AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0041540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041540 MtrunA17_Chr1g0207001 100.000 45 0 0 3 47 87 131 1.08e-27 95.5
Msa0041540 MtrunA17_Chr3g0079331 93.333 45 3 0 3 47 87 131 1.25e-25 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0041540 AT1G49975.1 75.556 45 11 0 3 47 85 129 1.80e-20 77.4

Find 52 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACATGTTCATTATCCTTT+AGG 0.222495 1_1:+71975573 Msa0041540:five_prime_UTR
AGCACCACCAACATGGAATT+TGG 0.289275 1_1:+71975746 Msa0041540:five_prime_UTR
GAAGAGGCGATGAGTTCTAT+AGG 0.348824 1_1:+71975623 Msa0041540:five_prime_UTR
GATTACTTTGAGTTCGTAGA+AGG 0.353863 1_1:+71976270 Msa0041540:CDS
TATAGGGCAAACCATGTTAA+TGG 0.362210 1_1:+71975640 Msa0041540:five_prime_UTR
TCTGTTGGGAAATTTGGATA+TGG 0.383992 1_1:+71976522 Msa0041540:three_prime_UTR
ATGGTCAACTAAAAGAGATT+AGG 0.397318 1_1:+71976626 Msa0041540:three_prime_UTR
TCAAATCGACACCTTACAAT+TGG 0.405317 1_1:+71976448 Msa0041540:three_prime_UTR
GCTTAATAAACTTATCCTAA+AGG 0.408244 1_1:-71975588 None:intergenic
CAGAAAAGGGTATCCTTGAT+TGG 0.408398 1_1:+71976331 Msa0041540:CDS
GACCATATATATCATCTTTG+AGG 0.410926 1_1:-71976734 None:intergenic
TGCCTCAAAGATGATATATA+TGG 0.412979 1_1:+71976732 Msa0041540:three_prime_UTR
GAAGCTTTCAGAAGCAGAAA+AGG 0.433331 1_1:+71976317 Msa0041540:CDS
CCTTCCAAATTCCATGTTGG+TGG 0.438290 1_1:-71975750 None:intergenic
TTGGTGGTGCTTCTCAAAGT+TGG 0.441638 1_1:-71975734 None:intergenic
GTTTGCAAGGAAAGGAAGAG+GGG 0.447267 1_1:+71976295 Msa0041540:CDS
TGGTGGTGCTTCTCAAAGTT+GGG 0.449042 1_1:-71975733 None:intergenic
AGGGTCTTGCGTTGCGGTTG+CGG 0.451542 1_1:-71975801 None:intergenic
GGGTTTGCAAGGAAAGGAAG+AGG 0.455002 1_1:+71976293 Msa0041540:CDS
GGTGTCGATTTGAATGTCAT+TGG 0.456847 1_1:-71976438 None:intergenic
CATATGAAGCACAATGTAGT+AGG 0.466639 1_1:+71975547 None:intergenic
TGTTAGCTTTAAGCCAATCA+AGG 0.469309 1_1:-71976344 None:intergenic
GGATATAATCTCCAATTGTA+AGG 0.478685 1_1:-71976459 None:intergenic
AAGAGGCGATGAGTTCTATA+GGG 0.479187 1_1:+71975624 Msa0041540:five_prime_UTR
AGAAGCAATGTCCTTGACTC+AGG 0.482163 1_1:-71975821 None:intergenic
GGTTTGCAAGGAAAGGAAGA+GGG 0.496880 1_1:+71976294 Msa0041540:CDS
AAAATCAGAATTTACAAGCT+AGG 0.501792 1_1:-71976500 None:intergenic
TTATTACAAGCGTAATTACA+AGG 0.507139 1_1:+71976248 Msa0041540:CDS
TCTCCTTCCAAATTCCATGT+TGG 0.526459 1_1:-71975753 None:intergenic
TAGATTACCGAATAGAAAAG+AGG 0.532984 1_1:+71976583 Msa0041540:three_prime_UTR
AGGTGGTGAGTGCAACTACA+TGG 0.543836 1_1:-71976480 None:intergenic
GTTAATGGCACTAACAGTTA+CGG 0.549686 1_1:+71975655 Msa0041540:five_prime_UTR
AACTGTTAGTGCCATTAACA+TGG 0.549756 1_1:-71975651 None:intergenic
GTATGCATCATCCAATGTGC+AGG 0.549946 1_1:+71975685 Msa0041540:five_prime_UTR
TGACTCAGGGTCTTGCGTTG+CGG 0.557938 1_1:-71975807 None:intergenic
TACTTTGAGTTCGTAGAAGG+GGG 0.574786 1_1:+71976273 Msa0041540:CDS
AACATGGAATTTGGAAGGAG+AGG 0.586422 1_1:+71975755 Msa0041540:five_prime_UTR
ATTATGAACTGCCTGCACAT+TGG 0.588435 1_1:-71975696 None:intergenic
ATTACTTTGAGTTCGTAGAA+GGG 0.593520 1_1:+71976271 Msa0041540:CDS
AAGCTTTCAGAAGCAGAAAA+GGG 0.600223 1_1:+71976318 Msa0041540:CDS
GAAGAAAACAGAGGAAAACA+AGG 0.601206 1_1:+71976121 Msa0041540:five_prime_UTR
TTACTTTGAGTTCGTAGAAG+GGG 0.603502 1_1:+71976272 Msa0041540:CDS
AGATTACCGAATAGAAAAGA+GGG 0.610911 1_1:+71976584 Msa0041540:three_prime_UTR
CCTAAAGGATAATGAACATG+TGG 0.616421 1_1:-71975573 None:intergenic
GAAGCAATGTCCTTGACTCA+GGG 0.617035 1_1:-71975820 None:intergenic
CCACCAACATGGAATTTGGA+AGG 0.619705 1_1:+71975750 Msa0041540:five_prime_UTR
TGCGGTTGCGGCGATAACAG+TGG 0.623047 1_1:-71975789 None:intergenic
CAACGCAAGACCCTGAGTCA+AGG 0.623179 1_1:+71975810 Msa0041540:five_prime_UTR
TTTGAGAAGCACCACCAACA+TGG 0.627251 1_1:+71975739 Msa0041540:five_prime_UTR
AGAATATTTGAAGAAAACAG+AGG 0.670181 1_1:+71976112 Msa0041540:intron
ATCAGAATTTACAAGCTAGG+TGG 0.677194 1_1:-71976497 None:intergenic
AAGAGTGTTAGATAATTGCG+AGG 0.693906 1_1:+71976656 Msa0041540:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAGTTTTTGCATATCTATA+TGG + chr1_1:71976607-71976626 Msa0041540:three_prime_UTR 20.0%
!!! ATAGTTTTTGCATATCTATA+TGG + chr1_1:71976607-71976626 Msa0041540:three_prime_UTR 20.0%
! GCTTAATAAACTTATCCTAA+AGG - chr1_1:71975591-71975610 None:intergenic 25.0%
! AGAATATTTGAAGAAAACAG+AGG + chr1_1:71976112-71976131 Msa0041540:intron 25.0%
! TTATTACAAGCGTAATTACA+AGG + chr1_1:71976248-71976267 Msa0041540:CDS 25.0%
! AAAATCAGAATTTACAAGCT+AGG - chr1_1:71976503-71976522 None:intergenic 25.0%
!! TGTAAATTCTGATTTTCTGT+TGG + chr1_1:71976507-71976526 Msa0041540:three_prime_UTR 25.0%
!! GTAAATTCTGATTTTCTGTT+GGG + chr1_1:71976508-71976527 Msa0041540:three_prime_UTR 25.0%
! GCTTAATAAACTTATCCTAA+AGG - chr1_1:71975591-71975610 None:intergenic 25.0%
! AGAATATTTGAAGAAAACAG+AGG + chr1_1:71976112-71976131 Msa0041540:intron 25.0%
! TTATTACAAGCGTAATTACA+AGG + chr1_1:71976248-71976267 Msa0041540:CDS 25.0%
! AAAATCAGAATTTACAAGCT+AGG - chr1_1:71976503-71976522 None:intergenic 25.0%
!! TGTAAATTCTGATTTTCTGT+TGG + chr1_1:71976507-71976526 Msa0041540:three_prime_UTR 25.0%
!! GTAAATTCTGATTTTCTGTT+GGG + chr1_1:71976508-71976527 Msa0041540:three_prime_UTR 25.0%
AAGCAAACTAAAAAGAGAAG+AGG + chr1_1:71975607-71975626 Msa0041540:five_prime_UTR 30.0%
AAAAATGACAGAGGTAAGTA+GGG + chr1_1:71976146-71976165 Msa0041540:intron 30.0%
!! TTTAATCACAGTTTTGTGTG+TGG + chr1_1:71976211-71976230 Msa0041540:intron 30.0%
! ATTACTTTGAGTTCGTAGAA+GGG + chr1_1:71976271-71976290 Msa0041540:CDS 30.0%
!!! TTTTTTCTCAATTGCTAGAC+TGG + chr1_1:71976383-71976402 Msa0041540:three_prime_UTR 30.0%
GGATATAATCTCCAATTGTA+AGG - chr1_1:71976462-71976481 None:intergenic 30.0%
! TGATTTTCTGTTGGGAAATT+TGG + chr1_1:71976516-71976535 Msa0041540:three_prime_UTR 30.0%
TAGATTACCGAATAGAAAAG+AGG + chr1_1:71976583-71976602 Msa0041540:three_prime_UTR 30.0%
AGATTACCGAATAGAAAAGA+GGG + chr1_1:71976584-71976603 Msa0041540:three_prime_UTR 30.0%
! AACTATCCCTCTTTTCTATT+CGG - chr1_1:71976593-71976612 None:intergenic 30.0%
ATGGTCAACTAAAAGAGATT+AGG + chr1_1:71976626-71976645 Msa0041540:three_prime_UTR 30.0%
TGCCTCAAAGATGATATATA+TGG + chr1_1:71976732-71976751 Msa0041540:three_prime_UTR 30.0%
GACCATATATATCATCTTTG+AGG - chr1_1:71976737-71976756 None:intergenic 30.0%
AAGCAAACTAAAAAGAGAAG+AGG + chr1_1:71975607-71975626 Msa0041540:five_prime_UTR 30.0%
AAAAATGACAGAGGTAAGTA+GGG + chr1_1:71976146-71976165 Msa0041540:intron 30.0%
!! TTTAATCACAGTTTTGTGTG+TGG + chr1_1:71976211-71976230 Msa0041540:intron 30.0%
! ATTACTTTGAGTTCGTAGAA+GGG + chr1_1:71976271-71976290 Msa0041540:CDS 30.0%
!!! TTTTTTCTCAATTGCTAGAC+TGG + chr1_1:71976383-71976402 Msa0041540:three_prime_UTR 30.0%
GGATATAATCTCCAATTGTA+AGG - chr1_1:71976462-71976481 None:intergenic 30.0%
! TGATTTTCTGTTGGGAAATT+TGG + chr1_1:71976516-71976535 Msa0041540:three_prime_UTR 30.0%
TAGATTACCGAATAGAAAAG+AGG + chr1_1:71976583-71976602 Msa0041540:three_prime_UTR 30.0%
AGATTACCGAATAGAAAAGA+GGG + chr1_1:71976584-71976603 Msa0041540:three_prime_UTR 30.0%
! AACTATCCCTCTTTTCTATT+CGG - chr1_1:71976593-71976612 None:intergenic 30.0%
ATGGTCAACTAAAAGAGATT+AGG + chr1_1:71976626-71976645 Msa0041540:three_prime_UTR 30.0%
TGCCTCAAAGATGATATATA+TGG + chr1_1:71976732-71976751 Msa0041540:three_prime_UTR 30.0%
GACCATATATATCATCTTTG+AGG - chr1_1:71976737-71976756 None:intergenic 30.0%
CCTAAAGGATAATGAACATG+TGG - chr1_1:71975576-71975595 None:intergenic 35.0%
CCACATGTTCATTATCCTTT+AGG + chr1_1:71975573-71975592 Msa0041540:five_prime_UTR 35.0%
TATAGGGCAAACCATGTTAA+TGG + chr1_1:71975640-71975659 Msa0041540:five_prime_UTR 35.0%
! AACTGTTAGTGCCATTAACA+TGG - chr1_1:71975654-71975673 None:intergenic 35.0%
GTTAATGGCACTAACAGTTA+CGG + chr1_1:71975655-71975674 Msa0041540:five_prime_UTR 35.0%
TAATCAAATGTGACTGTGTC+AGG - chr1_1:71975953-71975972 None:intergenic 35.0%
!!! CGACATGAACATGTTTTTAG+TGG + chr1_1:71976044-71976063 Msa0041540:intron 35.0%
GAAGAAAACAGAGGAAAACA+AGG + chr1_1:71976121-71976140 Msa0041540:five_prime_UTR 35.0%
AACAAGGAGAAAAATGACAG+AGG + chr1_1:71976137-71976156 Msa0041540:exon 35.0%
GAAAAATGACAGAGGTAAGT+AGG + chr1_1:71976145-71976164 Msa0041540:intron 35.0%
AAAATGACAGAGGTAAGTAG+GGG + chr1_1:71976147-71976166 Msa0041540:intron 35.0%
! GATTACTTTGAGTTCGTAGA+AGG + chr1_1:71976270-71976289 Msa0041540:CDS 35.0%
! TTACTTTGAGTTCGTAGAAG+GGG + chr1_1:71976272-71976291 Msa0041540:CDS 35.0%
AAGCTTTCAGAAGCAGAAAA+GGG + chr1_1:71976318-71976337 Msa0041540:CDS 35.0%
!! TGTTAGCTTTAAGCCAATCA+AGG - chr1_1:71976347-71976366 None:intergenic 35.0%
TCAAATCGACACCTTACAAT+TGG + chr1_1:71976448-71976467 Msa0041540:three_prime_UTR 35.0%
ATCAGAATTTACAAGCTAGG+TGG - chr1_1:71976500-71976519 None:intergenic 35.0%
TCTGTTGGGAAATTTGGATA+TGG + chr1_1:71976522-71976541 Msa0041540:three_prime_UTR 35.0%
!! AAGAGTGTTAGATAATTGCG+AGG + chr1_1:71976656-71976675 Msa0041540:three_prime_UTR 35.0%
CCTAAAGGATAATGAACATG+TGG - chr1_1:71975576-71975595 None:intergenic 35.0%
CCACATGTTCATTATCCTTT+AGG + chr1_1:71975573-71975592 Msa0041540:five_prime_UTR 35.0%
TATAGGGCAAACCATGTTAA+TGG + chr1_1:71975640-71975659 Msa0041540:five_prime_UTR 35.0%
! AACTGTTAGTGCCATTAACA+TGG - chr1_1:71975654-71975673 None:intergenic 35.0%
GTTAATGGCACTAACAGTTA+CGG + chr1_1:71975655-71975674 Msa0041540:five_prime_UTR 35.0%
TAATCAAATGTGACTGTGTC+AGG - chr1_1:71975953-71975972 None:intergenic 35.0%
!!! CGACATGAACATGTTTTTAG+TGG + chr1_1:71976044-71976063 Msa0041540:intron 35.0%
GAAGAAAACAGAGGAAAACA+AGG + chr1_1:71976121-71976140 Msa0041540:five_prime_UTR 35.0%
AACAAGGAGAAAAATGACAG+AGG + chr1_1:71976137-71976156 Msa0041540:exon 35.0%
GAAAAATGACAGAGGTAAGT+AGG + chr1_1:71976145-71976164 Msa0041540:intron 35.0%
AAAATGACAGAGGTAAGTAG+GGG + chr1_1:71976147-71976166 Msa0041540:intron 35.0%
! GATTACTTTGAGTTCGTAGA+AGG + chr1_1:71976270-71976289 Msa0041540:CDS 35.0%
! TTACTTTGAGTTCGTAGAAG+GGG + chr1_1:71976272-71976291 Msa0041540:CDS 35.0%
AAGCTTTCAGAAGCAGAAAA+GGG + chr1_1:71976318-71976337 Msa0041540:CDS 35.0%
!! TGTTAGCTTTAAGCCAATCA+AGG - chr1_1:71976347-71976366 None:intergenic 35.0%
TCAAATCGACACCTTACAAT+TGG + chr1_1:71976448-71976467 Msa0041540:three_prime_UTR 35.0%
ATCAGAATTTACAAGCTAGG+TGG - chr1_1:71976500-71976519 None:intergenic 35.0%
TCTGTTGGGAAATTTGGATA+TGG + chr1_1:71976522-71976541 Msa0041540:three_prime_UTR 35.0%
!! AAGAGTGTTAGATAATTGCG+AGG + chr1_1:71976656-71976675 Msa0041540:three_prime_UTR 35.0%
AAGAGGCGATGAGTTCTATA+GGG + chr1_1:71975624-71975643 Msa0041540:five_prime_UTR 40.0%
ATTATGAACTGCCTGCACAT+TGG - chr1_1:71975699-71975718 None:intergenic 40.0%
TCTCCTTCCAAATTCCATGT+TGG - chr1_1:71975756-71975775 None:intergenic 40.0%
AACATGGAATTTGGAAGGAG+AGG + chr1_1:71975755-71975774 Msa0041540:five_prime_UTR 40.0%
! AGAAGTGATGACGCTACATA+GGG - chr1_1:71975899-71975918 None:intergenic 40.0%
CTTCTGAATGTATGTGTGTC+TGG + chr1_1:71975914-71975933 Msa0041540:intron 40.0%
! TACTTTGAGTTCGTAGAAGG+GGG + chr1_1:71976273-71976292 Msa0041540:CDS 40.0%
GAAGCTTTCAGAAGCAGAAA+AGG + chr1_1:71976317-71976336 Msa0041540:CDS 40.0%
!! CAGAAAAGGGTATCCTTGAT+TGG + chr1_1:71976331-71976350 Msa0041540:CDS 40.0%
!! GGTGTCGATTTGAATGTCAT+TGG - chr1_1:71976441-71976460 None:intergenic 40.0%
AAGAGGCGATGAGTTCTATA+GGG + chr1_1:71975624-71975643 Msa0041540:five_prime_UTR 40.0%
ATTATGAACTGCCTGCACAT+TGG - chr1_1:71975699-71975718 None:intergenic 40.0%
TCTCCTTCCAAATTCCATGT+TGG - chr1_1:71975756-71975775 None:intergenic 40.0%
AACATGGAATTTGGAAGGAG+AGG + chr1_1:71975755-71975774 Msa0041540:five_prime_UTR 40.0%
! AGAAGTGATGACGCTACATA+GGG - chr1_1:71975899-71975918 None:intergenic 40.0%
CTTCTGAATGTATGTGTGTC+TGG + chr1_1:71975914-71975933 Msa0041540:intron 40.0%
! TACTTTGAGTTCGTAGAAGG+GGG + chr1_1:71976273-71976292 Msa0041540:CDS 40.0%
GAAGCTTTCAGAAGCAGAAA+AGG + chr1_1:71976317-71976336 Msa0041540:CDS 40.0%
!! CAGAAAAGGGTATCCTTGAT+TGG + chr1_1:71976331-71976350 Msa0041540:CDS 40.0%
!! GGTGTCGATTTGAATGTCAT+TGG - chr1_1:71976441-71976460 None:intergenic 40.0%
GAAGAGGCGATGAGTTCTAT+AGG + chr1_1:71975623-71975642 Msa0041540:five_prime_UTR 45.0%
GTATGCATCATCCAATGTGC+AGG + chr1_1:71975685-71975704 Msa0041540:five_prime_UTR 45.0%
! TGGTGGTGCTTCTCAAAGTT+GGG - chr1_1:71975736-71975755 None:intergenic 45.0%
!! TTGGTGGTGCTTCTCAAAGT+TGG - chr1_1:71975737-71975756 None:intergenic 45.0%
!! TTTGAGAAGCACCACCAACA+TGG + chr1_1:71975739-71975758 Msa0041540:five_prime_UTR 45.0%
AGCACCACCAACATGGAATT+TGG + chr1_1:71975746-71975765 Msa0041540:five_prime_UTR 45.0%
CCTTCCAAATTCCATGTTGG+TGG - chr1_1:71975753-71975772 None:intergenic 45.0%
CCACCAACATGGAATTTGGA+AGG + chr1_1:71975750-71975769 Msa0041540:five_prime_UTR 45.0%
GAAGCAATGTCCTTGACTCA+GGG - chr1_1:71975823-71975842 None:intergenic 45.0%
AGAAGCAATGTCCTTGACTC+AGG - chr1_1:71975824-71975843 None:intergenic 45.0%
! CAGAAGTGATGACGCTACAT+AGG - chr1_1:71975900-71975919 None:intergenic 45.0%
TGACTGTGTCAGGTCAATGT+CGG - chr1_1:71975943-71975962 None:intergenic 45.0%
TCAGCATCGTGTTCTCTCAT+AGG + chr1_1:71976016-71976035 Msa0041540:intron 45.0%
!! ACAGTTTTGTGTGTGGCAGA+GGG + chr1_1:71976218-71976237 Msa0041540:intron 45.0%
GGTTTGCAAGGAAAGGAAGA+GGG + chr1_1:71976294-71976313 Msa0041540:CDS 45.0%
GTTTGCAAGGAAAGGAAGAG+GGG + chr1_1:71976295-71976314 Msa0041540:CDS 45.0%
GAAGAGGCGATGAGTTCTAT+AGG + chr1_1:71975623-71975642 Msa0041540:five_prime_UTR 45.0%
GTATGCATCATCCAATGTGC+AGG + chr1_1:71975685-71975704 Msa0041540:five_prime_UTR 45.0%
! TGGTGGTGCTTCTCAAAGTT+GGG - chr1_1:71975736-71975755 None:intergenic 45.0%
!! TTGGTGGTGCTTCTCAAAGT+TGG - chr1_1:71975737-71975756 None:intergenic 45.0%
!! TTTGAGAAGCACCACCAACA+TGG + chr1_1:71975739-71975758 Msa0041540:five_prime_UTR 45.0%
AGCACCACCAACATGGAATT+TGG + chr1_1:71975746-71975765 Msa0041540:five_prime_UTR 45.0%
CCTTCCAAATTCCATGTTGG+TGG - chr1_1:71975753-71975772 None:intergenic 45.0%
CCACCAACATGGAATTTGGA+AGG + chr1_1:71975750-71975769 Msa0041540:five_prime_UTR 45.0%
GAAGCAATGTCCTTGACTCA+GGG - chr1_1:71975823-71975842 None:intergenic 45.0%
AGAAGCAATGTCCTTGACTC+AGG - chr1_1:71975824-71975843 None:intergenic 45.0%
! CAGAAGTGATGACGCTACAT+AGG - chr1_1:71975900-71975919 None:intergenic 45.0%
TGACTGTGTCAGGTCAATGT+CGG - chr1_1:71975943-71975962 None:intergenic 45.0%
TCAGCATCGTGTTCTCTCAT+AGG + chr1_1:71976016-71976035 Msa0041540:intron 45.0%
!! ACAGTTTTGTGTGTGGCAGA+GGG + chr1_1:71976218-71976237 Msa0041540:intron 45.0%
GGTTTGCAAGGAAAGGAAGA+GGG + chr1_1:71976294-71976313 Msa0041540:CDS 45.0%
GTTTGCAAGGAAAGGAAGAG+GGG + chr1_1:71976295-71976314 Msa0041540:CDS 45.0%
!! CACAGTTTTGTGTGTGGCAG+AGG + chr1_1:71976217-71976236 Msa0041540:intron 50.0%
TTCGTAGAAGGGGGTTTGCA+AGG + chr1_1:71976282-71976301 Msa0041540:CDS 50.0%
AGAAGGGGGTTTGCAAGGAA+AGG + chr1_1:71976287-71976306 Msa0041540:CDS 50.0%
GGGTTTGCAAGGAAAGGAAG+AGG + chr1_1:71976293-71976312 Msa0041540:CDS 50.0%
AGGTGGTGAGTGCAACTACA+TGG - chr1_1:71976483-71976502 None:intergenic 50.0%
!! CACAGTTTTGTGTGTGGCAG+AGG + chr1_1:71976217-71976236 Msa0041540:intron 50.0%
TTCGTAGAAGGGGGTTTGCA+AGG + chr1_1:71976282-71976301 Msa0041540:CDS 50.0%
AGAAGGGGGTTTGCAAGGAA+AGG + chr1_1:71976287-71976306 Msa0041540:CDS 50.0%
GGGTTTGCAAGGAAAGGAAG+AGG + chr1_1:71976293-71976312 Msa0041540:CDS 50.0%
AGGTGGTGAGTGCAACTACA+TGG - chr1_1:71976483-71976502 None:intergenic 50.0%
TGACTCAGGGTCTTGCGTTG+CGG - chr1_1:71975810-71975829 None:intergenic 55.0%
CAACGCAAGACCCTGAGTCA+AGG + chr1_1:71975810-71975829 Msa0041540:five_prime_UTR 55.0%
TGACTCAGGGTCTTGCGTTG+CGG - chr1_1:71975810-71975829 None:intergenic 55.0%
CAACGCAAGACCCTGAGTCA+AGG + chr1_1:71975810-71975829 Msa0041540:five_prime_UTR 55.0%
TGCGGTTGCGGCGATAACAG+TGG - chr1_1:71975792-71975811 None:intergenic 60.0%
AGGGTCTTGCGTTGCGGTTG+CGG - chr1_1:71975804-71975823 None:intergenic 60.0%
TGCGGTTGCGGCGATAACAG+TGG - chr1_1:71975792-71975811 None:intergenic 60.0%
AGGGTCTTGCGTTGCGGTTG+CGG - chr1_1:71975804-71975823 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 71975562 71976771 71975562 ID=Msa0041540;Name=Msa0041540
chr1_1 mRNA 71975562 71976771 71975562 ID=Msa0041540-mRNA-1;Parent=Msa0041540;Name=Msa0041540-mRNA-1;_AED=0.12;_eAED=0.12;_QI=323|1|1|1|1|1|3|400|47
chr1_1 exon 71975562 71975848 71975562 ID=Msa0041540-mRNA-1:exon:23877;Parent=Msa0041540-mRNA-1
chr1_1 exon 71976114 71976158 71976114 ID=Msa0041540-mRNA-1:exon:23878;Parent=Msa0041540-mRNA-1
chr1_1 exon 71976237 71976771 71976237 ID=Msa0041540-mRNA-1:exon:23879;Parent=Msa0041540-mRNA-1
chr1_1 five_prime_UTR 71975562 71975848 71975562 ID=Msa0041540-mRNA-1:five_prime_utr;Parent=Msa0041540-mRNA-1
chr1_1 five_prime_UTR 71976114 71976149 71976114 ID=Msa0041540-mRNA-1:five_prime_utr;Parent=Msa0041540-mRNA-1
chr1_1 CDS 71976150 71976158 71976150 ID=Msa0041540-mRNA-1:cds;Parent=Msa0041540-mRNA-1
chr1_1 CDS 71976237 71976371 71976237 ID=Msa0041540-mRNA-1:cds;Parent=Msa0041540-mRNA-1
chr1_1 three_prime_UTR 71976372 71976771 71976372 ID=Msa0041540-mRNA-1:three_prime_utr;Parent=Msa0041540-mRNA-1
Gene Sequence

>Msa0041540

ATGACAGAGAGGGTTGATAGTTATTACAAGCGTAATTACAAGGATTACTTTGAGTTCGTAGAAGGGGGTTTGCAAGGAAAGGAAGAGGGGAAGCTTTCAGAAGCAGAAAAGGGTATCCTTGATTGGCTTAAAGCTAACAAGTGA

Protein sequence

>Msa0041540

MTERVDSYYKRNYKDYFEFVEGGLQGKEEGKLSEAEKGILDWLKANK*