AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0257310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257310 MtrunA17_Chr2g0319281 98.261 230 4 0 1 230 1 230 3.13e-170 468
Msa0257310 MtrunA17_Chr5g0417771 29.358 109 77 0 104 212 141 249 1.08e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0257310 AT3G01440.1 55.804 224 93 3 1 223 1 219 1.54e-83 248
Msa0257310 AT4G21280.1 25.957 235 149 4 1 223 1 222 5.13e-19 82.8
Msa0257310 AT4G21280.2 25.847 236 149 5 1 223 1 223 2.84e-18 80.9
Msa0257310 AT4G05180.2 27.684 177 124 2 50 223 54 229 1.36e-14 70.9
Msa0257310 AT4G05180.1 27.684 177 124 2 50 223 54 229 1.36e-14 70.9
Msa0257310 AT1G14150.1 28.346 127 91 0 95 221 61 187 4.32e-13 65.9
Msa0257310 AT1G14150.2 31.250 96 66 0 98 193 64 159 2.73e-11 60.5

Find 42 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAGGTTCTTTGTGAATT+TGG 0.097088 2_2:+53047237 None:intergenic
TACTACTTGTCCTGTCTTAA+AGG 0.141076 2_2:+53047221 None:intergenic
TAGCTAAGGATAATGGATTT+TGG 0.177277 2_2:-53047071 Msa0257310:CDS
TTTGTTTCTCTAGTTCTTAC+AGG 0.255049 2_2:-53047117 Msa0257310:CDS
CAAGTAGTAGTTGGATTTCT+TGG 0.273988 2_2:-53047207 Msa0257310:CDS
GAGTAGCTTCTTCACCATTA+TGG 0.285901 2_2:-53047319 Msa0257310:exon
TTTGGAACAAGGCATGTAAT+TGG 0.288970 2_2:+53047255 None:intergenic
AAACTTTACATGGCGAATAT+TGG 0.290067 2_2:-53046279 Msa0257310:CDS
CTATTAGTGACAGTTGGTTC+TGG 0.310416 2_2:+53047033 None:intergenic
GTGACAGTTGGTTCTGGAAT+AGG 0.317646 2_2:+53047039 None:intergenic
ATTTCACTAGCTAAGGATAA+TGG 0.333626 2_2:-53047078 Msa0257310:CDS
TGAAAGTAGACTTGAGTCTT+AGG 0.346421 2_2:+53046157 None:intergenic
TGTAATTGGAGTTAAAGTTT+TGG 0.348907 2_2:+53047269 None:intergenic
AATTGCTGCTTATCTTCAGC+TGG 0.415937 2_2:+53046099 None:intergenic
ACTCCATGCAAATTTGTTAG+AGG 0.418986 2_2:+53047294 None:intergenic
GACAGCTTGAAGAAGCTTCA+AGG 0.421927 2_2:-53045773 Msa0257310:intron
AAGACACACTTAACTATGTT+AGG 0.425767 2_2:-53046185 Msa0257310:CDS
GATTGTGTTGATTCAAGATA+AGG 0.436387 2_2:-53045597 Msa0257310:three_prime_UTR
ATGGCGAATATTGGAGCAAA+AGG 0.440394 2_2:-53046270 Msa0257310:CDS
ATTTGTTAGAGGAGCCATAA+TGG 0.451258 2_2:+53047305 None:intergenic
GATATTGCGAATGAGAAAAC+GGG 0.451665 2_2:-53046324 Msa0257310:CDS
AAGACAGGACAAGTAGTAGT+TGG 0.458371 2_2:-53047216 Msa0257310:CDS
AGATATTGCGAATGAGAAAA+CGG 0.487470 2_2:-53046325 Msa0257310:CDS
ATCTTACTATTAGTGACAGT+TGG 0.488173 2_2:+53047027 None:intergenic
TAGCACTAGCACTTCCCAAA+TGG 0.498901 2_2:-53047415 Msa0257310:five_prime_UTR
TCCACTGAGTGGCACTAGAA+AGG 0.513605 2_2:+53047443 None:intergenic
TGAGAAGATTTCACTAGCTA+AGG 0.517657 2_2:-53047085 Msa0257310:CDS
TGCTTAAAGATGTCATGGAC+AGG 0.522204 2_2:-53045701 Msa0257310:CDS
TGCATTTGATCTTCTTGCAA+TGG 0.523001 2_2:-53046223 Msa0257310:CDS
TATTAAGAAGAAACTTTACA+TGG 0.528232 2_2:-53046289 Msa0257310:CDS
TCACAAAGAACCTTTAAGAC+AGG 0.530035 2_2:-53047231 Msa0257310:CDS
ATTGCTGCTTATCTTCAGCT+GGG 0.551798 2_2:+53046100 None:intergenic
TTTGGGAAGTGCTAGTGCTA+TGG 0.552026 2_2:+53047418 None:intergenic
TAAGCAGCAATTAACTGATG+TGG 0.578245 2_2:-53046088 Msa0257310:CDS
AGTTATGCTTAAAGATGTCA+TGG 0.580022 2_2:-53045706 Msa0257310:CDS
GCTCCTCTAACAAATTTGCA+TGG 0.591211 2_2:-53047297 Msa0257310:CDS
TTCTTTGTGAATTTGGAACA+AGG 0.606312 2_2:+53047244 None:intergenic
ACACACTTAACTATGTTAGG+AGG 0.615664 2_2:-53046182 Msa0257310:CDS
TCCTTTCTAGTGCCACTCAG+TGG 0.641696 2_2:-53047444 Msa0257310:five_prime_UTR
GTGCTATGGTGTCCACTGAG+TGG 0.645765 2_2:+53047432 None:intergenic
ATAGCATTTATCTATCTACA+AGG 0.649496 2_2:+53045565 None:intergenic
ATATTGCGAATGAGAAAACG+GGG 0.750300 2_2:-53046323 Msa0257310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAGATAATTCATTAAATTTT+TGG + chr2_2:53045573-53045592 None:intergenic 10.0%
!! TTAATAATAAACAAATGTAA+TGG + chr2_2:53046278-53046297 None:intergenic 10.0%
!!! TAGATAATTCATTAAATTTT+TGG + chr2_2:53045573-53045592 None:intergenic 10.0%
!! TTAATAATAAACAAATGTAA+TGG + chr2_2:53046278-53046297 None:intergenic 10.0%
!! AAATATTAATTGTACTATCA+TGG - chr2_2:53046142-53046161 Msa0257310:CDS 15.0%
!! TTATTAATAAACAAATGCAA+TGG - chr2_2:53046189-53046208 Msa0257310:CDS 15.0%
!! TTTGTTTATTATTAAATCGA+TGG - chr2_2:53046283-53046302 Msa0257310:CDS 15.0%
!! ATATTCTATTATTCAAACTT+AGG + chr2_2:53046457-53046476 None:intergenic 15.0%
!!! ATTGTTTGATAATTTTGAAA+AGG - chr2_2:53046882-53046901 Msa0257310:intron 15.0%
!! ATTCACATAATATTAAATTG+CGG + chr2_2:53047110-53047129 None:intergenic 15.0%
!! AAATATTAATTGTACTATCA+TGG - chr2_2:53046142-53046161 Msa0257310:CDS 15.0%
!! TTATTAATAAACAAATGCAA+TGG - chr2_2:53046189-53046208 Msa0257310:CDS 15.0%
!! TTTGTTTATTATTAAATCGA+TGG - chr2_2:53046283-53046302 Msa0257310:CDS 15.0%
!! ATATTCTATTATTCAAACTT+AGG + chr2_2:53046457-53046476 None:intergenic 15.0%
!!! ATTGTTTGATAATTTTGAAA+AGG - chr2_2:53046882-53046901 Msa0257310:intron 15.0%
!! ATTCACATAATATTAAATTG+CGG + chr2_2:53047110-53047129 None:intergenic 15.0%
!! TATAGCTAATGAATTTACAT+TGG - chr2_2:53045946-53045965 Msa0257310:intron 20.0%
!!! TTTTATGTTTCAATTGACAT+TGG - chr2_2:53046036-53046055 Msa0257310:intron 20.0%
!! TTTATGTTTCAATTGACATT+GGG - chr2_2:53046037-53046056 Msa0257310:intron 20.0%
!! TATAATTAACTTCATCATGA+TGG - chr2_2:53046307-53046326 Msa0257310:CDS 20.0%
!! CAATGTAAATGATGATTATA+TGG - chr2_2:53046590-53046609 Msa0257310:intron 20.0%
!! TATTAAGAAGAAACTTTACA+TGG - chr2_2:53046651-53046670 Msa0257310:intron 20.0%
!! AATATTATGTGAATAGATGT+TGG - chr2_2:53047116-53047135 Msa0257310:CDS 20.0%
!! TATAGCTAATGAATTTACAT+TGG - chr2_2:53045946-53045965 Msa0257310:intron 20.0%
!!! TTTTATGTTTCAATTGACAT+TGG - chr2_2:53046036-53046055 Msa0257310:intron 20.0%
!! TTTATGTTTCAATTGACATT+GGG - chr2_2:53046037-53046056 Msa0257310:intron 20.0%
!! TATAATTAACTTCATCATGA+TGG - chr2_2:53046307-53046326 Msa0257310:CDS 20.0%
!! CAATGTAAATGATGATTATA+TGG - chr2_2:53046590-53046609 Msa0257310:intron 20.0%
!! TATTAAGAAGAAACTTTACA+TGG - chr2_2:53046651-53046670 Msa0257310:intron 20.0%
!! AATATTATGTGAATAGATGT+TGG - chr2_2:53047116-53047135 Msa0257310:CDS 20.0%
!! TTTTTGTGACATATCCATTT+GGG + chr2_2:53045542-53045561 None:intergenic 25.0%
!!! TTTTTTGTGACATATCCATT+TGG + chr2_2:53045543-53045562 None:intergenic 25.0%
!! TGTAATTGGAGTTAAAGTTT+TGG + chr2_2:53045674-53045693 None:intergenic 25.0%
! TTAAAGGTTCTTTGTGAATT+TGG + chr2_2:53045706-53045725 None:intergenic 25.0%
! GTTATGATTGAAATTTAGCA+TGG - chr2_2:53046110-53046129 Msa0257310:CDS 25.0%
! TATGTTATAGTCCAATTTAC+AGG + chr2_2:53046411-53046430 None:intergenic 25.0%
!! CAATATTTTATCACAGAGTT+CGG + chr2_2:53046510-53046529 None:intergenic 25.0%
!!! TATCTGTTTACTTTTGAACT+AGG - chr2_2:53046554-53046573 Msa0257310:intron 25.0%
!!! ATCTGTTTACTTTTGAACTA+GGG - chr2_2:53046555-53046574 Msa0257310:intron 25.0%
!!! GTATGCTCTTTTTTAAATTG+CGG - chr2_2:53046904-53046923 Msa0257310:intron 25.0%
!! CATATTTGTCTGCAATATTT+TGG + chr2_2:53046957-53046976 None:intergenic 25.0%
! CAAAATATTGCAGACAAATA+TGG - chr2_2:53046955-53046974 Msa0257310:intron 25.0%
! ATAGCATTTATCTATCTACA+AGG + chr2_2:53047378-53047397 None:intergenic 25.0%
!! TTTTTGTGACATATCCATTT+GGG + chr2_2:53045542-53045561 None:intergenic 25.0%
!!! TTTTTTGTGACATATCCATT+TGG + chr2_2:53045543-53045562 None:intergenic 25.0%
!! TGTAATTGGAGTTAAAGTTT+TGG + chr2_2:53045674-53045693 None:intergenic 25.0%
! TTAAAGGTTCTTTGTGAATT+TGG + chr2_2:53045706-53045725 None:intergenic 25.0%
! GTTATGATTGAAATTTAGCA+TGG - chr2_2:53046110-53046129 Msa0257310:CDS 25.0%
! TATGTTATAGTCCAATTTAC+AGG + chr2_2:53046411-53046430 None:intergenic 25.0%
!! CAATATTTTATCACAGAGTT+CGG + chr2_2:53046510-53046529 None:intergenic 25.0%
!!! TATCTGTTTACTTTTGAACT+AGG - chr2_2:53046554-53046573 Msa0257310:intron 25.0%
!!! ATCTGTTTACTTTTGAACTA+GGG - chr2_2:53046555-53046574 Msa0257310:intron 25.0%
!!! GTATGCTCTTTTTTAAATTG+CGG - chr2_2:53046904-53046923 Msa0257310:intron 25.0%
!! CATATTTGTCTGCAATATTT+TGG + chr2_2:53046957-53046976 None:intergenic 25.0%
! CAAAATATTGCAGACAAATA+TGG - chr2_2:53046955-53046974 Msa0257310:intron 25.0%
! ATAGCATTTATCTATCTACA+AGG + chr2_2:53047378-53047397 None:intergenic 25.0%
! TTCTTTGTGAATTTGGAACA+AGG + chr2_2:53045699-53045718 None:intergenic 30.0%
!! TTTGTTTCTCTAGTTCTTAC+AGG - chr2_2:53045823-53045842 Msa0257310:intron 30.0%
ATTTCACTAGCTAAGGATAA+TGG - chr2_2:53045862-53045881 Msa0257310:intron 30.0%
!!! TAGCTAAGGATAATGGATTT+TGG - chr2_2:53045869-53045888 Msa0257310:intron 30.0%
!!! GATAATGGATTTTGGATTGA+TGG - chr2_2:53045877-53045896 Msa0257310:intron 30.0%
ATCTTACTATTAGTGACAGT+TGG + chr2_2:53045916-53045935 None:intergenic 30.0%
TACCTATTAGTGAAGTACAA+TGG - chr2_2:53046230-53046249 Msa0257310:CDS 30.0%
AGATATTGCGAATGAGAAAA+CGG - chr2_2:53046615-53046634 Msa0257310:intron 30.0%
AAACTTTACATGGCGAATAT+TGG - chr2_2:53046661-53046680 Msa0257310:intron 30.0%
AAGACACACTTAACTATGTT+AGG - chr2_2:53046755-53046774 Msa0257310:intron 30.0%
!! CATGTACTTTGATTTTGACA+AGG - chr2_2:53046804-53046823 Msa0257310:intron 30.0%
CATAAAGTTGCAAACAAATG+TGG - chr2_2:53047028-53047047 Msa0257310:intron 30.0%
AGTTATGCTTAAAGATGTCA+TGG - chr2_2:53047234-53047253 Msa0257310:CDS 30.0%
!! GATTGTGTTGATTCAAGATA+AGG - chr2_2:53047343-53047362 Msa0257310:five_prime_UTR 30.0%
! TTCTTTGTGAATTTGGAACA+AGG + chr2_2:53045699-53045718 None:intergenic 30.0%
!! TTTGTTTCTCTAGTTCTTAC+AGG - chr2_2:53045823-53045842 Msa0257310:intron 30.0%
ATTTCACTAGCTAAGGATAA+TGG - chr2_2:53045862-53045881 Msa0257310:intron 30.0%
!!! TAGCTAAGGATAATGGATTT+TGG - chr2_2:53045869-53045888 Msa0257310:intron 30.0%
!!! GATAATGGATTTTGGATTGA+TGG - chr2_2:53045877-53045896 Msa0257310:intron 30.0%
ATCTTACTATTAGTGACAGT+TGG + chr2_2:53045916-53045935 None:intergenic 30.0%
TACCTATTAGTGAAGTACAA+TGG - chr2_2:53046230-53046249 Msa0257310:CDS 30.0%
AGATATTGCGAATGAGAAAA+CGG - chr2_2:53046615-53046634 Msa0257310:intron 30.0%
AAACTTTACATGGCGAATAT+TGG - chr2_2:53046661-53046680 Msa0257310:intron 30.0%
AAGACACACTTAACTATGTT+AGG - chr2_2:53046755-53046774 Msa0257310:intron 30.0%
!! CATGTACTTTGATTTTGACA+AGG - chr2_2:53046804-53046823 Msa0257310:intron 30.0%
CATAAAGTTGCAAACAAATG+TGG - chr2_2:53047028-53047047 Msa0257310:intron 30.0%
AGTTATGCTTAAAGATGTCA+TGG - chr2_2:53047234-53047253 Msa0257310:CDS 30.0%
!! GATTGTGTTGATTCAAGATA+AGG - chr2_2:53047343-53047362 Msa0257310:five_prime_UTR 30.0%
! ATTTGTTAGAGGAGCCATAA+TGG + chr2_2:53045638-53045657 None:intergenic 35.0%
!! ACTCCATGCAAATTTGTTAG+AGG + chr2_2:53045649-53045668 None:intergenic 35.0%
! TTTGGAACAAGGCATGTAAT+TGG + chr2_2:53045688-53045707 None:intergenic 35.0%
!! TCACAAAGAACCTTTAAGAC+AGG - chr2_2:53045709-53045728 Msa0257310:CDS 35.0%
TACTACTTGTCCTGTCTTAA+AGG + chr2_2:53045722-53045741 None:intergenic 35.0%
CAAGTAGTAGTTGGATTTCT+TGG - chr2_2:53045733-53045752 Msa0257310:CDS 35.0%
TGAGAAGATTTCACTAGCTA+AGG - chr2_2:53045855-53045874 Msa0257310:intron 35.0%
GACATTGGGACAATTATGAT+TGG - chr2_2:53046051-53046070 Msa0257310:intron 35.0%
TGCCATTGTACTTCACTAAT+AGG + chr2_2:53046235-53046254 None:intergenic 35.0%
TTAGGGGTAATCCTGTAAAT+TGG - chr2_2:53046397-53046416 Msa0257310:intron 35.0%
GATATTGCGAATGAGAAAAC+GGG - chr2_2:53046616-53046635 Msa0257310:intron 35.0%
ATATTGCGAATGAGAAAACG+GGG - chr2_2:53046617-53046636 Msa0257310:intron 35.0%
!!! GAGCAAAAGGAAGTGTTTTA+AGG - chr2_2:53046683-53046702 Msa0257310:intron 35.0%
TGCATTTGATCTTCTTGCAA+TGG - chr2_2:53046717-53046736 Msa0257310:intron 35.0%
ACACACTTAACTATGTTAGG+AGG - chr2_2:53046758-53046777 Msa0257310:intron 35.0%
TGAAAGTAGACTTGAGTCTT+AGG + chr2_2:53046786-53046805 None:intergenic 35.0%
TAAGCAGCAATTAACTGATG+TGG - chr2_2:53046852-53046871 Msa0257310:intron 35.0%
TTTAAATTGCGGTTACGTAG+TGG - chr2_2:53046915-53046934 Msa0257310:intron 35.0%
! ATTTGTTAGAGGAGCCATAA+TGG + chr2_2:53045638-53045657 None:intergenic 35.0%
!! ACTCCATGCAAATTTGTTAG+AGG + chr2_2:53045649-53045668 None:intergenic 35.0%
! TTTGGAACAAGGCATGTAAT+TGG + chr2_2:53045688-53045707 None:intergenic 35.0%
!! TCACAAAGAACCTTTAAGAC+AGG - chr2_2:53045709-53045728 Msa0257310:CDS 35.0%
TACTACTTGTCCTGTCTTAA+AGG + chr2_2:53045722-53045741 None:intergenic 35.0%
CAAGTAGTAGTTGGATTTCT+TGG - chr2_2:53045733-53045752 Msa0257310:CDS 35.0%
TGAGAAGATTTCACTAGCTA+AGG - chr2_2:53045855-53045874 Msa0257310:intron 35.0%
GACATTGGGACAATTATGAT+TGG - chr2_2:53046051-53046070 Msa0257310:intron 35.0%
TGCCATTGTACTTCACTAAT+AGG + chr2_2:53046235-53046254 None:intergenic 35.0%
TTAGGGGTAATCCTGTAAAT+TGG - chr2_2:53046397-53046416 Msa0257310:intron 35.0%
GATATTGCGAATGAGAAAAC+GGG - chr2_2:53046616-53046635 Msa0257310:intron 35.0%
ATATTGCGAATGAGAAAACG+GGG - chr2_2:53046617-53046636 Msa0257310:intron 35.0%
!!! GAGCAAAAGGAAGTGTTTTA+AGG - chr2_2:53046683-53046702 Msa0257310:intron 35.0%
TGCATTTGATCTTCTTGCAA+TGG - chr2_2:53046717-53046736 Msa0257310:intron 35.0%
ACACACTTAACTATGTTAGG+AGG - chr2_2:53046758-53046777 Msa0257310:intron 35.0%
TGAAAGTAGACTTGAGTCTT+AGG + chr2_2:53046786-53046805 None:intergenic 35.0%
TAAGCAGCAATTAACTGATG+TGG - chr2_2:53046852-53046871 Msa0257310:intron 35.0%
TTTAAATTGCGGTTACGTAG+TGG - chr2_2:53046915-53046934 Msa0257310:intron 35.0%
GAGTAGCTTCTTCACCATTA+TGG - chr2_2:53045621-53045640 Msa0257310:three_prime_UTR 40.0%
GCTCCTCTAACAAATTTGCA+TGG - chr2_2:53045643-53045662 Msa0257310:three_prime_UTR 40.0%
AAGACAGGACAAGTAGTAGT+TGG - chr2_2:53045724-53045743 Msa0257310:CDS 40.0%
! CTATTAGTGACAGTTGGTTC+TGG + chr2_2:53045910-53045929 None:intergenic 40.0%
TAGACCATACTAAGTGGCTT+AGG - chr2_2:53046379-53046398 Msa0257310:intron 40.0%
AGACCATACTAAGTGGCTTA+GGG - chr2_2:53046380-53046399 Msa0257310:intron 40.0%
ATGGCGAATATTGGAGCAAA+AGG - chr2_2:53046670-53046689 Msa0257310:intron 40.0%
! ATTGCTGCTTATCTTCAGCT+GGG + chr2_2:53046843-53046862 None:intergenic 40.0%
! AATTGCTGCTTATCTTCAGC+TGG + chr2_2:53046844-53046863 None:intergenic 40.0%
! TTGCGGTCATGTTTGTGTTT+TGG - chr2_2:53046993-53047012 Msa0257310:intron 40.0%
TGCTTAAAGATGTCATGGAC+AGG - chr2_2:53047239-53047258 Msa0257310:CDS 40.0%
GAGTAGCTTCTTCACCATTA+TGG - chr2_2:53045621-53045640 Msa0257310:three_prime_UTR 40.0%
GCTCCTCTAACAAATTTGCA+TGG - chr2_2:53045643-53045662 Msa0257310:three_prime_UTR 40.0%
AAGACAGGACAAGTAGTAGT+TGG - chr2_2:53045724-53045743 Msa0257310:CDS 40.0%
! CTATTAGTGACAGTTGGTTC+TGG + chr2_2:53045910-53045929 None:intergenic 40.0%
TAGACCATACTAAGTGGCTT+AGG - chr2_2:53046379-53046398 Msa0257310:intron 40.0%
AGACCATACTAAGTGGCTTA+GGG - chr2_2:53046380-53046399 Msa0257310:intron 40.0%
ATGGCGAATATTGGAGCAAA+AGG - chr2_2:53046670-53046689 Msa0257310:intron 40.0%
! ATTGCTGCTTATCTTCAGCT+GGG + chr2_2:53046843-53046862 None:intergenic 40.0%
! AATTGCTGCTTATCTTCAGC+TGG + chr2_2:53046844-53046863 None:intergenic 40.0%
! TTGCGGTCATGTTTGTGTTT+TGG - chr2_2:53046993-53047012 Msa0257310:intron 40.0%
TGCTTAAAGATGTCATGGAC+AGG - chr2_2:53047239-53047258 Msa0257310:CDS 40.0%
!! TTTGGGAAGTGCTAGTGCTA+TGG + chr2_2:53045525-53045544 None:intergenic 45.0%
TAGCACTAGCACTTCCCAAA+TGG - chr2_2:53045525-53045544 Msa0257310:three_prime_UTR 45.0%
!! GTGACAGTTGGTTCTGGAAT+AGG + chr2_2:53045904-53045923 None:intergenic 45.0%
GCTGACTAGACCATACTAAG+TGG - chr2_2:53046373-53046392 Msa0257310:intron 45.0%
GACCATACTAAGTGGCTTAG+GGG - chr2_2:53046381-53046400 Msa0257310:intron 45.0%
TACCCCTAAGCCACTTAGTA+TGG + chr2_2:53046386-53046405 None:intergenic 45.0%
GTCAGAGACGTAGACACAAT+TGG - chr2_2:53046484-53046503 Msa0257310:intron 45.0%
CACAAACATGACCGCAATTG+TGG + chr2_2:53046990-53047009 None:intergenic 45.0%
ATGTCGTTGGACCACAATTG+CGG + chr2_2:53047063-53047082 None:intergenic 45.0%
AATTGCGGCACAAATGTCGT+TGG + chr2_2:53047076-53047095 None:intergenic 45.0%
GACAGCTTGAAGAAGCTTCA+AGG - chr2_2:53047167-53047186 Msa0257310:CDS 45.0%
!! TTTGGGAAGTGCTAGTGCTA+TGG + chr2_2:53045525-53045544 None:intergenic 45.0%
TAGCACTAGCACTTCCCAAA+TGG - chr2_2:53045525-53045544 Msa0257310:three_prime_UTR 45.0%
!! GTGACAGTTGGTTCTGGAAT+AGG + chr2_2:53045904-53045923 None:intergenic 45.0%
GCTGACTAGACCATACTAAG+TGG - chr2_2:53046373-53046392 Msa0257310:intron 45.0%
GACCATACTAAGTGGCTTAG+GGG - chr2_2:53046381-53046400 Msa0257310:intron 45.0%
TACCCCTAAGCCACTTAGTA+TGG + chr2_2:53046386-53046405 None:intergenic 45.0%
GTCAGAGACGTAGACACAAT+TGG - chr2_2:53046484-53046503 Msa0257310:intron 45.0%
CACAAACATGACCGCAATTG+TGG + chr2_2:53046990-53047009 None:intergenic 45.0%
ATGTCGTTGGACCACAATTG+CGG + chr2_2:53047063-53047082 None:intergenic 45.0%
AATTGCGGCACAAATGTCGT+TGG + chr2_2:53047076-53047095 None:intergenic 45.0%
GACAGCTTGAAGAAGCTTCA+AGG - chr2_2:53047167-53047186 Msa0257310:CDS 45.0%
! GGTTGATGCGACCACAATTG+CGG - chr2_2:53046976-53046995 Msa0257310:intron 50.0%
GCGGTCAACAACTGCAATTG+CGG + chr2_2:53047091-53047110 None:intergenic 50.0%
! GGTTGATGCGACCACAATTG+CGG - chr2_2:53046976-53046995 Msa0257310:intron 50.0%
GCGGTCAACAACTGCAATTG+CGG + chr2_2:53047091-53047110 None:intergenic 50.0%
GTGCTATGGTGTCCACTGAG+TGG + chr2_2:53045511-53045530 None:intergenic 55.0%
GGCTAATGCAGCCGCAATTG+TGG - chr2_2:53047049-53047068 Msa0257310:CDS 55.0%
GTGCTATGGTGTCCACTGAG+TGG + chr2_2:53045511-53045530 None:intergenic 55.0%
GGCTAATGCAGCCGCAATTG+TGG - chr2_2:53047049-53047068 Msa0257310:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 53045498 53047464 53045498 ID=Msa0257310;Name=Msa0257310
chr2_2 mRNA 53045498 53047464 53045498 ID=Msa0257310-mRNA-1;Parent=Msa0257310;Name=Msa0257310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|3|176|230
chr2_2 exon 53045498 53045790 53045498 ID=Msa0257310-mRNA-1:exon:15931;Parent=Msa0257310-mRNA-1
chr2_2 exon 53046059 53046345 53046059 ID=Msa0257310-mRNA-1:exon:15930;Parent=Msa0257310-mRNA-1
chr2_2 exon 53047034 53047464 53047034 ID=Msa0257310-mRNA-1:exon:15929;Parent=Msa0257310-mRNA-1
chr2_2 five_prime_UTR 53047323 53047464 53047323 ID=Msa0257310-mRNA-1:five_prime_utr;Parent=Msa0257310-mRNA-1
chr2_2 CDS 53047034 53047322 53047034 ID=Msa0257310-mRNA-1:cds;Parent=Msa0257310-mRNA-1
chr2_2 CDS 53046059 53046345 53046059 ID=Msa0257310-mRNA-1:cds;Parent=Msa0257310-mRNA-1
chr2_2 CDS 53045674 53045790 53045674 ID=Msa0257310-mRNA-1:cds;Parent=Msa0257310-mRNA-1
chr2_2 three_prime_UTR 53045498 53045673 53045498 ID=Msa0257310-mRNA-1:three_prime_utr;Parent=Msa0257310-mRNA-1
Gene Sequence

>Msa0257310

ATGGCTCCTCTAACAAATTTGCATGGAGTCTCCAAAACTTTAACTCCAATTACATGCCTTGTTCCAAATTCACAAAGAACCTTTAAGACAGGACAAGTAGTAGTTGGATTTCTTGGAAGCAAAACAAAGAAATCATCAGAATGTGAATCAGTTAACACTACAAGAAGAGCAGCTGCAATAAGCTTTGTTTCTCTAGTTCTTACAGGACAATTCAGTGAGAAGATTTCACTAGCTAAGGATAATGGATTTTGGATTGATGGACCTATTCCAGAACCAACTGTCACTAATAATATTGCGAATGAGAAAACGGGGACACGTTCTTTTATTAAGAAGAAACTTTACATGGCGAATATTGGAGCAAAAGGAAGTGTTTTAAGGATCAAGAAATATGCATTTGATCTTCTTGCAATGGCAGATTTGATTGCACAAGACACACTTAACTATGTTAGGAGGTACCTAAGACTCAAGTCTACTTTCATGTACTTTGATTTTGACAAGGTTATCTCTGCTGTCCCAGCTGAAGATAAGCAGCAATTAACTGATGTGGCAAACAAATTGTTTGATAATTTTGAAAAGCTTGAAGAAGCTTCAAGGAACAAAAATCTACTTGAAACTCAAGCATGCTATAAAGAAACTGAAGTTATGCTTAAAGATGTCATGGACAGGATGACTATAATGTATAAAACAATTTGA

Protein sequence

>Msa0257310

MAPLTNLHGVSKTLTPITCLVPNSQRTFKTGQVVVGFLGSKTKKSSECESVNTTRRAAAISFVSLVLTGQFSEKISLAKDNGFWIDGPIPEPTVTNNIANEKTGTRSFIKKKLYMANIGAKGSVLRIKKYAFDLLAMADLIAQDTLNYVRRYLRLKSTFMYFDFDKVISAVPAEDKQQLTDVANKLFDNFEKLEEASRNKNLLETQACYKETEVMLKDVMDRMTIMYKTI*