa0041610:intron 30.0%
!!! GTGGAAGTTATTTTTTTCCT+AGG - chr1_1:72036242-72036261 None:intergenic 30.0%
! GATTTTATTCCCAAAGAAAG+TGG + chr1_1:72036270-72036289 Msa0041610:intron 30.0%
AAAAATACCCAGGAATAAGA+TGG + chr1_1:72036408-72036427 Msa0041610:intron 30.0%
! CGGTTTAAAATTTCATTCCT+GGG - chr1_1:72036465-72036484 None:intergenic 30.0%
! ACGGTTTAAAATTTCATTCC+TGG - chr1_1:72036466-72036485 None:intergenic 30.0%
TTTGAAAGATTTCGTGTCTT+TGG + chr1_1:72036756-72036775 Msa0041610:intron 30.0%
AAGCAAACTAAAAAGAGAAG+AGG + chr1_1:72037158-72037177 Msa0041610:intron 30.0%
AAAATGACAAAGAGGTAAGT+AGG + chr1_1:72033712-72033731 Msa0041610:intron 30.0%
AAATGACAAAGAGGTAAGTA+GGG + chr1_1:72037682-72037701 Msa0041610:intron 30.0%
! TTAATCACAGTTTTTGTGTG+TGG + chr1_1:72033792-72033811 Msa0041610:intron 30.0%
! ATTACTTTGAGTTCGTAGAA+GGG + chr1_1:72033852-72033871 Msa0041610:CDS 30.0%
TCTATTGGGAAATTTGGATA+TGG + chr1_1:72034022-72034041 Msa0041610:intron 30.0%
TGCCTAGTAAGATATCTATA+TGG + chr1_1:72038033-72038052 Msa0041610:three_prime_UTR 30.0%
GACCATATAGATATCTTACT+AGG - chr1_1:72038038-72038057 Msa0041620:intron 30.0%
! CTTCACAAGTCTAACATTTT+TGG - chr1_1:72038083-72038102 Msa0041620:intron 30.0%
CTATTACTTTCATGCATTCT+TGG + chr1_1:72034314-72034333 Msa0041610:intron 30.0%
TATACGGCAAACCATGTTAA+TGG + chr1_1:72033242-72033261 Msa0041610:CDS 35.0%
! AACTGTTAGTGCCATTAACA+TGG - chr1_1:72033256-72033275 None:intergenic 35.0%
ATTATGAACTGCTTGCACAT+TGG - chr1_1:72033292-72033311 None:intergenic 35.0%
AAGGTCATTGCTTCTTCAAA+GGG + chr1_1:72033426-72033445 Msa0041610:intron 35.0%
! AGAAGTGATGATGCTACATA+AGG - chr1_1:72033487-72033506 None:intergenic 35.0%
CCACTAAAAACATGTTCAAG+TGG - chr1_1:72033614-72033633 None:intergenic 35.0%
!!! CCACTTGAACATGTTTTTAG+TGG + chr1_1:72033611-72033630 Msa0041610:intron 35.0%
CAAGGAGAAAAATGACAAAG+AGG + chr1_1:72033704-72033723 Msa0041610:CDS 35.0%
! GATTACTTTGAGTTCGTAGA+AGG + chr1_1:72033851-72033870 Msa0041610:CDS 35.0%
! TTACTTTGAGTTCGTAGAAG+GGG + chr1_1:72033853-72033872 Msa0041610:CDS 35.0%
AAGCTTTCAGAAGCAGAAAA+GGG + chr1_1:72033899-72033918 Msa0041610:CDS 35.0%
!! TGTTAGCTTTAAGCCAATCA+AGG - chr1_1:72033928-72033947 None:intergenic 35.0%
AGTGATCTAGATATCTTACC+AGG - chr1_1:72034120-72034139 None:intergenic 35.0%
TCGCTAAAACTAATCTCCTT+TGG - chr1_1:72034153-72034172 None:intergenic 35.0%
CATTGTCTCGAATATGACTA+TGG + chr1_1:72034243-72034262 Msa0041610:intron 35.0%
!! ACTTTGTTTGCGAGTTTTGA+GGG + chr1_1:72034434-72034453 Msa0041610:intron 35.0%
! GGAAAACATTCCCCTTATTT+GGG + chr1_1:72034516-72034535 Msa0041610:intron 35.0%
! GAGATCGTAATAAGCTGTTT+TGG - chr1_1:72035065-72035084 None:intergenic 35.0%
! GAGATCGTAATAAGCTGTTT+TGG - chr1_1:72035065-72035084 None:intergenic 35.0%
! ACAAGCTGTTATCTGAAATG+AGG + chr1_1:72035686-72035705 Msa0041610:intron 35.0%
AATTATTCCCAGGAATGTAG+AGG + chr1_1:72036152-72036171 Msa0041610:intron 35.0%
TCCTAGGAATTCTTTATTCC+CGG - chr1_1:72036226-72036245 None:intergenic 35.0%
GGAATAAAATCATGGGTAAG+TGG - chr1_1:72036261-72036280 None:intergenic 35.0%
! TATTCCTAGCCACTTTCTTT+GGG - chr1_1:72036282-72036301 None:intergenic 35.0%
! TTATTCCTAGCCACTTTCTT+TGG - chr1_1:72036283-72036302 None:intergenic 35.0%
!! GTTTGTGATAGTGGGTATAT+GGG - chr1_1:72036345-72036364 None:intergenic 35.0%
!! TGTTTGTGATAGTGGGTATA+TGG - chr1_1:72036346-72036365 None:intergenic 35.0%
TGGGAATTGTTTGTGATAGT+GGG - chr1_1:72036353-72036372 None:intergenic 35.0%
ATGGGAATTGTTTGTGATAG+TGG - chr1_1:72036354-72036373 None:intergenic 35.0%
ATAATGGCCATCTTATTCCT+GGG - chr1_1:72036418-72036437 None:intergenic 35.0%
AATAATGGCCATCTTATTCC+TGG - chr1_1:72036419-72036438 None:intergenic 35.0%
TTCCTCCTGGGAAATAATAA+TGG - chr1_1:72036434-72036453 None:intergenic 35.0%
TTATTATTTCCCAGGAGGAA+AGG + chr1_1:72036434-72036453 Msa0041610:intron 35.0%
AGCTAAGCTCAACGATAAAA+AGG - chr1_1:72036695-72036714 None:intergenic 35.0%
TTCGTGTCTTTGGTAAACTA+AGG + chr1_1:72036766-72036785 Msa0041610:intron 35.0%
TACTCTTGTAGTGACATTTG+AGG + chr1_1:72036842-72036861 Msa0041610:intron 35.0%
CATATGAAGCACAATGTAGT+AGG + chr1_1:72037098-72037117 Msa0041610:intron 35.0%
CCTAAAGGATAATGAACATG+TGG - chr1_1:72037127-72037146 None:intergenic 35.0%
CCACATGTTCATTATCCTTT+AGG + chr1_1:72037124-72037143 Msa0041610:intron 35.0%
TATAGGGCAAACCATGTTAA+TGG + chr1_1:72037191-72037210 Msa0041610:CDS 35.0%
! AACTGTTAGTGCCATTAACA+TGG - chr1_1:72033256-72033275 None:intergenic 35.0%
GTTAATGGCACTAACAGTTA+CGG + chr1_1:72033257-72033276 Msa0041610:CDS 35.0%
TAATCAAATGTGACTGTGTC+AGG - chr1_1:72037506-72037525 Msa0041620:intron 35.0%
!!! CGACATGAACATGTTTTTAG+TGG + chr1_1:72037579-72037598 Msa0041610:intron 35.0%
GAAGAAAACAGAGGAAAACA+AGG + chr1_1:72037655-72037674 Msa0041610:intron 35.0%
CAAGGAGAAAAATGACAAAG+AGG + chr1_1:72033704-72033723 Msa0041610:CDS 35.0%
AATGACAAAGAGGTAAGTAG+GGG + chr1_1:72037683-72037702 Msa0041610:intron 35.0%
! GATTACTTTGAGTTCGTAGA+AGG + chr1_1:72033851-72033870 Msa0041610:CDS 35.0%
! TTACTTTGAGTTCGTAGAAG+GGG + chr1_1:72033853-72033872 Msa0041610:CDS 35.0%
AAGCTTTCAGAAGCAGAAAA+GGG + chr1_1:72033899-72033918 Msa0041610:CDS 35.0%
!! TGTTAGCTTTAAGCCAATCA+AGG - chr1_1:72033928-72033947 None:intergenic 35.0%
ATGGTCATCCAAATGAGATT+AGG + chr1_1:72038052-72038071 Msa0041610:three_prime_UTR 35.0%
TGGCTAAACCTAATCTCATT+TGG - chr1_1:72038063-72038082 Msa0041620:intron 35.0%
CATTGTCTTGAATATGACTC+TGG + chr1_1:72038153-72038172 Msa0041610:three_prime_UTR 35.0%
TGTTCGTGCTTCTCAAAGTT+GGG - chr1_1:72033329-72033348 None:intergenic 40.0%
ATGTTCGTGCTTCTCAAAGT+TGG - chr1_1:72033330-72033349 None:intergenic 40.0%
! AACTTTGAGAAGCACGAACA+TGG + chr1_1:72033329-72033348 Msa0041610:CDS 40.0%
! AGAAGCACGAACATGGAATT+TGG + chr1_1:72033336-72033355 Msa0041610:CDS 40.0%
! TAACTCTTAAGTTGCGGTTG+CGG - chr1_1:72033394-72033413 None:intergenic 40.0%
! GGGTCTTAACTCTTAAGTTG+CGG - chr1_1:72033400-72033419 None:intergenic 40.0%
CAAGGTCATTGCTTCTTCAA+AGG + chr1_1:72033425-72033444 Msa0041610:intron 40.0%
CTTCTGAATGTATGTGTGTC+TGG + chr1_1:72033502-72033521 Msa0041610:intron 40.0%
! TACTTTGAGTTCGTAGAAGG+GGG + chr1_1:72033854-72033873 Msa0041610:CDS 40.0%
GAAGCTTTCAGAAGCAGAAA+AGG + chr1_1:72033898-72033917 Msa0041610:CDS 40.0%
!! CAGAAAAGGGTATCCTTGAT+TGG + chr1_1:72033912-72033931 Msa0041610:CDS 40.0%
! AAAGAGGGATAGTTTTTGCC+TGG + chr1_1:72034099-72034118 Msa0041610:intron 40.0%
ATCACTATATGGTCGACCAA+AGG + chr1_1:72034134-72034153 Msa0041610:intron 40.0%
!! GACTTTGTTTGCGAGTTTTG+AGG + chr1_1:72034433-72034452 Msa0041610:intron 40.0%
!!! CTTTGTTTGCGAGTTTTGAG+GGG + chr1_1:72034435-72034454 Msa0041610:intron 40.0%
TTTGAGGGGAATGAAAGGAA+AGG + chr1_1:72034449-72034468 Msa0041610:intron 40.0%
GGGAATGAAAGGAAAGGATA+AGG + chr1_1:72034455-72034474 Msa0041610:intron 40.0%
TGAAAGGAAAGGATAAGGAG+AGG + chr1_1:72034460-72034479 Msa0041610:intron 40.0%
GGGAAAACATTCCCCTTATT+TGG + chr1_1:72034515-72034534 Msa0041610:intron 40.0%
GGGAGTTAAAGAAACCAACA+AGG + chr1_1:72034536-72034555 Msa0041610:intron 40.0%
CAACAAGGAAAGGAGATAGA+GGG + chr1_1:72034551-72034570 Msa0041610:intron 40.0%
! GAGGTCGTAATAAGCTGTTT+TGG - chr1_1:72035464-72035483 None:intergenic 40.0%
! GAGGTTGTGATAAGCTGTTT+TGG - chr1_1:72035004-72035023 None:intergenic 40.0%
! GAGGTCGTAATAAGCTGTTT+TGG - chr1_1:72035464-72035483 None:intergenic 40.0%
! GAGGTCGTAATAAGCTGTTT+TGG + chr1_1:72035464-72035483 Msa0041610:intron 40.0%
ATTCCAACCTCTACATTCCT+GGG - chr1_1:72036162-72036181 None:intergenic 40.0%
AATTCCAACCTCTACATTCC+TGG - chr1_1:72036163-72036182 None:intergenic 40.0%
TCCGGGAATAAAGAATTCCT+AGG + chr1_1:72036222-72036241 Msa0041610:intron 40.0%
TATTCCCAAAGAAAGTGGCT+AGG + chr1_1:72036275-72036294 Msa0041610:intron 40.0%
GATGGCCATTATTATTTCCC+AGG + chr1_1:72036426-72036445 Msa0041610:intron 40.0%
!! TTAAGGGGGTGTTTGTTTGA+CGG - chr1_1:72036485-72036504 None:intergenic 40.0%
AAGAGGCGATGAGTTCTATA+GGG + chr1_1:72037175-72037194 Msa0041610:CDS 40.0%
ATTATGAACTGCCTGCACAT+TGG - chr1_1:72037250-72037269 Msa0041620:three_prime_UTR 40.0%
TCTCCTTCCAAATTCCATGT+TGG - chr1_1:72033346-72033365 None:intergenic 40.0%
AACATGGAATTTGGAAGGAG+AGG + chr1_1:72033345-72033364 Msa0041610:CDS 40.0%
! AGAAGTGATGACGCTACATA+GGG - chr1_1:72037449-72037468 Msa0041620:three_prime_UTR 40.0%
CTGAATATATGCGTGACTTC+TGG + chr1_1:72037467-72037486 Msa0041610:intron 40.0%
! TACTTTGAGTTCGTAGAAGG+GGG + chr1_1:72033854-72033873 Msa0041610:CDS 40.0%
GAAGCTTTCAGAAGCAGAAA+AGG + chr1_1:72033898-72033917 Msa0041610:CDS 40.0%
!! CAGAAAAGGGTATCCTTGAT+TGG + chr1_1:72033912-72033931 Msa0041610:CDS 40.0%
GCACGAACATGGAATTTGGA+AGG + chr1_1:72033340-72033359 Msa0041610:CDS 45.0%
AGAGTTAAGACCCTGAGTCA+AGG + chr1_1:72033407-72033426 Msa0041610:intron 45.0%
GAAGCAATGACCTTGACTCA+GGG - chr1_1:72033420-72033439 None:intergenic 45.0%
AGAAGCAATGACCTTGACTC+AGG - chr1_1:72033421-72033440 None:intergenic 45.0%
GTAAGTGACGCTCTCAAAGT+GGG + chr1_1:72033726-72033745 Msa0041610:intron 45.0%
TAAGTGACGCTCTCAAAGTG+GGG + chr1_1:72033727-72033746 Msa0041610:intron 45.0%
! ACAGTTTTTGTGTGTGGCAG+AGG + chr1_1:72033798-72033817 Msa0041610:intron 45.0%
! CAGTTTTTGTGTGTGGCAGA+GGG + chr1_1:72033799-72033818 Msa0041610:intron 45.0%
GGTTTGCAAGGAAAGGAAGA+GGG + chr1_1:72033875-72033894 Msa0041610:CDS 45.0%
GTTTGCAAGGAAAGGAAGAG+GGG + chr1_1:72033876-72033895 Msa0041610:CDS 45.0%
!!! CGAGTTTTGAGGGGAATGAA+AGG + chr1_1:72034444-72034463 Msa0041610:intron 45.0%
AGGAAAGGATAAGGAGAGGA+AGG + chr1_1:72034464-72034483 Msa0041610:intron 45.0%
GGAAAGGATAAGGAGAGGAA+GGG + chr1_1:72034465-72034484 Msa0041610:intron 45.0%
CCTCTATCTCCTTTCCTTGT+TGG - chr1_1:72034553-72034572 None:intergenic 45.0%
CCAACAAGGAAAGGAGATAG+AGG + chr1_1:72034550-72034569 Msa0041610:intron 45.0%
ATTCCCAGGAATGTAGAGGT+TGG + chr1_1:72036156-72036175 Msa0041610:intron 45.0%
GGCCATTATTATTTCCCAGG+AGG + chr1_1:72036429-72036448 Msa0041610:intron 45.0%
TGGGAATAACCTTTCCTCCT+GGG - chr1_1:72036446-72036465 None:intergenic 45.0%
GAAGAGGCGATGAGTTCTAT+AGG + chr1_1:72037174-72037193 Msa0041610:CDS 45.0%
GTATGCATCATCCAATGTGC+AGG + chr1_1:72033278-72033297 Msa0041610:CDS 45.0%
! TGGTGGTGCTTCTCAAAGTT+GGG - chr1_1:72037287-72037306 Msa0041620:three_prime_UTR 45.0%
!! TTGGTGGTGCTTCTCAAAGT+TGG - chr1_1:72037288-72037307 Msa0041620:three_prime_UTR 45.0%
!! TTTGAGAAGCACCACCAACA+TGG + chr1_1:72037290-72037309 Msa0041610:CDS 45.0%
AGCACCACCAACATGGAATT+TGG + chr1_1:72037297-72037316 Msa0041610:CDS 45.0%
CCTTCCAAATTCCATGTTGG+TGG - chr1_1:72037304-72037323 Msa0041620:three_prime_UTR 45.0%
CCACCAACATGGAATTTGGA+AGG + chr1_1:72037301-72037320 Msa0041610:CDS 45.0%
GAAGCAATGTCCTTGACTCA+GGG - chr1_1:72037380-72037399 Msa0041620:three_prime_UTR 45.0%
AGAAGCAATGTCCTTGACTC+AGG - chr1_1:72037381-72037400 Msa0041620:three_prime_UTR 45.0%
! CAGAAGTGATGACGCTACAT+AGG - chr1_1:72037450-72037469 Msa0041620:three_prime_UTR 45.0%
TGACTGTGTCAGGTCAATGT+CGG - chr1_1:72037496-72037515 Msa0041620:intron 45.0%
! ACAGTTTTTGTGTGTGGCAG+AGG + chr1_1:72033798-72033817 Msa0041610:intron 45.0%
! CAGTTTTTGTGTGTGGCAGA+GGG + chr1_1:72033799-72033818 Msa0041610:intron 45.0%
!!! TTTTTTTTTTAAATCTTAAA+TGG - chr1_1:72036955-72036974 None:intergenic 5.0%
AAGACCTAGCGAGACAGACA+CGG - chr1_1:72033590-72033609 None:intergenic 50.0%
GGTAAGTGACGCTCTCAAAG+TGG + chr1_1:72033725-72033744 Msa0041610:intron 50.0%
TTCGTAGAAGGGGGTTTGCA+AGG + chr1_1:72033863-72033882 Msa0041610:CDS 50.0%
AGAAGGGGGTTTGCAAGGAA+AGG + chr1_1:72033868-72033887 Msa0041610:CDS 50.0%
GGGTTTGCAAGGAAAGGAAG+AGG + chr1_1:72033874-72033893 Msa0041610:CDS 50.0%
ACTGGCACATGAGACTAGCA+TGG + chr1_1:72034378-72034397 Msa0041610:intron 50.0%
AGGATAAGGAGAGGAAGGGA+AGG + chr1_1:72034469-72034488 Msa0041610:intron 50.0%
AAGGAGAGGAAGGGAAGGAA+AGG + chr1_1:72034474-72034493 Msa0041610:intron 50.0%
AGGAGAGGAAGGGAAGGAAA+GGG + chr1_1:72034475-72034494 Msa0041610:intron 50.0%
GAAAGGGAGGGAAAGGAGAA+AGG + chr1_1:72034491-72034510 Msa0041610:intron 50.0%
GAAAGGAGATAGAGGGCTTG+TGG + chr1_1:72034558-72034577 Msa0041610:intron 50.0%
CTGGGAATAACCTTTCCTCC+TGG - chr1_1:72036447-72036466 None:intergenic 50.0%
CAGGAGGAAAGGTTATTCCC+AGG + chr1_1:72036445-72036464 Msa0041610:intron 50.0%
TCAGCGTCGTGTTCTCTCAT+AGG + chr1_1:72037551-72037570 Msa0041610:intron 50.0%
TTCGTAGAAGGGGGTTTGCA+AGG + chr1_1:72033863-72033882 Msa0041610:CDS 50.0%
AGAAGGGGGTTTGCAAGGAA+AGG + chr1_1:72033868-72033887 Msa0041610:CDS 50.0%
GGTTTGCAAGGAAAGGAGGA+GGG + chr1_1:72037831-72037850 Msa0041610:CDS 50.0%
GTTTGCAAGGAAAGGAGGAG+GGG + chr1_1:72037832-72037851 Msa0041610:CDS 50.0%
AGAGGAAGGGAAGGAAAGGG+AGG + chr1_1:72034478-72034497 Msa0041610:intron 55.0%
GAGGAAGGGAAGGAAAGGGA+GGG + chr1_1:72034479-72034498 Msa0041610:intron 55.0%
AGGGAAGGAAAGGGAGGGAA+AGG + chr1_1:72034484-72034503 Msa0041610:intron 55.0%
AGGGAGGGAAAGGAGAAAGG+AGG + chr1_1:72034494-72034513 Msa0041610:intron 55.0%
GGGAGGGAAAGGAGAAAGGA+GGG + chr1_1:72034495-72034514 Msa0041610:intron 55.0%
TGTGGTTGCGGCGATAACAG+TGG - chr1_1:72037343-72037362 Msa0041620:three_prime_UTR 55.0%
TTGCGTTGCGGTTGTGGTTG+CGG - chr1_1:72037355-72037374 Msa0041620:three_prime_UTR 55.0%
TGACTCAGGGTCTTGCGTTG+CGG - chr1_1:72037367-72037386 Msa0041620:three_prime_UTR 55.0%
CAACGCAAGACCCTGAGTCA+AGG + chr1_1:72037367-72037386 Msa0041610:intron 55.0%
AGGGGGTTTGCAAGGAAAGG+AGG + chr1_1:72033871-72033890 Msa0041610:CDS 55.0%
GGGTTTGCAAGGAAAGGAGG+AGG + chr1_1:72037830-72037849 Msa0041610:CDS 55.0%
TGCGGTTGCGGCGATAACAG+CGG - chr1_1:72033382-72033401 None:intergenic 60.0%
AGTGCCGTGTCTGTCTCGCT+AGG + chr1_1:72033583-72033602 Msa0041610:intron 60.0%
AGGGTCTTGCGTTGCGGTTG+TGG - chr1_1:72037361-72037380 Msa0041620:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 72033234 72038286 72033234 ID=Msa0041610;Name=Msa0041610
chr1_1 mRNA 72033234 72038286 72033234 ID=Msa0041610-mRNA-1;Parent=Msa0041610;Name=Msa0041610-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.4|0|1|0.6|0.5|6|378|223
chr1_1 exon 72033234 72033383 72033234 ID=Msa0041610-mRNA-1:exon:23914;Parent=Msa0041610-mRNA-1
chr1_1 exon 72033690 72033725 72033690 ID=Msa0041610-mRNA-1:exon:23915;Parent=Msa0041610-mRNA-1
chr1_1 exon 72033818 72033948 72033818 ID=Msa0041610-mRNA-1:exon:23916;Parent=Msa0041610-mRNA-1
chr1_1 exon 72037161 72037344 72037161 ID=Msa0041610-mRNA-1:exon:23917;Parent=Msa0041610-mRNA-1
chr1_1 exon 72037659 72037694 72037659 ID=Msa0041610-mRNA-1:exon:23918;Parent=Msa0041610-mRNA-1
chr1_1 exon 72037774 72038286 72037774 ID=Msa0041610-mRNA-1:exon:23919;Parent=Msa0041610-mRNA-1
chr1_1 CDS 72033234 72033383 72033234 ID=Msa0041610-mRNA-1:cds;Parent=Msa0041610-mRNA-1
chr1_1 CDS 72033690 72033725 72033690 ID=Msa0041610-mRNA-1:cds;Parent=Msa0041610-mRNA-1
chr1_1 CDS 72033818 72033948 72033818 ID=Msa0041610-mRNA-1:cds;Parent=Msa0041610-mRNA-1
chr1_1 CDS 72037161 72037344 72037161 ID=Msa0041610-mRNA-1:cds;Parent=Msa0041610-mRNA-1
chr1_1 CDS 72037659 72037694 72037659 ID=Msa0041610-mRNA-1:cds;Parent=Msa0041610-mRNA-1
chr1_1 CDS 72037774 72037908 72037774 ID=Msa0041610-mRNA-1:cds;Parent=Msa0041610-mRNA-1
chr1_1 three_prime_UTR 72037909 72038286 72037909 ID=Msa0041610-mRNA-1:three_prime_utr;Parent=Msa0041610-mRNA-1
Gene Sequence

>Msa0041610

ATGAGTTCTATACGGCAAACCATGTTAATGGCACTAACAGTTAAGTATGCATCATCCAATGTGCAAGCAGTTCATAATAGAAAACAAGCAAACCCAACTTTGAGAAGCACGAACATGGAATTTGGAAGGAGAAAACTCGTCTTGTCCGCTAAAACAGATGAAAACAAGGAGAAAAATGACAAAGAGAGGGTTGATAGTTATTACAAGCGTAATTACAAGGATTACTTTGAGTTCGTAGAAGGGGGTTTGCAAGGAAAGGAAGAGGGGAAGCTTTCAGAAGCAGAAAAGGGTATCCTTGATTGGCTTAAAGCTAACAACAAACTAAAAAGAGAAGAGGCGATGAGTTCTATAGGGCAAACCATGTTAATGGCACTAACAGTTACGGTAAACAAGTATGCATCATCCAATGTGCAGGCAGTTCATAATAGAAAACAAGCAAACCCAACTTTGAGAAGCACCACCAACATGGAATTTGGAAGGAGAGGACTTGTCTTATCCACTAAAACAGAGGAAAACAAGGAGAAAAATGACAAAGAGAGGGTTGATAGTTATTACAAGCGTAATTACAAGGATTACTTTGAGTTCGTAGAAGGGGGTTTGCAAGGAAAGGAGGAGGGGAAGCTTTCAGAAGCAGAAAAGGGTATCCTTGATTGGCTTAAAGCTAACAAGTGA
Protein sequence

>Msa0041610

MSSIRQTMLMALTVKYASSNVQAVHNRKQANPTLRSTNMEFGRRKLVLSAKTDENKEKNDKERVDSYYKRNYKDYFEFVEGGLQGKEEGKLSEAEKGILDWLKANNKLKREEAMSSIGQTMLMALTVTVNKYASSNVQAVHNRKQANPTLRSTTNMEFGRRGLVLSTKTEENKEKNDKERVDSYYKRNYKDYFEFVEGGLQGKEEGKLSEAEKGILDWLKANK*