AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1456650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456650 MtrunA17_Chr5g0415281 94.898 196 6 1 1 196 1 192 3.48e-136 378
Msa1456650 MtrunA17_Chr3g0092551 83.495 103 17 0 1 103 13 115 2.00e-58 179
Msa1456650 MtrunA17_Chr1g0213191 85.437 103 12 1 1 103 1 100 3.36e-50 158
Msa1456650 MtrunA17_Chr6g0475501 88.350 103 8 1 1 103 1 99 7.55e-50 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1456650 AT1G69935.1 70.000 90 27 0 96 185 97 186 4.76e-40 135
Msa1456650 AT4G33780.1 51.685 89 43 0 95 183 95 183 1.74e-26 100
Msa1456650 AT1G69935.2 71.930 57 16 0 96 152 97 153 1.62e-21 86.7

Find 46 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTATTTGCTGCAATTT+TGG 0.129989 tig0037657:+3194 Msa1456650:CDS
TGTTTAAGAAAATGTCTAAA+AGG 0.262129 tig0037657:+605 Msa1456650:CDS
AATGTCTAAAAGGGCTAAAA+AGG 0.323229 tig0037657:+615 Msa1456650:CDS
GTAGTAGAGTTTGGAAGAAA+AGG 0.351001 tig0037657:-283 None:intergenic
ACGATGGTTGTAGTAGAGTT+TGG 0.361096 tig0037657:-292 None:intergenic
TTGCAGGTCATCTGCAACAT+TGG 0.387086 tig0037657:+3168 Msa1456650:intron
TAGTAGAGTTTGGAAGAAAA+GGG 0.416897 tig0037657:-282 None:intergenic
ATCTTTAAAAGCTTAACGTT+CGG 0.417700 tig0037657:+139 Msa1456650:five_prime_UTR
AATCAAGGGAACAATTCCTT+TGG 0.435782 tig0037657:+3273 Msa1456650:CDS
TGGTGAGAAGTGGTGAAGAT+TGG 0.439948 tig0037657:-232 None:intergenic
TGAAGAATGTGAACATTGTT+TGG 0.450272 tig0037657:-252 None:intergenic
ACACCTTCATCAATCTCATA+TGG 0.466013 tig0037657:-493 None:intergenic
TTGATTGAAACTATTCCCAT+TGG 0.473388 tig0037657:-3256 None:intergenic
TGGTATATATAACATCCGTC+TGG 0.474518 tig0037657:-3411 None:intergenic
TTTGGCCCTGCGTGTGATAT+GGG 0.475980 tig0037657:+3212 Msa1456650:CDS
TTCTTTCTCAACACCAAGGA+TGG 0.476413 tig0037657:-3367 None:intergenic
GTTTCTCACTTCCAGTCCAA+TGG 0.484407 tig0037657:+3240 Msa1456650:CDS
ATAGCCTAGACATCTTCATA+TGG 0.489123 tig0037657:+3300 Msa1456650:exon
TTTCTCACTTCCAGTCCAAT+GGG 0.491752 tig0037657:+3241 Msa1456650:CDS
AATGGGAATAGTTTCAATCA+AGG 0.493079 tig0037657:+3258 Msa1456650:CDS
GCTTAACGTTCGGTCTCAAA+TGG 0.494852 tig0037657:+149 Msa1456650:exon
GTTTAAGAAAATGTCTAAAA+GGG 0.503270 tig0037657:+606 Msa1456650:CDS
CAGCTGAATAAAACCATCCT+TGG 0.506850 tig0037657:+3354 Msa1456650:three_prime_UTR
TGAAACTATTCCCATTGGAC+TGG 0.507228 tig0037657:-3251 None:intergenic
CTTTCCATATGAAGATGTCT+AGG 0.522812 tig0037657:-3304 None:intergenic
AAGGAGAAACTTACGAGTTG+AGG 0.534806 tig0037657:-670 None:intergenic
AGAGTTTGGAAGAAAAGGGT+TGG 0.542234 tig0037657:-278 None:intergenic
CTTCATATGGAAAGTTCTTG+AGG 0.549749 tig0037657:+3313 Msa1456650:three_prime_UTR
CAGGTCATCTGCAACATTGG+AGG 0.554407 tig0037657:+3171 Msa1456650:intron
ATGGGAATAGTTTCAATCAA+GGG 0.569470 tig0037657:+3259 Msa1456650:CDS
AATCATCAATTGCAATAGCA+AGG 0.575080 tig0037657:+326 Msa1456650:CDS
TGTCTAGGCTATAGCACCAA+AGG 0.578357 tig0037657:-3289 None:intergenic
GGTATATATAACATCCGTCT+GGG 0.593557 tig0037657:-3410 None:intergenic
TGTTGTCAAAGCACTTCTTG+AGG 0.596810 tig0037657:+2309 Msa1456650:CDS
AGCTGCCCATATCACACGCA+GGG 0.602607 tig0037657:-3217 None:intergenic
GAACCATATGAGATTGATGA+AGG 0.606231 tig0037657:+490 Msa1456650:CDS
TAGCTGAATAACTCAAGTGG+TGG 0.614691 tig0037657:+466 Msa1456650:intron
TTGTAGCTGAATAACTCAAG+TGG 0.616039 tig0037657:+463 Msa1456650:intron
AGTTGAGGAGATATCACTGT+AGG 0.617126 tig0037657:-655 None:intergenic
GAACATTGTTTGGTGAGAAG+TGG 0.632819 tig0037657:-242 None:intergenic
TTTCTTCTTTCTCAACACCA+AGG 0.644519 tig0037657:-3371 None:intergenic
CAGCTGCCCATATCACACGC+AGG 0.644863 tig0037657:-3218 None:intergenic
GGGATATGATGGGATTGAAG+AGG 0.656878 tig0037657:+522 Msa1456650:CDS
AAGTGGTGAAGATTGGAACG+TGG 0.670949 tig0037657:-225 None:intergenic
TAGATATGAATACACCCAGA+CGG 0.678588 tig0037657:+3396 Msa1456650:three_prime_UTR
TAGTATGTAAGACTCATGTG+TGG 0.726480 tig0037657:-3431 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTGTTTTTAGAAAA+TGG + tig0037657:396-415 Msa1456650:intron 10.0%
!!! AAAAATTGTTTTTAGAAAAT+GGG + tig0037657:397-416 Msa1456650:intron 10.0%
!!! TTAGATTATTCTTATATTTT+TGG + tig0037657:3003-3022 Msa1456650:intron 10.0%
!!! ATTTTTTATTACAGGTAATA+TGG - tig0037657:1380-1399 None:intergenic 15.0%
!!! ATGATAGTAATTTAAAATGA+AGG - tig0037657:1592-1611 None:intergenic 15.0%
!!! TTAAAATTTGAAACATGAAA+AGG - tig0037657:1956-1975 None:intergenic 15.0%
!!! ATGTTTCAAATTTTAAGATT+GGG + tig0037657:1960-1979 Msa1456650:intron 15.0%
!! TGTTTAAGAAAATGTCTAAA+AGG + tig0037657:605-624 Msa1456650:CDS 20.0%
!! GTTTAAGAAAATGTCTAAAA+GGG + tig0037657:606-625 Msa1456650:CDS 20.0%
!! TTTAAAAGTGATAAGCAATT+GGG - tig0037657:902-921 None:intergenic 20.0%
!! AATCTAAACATACATTAACA+TGG - tig0037657:967-986 None:intergenic 20.0%
!! TTAATGTATGTTTAGATTTG+TGG + tig0037657:969-988 Msa1456650:intron 20.0%
!! GCATTTACTATAGTAAATAT+AGG + tig0037657:1033-1052 Msa1456650:intron 20.0%
!! TACTATAGTAAATATAGGTT+AGG + tig0037657:1038-1057 Msa1456650:intron 20.0%
!! TTATTTCATTTAAATGCTCT+TGG + tig0037657:1317-1336 Msa1456650:intron 20.0%
!! TATTTCATTTAAATGCTCTT+GGG + tig0037657:1318-1337 Msa1456650:intron 20.0%
!!! TTTTTTTTTTGTTCAGTACA+AGG - tig0037657:1791-1810 None:intergenic 20.0%
!!! CATGTTTCAAATTTTAAGAT+TGG + tig0037657:1959-1978 Msa1456650:intron 20.0%
!!! TGTTTCAAATTTTAAGATTG+GGG + tig0037657:1961-1980 Msa1456650:intron 20.0%
!! CAGAATAAAAAAGAAAATAG+CGG - tig0037657:2397-2416 None:intergenic 20.0%
!! TTAATTCTCTTTCTAGATAA+TGG + tig0037657:2853-2872 Msa1456650:intron 20.0%
!! ATCTTTAAAAGCTTAACGTT+CGG + tig0037657:139-158 Msa1456650:five_prime_UTR 25.0%
! GTTTAAAAGTGATAAGCAAT+TGG - tig0037657:903-922 None:intergenic 25.0%
! TGATTATTCATGATCACTAA+TGG - tig0037657:1064-1083 None:intergenic 25.0%
!! CATGACATTTTTGTATAAAC+CGG + tig0037657:1159-1178 Msa1456650:intron 25.0%
!! ATGACATTTTTGTATAAACC+GGG + tig0037657:1160-1179 Msa1456650:intron 25.0%
!!! AACGCTACATTTTTTATTAC+AGG - tig0037657:1388-1407 None:intergenic 25.0%
! TTTCCTACTTATTCAACTTA+AGG + tig0037657:1471-1490 Msa1456650:intron 25.0%
!!! AACACTACACTCTTTTTTTT+GGG - tig0037657:1524-1543 None:intergenic 25.0%
!!! AAACACTACACTCTTTTTTT+TGG - tig0037657:1525-1544 None:intergenic 25.0%
!!! AATTATCACATTCTGAAGTT+TGG + tig0037657:1563-1582 Msa1456650:intron 25.0%
!! TCAACTAATTTAAACGCTTT+TGG + tig0037657:1669-1688 Msa1456650:intron 25.0%
!! CAACTAATTTAAACGCTTTT+GGG + tig0037657:1670-1689 Msa1456650:intron 25.0%
!! CATTTAAATTGACTTCTTAG+AGG + tig0037657:1706-1725 Msa1456650:intron 25.0%
!!! ACTCTTACACTTTTTGTTAT+TGG - tig0037657:1737-1756 None:intergenic 25.0%
!! GTTTGATTCTGCTTAATTTT+TGG - tig0037657:2074-2093 None:intergenic 25.0%
! CTAGTGTTTAGAAATCAAAA+TGG - tig0037657:2123-2142 None:intergenic 25.0%
!!! CATTTTGATTTCTAAACACT+AGG + tig0037657:2121-2140 Msa1456650:intron 25.0%
!!! GGTGCTTTTTTTAAAAGTTT+AGG + tig0037657:2170-2189 Msa1456650:intron 25.0%
!!! TTTTCATTTTGCGTCTTATT+TGG + tig0037657:2228-2247 Msa1456650:intron 25.0%
! GAAAATGTTGACAAAGTAAA+CGG - tig0037657:2528-2547 None:intergenic 25.0%
! TCTAGAAAGAGAATTAAGAA+AGG - tig0037657:2850-2869 None:intergenic 25.0%
! ATATAAGCTAACCAAAAGTA+TGG + tig0037657:3041-3060 Msa1456650:intron 25.0%
TGAAGAATGTGAACATTGTT+TGG - tig0037657:255-274 None:intergenic 30.0%
TAGTAGAGTTTGGAAGAAAA+GGG - tig0037657:285-304 None:intergenic 30.0%
!!! TGATTTTGAGATTTGAACGA+TGG - tig0037657:311-330 None:intergenic 30.0%
AATCATCAATTGCAATAGCA+AGG + tig0037657:326-345 Msa1456650:CDS 30.0%
!!! AGATTGATGAAGGTGTTTTT+GGG + tig0037657:500-519 Msa1456650:CDS 30.0%
AATGTCTAAAAGGGCTAAAA+AGG + tig0037657:615-634 Msa1456650:CDS 30.0%
! ATTTTTGTGTGTTAACCCTT+CGG + tig0037657:727-746 Msa1456650:intron 30.0%
! TTCCTAGGTGAAACAATTTT+TGG - tig0037657:819-838 None:intergenic 30.0%
CCAAGGAACAATAATTGTTT+AGG - tig0037657:857-876 None:intergenic 30.0%
CCTAAACAATTATTGTTCCT+TGG + tig0037657:854-873 Msa1456650:intron 30.0%
AAACAATTATTGTTCCTTGG+TGG + tig0037657:857-876 Msa1456650:intron 30.0%
! CTTTTAAACGAGTTATCCTT+AGG + tig0037657:914-933 Msa1456650:intron 30.0%
!!! GAACTCAGTTTTTTATCCTA+AGG - tig0037657:933-952 None:intergenic 30.0%
!! TGTGATAGTTTTACAGAGAA+TGG - tig0037657:1118-1137 None:intergenic 30.0%
AGTTGAATAAGTAGGAAATC+CGG - tig0037657:1469-1488 None:intergenic 30.0%
!! TCACCTTAAGTTGAATAAGT+AGG - tig0037657:1477-1496 None:intergenic 30.0%
!! TAATTTAAACGCTTTTGGGT+TGG + tig0037657:1674-1693 Msa1456650:intron 30.0%
!!! AATTTAAACGCTTTTGGGTT+GGG + tig0037657:1675-1694 Msa1456650:intron 30.0%
GTACATCACTAGTAATTAGT+CGG + tig0037657:1814-1833 Msa1456650:intron 30.0%
AACCATCACAAAATTCACTA+AGG - tig0037657:1904-1923 None:intergenic 30.0%
!!! TTTAAGATTGGGGTTTTGTT+TGG + tig0037657:1971-1990 Msa1456650:intron 30.0%
! CAAACATGCAATTTTTCATG+AGG + tig0037657:2089-2108 Msa1456650:intron 30.0%
TAGAATATAAATGTGCTGCA+TGG + tig0037657:2149-2168 Msa1456650:intron 30.0%
TAAGACGCAAAATGAAAAAG+CGG - tig0037657:2226-2245 None:intergenic 30.0%
!!! ATTTTGCGTCTTATTTGGAT+CGG + tig0037657:2233-2252 Msa1456650:intron 30.0%
GTCTCAAGTAGTGTTTATAA+CGG - tig0037657:2442-2461 None:intergenic 30.0%
TCATTTCCTAAAACTTGTGT+TGG + tig0037657:2553-2572 Msa1456650:intron 30.0%
! GTAAAACCAACACAAGTTTT+AGG - tig0037657:2562-2581 None:intergenic 30.0%
! AAGAGTCTCTTTTCTCATAT+TGG + tig0037657:2732-2751 Msa1456650:intron 30.0%
GATAACATTTGTGTAGTTTG+AGG + tig0037657:2916-2935 Msa1456650:intron 30.0%
AGTGAACTTGAACAGTTATT+GGG + tig0037657:2973-2992 Msa1456650:intron 30.0%
AAAGCAGAGAAATTCTGTAA+AGG - tig0037657:3088-3107 None:intergenic 30.0%
GAATTTCTCTGCTTTATAAC+TGG + tig0037657:3093-3112 Msa1456650:intron 30.0%
AAGTAGTAGCTAACAACAAT+CGG + tig0037657:3128-3147 Msa1456650:intron 30.0%
TTGATTGAAACTATTCCCAT+TGG - tig0037657:3259-3278 None:intergenic 30.0%
AATGGGAATAGTTTCAATCA+AGG + tig0037657:3258-3277 Msa1456650:CDS 30.0%
ATGGGAATAGTTTCAATCAA+GGG + tig0037657:3259-3278 Msa1456650:CDS 30.0%
GTAGTAGAGTTTGGAAGAAA+AGG - tig0037657:286-305 None:intergenic 35.0%
TTGTAGCTGAATAACTCAAG+TGG + tig0037657:463-482 Msa1456650:intron 35.0%
GAACCATATGAGATTGATGA+AGG + tig0037657:490-509 Msa1456650:CDS 35.0%
ACACCTTCATCAATCTCATA+TGG - tig0037657:496-515 None:intergenic 35.0%
!!! GAGATTGATGAAGGTGTTTT+TGG + tig0037657:499-518 Msa1456650:CDS 35.0%
!!! GATTGATGAAGGTGTTTTTG+GGG + tig0037657:501-520 Msa1456650:CDS 35.0%
!!! ATTGATGAAGGTGTTTTTGG+GGG + tig0037657:502-521 Msa1456650:CDS 35.0%
CTTAGTGAAGACTGAAGAAA+AGG - tig0037657:692-711 None:intergenic 35.0%
TTCTTCAGTCTTCACTAAGT+TGG + tig0037657:693-712 Msa1456650:intron 35.0%
!!! TAGGTGAAACAATTTTTGGC+CGG - tig0037657:815-834 None:intergenic 35.0%
! TTTTTGTATAAACCGGGCTT+CGG + tig0037657:1166-1185 Msa1456650:intron 35.0%
CAACAATAAAACTCATGAGC+AGG - tig0037657:1242-1261 None:intergenic 35.0%
GTCGCTTCTAACTTAATCAA+AGG - tig0037657:1292-1311 None:intergenic 35.0%
TTGAATAAGTAGGAAATCCG+GGG - tig0037657:1467-1486 None:intergenic 35.0%
GTTGAATAAGTAGGAAATCC+GGG - tig0037657:1468-1487 None:intergenic 35.0%
!! TTTTGGGTCAATTAGCATAG+TGG - tig0037657:1508-1527 None:intergenic 35.0%
TTCACTAAGGAGTTACAAAG+AGG - tig0037657:1891-1910 None:intergenic 35.0%
! CTCCTTAGTGAATTTTGTGA+TGG + tig0037657:1899-1918 Msa1456650:intron 35.0%
!! GTTTGGATTAGCTAATCTTG+TGG + tig0037657:1988-2007 Msa1456650:intron 35.0%
! ATGCAATTTTTCATGAGGCA+TGG + tig0037657:2094-2113 Msa1456650:intron 35.0%
!!! TTTTGCGTCTTATTTGGATC+GGG + tig0037657:2234-2253 Msa1456650:intron 35.0%
TTATTTGGATCGGGAAATTC+AGG + tig0037657:2243-2262 Msa1456650:intron 35.0%
!!! AGGTTTCTTTTGCTGTTGAT+GGG + tig0037657:2263-2282 Msa1456650:intron 35.0%
! ATTGTTTCTTCACTACTGTG+TGG + tig0037657:2333-2352 Msa1456650:intron 35.0%
AATGTTGACAAAGTAAACGG+AGG - tig0037657:2525-2544 None:intergenic 35.0%
! AAGAAGATAAAGTGCTAGCT+AGG + tig0037657:2627-2646 Msa1456650:intron 35.0%
! AGAAGATAAAGTGCTAGCTA+GGG + tig0037657:2628-2647 Msa1456650:intron 35.0%
GAGTGAACTTGAACAGTTAT+TGG + tig0037657:2972-2991 Msa1456650:intron 35.0%
! CAATTCCAGAACCATACTTT+TGG - tig0037657:3055-3074 None:intergenic 35.0%
AGTAGTAGCTAACAACAATC+GGG + tig0037657:3129-3148 Msa1456650:intron 35.0%
! GAATATTGACTGTGAATTGC+AGG + tig0037657:3152-3171 Msa1456650:intron 35.0%
!! CACTGTATTTGCTGCAATTT+TGG + tig0037657:3194-3213 Msa1456650:CDS 35.0%
AATCAAGGGAACAATTCCTT+TGG + tig0037657:3273-3292 Msa1456650:CDS 35.0%
ATAGCCTAGACATCTTCATA+TGG + tig0037657:3300-3319 Msa1456650:exon 35.0%
CTTTCCATATGAAGATGTCT+AGG - tig0037657:3307-3326 None:intergenic 35.0%
CTTCATATGGAAAGTTCTTG+AGG + tig0037657:3313-3332 Msa1456650:three_prime_UTR 35.0%
! CTTGAGGTGCATATTTTATG+TGG + tig0037657:3329-3348 Msa1456650:three_prime_UTR 35.0%
TTTCTTCTTTCTCAACACCA+AGG - tig0037657:3374-3393 None:intergenic 35.0%
TAGATATGAATACACCCAGA+CGG + tig0037657:3396-3415 Msa1456650:three_prime_UTR 35.0%
GGTATATATAACATCCGTCT+GGG - tig0037657:3413-3432 None:intergenic 35.0%
TGGTATATATAACATCCGTC+TGG - tig0037657:3414-3433 None:intergenic 35.0%
TAGTATGTAAGACTCATGTG+TGG - tig0037657:3434-3453 None:intergenic 35.0%
! GAACATTGTTTGGTGAGAAG+TGG - tig0037657:245-264 None:intergenic 40.0%
AGAGTTTGGAAGAAAAGGGT+TGG - tig0037657:281-300 None:intergenic 40.0%
ACGATGGTTGTAGTAGAGTT+TGG - tig0037657:295-314 None:intergenic 40.0%
TAGCTGAATAACTCAAGTGG+TGG + tig0037657:466-485 Msa1456650:intron 40.0%
!!! GTGTTTTTGGGGGATATGAT+GGG + tig0037657:512-531 Msa1456650:CDS 40.0%
AGTTGAGGAGATATCACTGT+AGG - tig0037657:658-677 None:intergenic 40.0%
AAGGAGAAACTTACGAGTTG+AGG - tig0037657:673-692 None:intergenic 40.0%
! TTCACTAAGTTGGCGAAATC+CGG + tig0037657:703-722 Msa1456650:intron 40.0%
GGGTTAACACACAAAAATGC+CGG - tig0037657:725-744 None:intergenic 40.0%
! TGTTAACCCTTCGGTTTTCA+GGG + tig0037657:736-755 Msa1456650:intron 40.0%
! GACCCTTGTAATCTAGAGTT+CGG + tig0037657:771-790 Msa1456650:intron 40.0%
GGCCAAAAATTGTTTCACCT+AGG + tig0037657:814-833 Msa1456650:intron 40.0%
TTTCACCTAGGAATCGAACT+CGG + tig0037657:826-845 Msa1456650:intron 40.0%
! ACGACGAGTCATTGTGATTT+TGG - tig0037657:998-1017 None:intergenic 40.0%
! TTTTGTATAAACCGGGCTTC+GGG + tig0037657:1167-1186 Msa1456650:intron 40.0%
! TTAAATGCTCTTGGGTTGCA+TGG + tig0037657:1326-1345 Msa1456650:intron 40.0%
ATATTGTGGTATGCAAGAGC+CGG + tig0037657:1433-1452 Msa1456650:intron 40.0%
CGAGTTCGAACTCTCAAAAA+TGG - tig0037657:1618-1637 None:intergenic 40.0%
!! TTTTTGAGAGTTCGAACTCG+AGG + tig0037657:1618-1637 Msa1456650:intron 40.0%
AAGAGGAGAAGGAAACTTGA+AGG - tig0037657:1874-1893 None:intergenic 40.0%
AAGGAGTTACAAAGAGGAGA+AGG - tig0037657:1885-1904 None:intergenic 40.0%
GCAAAATGAAAAAGCGGTCA+AGG - tig0037657:2220-2239 None:intergenic 40.0%
!!! CAGGTTTCTTTTGCTGTTGA+TGG + tig0037657:2262-2281 Msa1456650:intron 40.0%
! TGTTGTCAAAGCACTTCTTG+AGG + tig0037657:2309-2328 Msa1456650:CDS 40.0%
AGCTAGGGATGTTGTATTTC+AGG + tig0037657:2643-2662 Msa1456650:intron 40.0%
ACTTGAACAGTTATTGGGAC+TGG + tig0037657:2978-2997 Msa1456650:intron 40.0%
! GCTAACCAAAAGTATGGTTC+TGG + tig0037657:3047-3066 Msa1456650:intron 40.0%
GTAGTAGCTAACAACAATCG+GGG + tig0037657:3130-3149 Msa1456650:intron 40.0%
TTTCTCACTTCCAGTCCAAT+GGG + tig0037657:3241-3260 Msa1456650:CDS 40.0%
TGAAACTATTCCCATTGGAC+TGG - tig0037657:3254-3273 None:intergenic 40.0%
CAGCTGAATAAAACCATCCT+TGG + tig0037657:3354-3373 Msa1456650:three_prime_UTR 40.0%
TTCTTTCTCAACACCAAGGA+TGG - tig0037657:3370-3389 None:intergenic 40.0%
! TTTGACACATTTTCGCAAGC+TGG + tig0037657:3528-3547 Msa1456650:three_prime_UTR 40.0%
GCTTAACGTTCGGTCTCAAA+TGG + tig0037657:149-168 Msa1456650:exon 45.0%
AAGTGGTGAAGATTGGAACG+TGG - tig0037657:228-247 None:intergenic 45.0%
TGGTGAGAAGTGGTGAAGAT+TGG - tig0037657:235-254 None:intergenic 45.0%
!!! GGTGTTTTTGGGGGATATGA+TGG + tig0037657:511-530 Msa1456650:CDS 45.0%
! GGGATATGATGGGATTGAAG+AGG + tig0037657:522-541 Msa1456650:CDS 45.0%
AAAGGGCTAAAAAGGCTTCG+AGG + tig0037657:623-642 Msa1456650:CDS 45.0%
! GTGTTAACCCTTCGGTTTTC+AGG + tig0037657:735-754 Msa1456650:intron 45.0%
! GTTAACCCTTCGGTTTTCAG+GGG + tig0037657:737-756 Msa1456650:intron 45.0%
GGCCGAACTCTAGATTACAA+GGG - tig0037657:776-795 None:intergenic 45.0%
TGGCCGAACTCTAGATTACA+AGG - tig0037657:777-796 None:intergenic 45.0%
TTCACCTAGGAATCGAACTC+GGG + tig0037657:827-846 Msa1456650:intron 45.0%
GATAAGCAATTGGGCTCAAG+TGG - tig0037657:893-912 None:intergenic 45.0%
ATATCCCTACCAACTGCTCA+CGG - tig0037657:1417-1436 None:intergenic 45.0%
!! AGCAGTTGGTAGGGATATTG+TGG + tig0037657:1419-1438 Msa1456650:intron 45.0%
TATTGTGGTATGCAAGAGCC+GGG + tig0037657:1434-1453 Msa1456650:intron 45.0%
!!! CTCGAGGTTTTTAGTCGAAC+TGG + tig0037657:1634-1653 Msa1456650:intron 45.0%
AAGCGGTCAAGGACAATTGA+AGG - tig0037657:2209-2228 None:intergenic 45.0%
TTGCAGGTCATCTGCAACAT+TGG + tig0037657:3168-3187 Msa1456650:intron 45.0%
GTTTCTCACTTCCAGTCCAA+TGG + tig0037657:3240-3259 Msa1456650:CDS 45.0%
TGTCTAGGCTATAGCACCAA+AGG - tig0037657:3292-3311 None:intergenic 45.0%
CCTATCCCCTGAAAACCGAA+GGG - tig0037657:745-764 None:intergenic 50.0%
!! CCTTCGGTTTTCAGGGGATA+GGG + tig0037657:743-762 Msa1456650:intron 50.0%
AGAACCCGAGTTCGATTCCT+AGG - tig0037657:834-853 None:intergenic 50.0%
GTGGTTAATGAGCTCCACCA+AGG - tig0037657:874-893 None:intergenic 50.0%
ATCGGAATGCAACCCTGAGT+CGG + tig0037657:1191-1210 Msa1456650:intron 50.0%
TATCCCTACCAACTGCTCAC+GGG - tig0037657:1416-1435 None:intergenic 50.0%
ATTGTGGTATGCAAGAGCCG+GGG + tig0037657:1435-1454 Msa1456650:intron 50.0%
CACCGTAGGGTGAGTTATGT+GGG + tig0037657:2888-2907 Msa1456650:intron 50.0%
CTCCCACATAACTCACCCTA+CGG - tig0037657:2893-2912 None:intergenic 50.0%
GTAGGGTGAGTTATGTGGGA+GGG + tig0037657:2892-2911 Msa1456650:intron 50.0%
CAGGTCATCTGCAACATTGG+AGG + tig0037657:3171-3190 Msa1456650:intron 50.0%
! TTTTGGCCCTGCGTGTGATA+TGG + tig0037657:3211-3230 Msa1456650:CDS 50.0%
TTTGGCCCTGCGTGTGATAT+GGG + tig0037657:3212-3231 Msa1456650:CDS 50.0%
!! CCCTTCGGTTTTCAGGGGAT+AGG + tig0037657:742-761 Msa1456650:intron 55.0%
CCCTATCCCCTGAAAACCGA+AGG - tig0037657:746-765 None:intergenic 55.0%
GTTCGGCCACGAGCTAAGTT+AGG + tig0037657:788-807 Msa1456650:intron 55.0%
GCCACGAGCTAAGTTAGGTC+CGG + tig0037657:793-812 Msa1456650:intron 55.0%
ATAAACCGGGCTTCGGGCAT+CGG + tig0037657:1173-1192 Msa1456650:intron 55.0%
TCGGAATGCAACCCTGAGTC+GGG + tig0037657:1192-1211 Msa1456650:intron 55.0%
AATGCAACCCTGAGTCGGGT+GGG + tig0037657:1196-1215 Msa1456650:intron 55.0%
! CAGGAGTTTTGCCGCTCATG+TGG - tig0037657:1223-1242 None:intergenic 55.0%
GTTTAGTCCCCGTGAGCAGT+TGG + tig0037657:1405-1424 Msa1456650:intron 55.0%
ATCCCTACCAACTGCTCACG+GGG - tig0037657:1415-1434 None:intergenic 55.0%
GACTTGCGTGATGCACCGTA+GGG + tig0037657:2875-2894 Msa1456650:intron 55.0%
GCACCGTAGGGTGAGTTATG+TGG + tig0037657:2887-2906 Msa1456650:intron 55.0%
CGTAGGGTGAGTTATGTGGG+AGG + tig0037657:2891-2910 Msa1456650:intron 55.0%
AGCTGCCCATATCACACGCA+GGG - tig0037657:3220-3239 None:intergenic 55.0%
GCCGGACCTAACTTAGCTCG+TGG - tig0037657:797-816 None:intergenic 60.0%
GAATGCAACCCTGAGTCGGG+TGG + tig0037657:1195-1214 Msa1456650:intron 60.0%
ATGTGGTCCCACCCGACTCA+GGG - tig0037657:1206-1225 None:intergenic 60.0%
AGTCCCCGTGAGCAGTTGGT+AGG + tig0037657:1409-1428 Msa1456650:intron 60.0%
! GTCCCCGTGAGCAGTTGGTA+GGG + tig0037657:1410-1429 Msa1456650:intron 60.0%
GAAATCCGGGGTTCGAACCC+CGG - tig0037657:1455-1474 None:intergenic 60.0%
GGACTTGCGTGATGCACCGT+AGG + tig0037657:2874-2893 Msa1456650:intron 60.0%
CAGCTGCCCATATCACACGC+AGG - tig0037657:3221-3240 None:intergenic 60.0%
GCATTCCGATGCCCGAAGCC+CGG - tig0037657:1181-1200 None:intergenic 65.0%
CATGTGGTCCCACCCGACTC+AGG - tig0037657:1207-1226 None:intergenic 65.0%
GTCGGGTGGGACCACATGAG+CGG + tig0037657:1209-1228 Msa1456650:intron 65.0%
AAGAGCCGGGGTTCGAACCC+CGG + tig0037657:1447-1466 Msa1456650:intron 65.0%
Chromosome Type Strat End Strand Name
tig0037657 gene 129 3604 129 ID=Msa1456650;Name=Msa1456650
tig0037657 mRNA 129 3604 129 ID=Msa1456650-mRNA-1;Parent=Msa1456650;Name=Msa1456650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=39|1|1|1|1|1|4|296|196
tig0037657 exon 129 347 129 ID=Msa1456650-mRNA-1:exon:20830;Parent=Msa1456650-mRNA-1
tig0037657 exon 469 678 469 ID=Msa1456650-mRNA-1:exon:20831;Parent=Msa1456650-mRNA-1
tig0037657 exon 2265 2330 2265 ID=Msa1456650-mRNA-1:exon:20832;Parent=Msa1456650-mRNA-1
tig0037657 exon 3174 3604 3174 ID=Msa1456650-mRNA-1:exon:20833;Parent=Msa1456650-mRNA-1
tig0037657 five_prime_UTR 129 167 129 ID=Msa1456650-mRNA-1:five_prime_utr;Parent=Msa1456650-mRNA-1
tig0037657 CDS 168 347 168 ID=Msa1456650-mRNA-1:cds;Parent=Msa1456650-mRNA-1
tig0037657 CDS 469 678 469 ID=Msa1456650-mRNA-1:cds;Parent=Msa1456650-mRNA-1
tig0037657 CDS 2265 2330 2265 ID=Msa1456650-mRNA-1:cds;Parent=Msa1456650-mRNA-1
tig0037657 CDS 3174 3308 3174 ID=Msa1456650-mRNA-1:cds;Parent=Msa1456650-mRNA-1
tig0037657 three_prime_UTR 3309 3604 3309 ID=Msa1456650-mRNA-1:three_prime_utr;Parent=Msa1456650-mRNA-1
Gene Sequence

>Msa1456650

ATGGCAGCAACAACATCAACTGCAACAACAACACAATTGATCAATCTCACGCGCTCTCCACGTTCCAATCTTCACCACTTCTCACCAAACAATGTTCACATTCTTCATCACCAACCCTTTTCTTCCAAACTCTACTACAACCATCGTTCAAATCTCAAAATCATCAATTGCAATAGCAAGCTGAATAACTCAAGTGGTGGAGAACCATATGAGATTGATGAAGGTGTTTTTGGGGGATATGATGGGATTGAAGAGGAGAGTGATGAAGATGATGCTGAGAGTAGTGTTGATTTGTTGATTAGATTCTTGCAGAGTATGTTTAAGAAAATGTCTAAAAGGGCTAAAAAGGCTTCGAGGAGTGTTTTGCCTACAGTGATATCTCCTCAACTCGTTTCTTTTGCTGTTGATGGGACTCTGCTACTTGCTACACTTTCTGTTGTCAAAGCACTTCTTGAGGTCATCTGCAACATTGGAGGCACTGTATTTGCTGCAATTTTGGCCCTGCGTGTGATATGGGCAGCTGTTTCTCACTTCCAGTCCAATGGGAATAGTTTCAATCAAGGGAACAATTCCTTTGGTGCTATAGCCTAG

Protein sequence

>Msa1456650

MAATTSTATTTQLINLTRSPRSNLHHFSPNNVHILHHQPFSSKLYYNHRSNLKIINCNSKLNNSSGGEPYEIDEGVFGGYDGIEEESDEDDAESSVDLLIRFLQSMFKKMSKRAKKASRSVLPTVISPQLVSFAVDGTLLLATLSVVKALLEVICNIGGTVFAAILALRVIWAAVSHFQSNGNSFNQGNNSFGAIA*