AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0246690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0246690 MtrunA17_Chr2g0301241 98.031 254 5 0 1 254 1 254 0.0 501
Msa0246690 MtrunA17_Chr4g0070201 74.409 254 64 1 1 254 1 253 7.02e-139 390
Msa0246690 MtrunA17_Chr3g0139681 38.947 95 56 2 159 253 3 95 4.37e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0246690 AT5G20720.1 71.094 256 69 2 1 254 1 253 9.27e-129 365
Msa0246690 AT5G20720.2 71.094 256 69 2 1 254 1 253 9.27e-129 365
Msa0246690 AT5G20720.4 71.094 256 69 2 1 254 1 253 9.27e-129 365
Msa0246690 AT5G20720.3 71.094 256 69 2 1 254 1 253 9.27e-129 365

Find 97 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTCATTACCAGCGTATT+TGG 0.227055 2_2:-28165285 None:intergenic
ATCTATCCAACAACAAATTA+AGG 0.272003 2_2:+28162434 Msa0246690:five_prime_UTR
TAAATATGTTTAGGCAAGTT+TGG 0.296841 2_2:-28162227 None:intergenic
TTTCTCAAATATTGCTCATC+TGG 0.297071 2_2:-28165548 None:intergenic
TGTCATGGCTGTACTCTCTT+AGG 0.316825 2_2:+28165352 Msa0246690:CDS
ACTATGAAAGGTATCTTTCT+TGG 0.321364 2_2:+28165677 Msa0246690:three_prime_UTR
GATTACCAAGTGATTCCTAA+TGG 0.336686 2_2:+28165416 Msa0246690:three_prime_UTR
CGATAAAGACGCATTTCTAA+TGG 0.343286 2_2:+28165625 Msa0246690:three_prime_UTR
TGCTTACCTTAATTTGTTGT+TGG 0.374195 2_2:-28162440 None:intergenic
TGTTTGGAGTAAATATGTTT+AGG 0.386534 2_2:-28162236 None:intergenic
TTGAAAACCCAGTTCCCATT+AGG 0.387555 2_2:-28165431 None:intergenic
TTGGATAGATTAGGTGAGGT+TGG 0.388732 2_2:-28162421 None:intergenic
TTCATTCTGCTCGACATGTT+AGG 0.390168 2_2:+28162652 Msa0246690:CDS
TTGAACAGTGAAACTGTAAA+TGG 0.399117 2_2:+28162548 Msa0246690:intron
AAGTGATTCCTAATGGGAAC+TGG 0.399629 2_2:+28165423 Msa0246690:three_prime_UTR
CTATCAAGCCTTTGGGTGAC+AGG 0.400365 2_2:+28163932 Msa0246690:CDS
ATTACCAAGTGATTCCTAAT+GGG 0.401600 2_2:+28165417 Msa0246690:three_prime_UTR
GTACACTGCTATCAAGCCTT+TGG 0.402510 2_2:+28163924 Msa0246690:intron
GGCTTTGTTTGAGCACTTGA+TGG 0.405445 2_2:-28164009 None:intergenic
GAACGATAGAGTTCTGATAA+AGG 0.408424 2_2:+28164356 Msa0246690:CDS
AAGCTTACTGTTCCAAATGA+AGG 0.410647 2_2:-28164873 None:intergenic
TATCAGAACTCTATCGTTCA+AGG 0.418147 2_2:-28164352 None:intergenic
ACCAAGGAGAAACCTTCATT+TGG 0.419164 2_2:+28164861 Msa0246690:CDS
TCCTGCTCGTAGGTCCTTCA+AGG 0.426073 2_2:+28162683 Msa0246690:CDS
CTATGAAAGGTATCTTTCTT+GGG 0.430830 2_2:+28165678 Msa0246690:three_prime_UTR
GAATGAAACTGAACACTTGA+TGG 0.432793 2_2:-28162636 None:intergenic
CCTTCACACTAATTTCAACT+TGG 0.433049 2_2:-28164083 None:intergenic
CCTTGATATCATCAGTTTCA+AGG 0.440736 2_2:-28164320 None:intergenic
ATACGCTGGTAATGACTTCA+AGG 0.442105 2_2:+28165289 Msa0246690:CDS
CAGGTGGTAGCAGTTGGTCC+CGG 0.442169 2_2:+28165197 Msa0246690:intron
TGGTCCCGGGCTTGTGGATG+AGG 0.443053 2_2:+28165211 Msa0246690:CDS
GCCTTCCTCATCCACAAGCC+CGG 0.445614 2_2:-28165216 None:intergenic
TCCAAATGAAGGTTTCTCCT+TGG 0.449870 2_2:-28164862 None:intergenic
AGGAGCGTTGCATCCTTTGA+AGG 0.455252 2_2:+28162606 Msa0246690:CDS
AATGACTTCAAGGGCAAAGA+TGG 0.468491 2_2:+28165299 Msa0246690:CDS
TACACTGCTATCAAGCCTTT+GGG 0.469733 2_2:+28163925 Msa0246690:CDS
CCTTGAAACTGATGATATCA+AGG 0.481354 2_2:+28164320 Msa0246690:CDS
AATTTGTTGTTGGATAGATT+AGG 0.484211 2_2:-28162430 None:intergenic
TTTGACAATCAAAGCCTTGA+AGG 0.489756 2_2:-28162697 None:intergenic
ATATATGCTGCAGATTGAAA+AGG 0.493775 2_2:+28164797 Msa0246690:intron
TTGAAGGATGATGACATTGT+TGG 0.496634 2_2:+28164294 Msa0246690:CDS
TCTGCTCGACATGTTAGGAT+TGG 0.504109 2_2:+28162657 Msa0246690:CDS
CTTGAGGAGTTCTGATGTCA+TGG 0.516147 2_2:+28165337 Msa0246690:CDS
AAACCGTTGACTGTTACTCC+TGG 0.517844 2_2:+28165245 Msa0246690:CDS
AGGTGGTAGCAGTTGGTCCC+GGG 0.520936 2_2:+28165198 Msa0246690:intron
CTATTCAAAGTATGCTGGTA+CGG 0.522458 2_2:+28164239 Msa0246690:CDS
GCCTTGAAGGACCTACGAGC+AGG 0.526587 2_2:-28162684 None:intergenic
AGCAGTTGGTCCCGGGCTTG+TGG 0.527000 2_2:+28165205 Msa0246690:CDS
GAGGTGGTTGCCGTTGGAGA+AGG 0.528875 2_2:+28164042 Msa0246690:CDS
GGTTGGAAAGTGAGATAAAG+TGG 0.537799 2_2:-28162404 None:intergenic
ATCAGAACTCTATCGTTCAA+GGG 0.538758 2_2:-28164351 None:intergenic
AAAGTATGCTGGTACGGAGG+TGG 0.542017 2_2:+28164245 Msa0246690:CDS
TTCAAAGTATGCTGGTACGG+AGG 0.553161 2_2:+28164242 Msa0246690:CDS
CTCAAATATTGCTCATCTGG+TGG 0.553558 2_2:-28165545 None:intergenic
CCCGGGCTTGTGGATGAGGA+AGG 0.557286 2_2:+28165215 Msa0246690:CDS
GAGTACAAAACTGTGTTCCC+AGG 0.559688 2_2:-28165263 None:intergenic
GTTGTCTATTCAAAGTATGC+TGG 0.560205 2_2:+28164234 Msa0246690:CDS
GGAGGTGAGGTGGTTGCCGT+TGG 0.560930 2_2:+28164036 Msa0246690:CDS
GCATCTCTAGGTACTATGAA+AGG 0.565825 2_2:+28165665 Msa0246690:three_prime_UTR
CCAAGTTGAAATTAGTGTGA+AGG 0.567424 2_2:+28164083 Msa0246690:CDS
GGTACGGAGGTGGACTTCAA+TGG 0.568064 2_2:+28164255 Msa0246690:CDS
AAGTGTCTTTCCTTCTCCAA+CGG 0.569767 2_2:-28164052 None:intergenic
CCTTCCTCATCCACAAGCCC+GGG 0.573609 2_2:-28165215 None:intergenic
GAATAGACAACTTGTGCACC+TGG 0.575907 2_2:-28164222 None:intergenic
TTCCCAGGAGTAACAGTCAA+CGG 0.579368 2_2:-28165248 None:intergenic
GTTGGAGAAGGAAAGACACT+TGG 0.579860 2_2:+28164054 Msa0246690:CDS
AACCGTTGACTGTTACTCCT+GGG 0.586139 2_2:+28165246 Msa0246690:CDS
AGGCGGTTTGTTTCTTACAG+AGG 0.589539 2_2:+28164836 Msa0246690:CDS
CAGAAGAGAAGACTCAGAGT+GGG 0.589594 2_2:+28163977 Msa0246690:CDS
ATGTCACAGGTGGTAGCAGT+TGG 0.591495 2_2:+28165191 Msa0246690:intron
TGATGGTCGAAGTCCTTCAA+AGG 0.597517 2_2:-28162619 None:intergenic
TATCAAGCCTTTGGGTGACA+GGG 0.600106 2_2:+28163933 Msa0246690:CDS
ATTGCAATACAATGGGCGCG+TGG 0.607144 2_2:+28162266 Msa0246690:five_prime_UTR
ATAAGTACCCTGTCACCCAA+AGG 0.609358 2_2:-28163940 None:intergenic
AGTTCCCATTAGGAATCACT+TGG 0.611104 2_2:-28165421 None:intergenic
GTTTCTTACAGAGGCAACCA+AGG 0.611857 2_2:+28164845 Msa0246690:CDS
AACAAAGCCTCAAGGAGGTG+AGG 0.613391 2_2:+28164023 Msa0246690:CDS
TGAAAGGTATCTTTCTTGGG+AGG 0.614000 2_2:+28165681 Msa0246690:three_prime_UTR
TTGCAATACAATGGGCGCGT+GGG 0.620666 2_2:+28162267 Msa0246690:five_prime_UTR
AGTGATTCCTAATGGGAACT+GGG 0.624061 2_2:+28165424 Msa0246690:three_prime_UTR
TATGCTGCAGATTGAAAAGG+CGG 0.624112 2_2:+28164800 Msa0246690:intron
TAGAAACTATAAAATTTCAA+CGG 0.624473 2_2:+28165575 Msa0246690:three_prime_UTR
GTTGTTGGATAGATTAGGTG+AGG 0.633489 2_2:-28162425 None:intergenic
GCAGAAGAGAAGACTCAGAG+TGG 0.644549 2_2:+28163976 Msa0246690:CDS
CATGACATCAGAACTCCTCA+AGG 0.650196 2_2:-28165336 None:intergenic
AGTGCTCAAACAAAGCCTCA+AGG 0.651229 2_2:+28164015 Msa0246690:CDS
GGATTGGTAATCCTGCTCGT+AGG 0.652074 2_2:+28162673 Msa0246690:CDS
TACGCTGGTAATGACTTCAA+GGG 0.655719 2_2:+28165290 Msa0246690:CDS
TTGGAGAAGGAAAGACACTT+GGG 0.658187 2_2:+28164055 Msa0246690:CDS
GCAACCACCTCACCTCCTTG+AGG 0.660430 2_2:-28164030 None:intergenic
AAAGCCTCAAGGAGGTGAGG+TGG 0.661356 2_2:+28164026 Msa0246690:CDS
TCTTGTCTAATAAATGACAA+AGG 0.667328 2_2:-28165512 None:intergenic
TTTCTAATGGAAACTCGATG+TGG 0.670875 2_2:+28165638 Msa0246690:three_prime_UTR
ATCACTTGGTAATCAAAACA+AGG 0.676030 2_2:-28165407 None:intergenic
GCTCAAACAAAGCCTCAAGG+AGG 0.723993 2_2:+28164018 Msa0246690:CDS
CAGCATCATCAATTTCAACG+AGG 0.726289 2_2:+28162586 Msa0246690:CDS
AGAATGAAAATAAACCTTGG+GGG 0.751739 2_2:-28162736 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGCAATATTTTTTTGTT+TGG - chr2_2:28162255-28162274 None:intergenic 15.0%
!! AAAAAAATATTGCAATACAA+TGG + chr2_2:28162258-28162277 Msa0246690:five_prime_UTR 15.0%
!! AAAAAATATTGCAATACAAT+GGG + chr2_2:28162259-28162278 Msa0246690:five_prime_UTR 15.0%
!!! TTGCTATTATAATGTTATTT+TGG + chr2_2:28162805-28162824 Msa0246690:intron 15.0%
!!! TGCTATTATAATGTTATTTT+GGG + chr2_2:28162806-28162825 Msa0246690:intron 15.0%
!!! ATCATTCTTTAATTTTTCTT+GGG + chr2_2:28164144-28164163 Msa0246690:intron 15.0%
!!! TTTATTTTGTAATTTTGATC+TGG + chr2_2:28164440-28164459 Msa0246690:intron 15.0%
!! TAGAAACTATAAAATTTCAA+CGG + chr2_2:28165575-28165594 Msa0246690:three_prime_UTR 15.0%
!! AAAAATGAATAAGATTGAGA+GGG - chr2_2:28162342-28162361 None:intergenic 20.0%
!! TAAAAATGAATAAGATTGAG+AGG - chr2_2:28162343-28162362 None:intergenic 20.0%
!!! TCTCAATCTTATTCATTTTT+AGG + chr2_2:28162342-28162361 Msa0246690:five_prime_UTR 20.0%
!!! CTCAATCTTATTCATTTTTA+GGG + chr2_2:28162343-28162362 Msa0246690:five_prime_UTR 20.0%
!! AAAGAATGAAAATAAACCTT+GGG - chr2_2:28162741-28162760 None:intergenic 20.0%
!! AAAAGAATGAAAATAAACCT+TGG - chr2_2:28162742-28162761 None:intergenic 20.0%
!!! AGGTTTATTTTCATTCTTTT+TGG + chr2_2:28162742-28162761 Msa0246690:intron 20.0%
!!! TAATGTTATTTTGGGTTAAT+TGG + chr2_2:28162814-28162833 Msa0246690:intron 20.0%
!!! AATGTTATTTTGGGTTAATT+GGG + chr2_2:28162815-28162834 Msa0246690:intron 20.0%
!!! GTCTTGAAATTATAATTTGT+TGG + chr2_2:28163016-28163035 Msa0246690:intron 20.0%
!! TGAAACAATTATTTGATTGT+GGG + chr2_2:28163142-28163161 Msa0246690:intron 20.0%
!!! TATAATTTTGATGTTGAATG+TGG + chr2_2:28163358-28163377 Msa0246690:intron 20.0%
!! ATCATAAAATTGTGAAAAGT+CGG - chr2_2:28163863-28163882 None:intergenic 20.0%
!!! GATCATTCTTTAATTTTTCT+TGG + chr2_2:28164143-28164162 Msa0246690:intron 20.0%
!! AAAAACATTGTTGTAATACT+TGG + chr2_2:28165168-28165187 Msa0246690:intron 20.0%
! TAAATATGTTTAGGCAAGTT+TGG - chr2_2:28162230-28162249 None:intergenic 25.0%
!! TGTTTGGAGTAAATATGTTT+AGG - chr2_2:28162239-28162258 None:intergenic 25.0%
!!! AATTTGTTGTTGGATAGATT+AGG - chr2_2:28162433-28162452 None:intergenic 25.0%
! ATCTATCCAACAACAAATTA+AGG + chr2_2:28162434-28162453 Msa0246690:five_prime_UTR 25.0%
! AACACACAAAAACAATAACA+AGG - chr2_2:28162530-28162549 None:intergenic 25.0%
! AAGAATGAAAATAAACCTTG+GGG - chr2_2:28162740-28162759 None:intergenic 25.0%
!! AGTGTTATTGATATTGAAGA+AGG + chr2_2:28162891-28162910 Msa0246690:intron 25.0%
!!! ATTGAAGAAGGTTGTTATTT+TGG + chr2_2:28162903-28162922 Msa0246690:intron 25.0%
!!! TTATTTTGGTTAGAAGAAAG+TGG + chr2_2:28162917-28162936 Msa0246690:intron 25.0%
! GTGAAACAATTATTTGATTG+TGG + chr2_2:28163141-28163160 Msa0246690:intron 25.0%
! TGAGAGAGTAATTTGATATT+TGG + chr2_2:28163203-28163222 Msa0246690:intron 25.0%
! TTTGATATTTGGTAAATTCG+AGG + chr2_2:28163214-28163233 Msa0246690:intron 25.0%
!! AAGCAAAATAACACCATTTT+GGG - chr2_2:28163268-28163287 None:intergenic 25.0%
!! TAAGCAAAATAACACCATTT+TGG - chr2_2:28163269-28163288 None:intergenic 25.0%
!! ATAATGAGTAGCATTTTACT+CGG + chr2_2:28163317-28163336 Msa0246690:intron 25.0%
! AACTGTGCATCAAAATTAAA+GGG - chr2_2:28163395-28163414 None:intergenic 25.0%
! AAACTGTGCATCAAAATTAA+AGG - chr2_2:28163396-28163415 None:intergenic 25.0%
! TTCAATGTAATTACAAGTGT+CGG - chr2_2:28163534-28163553 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+TGG + chr2_2:28163565-28163584 Msa0246690:intron 25.0%
! AATTAAAACAAAAAGACCTC+TGG - chr2_2:28163634-28163653 None:intergenic 25.0%
! AAATCGCATAATTGTTGTAT+TGG + chr2_2:28163813-28163832 Msa0246690:intron 25.0%
!! CAGGGTACTTATAAAAATAA+AGG + chr2_2:28163951-28163970 Msa0246690:CDS 25.0%
! AATTAAAGAATGATCATCGA+AGG - chr2_2:28164138-28164157 None:intergenic 25.0%
!!! TTTAATTTTTCTTGGGAAGA+AGG + chr2_2:28164151-28164170 Msa0246690:intron 25.0%
!! TTAATTTTTCTTGGGAAGAA+GGG + chr2_2:28164152-28164171 Msa0246690:intron 25.0%
!! ATATAAGCAAAACTCTAAAG+AGG - chr2_2:28164387-28164406 None:intergenic 25.0%
!! AGTTTTGCTTATATTCTTGT+TGG + chr2_2:28164393-28164412 Msa0246690:intron 25.0%
! AGTGATGAAAACAAAATCAA+CGG + chr2_2:28164498-28164517 Msa0246690:intron 25.0%
!! AACATGTTTTCAAACAAAGA+AGG - chr2_2:28164909-28164928 None:intergenic 25.0%
! ATTCATGAGAAATAGGATAA+TGG - chr2_2:28165121-28165140 None:intergenic 25.0%
!! TATCCTATTTCTCATGAATA+TGG + chr2_2:28165122-28165141 Msa0246690:intron 25.0%
! TCTTGTCTAATAAATGACAA+AGG - chr2_2:28165515-28165534 None:intergenic 25.0%
!! TGCTTACCTTAATTTGTTGT+TGG - chr2_2:28162443-28162462 None:intergenic 30.0%
TTGAACAGTGAAACTGTAAA+TGG + chr2_2:28162548-28162567 Msa0246690:intron 30.0%
AGAATGAAAATAAACCTTGG+GGG - chr2_2:28162739-28162758 None:intergenic 30.0%
! ATTTGAGTAAACAAGCGTTT+TGG + chr2_2:28162993-28163012 Msa0246690:intron 30.0%
! TTTGAGTAAACAAGCGTTTT+GGG + chr2_2:28162994-28163013 Msa0246690:intron 30.0%
AAATAATTGTTTCACTCCGT+TGG - chr2_2:28163136-28163155 None:intergenic 30.0%
TTTGGTAAATTCGAGGTTAT+TGG + chr2_2:28163221-28163240 Msa0246690:intron 30.0%
TACAATTTCAAGACCCAAAA+TGG + chr2_2:28163252-28163271 Msa0246690:intron 30.0%
! TAATGAGTAGCATTTTACTC+GGG + chr2_2:28163318-28163337 Msa0246690:intron 30.0%
! TGCTGTTTATTTATAACCAG+AGG + chr2_2:28163443-28163462 Msa0246690:intron 30.0%
!!! TGAAAAGCATCTTCTTTTGA+AGG + chr2_2:28164278-28164297 Msa0246690:CDS 30.0%
!!! TGAGATGTCTTACTTTTTAG+AGG + chr2_2:28164595-28164614 Msa0246690:intron 30.0%
AGTTGCACAAAATATGACAT+GGG - chr2_2:28164682-28164701 None:intergenic 30.0%
AAGTTGCACAAAATATGACA+TGG - chr2_2:28164683-28164702 None:intergenic 30.0%
! GTGCAACTTTATTTCTCATA+CGG + chr2_2:28164694-28164713 Msa0246690:intron 30.0%
! TGCAACTTTATTTCTCATAC+GGG + chr2_2:28164695-28164714 Msa0246690:intron 30.0%
ATATATGCTGCAGATTGAAA+AGG + chr2_2:28164797-28164816 Msa0246690:intron 30.0%
TTAAACCTTAAGTGGATGTT+AGG - chr2_2:28164940-28164959 None:intergenic 30.0%
TGCTACATTTAAACCTTAAG+TGG - chr2_2:28164948-28164967 None:intergenic 30.0%
! TCACATTGACTATAGAGATA+AGG - chr2_2:28165011-28165030 None:intergenic 30.0%
TGCTGAACATATTATGGTTA+TGG - chr2_2:28165081-28165100 None:intergenic 30.0%
TAAACGTGCTGAACATATTA+TGG - chr2_2:28165087-28165106 None:intergenic 30.0%
GAACCATATTCATGAGAAAT+AGG - chr2_2:28165128-28165147 None:intergenic 30.0%
! ATCACTTGGTAATCAAAACA+AGG - chr2_2:28165410-28165429 None:intergenic 30.0%
ATTACCAAGTGATTCCTAAT+GGG + chr2_2:28165417-28165436 Msa0246690:three_prime_UTR 30.0%
TTTCTCAAATATTGCTCATC+TGG - chr2_2:28165551-28165570 None:intergenic 30.0%
!! ACTATGAAAGGTATCTTTCT+TGG + chr2_2:28165677-28165696 Msa0246690:three_prime_UTR 30.0%
!! CTATGAAAGGTATCTTTCTT+GGG + chr2_2:28165678-28165697 Msa0246690:three_prime_UTR 30.0%
!! TTGTTGTTACAGAGAGGTTT+TGG - chr2_2:28162481-28162500 None:intergenic 35.0%
!! TTCTTGTTGTTGTTACAGAG+AGG - chr2_2:28162487-28162506 None:intergenic 35.0%
GAATGAAACTGAACACTTGA+TGG - chr2_2:28162639-28162658 None:intergenic 35.0%
TTTGACAATCAAAGCCTTGA+AGG - chr2_2:28162700-28162719 None:intergenic 35.0%
TCTTCTTGATTGTGCATTTG+TGG + chr2_2:28162946-28162965 Msa0246690:intron 35.0%
TTTACTCGGGCATATGTTTA+AGG + chr2_2:28163331-28163350 Msa0246690:intron 35.0%
TCGCATAATTGTTAACCACT+TGG + chr2_2:28163679-28163698 Msa0246690:intron 35.0%
CGCATAATTGTTAACCACTT+GGG + chr2_2:28163680-28163699 Msa0246690:intron 35.0%
TAATTGTTAACCACTTGGGT+TGG + chr2_2:28163684-28163703 Msa0246690:intron 35.0%
TCGCATAATTGTTGTATTGG+AGG + chr2_2:28163816-28163835 Msa0246690:intron 35.0%
ATTGTGAAAAGTCGGAACTT+TGG - chr2_2:28163855-28163874 None:intergenic 35.0%
CCTTCACACTAATTTCAACT+TGG - chr2_2:28164086-28164105 None:intergenic 35.0%
! CCAAGTTGAAATTAGTGTGA+AGG + chr2_2:28164083-28164102 Msa0246690:CDS 35.0%
GTTGTCTATTCAAAGTATGC+TGG + chr2_2:28164234-28164253 Msa0246690:CDS 35.0%
CTATTCAAAGTATGCTGGTA+CGG + chr2_2:28164239-28164258 Msa0246690:CDS 35.0%
TTGAAGGATGATGACATTGT+TGG + chr2_2:28164294-28164313 Msa0246690:CDS 35.0%
CCTTGATATCATCAGTTTCA+AGG - chr2_2:28164323-28164342 None:intergenic 35.0%
CCTTGAAACTGATGATATCA+AGG + chr2_2:28164320-28164339 Msa0246690:CDS 35.0%
ATCAGAACTCTATCGTTCAA+GGG - chr2_2:28164354-28164373 None:intergenic 35.0%
TATCAGAACTCTATCGTTCA+AGG - chr2_2:28164355-28164374 None:intergenic 35.0%
! GAACGATAGAGTTCTGATAA+AGG + chr2_2:28164356-28164375 Msa0246690:CDS 35.0%
TATTCTTGTTGGATCCAAGT+TGG + chr2_2:28164404-28164423 Msa0246690:intron 35.0%
CGAAATTGAACCACTCAATA+TGG + chr2_2:28164468-28164487 Msa0246690:intron 35.0%
ACTCACTTATCCATATTGAG+TGG - chr2_2:28164481-28164500 None:intergenic 35.0%
TGCAAATTATCTGAACGTCA+AGG + chr2_2:28164641-28164660 Msa0246690:intron 35.0%
! TTTATTTCTCATACGGGAGT+AGG + chr2_2:28164701-28164720 Msa0246690:intron 35.0%
AGTAGGATTCAAAGACACTA+TGG + chr2_2:28164718-28164737 Msa0246690:intron 35.0%
GCATATATTAAACCAGTCAG+TGG - chr2_2:28164785-28164804 None:intergenic 35.0%
AAGCTTACTGTTCCAAATGA+AGG - chr2_2:28164876-28164895 None:intergenic 35.0%
! TCAAACAAAGAAGGCATAAC+AGG - chr2_2:28164900-28164919 None:intergenic 35.0%
GTTTACCTAACATCCACTTA+AGG + chr2_2:28164932-28164951 Msa0246690:intron 35.0%
GTTAATCAATGTCACTCGTT+AGG + chr2_2:28165040-28165059 Msa0246690:intron 35.0%
TTGTAATACTTGGATGTCAC+AGG + chr2_2:28165178-28165197 Msa0246690:intron 35.0%
!! GTTTTGAGTACATTACCTTG+AGG + chr2_2:28165321-28165340 Msa0246690:CDS 35.0%
GATTACCAAGTGATTCCTAA+TGG + chr2_2:28165416-28165435 Msa0246690:three_prime_UTR 35.0%
CGATAAAGACGCATTTCTAA+TGG + chr2_2:28165625-28165644 Msa0246690:three_prime_UTR 35.0%
TTTCTAATGGAAACTCGATG+TGG + chr2_2:28165638-28165657 Msa0246690:three_prime_UTR 35.0%
GGTTGGAAAGTGAGATAAAG+TGG - chr2_2:28162407-28162426 None:intergenic 40.0%
TTGGATAGATTAGGTGAGGT+TGG - chr2_2:28162424-28162443 None:intergenic 40.0%
GTTGTTGGATAGATTAGGTG+AGG - chr2_2:28162428-28162447 None:intergenic 40.0%
CAGCATCATCAATTTCAACG+AGG + chr2_2:28162586-28162605 Msa0246690:CDS 40.0%
TTCATTCTGCTCGACATGTT+AGG + chr2_2:28162652-28162671 Msa0246690:CDS 40.0%
GATATACACACCATCTCCAA+CGG + chr2_2:28163117-28163136 Msa0246690:intron 40.0%
TTGATTGTGGGTTCTCTGAA+TGG + chr2_2:28163154-28163173 Msa0246690:intron 40.0%
TATGAAGCACAGACACTACT+CGG + chr2_2:28163467-28163486 Msa0246690:intron 40.0%
!! GTAATTACAAGTGTCGGTGT+CGG - chr2_2:28163528-28163547 None:intergenic 40.0%
CACGGATACAAACACAAACA+CGG - chr2_2:28163602-28163621 None:intergenic 40.0%
GGAAAATCGAATTCCTTGAG+AGG - chr2_2:28163745-28163764 None:intergenic 40.0%
! TCAAGGAATTCGATTTTCCC+CGG + chr2_2:28163746-28163765 Msa0246690:intron 40.0%
TACACTGCTATCAAGCCTTT+GGG + chr2_2:28163925-28163944 Msa0246690:CDS 40.0%
AAGTGTCTTTCCTTCTCCAA+CGG - chr2_2:28164055-28164074 None:intergenic 40.0%
TTGGAGAAGGAAAGACACTT+GGG + chr2_2:28164055-28164074 Msa0246690:CDS 40.0%
!!! TGTGTTTTGTTTGTACAGCC+AGG + chr2_2:28164204-28164223 Msa0246690:intron 40.0%
CACGCATGGACAACAATTTA+TGG + chr2_2:28164532-28164551 Msa0246690:intron 40.0%
AGACCTCAACAAAACACAAG+AGG - chr2_2:28164744-28164763 None:intergenic 40.0%
TATGCTGCAGATTGAAAAGG+CGG + chr2_2:28164800-28164819 Msa0246690:intron 40.0%
AAGGCGGAAGAAAAAACTTC+AGG + chr2_2:28164816-28164835 Msa0246690:CDS 40.0%
ACCAAGGAGAAACCTTCATT+TGG + chr2_2:28164861-28164880 Msa0246690:CDS 40.0%
TCCAAATGAAGGTTTCTCCT+TGG - chr2_2:28164865-28164884 None:intergenic 40.0%
TAATACTTGGATGTCACAGG+TGG + chr2_2:28165181-28165200 Msa0246690:intron 40.0%
! GTTTTGTACTCCAAATACGC+TGG + chr2_2:28165275-28165294 Msa0246690:CDS 40.0%
GAAGTCATTACCAGCGTATT+TGG - chr2_2:28165288-28165307 None:intergenic 40.0%
! ATACGCTGGTAATGACTTCA+AGG + chr2_2:28165289-28165308 Msa0246690:CDS 40.0%
! TACGCTGGTAATGACTTCAA+GGG + chr2_2:28165290-28165309 Msa0246690:CDS 40.0%
AATGACTTCAAGGGCAAAGA+TGG + chr2_2:28165299-28165318 Msa0246690:CDS 40.0%
AGTTCCCATTAGGAATCACT+TGG - chr2_2:28165424-28165443 None:intergenic 40.0%
AAGTGATTCCTAATGGGAAC+TGG + chr2_2:28165423-28165442 Msa0246690:three_prime_UTR 40.0%
AGTGATTCCTAATGGGAACT+GGG + chr2_2:28165424-28165443 Msa0246690:three_prime_UTR 40.0%
TTGAAAACCCAGTTCCCATT+AGG - chr2_2:28165434-28165453 None:intergenic 40.0%
CTCAAATATTGCTCATCTGG+TGG - chr2_2:28165548-28165567 None:intergenic 40.0%
GCATCTCTAGGTACTATGAA+AGG + chr2_2:28165665-28165684 Msa0246690:three_prime_UTR 40.0%
!! TGAAAGGTATCTTTCTTGGG+AGG + chr2_2:28165681-28165700 Msa0246690:three_prime_UTR 40.0%
TGATGGTCGAAGTCCTTCAA+AGG - chr2_2:28162622-28162641 None:intergenic 45.0%
TCTGCTCGACATGTTAGGAT+TGG + chr2_2:28162657-28162676 Msa0246690:CDS 45.0%
TTGTTTCACTCCGTTGGAGA+TGG - chr2_2:28163130-28163149 None:intergenic 45.0%
GCGATCTTTGTGTAGCAGTT+TGG - chr2_2:28163663-28163682 None:intergenic 45.0%
!! ATTTTCCCCGGTGCCAATTT+CGG + chr2_2:28163758-28163777 Msa0246690:intron 45.0%
! TTGATAGCAGTGTACTGCAC+AGG - chr2_2:28163919-28163938 None:intergenic 45.0%
GTACACTGCTATCAAGCCTT+TGG + chr2_2:28163924-28163943 Msa0246690:intron 45.0%
TATCAAGCCTTTGGGTGACA+GGG + chr2_2:28163933-28163952 Msa0246690:CDS 45.0%
ATAAGTACCCTGTCACCCAA+AGG - chr2_2:28163943-28163962 None:intergenic 45.0%
CAGAAGAGAAGACTCAGAGT+GGG + chr2_2:28163977-28163996 Msa0246690:CDS 45.0%
!! GGCTTTGTTTGAGCACTTGA+TGG - chr2_2:28164012-28164031 None:intergenic 45.0%
AGTGCTCAAACAAAGCCTCA+AGG + chr2_2:28164015-28164034 Msa0246690:CDS 45.0%
GTTGGAGAAGGAAAGACACT+TGG + chr2_2:28164054-28164073 Msa0246690:CDS 45.0%
GAATAGACAACTTGTGCACC+TGG - chr2_2:28164225-28164244 None:intergenic 45.0%
TTCAAAGTATGCTGGTACGG+AGG + chr2_2:28164242-28164261 Msa0246690:CDS 45.0%
!! TGGCCTCTTGTGTTTTGTTG+AGG + chr2_2:28164738-28164757 Msa0246690:intron 45.0%
! GCTTTTAGATAGCCACTGAC+TGG + chr2_2:28164770-28164789 Msa0246690:intron 45.0%
GCGGAAGAAAAAACTTCAGG+CGG + chr2_2:28164819-28164838 Msa0246690:CDS 45.0%
! AGGCGGTTTGTTTCTTACAG+AGG + chr2_2:28164836-28164855 Msa0246690:CDS 45.0%
GTTTCTTACAGAGGCAACCA+AGG + chr2_2:28164845-28164864 Msa0246690:CDS 45.0%
! AAACCGTTGACTGTTACTCC+TGG + chr2_2:28165245-28165264 Msa0246690:CDS 45.0%
! AACCGTTGACTGTTACTCCT+GGG + chr2_2:28165246-28165265 Msa0246690:CDS 45.0%
TTCCCAGGAGTAACAGTCAA+CGG - chr2_2:28165251-28165270 None:intergenic 45.0%
GAGTACAAAACTGTGTTCCC+AGG - chr2_2:28165266-28165285 None:intergenic 45.0%
CATGACATCAGAACTCCTCA+AGG - chr2_2:28165339-28165358 None:intergenic 45.0%
! CTTGAGGAGTTCTGATGTCA+TGG + chr2_2:28165337-28165356 Msa0246690:CDS 45.0%
TGTCATGGCTGTACTCTCTT+AGG + chr2_2:28165352-28165371 Msa0246690:CDS 45.0%
!! GAACTGGGTTTTCAAGCATC+TGG + chr2_2:28165439-28165458 Msa0246690:three_prime_UTR 45.0%
!! CGATGTGGTTTTGCATCTCT+AGG + chr2_2:28165653-28165672 Msa0246690:three_prime_UTR 45.0%
!! TCAAATTAAATTAAATAAAA+TGG - chr2_2:28162872-28162891 None:intergenic 5.0%
ATTGCAATACAATGGGCGCG+TGG + chr2_2:28162266-28162285 Msa0246690:five_prime_UTR 50.0%
TTGCAATACAATGGGCGCGT+GGG + chr2_2:28162267-28162286 Msa0246690:five_prime_UTR 50.0%
!! AGGAGCGTTGCATCCTTTGA+AGG + chr2_2:28162606-28162625 Msa0246690:CDS 50.0%
! GGATTGGTAATCCTGCTCGT+AGG + chr2_2:28162673-28162692 Msa0246690:CDS 50.0%
TGTCTGTGCTTCATAGCCTC+TGG - chr2_2:28163462-28163481 None:intergenic 50.0%
GCACAGACACTACTCGGATT+AGG + chr2_2:28163473-28163492 Msa0246690:intron 50.0%
! TACTCGGATTAGGCGTGTCT+CGG + chr2_2:28163483-28163502 Msa0246690:intron 50.0%
ATCCGTGCTTCATAGACCAG+AGG + chr2_2:28163615-28163634 Msa0246690:intron 50.0%
GACCTCTGGTCTATGAAGCA+CGG - chr2_2:28163620-28163639 None:intergenic 50.0%
! CTTGAGAGGAGCATACTCCA+AGG - chr2_2:28163731-28163750 None:intergenic 50.0%
CTTGGAGTATGCTCCTCTCA+AGG + chr2_2:28163729-28163748 Msa0246690:intron 50.0%
CTCAACTAGCCCACCGAAAT+TGG - chr2_2:28163774-28163793 None:intergenic 50.0%
CTATCAAGCCTTTGGGTGAC+AGG + chr2_2:28163932-28163951 Msa0246690:CDS 50.0%
GCAGAAGAGAAGACTCAGAG+TGG + chr2_2:28163976-28163995 Msa0246690:CDS 50.0%
GCTCAAACAAAGCCTCAAGG+AGG + chr2_2:28164018-28164037 Msa0246690:CDS 50.0%
AACAAAGCCTCAAGGAGGTG+AGG + chr2_2:28164023-28164042 Msa0246690:CDS 50.0%
AAAGTATGCTGGTACGGAGG+TGG + chr2_2:28164245-28164264 Msa0246690:CDS 50.0%
! GTTGGATCCAAGTTGGCGAA+TGG + chr2_2:28164411-28164430 Msa0246690:intron 50.0%
! CGGTTGATATTGCACACGCA+TGG + chr2_2:28164518-28164537 Msa0246690:intron 50.0%
ATGTCACAGGTGGTAGCAGT+TGG + chr2_2:28165191-28165210 Msa0246690:intron 50.0%
TCCTGCTCGTAGGTCCTTCA+AGG + chr2_2:28162683-28162702 Msa0246690:CDS 55.0%
AACCTTGGGGGCAACAACAG+TGG - chr2_2:28162727-28162746 None:intergenic 55.0%
!! GTTAACCACTTGGGTTGGCC+TGG + chr2_2:28163689-28163708 Msa0246690:intron 55.0%
TAGCCCACCGAAATTGGCAC+CGG - chr2_2:28163768-28163787 None:intergenic 55.0%
AAAGCCTCAAGGAGGTGAGG+TGG + chr2_2:28164026-28164045 Msa0246690:CDS 55.0%
! GGTACGGAGGTGGACTTCAA+TGG + chr2_2:28164255-28164274 Msa0246690:CDS 55.0%
! GGATCCAAGTTGGCGAATGG+CGG + chr2_2:28164414-28164433 Msa0246690:intron 55.0%
GCCTTGAAGGACCTACGAGC+AGG - chr2_2:28162687-28162706 None:intergenic 60.0%
CTTGGGGGCAACAACAGTGG+CGG - chr2_2:28162724-28162743 None:intergenic 60.0%
!! AACCACTTGGGTTGGCCTGG+TGG + chr2_2:28163692-28163711 Msa0246690:intron 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG + chr2_2:28163698-28163717 Msa0246690:intron 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG + chr2_2:28163703-28163722 Msa0246690:intron 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG + chr2_2:28163704-28163723 Msa0246690:intron 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG + chr2_2:28163711-28163730 Msa0246690:intron 60.0%
! TTCCCCGGTGCCAATTTCGG+TGG + chr2_2:28163761-28163780 Msa0246690:intron 60.0%
! TCCCCGGTGCCAATTTCGGT+GGG + chr2_2:28163762-28163781 Msa0246690:intron 60.0%
AGCCCACCGAAATTGGCACC+GGG - chr2_2:28163767-28163786 None:intergenic 60.0%
GCAACCACCTCACCTCCTTG+AGG - chr2_2:28164033-28164052 None:intergenic 60.0%
GAGGTGGTTGCCGTTGGAGA+AGG + chr2_2:28164042-28164061 Msa0246690:CDS 60.0%
! TCCAAGTTGGCGAATGGCGG+TGG + chr2_2:28164417-28164436 Msa0246690:intron 60.0%
ACCACCGCCATTCGCCAACT+TGG - chr2_2:28164421-28164440 None:intergenic 60.0%
CAGGTGGTAGCAGTTGGTCC+CGG + chr2_2:28165197-28165216 Msa0246690:intron 60.0%
AGGTGGTAGCAGTTGGTCCC+GGG + chr2_2:28165198-28165217 Msa0246690:intron 60.0%
CCTTCCTCATCCACAAGCCC+GGG - chr2_2:28165218-28165237 None:intergenic 60.0%
GCCTTCCTCATCCACAAGCC+CGG - chr2_2:28165219-28165238 None:intergenic 60.0%
CGCCACTGTTGTTGCCCCCA+AGG + chr2_2:28162722-28162741 Msa0246690:CDS 65.0%
CACCACCAGGCCAACCCAAG+TGG - chr2_2:28163697-28163716 None:intergenic 65.0%
GGTCCCAAGCCAACACCACC+AGG - chr2_2:28163710-28163729 None:intergenic 65.0%
GCCCACCGAAATTGGCACCG+GGG - chr2_2:28163766-28163785 None:intergenic 65.0%
GGAGGTGAGGTGGTTGCCGT+TGG + chr2_2:28164036-28164055 Msa0246690:CDS 65.0%
AGCAGTTGGTCCCGGGCTTG+TGG + chr2_2:28165205-28165224 Msa0246690:CDS 65.0%
TGGTCCCGGGCTTGTGGATG+AGG + chr2_2:28165211-28165230 Msa0246690:CDS 65.0%
CCCGGGCTTGTGGATGAGGA+AGG + chr2_2:28165215-28165234 Msa0246690:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 28162227 28165751 28162227 ID=Msa0246690;Name=Msa0246690
chr2_2 mRNA 28162227 28165751 28162227 ID=Msa0246690-mRNA-1;Parent=Msa0246690;Name=Msa0246690-mRNA-1;_AED=0.05;_eAED=0.05;_QI=240|1|1|1|0.8|0.66|6|378|254
chr2_2 exon 28162227 28162455 28162227 ID=Msa0246690-mRNA-1:exon:10137;Parent=Msa0246690-mRNA-1
chr2_2 exon 28162556 28162743 28162556 ID=Msa0246690-mRNA-1:exon:10138;Parent=Msa0246690-mRNA-1
chr2_2 exon 28163925 28164104 28163925 ID=Msa0246690-mRNA-1:exon:10139;Parent=Msa0246690-mRNA-1
chr2_2 exon 28164222 28164377 28164222 ID=Msa0246690-mRNA-1:exon:10140;Parent=Msa0246690-mRNA-1
chr2_2 exon 28164810 28164887 28164810 ID=Msa0246690-mRNA-1:exon:10141;Parent=Msa0246690-mRNA-1
chr2_2 exon 28165200 28165751 28165200 ID=Msa0246690-mRNA-1:exon:10142;Parent=Msa0246690-mRNA-1
chr2_2 five_prime_UTR 28162227 28162455 28162227 ID=Msa0246690-mRNA-1:five_prime_utr;Parent=Msa0246690-mRNA-1
chr2_2 five_prime_UTR 28162556 28162566 28162556 ID=Msa0246690-mRNA-1:five_prime_utr;Parent=Msa0246690-mRNA-1
chr2_2 CDS 28162567 28162743 28162567 ID=Msa0246690-mRNA-1:cds;Parent=Msa0246690-mRNA-1
chr2_2 CDS 28163925 28164104 28163925 ID=Msa0246690-mRNA-1:cds;Parent=Msa0246690-mRNA-1
chr2_2 CDS 28164222 28164377 28164222 ID=Msa0246690-mRNA-1:cds;Parent=Msa0246690-mRNA-1
chr2_2 CDS 28164810 28164887 28164810 ID=Msa0246690-mRNA-1:cds;Parent=Msa0246690-mRNA-1
chr2_2 CDS 28165200 28165373 28165200 ID=Msa0246690-mRNA-1:cds;Parent=Msa0246690-mRNA-1
chr2_2 three_prime_UTR 28165374 28165751 28165374 ID=Msa0246690-mRNA-1:three_prime_utr;Parent=Msa0246690-mRNA-1
Gene Sequence

>Msa0246690

ATGGCTTCTTCTCAGTTGACAGCATCATCAATTTCAACGAGGAGCGTTGCATCCTTTGAAGGACTTCGACCATCAAGTGTTCAGTTTCATTCTGCTCGACATGTTAGGATTGGTAATCCTGCTCGTAGGTCCTTCAAGGCTTTGATTGTCAAAGCCGCCACTGTTGTTGCCCCCAAGTACACTGCTATCAAGCCTTTGGGTGACAGGGTACTTATAAAAATAAAGGAAGCAGAAGAGAAGACTCAGAGTGGGATTTTGCTTCCATCAAGTGCTCAAACAAAGCCTCAAGGAGGTGAGGTGGTTGCCGTTGGAGAAGGAAAGACACTTGGGAAGAACCAAGTTGAAATTAGTGTGAAGCCAGGTGCACAAGTTGTCTATTCAAAGTATGCTGGTACGGAGGTGGACTTCAATGGTGAAAAGCATCTTCTTTTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGATATCAAGGATCTTAAACCCTTGAACGATAGAGTTCTGATAAAGATTGAAAAGGCGGAAGAAAAAACTTCAGGCGGTTTGTTTCTTACAGAGGCAACCAAGGAGAAACCTTCATTTGGAACAGTGGTAGCAGTTGGTCCCGGGCTTGTGGATGAGGAAGGCAATAGAAAACCGTTGACTGTTACTCCTGGGAACACAGTTTTGTACTCCAAATACGCTGGTAATGACTTCAAGGGCAAAGATGGTTTTGAGTACATTACCTTGAGGAGTTCTGATGTCATGGCTGTACTCTCTTAG

Protein sequence

>Msa0246690

MASSQLTASSISTRSVASFEGLRPSSVQFHSARHVRIGNPARRSFKALIVKAATVVAPKYTAIKPLGDRVLIKIKEAEEKTQSGILLPSSAQTKPQGGEVVAVGEGKTLGKNQVEISVKPGAQVVYSKYAGTEVDFNGEKHLLLKDDDIVGILETDDIKDLKPLNDRVLIKIEKAEEKTSGGLFLTEATKEKPSFGTVVAVGPGLVDEEGNRKPLTVTPGNTVLYSKYAGNDFKGKDGFEYITLRSSDVMAVLS*