AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0135980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135980 MtrunA17_Chr1g0207001 97.727 132 2 1 1 132 1 131 2.57e-92 262
Msa0135980 MtrunA17_Chr3g0079331 93.182 132 8 1 1 132 1 131 2.13e-87 250
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0135980 AT1G49975.1 61.940 134 44 3 1 132 1 129 1.70e-50 157

Find 47 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACATGTTCATTATCCTTT+AGG 0.222495 1_3:+67772825 Msa0135980:five_prime_UTR
AGCACCACCAACATGGAATT+TGG 0.289275 1_3:+67772998 Msa0135980:CDS
GAAGAGGCGATGAGTTCTAT+AGG 0.348824 1_3:+67772875 Msa0135980:exon
GATTACTTTGAGTTCGTAGA+AGG 0.353863 1_3:+67773509 Msa0135980:CDS
TATAGGGCAAACCATGTTAA+TGG 0.362210 1_3:+67772892 Msa0135980:CDS
TCTGTTGGGAAATTCGGATA+TGG 0.383992 1_3:+67773679 Msa0135980:three_prime_UTR
ATGGTCAACTAAAGAAGATT+AGG 0.393112 1_3:+67773791 Msa0135980:three_prime_UTR
GCTTAATAAACTTATCCTAA+AGG 0.408244 1_3:-67772840 Msa0135990:three_prime_UTR
CAGAAAAGGGTATCCTTGAT+TGG 0.408398 1_3:+67773570 Msa0135980:CDS
GAAGCTTTCAGAAGCAGAAA+AGG 0.433331 1_3:+67773556 Msa0135980:CDS
CCTTCCAAATTCCATGTTGG+TGG 0.438290 1_3:-67773002 Msa0135990:three_prime_UTR
TTGGTGGTGCTTCTCAAAGT+TGG 0.441638 1_3:-67772986 Msa0135990:three_prime_UTR
GTTTGCAAGGAAAGGAAGAG+GGG 0.447267 1_3:+67773534 Msa0135980:CDS
TTTGCCTAGTAAGATATGTA+TGG 0.447614 1_3:+67773772 Msa0135980:three_prime_UTR
TGGTGGTGCTTCTCAAAGTT+GGG 0.449042 1_3:-67772985 Msa0135990:three_prime_UTR
AGGGTCTTGCGTTGCGGTTG+CGG 0.451542 1_3:-67773053 Msa0135990:three_prime_UTR
GGGTTTGCAAGGAAAGGAAG+AGG 0.455002 1_3:+67773532 Msa0135980:CDS
TTGACCATACATATCTTACT+AGG 0.463262 1_3:-67773776 Msa0135990:intron
CATATGAAGCACAATGTAGT+AGG 0.466639 1_3:+67772799 None:intergenic
TGTTAGCTTTAAGCCAATCA+AGG 0.469309 1_3:-67773583 Msa0135990:intron
AAGAGGCGATGAGTTCTATA+GGG 0.479187 1_3:+67772876 Msa0135980:exon
AGAAGCAATGTCCTTGACTC+AGG 0.482163 1_3:-67773073 Msa0135990:three_prime_UTR
GGTTTGCAAGGAAAGGAAGA+GGG 0.496880 1_3:+67773533 Msa0135980:CDS
TAGATTACCAAATAGAAAAG+AGG 0.499650 1_3:+67773742 Msa0135980:three_prime_UTR
TTATTACAAGCGTAATTACA+AGG 0.507139 1_3:+67773487 Msa0135980:CDS
GGTACAGTTTCTTTCTTGCA+AGG 0.512639 1_3:+67773700 Msa0135980:three_prime_UTR
TCTCCTTCCAAATTCCATGT+TGG 0.526459 1_3:-67773005 Msa0135990:three_prime_UTR
GTTAATGGCACTAACAGTTA+CGG 0.549686 1_3:+67772907 Msa0135980:CDS
AACTGTTAGTGCCATTAACA+TGG 0.549756 1_3:-67772903 Msa0135990:three_prime_UTR
GTATGCATCATCCAATGTGC+AGG 0.549946 1_3:+67772937 Msa0135980:CDS
TGACTCAGGGTCTTGCGTTG+CGG 0.557938 1_3:-67773059 Msa0135990:three_prime_UTR
TACTTTGAGTTCGTAGAAGG+GGG 0.574786 1_3:+67773512 Msa0135980:CDS
AACATGGAATTTGGAAGGAG+AGG 0.586422 1_3:+67773007 Msa0135980:CDS
ATTATGAACTGCCTGCACAT+TGG 0.588435 1_3:-67772948 Msa0135990:three_prime_UTR
AGATTACCAAATAGAAAAGA+GGG 0.588795 1_3:+67773743 Msa0135980:three_prime_UTR
ATTACTTTGAGTTCGTAGAA+GGG 0.593520 1_3:+67773510 Msa0135980:CDS
AAGCTTTCAGAAGCAGAAAA+GGG 0.600223 1_3:+67773557 Msa0135980:CDS
GAAGAAAACAGAGGAAAACA+AGG 0.601206 1_3:+67773358 Msa0135980:CDS
TTACTTTGAGTTCGTAGAAG+GGG 0.603502 1_3:+67773511 Msa0135980:CDS
TACCAAATAGAAAAGAGGGA+TGG 0.606414 1_3:+67773747 Msa0135980:three_prime_UTR
CCTAAAGGATAATGAACATG+TGG 0.616421 1_3:-67772825 None:intergenic
GAAGCAATGTCCTTGACTCA+GGG 0.617035 1_3:-67773072 Msa0135990:three_prime_UTR
CCACCAACATGGAATTTGGA+AGG 0.619705 1_3:+67773002 Msa0135980:CDS
TGCGGTTGCGGCGATAACAG+TGG 0.623047 1_3:-67773041 Msa0135990:three_prime_UTR
CAACGCAAGACCCTGAGTCA+AGG 0.623179 1_3:+67773062 Msa0135980:CDS
TTTGAGAAGCACCACCAACA+TGG 0.627251 1_3:+67772991 Msa0135980:CDS
AGAATATTTGAAGAAAACAG+AGG 0.670181 1_3:+67773349 Msa0135980:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCAAAATTTACAAGCT+AGG - chr1_3:67773660-67773679 Msa0135990:intron 20.0%
!!! TGTAAATTTTGATTTTCTGT+TGG + chr1_3:67773664-67773683 Msa0135980:three_prime_UTR 20.0%
!!! GTAAATTTTGATTTTCTGTT+GGG + chr1_3:67773665-67773684 Msa0135980:three_prime_UTR 20.0%
!! AAAATCAAAATTTACAAGCT+AGG - chr1_3:67773660-67773679 Msa0135990:intron 20.0%
!!! TGTAAATTTTGATTTTCTGT+TGG + chr1_3:67773664-67773683 Msa0135980:three_prime_UTR 20.0%
!!! GTAAATTTTGATTTTCTGTT+GGG + chr1_3:67773665-67773684 Msa0135980:three_prime_UTR 20.0%
! GCTTAATAAACTTATCCTAA+AGG - chr1_3:67772843-67772862 Msa0135990:three_prime_UTR 25.0%
! AGAATATTTGAAGAAAACAG+AGG + chr1_3:67773349-67773368 Msa0135980:intron 25.0%
! TTATTACAAGCGTAATTACA+AGG + chr1_3:67773487-67773506 Msa0135980:CDS 25.0%
! TAGATTACCAAATAGAAAAG+AGG + chr1_3:67773742-67773761 Msa0135980:three_prime_UTR 25.0%
! AGATTACCAAATAGAAAAGA+GGG + chr1_3:67773743-67773762 Msa0135980:three_prime_UTR 25.0%
! GCTTAATAAACTTATCCTAA+AGG - chr1_3:67772843-67772862 Msa0135990:three_prime_UTR 25.0%
! AGAATATTTGAAGAAAACAG+AGG + chr1_3:67773349-67773368 Msa0135980:intron 25.0%
! TTATTACAAGCGTAATTACA+AGG + chr1_3:67773487-67773506 Msa0135980:CDS 25.0%
! TAGATTACCAAATAGAAAAG+AGG + chr1_3:67773742-67773761 Msa0135980:three_prime_UTR 25.0%
! AGATTACCAAATAGAAAAGA+GGG + chr1_3:67773743-67773762 Msa0135980:three_prime_UTR 25.0%
AAGCAAACTAAAAAGAGAAG+AGG + chr1_3:67772859-67772878 Msa0135980:five_prime_UTR 30.0%
!! TTTAATCACAGTTTTGTGTG+TGG + chr1_3:67773450-67773469 Msa0135980:intron 30.0%
! ATTACTTTGAGTTCGTAGAA+GGG + chr1_3:67773510-67773529 Msa0135980:CDS 30.0%
ATCAAAATTTACAAGCTAGG+TGG - chr1_3:67773657-67773676 Msa0135990:intron 30.0%
! TGATTTTCTGTTGGGAAATT+CGG + chr1_3:67773673-67773692 Msa0135980:three_prime_UTR 30.0%
TTTGCCTAGTAAGATATGTA+TGG + chr1_3:67773772-67773791 Msa0135980:three_prime_UTR 30.0%
TTGACCATACATATCTTACT+AGG - chr1_3:67773779-67773798 Msa0135990:intron 30.0%
ATGGTCAACTAAAGAAGATT+AGG + chr1_3:67773791-67773810 Msa0135980:three_prime_UTR 30.0%
AAGCAAACTAAAAAGAGAAG+AGG + chr1_3:67772859-67772878 Msa0135980:five_prime_UTR 30.0%
!! TTTAATCACAGTTTTGTGTG+TGG + chr1_3:67773450-67773469 Msa0135980:intron 30.0%
! ATTACTTTGAGTTCGTAGAA+GGG + chr1_3:67773510-67773529 Msa0135980:CDS 30.0%
ATCAAAATTTACAAGCTAGG+TGG - chr1_3:67773657-67773676 Msa0135990:intron 30.0%
! TGATTTTCTGTTGGGAAATT+CGG + chr1_3:67773673-67773692 Msa0135980:three_prime_UTR 30.0%
TTTGCCTAGTAAGATATGTA+TGG + chr1_3:67773772-67773791 Msa0135980:three_prime_UTR 30.0%
TTGACCATACATATCTTACT+AGG - chr1_3:67773779-67773798 Msa0135990:intron 30.0%
ATGGTCAACTAAAGAAGATT+AGG + chr1_3:67773791-67773810 Msa0135980:three_prime_UTR 30.0%
CCTAAAGGATAATGAACATG+TGG - chr1_3:67772828-67772847 None:intergenic 35.0%
CCACATGTTCATTATCCTTT+AGG + chr1_3:67772825-67772844 Msa0135980:five_prime_UTR 35.0%
TATAGGGCAAACCATGTTAA+TGG + chr1_3:67772892-67772911 Msa0135980:CDS 35.0%
! AACTGTTAGTGCCATTAACA+TGG - chr1_3:67772906-67772925 Msa0135990:three_prime_UTR 35.0%
GTTAATGGCACTAACAGTTA+CGG + chr1_3:67772907-67772926 Msa0135980:CDS 35.0%
TAATCAAATGTGACTGTGTC+AGG - chr1_3:67773195-67773214 Msa0135990:intron 35.0%
!!! CGACATGAACATGTTTTTAG+TGG + chr1_3:67773281-67773300 Msa0135980:intron 35.0%
GAAGAAAACAGAGGAAAACA+AGG + chr1_3:67773358-67773377 Msa0135980:CDS 35.0%
AAAATGACAGAGAGGTAAGT+AGG + chr1_3:67773384-67773403 Msa0135980:intron 35.0%
AAATGACAGAGAGGTAAGTA+GGG + chr1_3:67773385-67773404 Msa0135980:intron 35.0%
! GATTACTTTGAGTTCGTAGA+AGG + chr1_3:67773509-67773528 Msa0135980:CDS 35.0%
! TTACTTTGAGTTCGTAGAAG+GGG + chr1_3:67773511-67773530 Msa0135980:CDS 35.0%
AAGCTTTCAGAAGCAGAAAA+GGG + chr1_3:67773557-67773576 Msa0135980:CDS 35.0%
!! TGTTAGCTTTAAGCCAATCA+AGG - chr1_3:67773586-67773605 Msa0135990:intron 35.0%
TACCAAATAGAAAAGAGGGA+TGG + chr1_3:67773747-67773766 Msa0135980:three_prime_UTR 35.0%
! AACCATCCCTCTTTTCTATT+TGG - chr1_3:67773752-67773771 Msa0135990:intron 35.0%
CCTAAAGGATAATGAACATG+TGG - chr1_3:67772828-67772847 None:intergenic 35.0%
CCACATGTTCATTATCCTTT+AGG + chr1_3:67772825-67772844 Msa0135980:five_prime_UTR 35.0%
TATAGGGCAAACCATGTTAA+TGG + chr1_3:67772892-67772911 Msa0135980:CDS 35.0%
! AACTGTTAGTGCCATTAACA+TGG - chr1_3:67772906-67772925 Msa0135990:three_prime_UTR 35.0%
GTTAATGGCACTAACAGTTA+CGG + chr1_3:67772907-67772926 Msa0135980:CDS 35.0%
TAATCAAATGTGACTGTGTC+AGG - chr1_3:67773195-67773214 Msa0135990:intron 35.0%
!!! CGACATGAACATGTTTTTAG+TGG + chr1_3:67773281-67773300 Msa0135980:intron 35.0%
GAAGAAAACAGAGGAAAACA+AGG + chr1_3:67773358-67773377 Msa0135980:CDS 35.0%
AAAATGACAGAGAGGTAAGT+AGG + chr1_3:67773384-67773403 Msa0135980:intron 35.0%
AAATGACAGAGAGGTAAGTA+GGG + chr1_3:67773385-67773404 Msa0135980:intron 35.0%
! GATTACTTTGAGTTCGTAGA+AGG + chr1_3:67773509-67773528 Msa0135980:CDS 35.0%
! TTACTTTGAGTTCGTAGAAG+GGG + chr1_3:67773511-67773530 Msa0135980:CDS 35.0%
AAGCTTTCAGAAGCAGAAAA+GGG + chr1_3:67773557-67773576 Msa0135980:CDS 35.0%
!! TGTTAGCTTTAAGCCAATCA+AGG - chr1_3:67773586-67773605 Msa0135990:intron 35.0%
TACCAAATAGAAAAGAGGGA+TGG + chr1_3:67773747-67773766 Msa0135980:three_prime_UTR 35.0%
! AACCATCCCTCTTTTCTATT+TGG - chr1_3:67773752-67773771 Msa0135990:intron 35.0%
AAGAGGCGATGAGTTCTATA+GGG + chr1_3:67772876-67772895 Msa0135980:exon 40.0%
ATTATGAACTGCCTGCACAT+TGG - chr1_3:67772951-67772970 Msa0135990:three_prime_UTR 40.0%
TCTCCTTCCAAATTCCATGT+TGG - chr1_3:67773008-67773027 Msa0135990:three_prime_UTR 40.0%
AACATGGAATTTGGAAGGAG+AGG + chr1_3:67773007-67773026 Msa0135980:CDS 40.0%
! AGAAGTGATGACGCTACATA+GGG - chr1_3:67773141-67773160 Msa0135990:three_prime_UTR 40.0%
CAAGGAGAAAAATGACAGAG+AGG + chr1_3:67773376-67773395 Msa0135980:CDS 40.0%
AATGACAGAGAGGTAAGTAG+GGG + chr1_3:67773386-67773405 Msa0135980:intron 40.0%
! TACTTTGAGTTCGTAGAAGG+GGG + chr1_3:67773512-67773531 Msa0135980:CDS 40.0%
GAAGCTTTCAGAAGCAGAAA+AGG + chr1_3:67773556-67773575 Msa0135980:CDS 40.0%
!! CAGAAAAGGGTATCCTTGAT+TGG + chr1_3:67773570-67773589 Msa0135980:CDS 40.0%
TCTGTTGGGAAATTCGGATA+TGG + chr1_3:67773679-67773698 Msa0135980:three_prime_UTR 40.0%
GGTACAGTTTCTTTCTTGCA+AGG + chr1_3:67773700-67773719 Msa0135980:three_prime_UTR 40.0%
AAGAGGCGATGAGTTCTATA+GGG + chr1_3:67772876-67772895 Msa0135980:exon 40.0%
ATTATGAACTGCCTGCACAT+TGG - chr1_3:67772951-67772970 Msa0135990:three_prime_UTR 40.0%
TCTCCTTCCAAATTCCATGT+TGG - chr1_3:67773008-67773027 Msa0135990:three_prime_UTR 40.0%
AACATGGAATTTGGAAGGAG+AGG + chr1_3:67773007-67773026 Msa0135980:CDS 40.0%
! AGAAGTGATGACGCTACATA+GGG - chr1_3:67773141-67773160 Msa0135990:three_prime_UTR 40.0%
CAAGGAGAAAAATGACAGAG+AGG + chr1_3:67773376-67773395 Msa0135980:CDS 40.0%
AATGACAGAGAGGTAAGTAG+GGG + chr1_3:67773386-67773405 Msa0135980:intron 40.0%
! TACTTTGAGTTCGTAGAAGG+GGG + chr1_3:67773512-67773531 Msa0135980:CDS 40.0%
GAAGCTTTCAGAAGCAGAAA+AGG + chr1_3:67773556-67773575 Msa0135980:CDS 40.0%
!! CAGAAAAGGGTATCCTTGAT+TGG + chr1_3:67773570-67773589 Msa0135980:CDS 40.0%
TCTGTTGGGAAATTCGGATA+TGG + chr1_3:67773679-67773698 Msa0135980:three_prime_UTR 40.0%
GGTACAGTTTCTTTCTTGCA+AGG + chr1_3:67773700-67773719 Msa0135980:three_prime_UTR 40.0%
GAAGAGGCGATGAGTTCTAT+AGG + chr1_3:67772875-67772894 Msa0135980:exon 45.0%
GTATGCATCATCCAATGTGC+AGG + chr1_3:67772937-67772956 Msa0135980:CDS 45.0%
! TGGTGGTGCTTCTCAAAGTT+GGG - chr1_3:67772988-67773007 Msa0135990:three_prime_UTR 45.0%
!! TTGGTGGTGCTTCTCAAAGT+TGG - chr1_3:67772989-67773008 Msa0135990:three_prime_UTR 45.0%
!! TTTGAGAAGCACCACCAACA+TGG + chr1_3:67772991-67773010 Msa0135980:CDS 45.0%
AGCACCACCAACATGGAATT+TGG + chr1_3:67772998-67773017 Msa0135980:CDS 45.0%
CCTTCCAAATTCCATGTTGG+TGG - chr1_3:67773005-67773024 Msa0135990:three_prime_UTR 45.0%
CCACCAACATGGAATTTGGA+AGG + chr1_3:67773002-67773021 Msa0135980:CDS 45.0%
GAAGCAATGTCCTTGACTCA+GGG - chr1_3:67773075-67773094 Msa0135990:three_prime_UTR 45.0%
AGAAGCAATGTCCTTGACTC+AGG - chr1_3:67773076-67773095 Msa0135990:three_prime_UTR 45.0%
! CAGAAGTGATGACGCTACAT+AGG - chr1_3:67773142-67773161 Msa0135990:three_prime_UTR 45.0%
CTTCTGAATGTATGCGTGTC+TGG + chr1_3:67773156-67773175 Msa0135980:intron 45.0%
TGACTGTGTCAGGTCAATGT+CGG - chr1_3:67773185-67773204 Msa0135990:intron 45.0%
TCAGCATCGTGTTCTCTCAT+AGG + chr1_3:67773253-67773272 Msa0135980:intron 45.0%
!! ACAGTTTTGTGTGTGGCAGA+GGG + chr1_3:67773457-67773476 Msa0135980:intron 45.0%
GGTTTGCAAGGAAAGGAAGA+GGG + chr1_3:67773533-67773552 Msa0135980:CDS 45.0%
GTTTGCAAGGAAAGGAAGAG+GGG + chr1_3:67773534-67773553 Msa0135980:CDS 45.0%
GAAGAGGCGATGAGTTCTAT+AGG + chr1_3:67772875-67772894 Msa0135980:exon 45.0%
GTATGCATCATCCAATGTGC+AGG + chr1_3:67772937-67772956 Msa0135980:CDS 45.0%
! TGGTGGTGCTTCTCAAAGTT+GGG - chr1_3:67772988-67773007 Msa0135990:three_prime_UTR 45.0%
!! TTGGTGGTGCTTCTCAAAGT+TGG - chr1_3:67772989-67773008 Msa0135990:three_prime_UTR 45.0%
!! TTTGAGAAGCACCACCAACA+TGG + chr1_3:67772991-67773010 Msa0135980:CDS 45.0%
AGCACCACCAACATGGAATT+TGG + chr1_3:67772998-67773017 Msa0135980:CDS 45.0%
CCTTCCAAATTCCATGTTGG+TGG - chr1_3:67773005-67773024 Msa0135990:three_prime_UTR 45.0%
CCACCAACATGGAATTTGGA+AGG + chr1_3:67773002-67773021 Msa0135980:CDS 45.0%
GAAGCAATGTCCTTGACTCA+GGG - chr1_3:67773075-67773094 Msa0135990:three_prime_UTR 45.0%
AGAAGCAATGTCCTTGACTC+AGG - chr1_3:67773076-67773095 Msa0135990:three_prime_UTR 45.0%
! CAGAAGTGATGACGCTACAT+AGG - chr1_3:67773142-67773161 Msa0135990:three_prime_UTR 45.0%
CTTCTGAATGTATGCGTGTC+TGG + chr1_3:67773156-67773175 Msa0135980:intron 45.0%
TGACTGTGTCAGGTCAATGT+CGG - chr1_3:67773185-67773204 Msa0135990:intron 45.0%
TCAGCATCGTGTTCTCTCAT+AGG + chr1_3:67773253-67773272 Msa0135980:intron 45.0%
!! ACAGTTTTGTGTGTGGCAGA+GGG + chr1_3:67773457-67773476 Msa0135980:intron 45.0%
GGTTTGCAAGGAAAGGAAGA+GGG + chr1_3:67773533-67773552 Msa0135980:CDS 45.0%
GTTTGCAAGGAAAGGAAGAG+GGG + chr1_3:67773534-67773553 Msa0135980:CDS 45.0%
!! CACAGTTTTGTGTGTGGCAG+AGG + chr1_3:67773456-67773475 Msa0135980:intron 50.0%
TTCGTAGAAGGGGGTTTGCA+AGG + chr1_3:67773521-67773540 Msa0135980:CDS 50.0%
AGAAGGGGGTTTGCAAGGAA+AGG + chr1_3:67773526-67773545 Msa0135980:CDS 50.0%
GGGTTTGCAAGGAAAGGAAG+AGG + chr1_3:67773532-67773551 Msa0135980:CDS 50.0%
!! CACAGTTTTGTGTGTGGCAG+AGG + chr1_3:67773456-67773475 Msa0135980:intron 50.0%
TTCGTAGAAGGGGGTTTGCA+AGG + chr1_3:67773521-67773540 Msa0135980:CDS 50.0%
AGAAGGGGGTTTGCAAGGAA+AGG + chr1_3:67773526-67773545 Msa0135980:CDS 50.0%
GGGTTTGCAAGGAAAGGAAG+AGG + chr1_3:67773532-67773551 Msa0135980:CDS 50.0%
TGACTCAGGGTCTTGCGTTG+CGG - chr1_3:67773062-67773081 Msa0135990:three_prime_UTR 55.0%
CAACGCAAGACCCTGAGTCA+AGG + chr1_3:67773062-67773081 Msa0135980:CDS 55.0%
TGACTCAGGGTCTTGCGTTG+CGG - chr1_3:67773062-67773081 Msa0135990:three_prime_UTR 55.0%
CAACGCAAGACCCTGAGTCA+AGG + chr1_3:67773062-67773081 Msa0135980:CDS 55.0%
TGCGGTTGCGGCGATAACAG+TGG - chr1_3:67773044-67773063 Msa0135990:three_prime_UTR 60.0%
AGGGTCTTGCGTTGCGGTTG+CGG - chr1_3:67773056-67773075 Msa0135990:three_prime_UTR 60.0%
TGCGGTTGCGGCGATAACAG+TGG - chr1_3:67773044-67773063 Msa0135990:three_prime_UTR 60.0%
AGGGTCTTGCGTTGCGGTTG+CGG - chr1_3:67773056-67773075 Msa0135990:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 67772814 67773830 67772814 ID=Msa0135980;Name=Msa0135980
chr1_3 mRNA 67772814 67773830 67772814 ID=Msa0135980-mRNA-1;Parent=Msa0135980;Name=Msa0135980-mRNA-1;_AED=0.24;_eAED=0.24;_QI=70|1|1|1|0.66|0.5|4|184|132
chr1_3 exon 67772814 67773100 67772814 ID=Msa0135980-mRNA-1:exon:23284;Parent=Msa0135980-mRNA-1
chr1_3 exon 67773351 67773397 67773351 ID=Msa0135980-mRNA-1:exon:23285;Parent=Msa0135980-mRNA-1
chr1_3 exon 67773476 67773625 67773476 ID=Msa0135980-mRNA-1:exon:23286;Parent=Msa0135980-mRNA-1
chr1_3 exon 67773662 67773830 67773662 ID=Msa0135980-mRNA-1:exon:23287;Parent=Msa0135980-mRNA-1
chr1_3 five_prime_UTR 67772814 67772883 67772814 ID=Msa0135980-mRNA-1:five_prime_utr;Parent=Msa0135980-mRNA-1
chr1_3 CDS 67772884 67773100 67772884 ID=Msa0135980-mRNA-1:cds;Parent=Msa0135980-mRNA-1
chr1_3 CDS 67773351 67773397 67773351 ID=Msa0135980-mRNA-1:cds;Parent=Msa0135980-mRNA-1
chr1_3 CDS 67773476 67773610 67773476 ID=Msa0135980-mRNA-1:cds;Parent=Msa0135980-mRNA-1
chr1_3 three_prime_UTR 67773611 67773625 67773611 ID=Msa0135980-mRNA-1:three_prime_utr;Parent=Msa0135980-mRNA-1
chr1_3 three_prime_UTR 67773662 67773830 67773662 ID=Msa0135980-mRNA-1:three_prime_utr;Parent=Msa0135980-mRNA-1
Gene Sequence

>Msa0135980

ATGAGTTCTATAGGGCAAACCATGTTAATGGCACTAACAGTTACGGTAAACAAGTATGCATCATCCAATGTGCAGGCAGTTCATAATAGAAAACAAGCAAACCCAACTTTGAGAAGCACCACCAACATGGAATTTGGAAGGAGAGGACTTGTCTTATCCACTGTTATCGCCGCAACCGCAACGCAAGACCCTGAGTCAAGGACATTGCTTCTTCAAAAATATTTGAAGAAAACAGAGGAAAACAAGGAGAAAAATGACAGAGAGAGGGTTGATAGTTATTACAAGCGTAATTACAAGGATTACTTTGAGTTCGTAGAAGGGGGTTTGCAAGGAAAGGAAGAGGGGAAGCTTTCAGAAGCAGAAAAGGGTATCCTTGATTGGCTTAAAGCTAACAAGTGA

Protein sequence

>Msa0135980

MSSIGQTMLMALTVTVNKYASSNVQAVHNRKQANPTLRSTTNMEFGRRGLVLSTVIAATATQDPESRTLLLQKYLKKTEENKEKNDRERVDSYYKRNYKDYFEFVEGGLQGKEEGKLSEAEKGILDWLKANK*