AlfalfaGEDB | Msa1456650

M. sativa cultivar zhongmu-4 / Msa1456650

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009642 GO:0009787 GO:0009889 GO:0009958 GO:0009962 GO:0009966 GO:0010099 GO:0010100 GO:0010380 GO:0010646 GO:0019222 GO:0023051 GO:0031323 GO:0031326 GO:0031537 GO:0031540 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048519 GO:0048578 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051171 GO:0051193 GO:0051239 GO:0051240 GO:0051241 GO:0065007 GO:0080090 GO:0090056 GO:0090227 GO:1901333 GO:1901401 GO:1901419 GO:1901463 GO:1905957 GO:2000023 GO:2000026 GO:2000028 GO:2000030 GO:2000069 GO:2000241 GO:2000243 GO:2000280
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456650	XP_003613486.1	94.898	196	6	1	1	196	1	192	3.79e-132	378

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456650	sp\|F4I3V6\|SHW1_ARATH	70.000	90	27	0	96	185	97	186	4.68e-39	135

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456650	G7K712	94.898	196	6	1	1	196	1	192	1.81e-132	378

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa1456650	-0.841990	3.398350e-58	-8.615850e-47
Msa0000780	Msa1456650	0.819652	1.037863e-52	-8.615850e-47
Msa0001950	Msa1456650	0.840761	7.158621e-58	-8.615850e-47
Msa0003280	Msa1456650	0.811856	5.678737e-51	-8.615850e-47
Msa0003470	Msa1456650	0.888701	4.673313e-73	-8.615850e-47
Msa0005350	Msa1456650	0.820563	6.420229e-53	-8.615850e-47
Msa0006820	Msa1456650	0.824470	7.934854e-54	-8.615850e-47
Msa0007450	Msa1456650	0.845226	4.634860e-59	-8.615850e-47
Msa0008830	Msa1456650	0.804489	2.107456e-49	-8.615850e-47
Msa0008850	Msa1456650	0.869538	2.872642e-66	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456650	MtrunA17_Chr5g0415281	94.898	196	6	1	1	196	1	192	3.48e-136	378
Msa1456650	MtrunA17_Chr3g0092551	83.495	103	17	0	1	103	13	115	2.00e-58	179
Msa1456650	MtrunA17_Chr1g0213191	85.437	103	12	1	1	103	1	100	3.36e-50	158
Msa1456650	MtrunA17_Chr6g0475501	88.350	103	8	1	1	103	1	99	7.55e-50	157

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1456650	AT1G69935.1	70.000	90	27	96	185	97	186	4.76e-40	135
Msa1456650	AT4G33780.1	51.685	89	43	95	183	95	183	1.74e-26	100
Msa1456650	AT1G69935.2	71.930	57	16	96	152	97	153	1.62e-21	86.7

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Find 46 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAGAAACTTACGAGTTG+AGG	0.534806	tig0037657:-670	None:intergenic
AAGTGGTGAAGATTGGAACG+TGG	0.670949	tig0037657:-225	None:intergenic
AATCAAGGGAACAATTCCTT+TGG	0.435782	tig0037657:+3273	Msa1456650:CDS
AATCATCAATTGCAATAGCA+AGG	0.575080	tig0037657:+326	Msa1456650:CDS
AATGGGAATAGTTTCAATCA+AGG	0.493079	tig0037657:+3258	Msa1456650:CDS
AATGTCTAAAAGGGCTAAAA+AGG	0.323229	tig0037657:+615	Msa1456650:CDS
ACACCTTCATCAATCTCATA+TGG	0.466013	tig0037657:-493	None:intergenic
ACGATGGTTGTAGTAGAGTT+TGG	0.361096	tig0037657:-292	None:intergenic
AGAGTTTGGAAGAAAAGGGT+TGG	0.542234	tig0037657:-278	None:intergenic
AGCTGCCCATATCACACGCA+GGG	0.602607	tig0037657:-3217	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAAGAATGTGAACATTGTT+TGG	-	tig0037657:255-274	None:intergenic	30.0%
TAGTAGAGTTTGGAAGAAAA+GGG	-	tig0037657:285-304	None:intergenic	30.0%
AATCATCAATTGCAATAGCA+AGG	+	tig0037657:326-345	Msa1456650:CDS	30.0%
AATGTCTAAAAGGGCTAAAA+AGG	+	tig0037657:615-634	Msa1456650:CDS	30.0%
CCAAGGAACAATAATTGTTT+AGG	-	tig0037657:857-876	None:intergenic	30.0%
CCTAAACAATTATTGTTCCT+TGG	+	tig0037657:854-873	Msa1456650:intron	30.0%
AAACAATTATTGTTCCTTGG+TGG	+	tig0037657:857-876	Msa1456650:intron	30.0%
AGTTGAATAAGTAGGAAATC+CGG	-	tig0037657:1469-1488	None:intergenic	30.0%
GTACATCACTAGTAATTAGT+CGG	+	tig0037657:1814-1833	Msa1456650:intron	30.0%
AACCATCACAAAATTCACTA+AGG	-	tig0037657:1904-1923	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0037657	gene	129	3604	129	ID=Msa1456650;Name=Msa1456650
tig0037657	mRNA	129	3604	129	ID=Msa1456650-mRNA-1;Parent=Msa1456650;Name=Msa1456650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=39\|1\|1\|1\|1\|1\|4\|296\|196
tig0037657	exon	129	347	129	ID=Msa1456650-mRNA-1:exon:20830;Parent=Msa1456650-mRNA-1
tig0037657	exon	469	678	469	ID=Msa1456650-mRNA-1:exon:20831;Parent=Msa1456650-mRNA-1
tig0037657	exon	2265	2330	2265	ID=Msa1456650-mRNA-1:exon:20832;Parent=Msa1456650-mRNA-1
tig0037657	exon	3174	3604	3174	ID=Msa1456650-mRNA-1:exon:20833;Parent=Msa1456650-mRNA-1
tig0037657	five_prime_UTR	129	167	129	ID=Msa1456650-mRNA-1:five_prime_utr;Parent=Msa1456650-mRNA-1
tig0037657	CDS	168	347	168	ID=Msa1456650-mRNA-1:cds;Parent=Msa1456650-mRNA-1
tig0037657	CDS	469	678	469	ID=Msa1456650-mRNA-1:cds;Parent=Msa1456650-mRNA-1
tig0037657	CDS	2265	2330	2265	ID=Msa1456650-mRNA-1:cds;Parent=Msa1456650-mRNA-1
tig0037657	CDS	3174	3308	3174	ID=Msa1456650-mRNA-1:cds;Parent=Msa1456650-mRNA-1
tig0037657	three_prime_UTR	3309	3604	3309	ID=Msa1456650-mRNA-1:three_prime_utr;Parent=Msa1456650-mRNA-1

Gene Sequence

>Msa1456650

ATGGCAGCAACAACATCAACTGCAACAACAACACAATTGATCAATCTCACGCGCTCTCCACGTTCCAATCTTCACCACTTCTCACCAAACAATGTTCACATTCTTCATCACCAACCCTTTTCTTCCAAACTCTACTACAACCATCGTTCAAATCTCAAAATCATCAATTGCAATAGCAAGCTGAATAACTCAAGTGGTGGAGAACCATATGAGATTGATGAAGGTGTTTTTGGGGGATATGATGGGATTGAAGAGGAGAGTGATGAAGATGATGCTGAGAGTAGTGTTGATTTGTTGATTAGATTCTTGCAGAGTATGTTTAAGAAAATGTCTAAAAGGGCTAAAAAGGCTTCGAGGAGTGTTTTGCCTACAGTGATATCTCCTCAACTCGTTTCTTTTGCTGTTGATGGGACTCTGCTACTTGCTACACTTTCTGTTGTCAAAGCACTTCTTGAGGTCATCTGCAACATTGGAGGCACTGTATTTGCTGCAATTTTGGCCCTGCGTGTGATATGGGCAGCTGTTTCTCACTTCCAGTCCAATGGGAATAGTTTCAATCAAGGGAACAATTCCTTTGGTGCTATAGCCTAG

Protein sequence

>Msa1456650

MAATTSTATTTQLINLTRSPRSNLHHFSPNNVHILHHQPFSSKLYYNHRSNLKIINCNSKLNNSSGGEPYEIDEGVFGGYDGIEEESDEDDAESSVDLLIRFLQSMFKKMSKRAKKASRSVLPTVISPQLVSFAVDGTLLLATLSVVKALLEVICNIGGTVFAAILALRVIWAAVSHFQSNGNSFNQGNNSFGAIA*