AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0931480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931480 MtrunA17_Chr4g0013261 87.850 107 12 1 1 107 1 106 1.05e-61 184
Msa0931480 MtrunA17_Chr4g0013251 77.570 107 23 1 1 107 1 106 1.35e-54 166
Msa0931480 MtrunA17_Chr4g0012951 69.159 107 31 1 1 107 1 105 9.03e-46 143
Msa0931480 MtrunA17_Chr4g0013001 65.421 107 35 1 1 107 1 105 4.81e-43 136
Msa0931480 MtrunA17_Chr4g0012991 65.421 107 35 1 1 107 56 160 2.25e-42 136
Msa0931480 MtrunA17_Chr4g0012961 63.551 107 37 1 1 107 1 105 5.29e-42 134
Msa0931480 MtrunA17_Chr4g0013211 48.598 107 53 2 1 107 1 105 8.59e-26 92.8
Msa0931480 MtrunA17_Chr2g0309241 41.667 108 59 3 1 107 1 105 1.04e-22 85.1
Msa0931480 MtrunA17_Chr4g0012891 49.038 104 45 4 11 107 14 116 1.06e-21 82.8
Msa0931480 MtrunA17_Chr7g0244641 36.937 111 64 2 4 108 1 111 2.80e-20 79.0
Msa0931480 MtrunA17_Chr7g0244691 40.909 110 58 3 4 107 1 109 6.66e-20 78.2
Msa0931480 MtrunA17_Chr7g0244671 34.545 110 66 2 4 107 1 110 4.97e-19 76.6
Msa0931480 MtrunA17_Chr4g0012901 38.889 108 64 2 1 107 5 111 5.73e-19 75.9
Msa0931480 MtrunA17_Chr7g0244831 43.396 106 55 4 4 107 7 109 1.42e-18 74.7
Msa0931480 MtrunA17_Chr7g0244841 41.837 98 54 3 11 107 13 108 3.06e-18 73.9
Msa0931480 MtrunA17_Chr4g0012921 37.037 108 67 1 1 107 1 108 7.77e-17 70.1
Msa0931480 MtrunA17_Chr7g0244811 37.500 104 61 2 1 102 5 106 1.13e-16 70.1
Msa0931480 MtrunA17_Chr3g0107481 32.039 103 69 1 5 107 3 104 2.47e-16 68.9
Msa0931480 MtrunA17_Chr3g0095931 33.333 99 62 3 12 107 15 112 2.12e-15 66.6
Msa0931480 MtrunA17_Chr4g0012931 33.636 110 68 3 1 107 1 108 2.27e-14 64.3
Msa0931480 MtrunA17_Chr7g0244741 37.615 109 65 1 2 107 3 111 3.21e-14 63.5
Msa0931480 MtrunA17_Chr7g0244721 33.333 108 70 1 2 107 3 110 1.31e-13 62.0
Msa0931480 MtrunA17_Chr7g0233431 31.313 99 67 1 10 107 23 121 1.81e-13 62.0
Msa0931480 MtrunA17_Chr3g0104951 32.407 108 67 4 4 106 7 113 2.56e-13 61.2
Msa0931480 MtrunA17_Chr3g0104931 32.407 108 67 4 4 106 7 113 2.56e-13 61.2
Msa0931480 MtrunA17_Chr3g0104941 32.407 108 67 4 4 106 7 113 2.56e-13 61.2
Msa0931480 MtrunA17_Chr7g0244821 35.514 107 67 2 2 107 3 108 3.40e-13 61.2
Msa0931480 MtrunA17_Chr3g0105001 31.481 108 68 4 4 106 7 113 5.61e-13 60.5
Msa0931480 MtrunA17_Chr3g0104921 33.654 104 63 4 8 106 1 103 9.04e-13 59.7
Msa0931480 MtrunA17_Chr3g0104911 33.654 104 63 4 8 106 1 103 9.04e-13 59.7
Msa0931480 MtrunA17_Chr3g0105021 36.905 84 48 3 27 106 31 113 9.83e-13 59.7
Msa0931480 MtrunA17_Chr3g0105011 36.905 84 48 3 27 106 31 113 9.83e-13 59.7
Msa0931480 MtrunA17_Chr3g0104981 36.905 84 48 3 27 106 31 113 1.08e-12 59.7
Msa0931480 MtrunA17_Chr3g0105041 32.407 108 67 4 4 106 7 113 1.09e-12 59.7
Msa0931480 MtrunA17_Chr3g0104971 31.481 108 68 4 4 106 7 113 1.11e-12 59.7
Msa0931480 MtrunA17_Chr3g0095991 30.556 108 69 4 4 106 7 113 1.40e-12 59.3
Msa0931480 MtrunA17_Chr3g0104901 32.075 106 66 4 6 106 9 113 1.74e-12 59.3
Msa0931480 MtrunA17_Chr3g0104991 36.905 84 48 3 27 106 31 113 2.42e-12 58.9
Msa0931480 MtrunA17_Chr3g0095951 30.556 108 69 4 4 106 7 113 3.68e-12 58.2
Msa0931480 MtrunA17_Chr1g0165761 36.364 110 63 3 4 107 1 109 3.88e-12 58.2
Msa0931480 MtrunA17_Chr7g0244681 35.514 107 68 1 2 107 3 109 3.92e-12 58.2
Msa0931480 MtrunA17_Chr3g0096021 30.556 108 69 4 4 106 7 113 4.76e-12 58.2
Msa0931480 MtrunA17_Chr3g0105031 35.714 84 49 3 27 106 21 103 6.83e-12 57.4
Msa0931480 MtrunA17_Chr3g0101431 31.858 113 69 5 1 106 1 112 9.26e-12 57.4
Msa0931480 MtrunA17_Chr3g0096031 30.556 108 69 4 4 106 7 113 9.98e-12 57.0
Msa0931480 MtrunA17_Chr3g0104961 35.714 84 49 3 27 106 31 113 1.65e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931480 AT5G59320.1 45.098 102 55 1 8 109 7 107 1.05e-23 88.2
Msa0931480 AT3G51590.1 43.564 101 54 1 12 109 8 108 4.87e-22 84.0
Msa0931480 AT5G59310.1 45.000 100 51 2 8 107 7 102 8.85e-22 83.2
Msa0931480 AT3G51600.1 48.980 98 47 3 12 107 12 108 1.83e-19 77.4
Msa0931480 AT2G38540.1 46.226 106 53 4 4 107 5 108 6.51e-19 75.9
Msa0931480 AT4G33355.2 43.158 95 50 1 13 103 11 105 1.07e-18 75.5
Msa0931480 AT4G33355.1 43.158 95 50 1 13 103 11 105 1.11e-18 75.5
Msa0931480 AT2G38530.1 43.810 105 57 2 4 107 5 108 5.95e-18 73.6
Msa0931480 AT2G15050.3 41.346 104 55 4 12 109 11 114 1.09e-17 72.8
Msa0931480 AT2G15050.1 41.346 104 55 4 12 109 11 114 1.42e-17 72.8
Msa0931480 AT5G01870.1 41.121 107 58 4 4 107 2 106 1.66e-17 72.4
Msa0931480 AT2G15050.2 39.216 102 58 3 12 109 11 112 2.28e-17 72.0
Msa0931480 AT2G18370.1 37.647 85 51 2 23 106 22 105 3.01e-14 63.9
Msa0931480 AT3G08770.1 40.230 87 48 3 24 107 18 103 7.26e-14 62.8
Msa0931480 AT3G08770.2 40.230 87 48 3 24 107 18 103 8.87e-14 62.8

Find 46 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGCAACAACTATAAATAT+AGG 0.321379 6_2:+80990226 None:intergenic
CTTGCGGGCGGGGCCGTTGT+TGG 0.344393 6_2:+80991486 None:intergenic
GCAGTTGCAAGCAGTCTTGC+GGG 0.361401 6_2:+80991471 None:intergenic
GCACTATAGCTGTAGAATAA+AGG 0.369849 6_2:-80990425 Msa0931480:three_prime_UTR
TGCAAGCAGTCTTGCGGGCG+GGG 0.373033 6_2:+80991476 None:intergenic
CCATGCATTACTTATCTTCA+AGG 0.382464 6_2:-80991565 Msa0931480:CDS
TACATGTGCAACAACCAAAC+TGG 0.389230 6_2:+80990314 None:intergenic
GAGCAACAACTATAAATATA+GGG 0.399826 6_2:+80990227 None:intergenic
TTGCAAGCAGTCTTGCGGGC+GGG 0.409587 6_2:+80991475 None:intergenic
ACTTATCTTCAAGGTGGTGC+TGG 0.410647 6_2:-80991556 Msa0931480:CDS
GTGACTGCTGCCTCTGCCAT+TGG 0.435322 6_2:+80991616 None:intergenic
GATAAGTAATGCATGGAGTA+AGG 0.447792 6_2:+80991572 None:intergenic
GCGGGCGGGGCCGTTGTTGG+CGG 0.458612 6_2:+80991489 None:intergenic
TGCAATTATGTGCATGGTGG+TGG 0.466945 6_2:-80991647 Msa0931480:CDS
AACTGCTTGAAAAGTGCTGC+TGG 0.487551 6_2:-80991454 Msa0931480:CDS
ATGTTAACACCACATTTGCC+AGG 0.490963 6_2:+80991391 None:intergenic
GCTGCTCTCCCTGGCAAATG+TGG 0.495611 6_2:-80991400 Msa0931480:CDS
AGCAGTTGCAAGCAGTCTTG+CGG 0.506600 6_2:+80991470 None:intergenic
GTTGTTATTCAAACGAGCAA+TGG 0.508618 6_2:+80991429 None:intergenic
AACCAAGCTGCTGCTCTCCC+TGG 0.514408 6_2:-80991409 Msa0931480:CDS
GGTGGAGTGAGGAGACTTAA+CGG 0.519956 6_2:-80991514 Msa0931480:CDS
TGCCAGGGAGAGCAGCAGCT+TGG 0.525683 6_2:+80991407 None:intergenic
CAAGAGGAAACTCGCAGAAG+TGG 0.528500 6_2:+80990386 None:intergenic
TACAATTGTTAAATGTAGCA+TGG 0.533974 6_2:+80990265 None:intergenic
AGAGAAAGAAGAAGATAGCA+TGG 0.537528 6_2:-80990474 Msa0931480:three_prime_UTR
TTTGGCTGCAATTATGTGCA+TGG 0.538143 6_2:-80991653 Msa0931480:CDS
ACAACCAAACTGGAAAGAAA+AGG 0.538385 6_2:+80990324 None:intergenic
GGTCCATCTGCAGCATGCTG+TGG 0.539612 6_2:-80991535 Msa0931480:CDS
GTTGCAAGCAGTCTTGCGGG+CGG 0.541246 6_2:+80991474 None:intergenic
TTATTCTACAGCTATAGTGC+TGG 0.541332 6_2:+80990428 None:intergenic
CCATCTGCAGCATGCTGTGG+TGG 0.550747 6_2:-80991532 Msa0931480:CDS
GTAGAAGTGCTAAACTTGTA+GGG 0.551668 6_2:+80991367 None:intergenic
GTCACATGTGGACAAGTAGT+AGG 0.553840 6_2:-80991598 Msa0931480:CDS
GAATAAAGGAAGAGCAATGA+GGG 0.557023 6_2:-80990411 Msa0931480:three_prime_UTR
GGTTACTGCACCAATGGCAG+AGG 0.568355 6_2:-80991626 Msa0931480:CDS
CCACCACAGCATGCTGCAGA+TGG 0.580113 6_2:+80991532 None:intergenic
GGTGGTGGTTACTGCACCAA+TGG 0.601083 6_2:-80991632 Msa0931480:CDS
CTTAACGGTGCCGCCAACAA+CGG 0.605014 6_2:-80991499 Msa0931480:CDS
CCTTGAAGATAAGTAATGCA+TGG 0.607580 6_2:+80991565 None:intergenic
AATTATAAGTCTGAAACAAG+AGG 0.611485 6_2:+80990370 None:intergenic
GCAGAGGCAGCAGTCACATG+TGG 0.630368 6_2:-80991610 Msa0931480:CDS
AGAATAAAGGAAGAGCAATG+AGG 0.632653 6_2:-80990412 Msa0931480:three_prime_UTR
TGTTAACACCACATTTGCCA+GGG 0.642773 6_2:+80991392 None:intergenic
CAGCATGCTGTGGTGGAGTG+AGG 0.648040 6_2:-80991525 Msa0931480:CDS
TGCATTACTTATCTTCAAGG+TGG 0.657751 6_2:-80991562 Msa0931480:CDS
GGCTGCAATTATGTGCATGG+TGG 0.657959 6_2:-80991650 Msa0931480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACACAAATATATATATATA+GGG + chr6_2:80990705-80990724 None:intergenic 10.0%
!! ATACACAAATATATATATAT+AGG + chr6_2:80990706-80990725 None:intergenic 10.0%
!! TACACAAATATATATATATA+GGG + chr6_2:80990705-80990724 None:intergenic 10.0%
!! ATACACAAATATATATATAT+AGG + chr6_2:80990706-80990725 None:intergenic 10.0%
!! ACAAAAAAAACTATTTACAA+TGG - chr6_2:80990865-80990884 Msa0931480:intron 15.0%
!! TTTATATGGTATAAAATAAG+TGG - chr6_2:80991075-80991094 Msa0931480:intron 15.0%
!! ACAAAAAAAACTATTTACAA+TGG - chr6_2:80990865-80990884 Msa0931480:intron 15.0%
!! TTTATATGGTATAAAATAAG+TGG - chr6_2:80991075-80991094 Msa0931480:intron 15.0%
!! ATTTCTCATATACGTAATTA+AGG + chr6_2:80990528-80990547 None:intergenic 20.0%
!! GGCATATTTAATAAGTTATT+TGG + chr6_2:80990828-80990847 None:intergenic 20.0%
!! TGAGACATTAAAATGATAAT+TGG - chr6_2:80990982-80991001 Msa0931480:intron 20.0%
!! TATACGTGTATAATTGTATT+AGG - chr6_2:80991039-80991058 Msa0931480:intron 20.0%
!! GTATCAAAACAAAGTTTATA+TGG - chr6_2:80991061-80991080 Msa0931480:intron 20.0%
!! ATTTCTCATATACGTAATTA+AGG + chr6_2:80990528-80990547 None:intergenic 20.0%
!! GGCATATTTAATAAGTTATT+TGG + chr6_2:80990828-80990847 None:intergenic 20.0%
!! TGAGACATTAAAATGATAAT+TGG - chr6_2:80990982-80991001 Msa0931480:intron 20.0%
!! TATACGTGTATAATTGTATT+AGG - chr6_2:80991039-80991058 Msa0931480:intron 20.0%
!! GTATCAAAACAAAGTTTATA+TGG - chr6_2:80991061-80991080 Msa0931480:intron 20.0%
!! TCTCTAAGAATACTCTTTAA+CGG - chr6_2:80990558-80990577 Msa0931480:intron 25.0%
!!! AATCTTTAAAGAGTACCATT+AGG - chr6_2:80990669-80990688 Msa0931480:intron 25.0%
!!! ATCTTTAAAGAGTACCATTA+GGG - chr6_2:80990670-80990689 Msa0931480:intron 25.0%
! ATATGCCTAAAAAAATGAAG+TGG - chr6_2:80990841-80990860 Msa0931480:intron 25.0%
!!! TTGTTCCACTTCATTTTTTT+AGG + chr6_2:80990849-80990868 None:intergenic 25.0%
! GACATTAAAATGATAATTGG+AGG - chr6_2:80990985-80991004 Msa0931480:intron 25.0%
! ATTAAAATGATAATTGGAGG+AGG - chr6_2:80990988-80991007 Msa0931480:intron 25.0%
!! AATTATAAGTCTGAAACAAG+AGG + chr6_2:80991471-80991490 None:intergenic 25.0%
! TACAATTGTTAAATGTAGCA+TGG + chr6_2:80991576-80991595 None:intergenic 25.0%
! GAGCAACAACTATAAATATA+GGG + chr6_2:80991614-80991633 None:intergenic 25.0%
! TGAGCAACAACTATAAATAT+AGG + chr6_2:80991615-80991634 None:intergenic 25.0%
!! TCTCTAAGAATACTCTTTAA+CGG - chr6_2:80990558-80990577 Msa0931480:intron 25.0%
!!! AATCTTTAAAGAGTACCATT+AGG - chr6_2:80990669-80990688 Msa0931480:intron 25.0%
!!! ATCTTTAAAGAGTACCATTA+GGG - chr6_2:80990670-80990689 Msa0931480:intron 25.0%
! ATATGCCTAAAAAAATGAAG+TGG - chr6_2:80990841-80990860 Msa0931480:intron 25.0%
!!! TTGTTCCACTTCATTTTTTT+AGG + chr6_2:80990849-80990868 None:intergenic 25.0%
! GACATTAAAATGATAATTGG+AGG - chr6_2:80990985-80991004 Msa0931480:intron 25.0%
! ATTAAAATGATAATTGGAGG+AGG - chr6_2:80990988-80991007 Msa0931480:intron 25.0%
!! AATTATAAGTCTGAAACAAG+AGG + chr6_2:80991471-80991490 None:intergenic 25.0%
! TACAATTGTTAAATGTAGCA+TGG + chr6_2:80991576-80991595 None:intergenic 25.0%
! GAGCAACAACTATAAATATA+GGG + chr6_2:80991614-80991633 None:intergenic 25.0%
! TGAGCAACAACTATAAATAT+AGG + chr6_2:80991615-80991634 None:intergenic 25.0%
CTCATATACGTAATTAAGGA+GGG + chr6_2:80990524-80990543 None:intergenic 30.0%
TCTCATATACGTAATTAAGG+AGG + chr6_2:80990525-80990544 None:intergenic 30.0%
!! TACCTGAAGAAGTTTTATGT+AGG - chr6_2:80990773-80990792 Msa0931480:intron 30.0%
! GTCTCACAATCACTTAATTT+TGG + chr6_2:80990968-80990987 None:intergenic 30.0%
! TATGAGTGACTTTGCATTTT+TGG - chr6_2:80991106-80991125 Msa0931480:intron 30.0%
! ATGAGTGACTTTGCATTTTT+GGG - chr6_2:80991107-80991126 Msa0931480:intron 30.0%
ACTATCTATATGCTCATGAA+GGG + chr6_2:80991239-80991258 None:intergenic 30.0%
! TTTTCCTTTTCTTTCCAGTT+TGG - chr6_2:80991510-80991529 Msa0931480:CDS 30.0%
CTCATATACGTAATTAAGGA+GGG + chr6_2:80990524-80990543 None:intergenic 30.0%
TCTCATATACGTAATTAAGG+AGG + chr6_2:80990525-80990544 None:intergenic 30.0%
!! TACCTGAAGAAGTTTTATGT+AGG - chr6_2:80990773-80990792 Msa0931480:intron 30.0%
! GTCTCACAATCACTTAATTT+TGG + chr6_2:80990968-80990987 None:intergenic 30.0%
! TATGAGTGACTTTGCATTTT+TGG - chr6_2:80991106-80991125 Msa0931480:intron 30.0%
! ATGAGTGACTTTGCATTTTT+GGG - chr6_2:80991107-80991126 Msa0931480:intron 30.0%
ACTATCTATATGCTCATGAA+GGG + chr6_2:80991239-80991258 None:intergenic 30.0%
! TTTTCCTTTTCTTTCCAGTT+TGG - chr6_2:80991510-80991529 Msa0931480:CDS 30.0%
! AAGCATGAGAGTTGCATTTT+TGG - chr6_2:80990167-80990186 Msa0931480:three_prime_UTR 35.0%
GATAAGTAATGCATGGAGTA+AGG + chr6_2:80990269-80990288 None:intergenic 35.0%
CCTTGAAGATAAGTAATGCA+TGG + chr6_2:80990276-80990295 None:intergenic 35.0%
CCATGCATTACTTATCTTCA+AGG - chr6_2:80990273-80990292 Msa0931480:three_prime_UTR 35.0%
TGCATTACTTATCTTCAAGG+TGG - chr6_2:80990276-80990295 Msa0931480:three_prime_UTR 35.0%
! GTTGTTATTCAAACGAGCAA+TGG + chr6_2:80990412-80990431 None:intergenic 35.0%
!! GTAGAAGTGCTAAACTTGTA+GGG + chr6_2:80990474-80990493 None:intergenic 35.0%
!! AGTAGAAGTGCTAAACTTGT+AGG + chr6_2:80990475-80990494 None:intergenic 35.0%
GCACTTCTACTAACTGTAAT+AGG - chr6_2:80990484-80990503 Msa0931480:three_prime_UTR 35.0%
CTCCTACATAAAACTTCTTC+AGG + chr6_2:80990778-80990797 None:intergenic 35.0%
!! CTGAAGAAGTTTTATGTAGG+AGG - chr6_2:80990776-80990795 Msa0931480:intron 35.0%
!! TTGGTCATCATCTTTTAGCT+TGG + chr6_2:80990949-80990968 None:intergenic 35.0%
!! TTTTTGGGCAGTCATCAAAA+TGG - chr6_2:80991122-80991141 Msa0931480:intron 35.0%
CACTATCTATATGCTCATGA+AGG + chr6_2:80991240-80991259 None:intergenic 35.0%
AGAGAAAGAAGAAGATAGCA+TGG - chr6_2:80991364-80991383 Msa0931480:intron 35.0%
TTATTCTACAGCTATAGTGC+TGG + chr6_2:80991413-80991432 None:intergenic 35.0%
GCACTATAGCTGTAGAATAA+AGG - chr6_2:80991413-80991432 Msa0931480:CDS 35.0%
AGAATAAAGGAAGAGCAATG+AGG - chr6_2:80991426-80991445 Msa0931480:CDS 35.0%
GAATAAAGGAAGAGCAATGA+GGG - chr6_2:80991427-80991446 Msa0931480:CDS 35.0%
ACAACCAAACTGGAAAGAAA+AGG + chr6_2:80991517-80991536 None:intergenic 35.0%
! AAGCATGAGAGTTGCATTTT+TGG - chr6_2:80990167-80990186 Msa0931480:three_prime_UTR 35.0%
GATAAGTAATGCATGGAGTA+AGG + chr6_2:80990269-80990288 None:intergenic 35.0%
CCTTGAAGATAAGTAATGCA+TGG + chr6_2:80990276-80990295 None:intergenic 35.0%
CCATGCATTACTTATCTTCA+AGG - chr6_2:80990273-80990292 Msa0931480:three_prime_UTR 35.0%
TGCATTACTTATCTTCAAGG+TGG - chr6_2:80990276-80990295 Msa0931480:three_prime_UTR 35.0%
! GTTGTTATTCAAACGAGCAA+TGG + chr6_2:80990412-80990431 None:intergenic 35.0%
!! GTAGAAGTGCTAAACTTGTA+GGG + chr6_2:80990474-80990493 None:intergenic 35.0%
!! AGTAGAAGTGCTAAACTTGT+AGG + chr6_2:80990475-80990494 None:intergenic 35.0%
GCACTTCTACTAACTGTAAT+AGG - chr6_2:80990484-80990503 Msa0931480:three_prime_UTR 35.0%
CTCCTACATAAAACTTCTTC+AGG + chr6_2:80990778-80990797 None:intergenic 35.0%
!! CTGAAGAAGTTTTATGTAGG+AGG - chr6_2:80990776-80990795 Msa0931480:intron 35.0%
!! TTGGTCATCATCTTTTAGCT+TGG + chr6_2:80990949-80990968 None:intergenic 35.0%
!! TTTTTGGGCAGTCATCAAAA+TGG - chr6_2:80991122-80991141 Msa0931480:intron 35.0%
CACTATCTATATGCTCATGA+AGG + chr6_2:80991240-80991259 None:intergenic 35.0%
AGAGAAAGAAGAAGATAGCA+TGG - chr6_2:80991364-80991383 Msa0931480:intron 35.0%
TTATTCTACAGCTATAGTGC+TGG + chr6_2:80991413-80991432 None:intergenic 35.0%
GCACTATAGCTGTAGAATAA+AGG - chr6_2:80991413-80991432 Msa0931480:CDS 35.0%
AGAATAAAGGAAGAGCAATG+AGG - chr6_2:80991426-80991445 Msa0931480:CDS 35.0%
GAATAAAGGAAGAGCAATGA+GGG - chr6_2:80991427-80991446 Msa0931480:CDS 35.0%
ACAACCAAACTGGAAAGAAA+AGG + chr6_2:80991517-80991536 None:intergenic 35.0%
TTTGGCTGCAATTATGTGCA+TGG - chr6_2:80990185-80990204 Msa0931480:three_prime_UTR 40.0%
TGTTAACACCACATTTGCCA+GGG + chr6_2:80990449-80990468 None:intergenic 40.0%
ATGTTAACACCACATTTGCC+AGG + chr6_2:80990450-80990469 None:intergenic 40.0%
! CTTTAACGGTCTAAAGTAGC+AGG - chr6_2:80990572-80990591 Msa0931480:intron 40.0%
!! TAGGGTTTTGTGTTCCCTAA+TGG + chr6_2:80990687-80990706 None:intergenic 40.0%
!!! GTCATCATCTTTTAGCTTGG+AGG + chr6_2:80990946-80990965 None:intergenic 40.0%
! GTTTTCTGTATTGCAGCATC+AGG - chr6_2:80991319-80991338 Msa0931480:intron 40.0%
TACATGTGCAACAACCAAAC+TGG + chr6_2:80991527-80991546 None:intergenic 40.0%
TTTGGCTGCAATTATGTGCA+TGG - chr6_2:80990185-80990204 Msa0931480:three_prime_UTR 40.0%
TGTTAACACCACATTTGCCA+GGG + chr6_2:80990449-80990468 None:intergenic 40.0%
ATGTTAACACCACATTTGCC+AGG + chr6_2:80990450-80990469 None:intergenic 40.0%
! CTTTAACGGTCTAAAGTAGC+AGG - chr6_2:80990572-80990591 Msa0931480:intron 40.0%
!! TAGGGTTTTGTGTTCCCTAA+TGG + chr6_2:80990687-80990706 None:intergenic 40.0%
!!! GTCATCATCTTTTAGCTTGG+AGG + chr6_2:80990946-80990965 None:intergenic 40.0%
! GTTTTCTGTATTGCAGCATC+AGG - chr6_2:80991319-80991338 Msa0931480:intron 40.0%
TACATGTGCAACAACCAAAC+TGG + chr6_2:80991527-80991546 None:intergenic 40.0%
TGCAATTATGTGCATGGTGG+TGG - chr6_2:80990191-80990210 Msa0931480:three_prime_UTR 45.0%
GTCACATGTGGACAAGTAGT+AGG - chr6_2:80990240-80990259 Msa0931480:three_prime_UTR 45.0%
ACTTATCTTCAAGGTGGTGC+TGG - chr6_2:80990282-80990301 Msa0931480:three_prime_UTR 45.0%
!! AACTGCTTGAAAAGTGCTGC+TGG - chr6_2:80990384-80990403 Msa0931480:three_prime_UTR 45.0%
TGCAATTATGTGCATGGTGG+TGG - chr6_2:80990191-80990210 Msa0931480:three_prime_UTR 45.0%
GTCACATGTGGACAAGTAGT+AGG - chr6_2:80990240-80990259 Msa0931480:three_prime_UTR 45.0%
ACTTATCTTCAAGGTGGTGC+TGG - chr6_2:80990282-80990301 Msa0931480:three_prime_UTR 45.0%
!! AACTGCTTGAAAAGTGCTGC+TGG - chr6_2:80990384-80990403 Msa0931480:three_prime_UTR 45.0%
!!! ATTTTTTAATATTATTAGTT+AGG - chr6_2:80991666-80991685 Msa0931480:CDS 5.0%
!!! ATTTTTTAATATTATTAGTT+AGG - chr6_2:80991666-80991685 Msa0931480:CDS 5.0%
GGCTGCAATTATGTGCATGG+TGG - chr6_2:80990188-80990207 Msa0931480:three_prime_UTR 50.0%
GGTGGAGTGAGGAGACTTAA+CGG - chr6_2:80990324-80990343 Msa0931480:three_prime_UTR 50.0%
AGCAGTTGCAAGCAGTCTTG+CGG + chr6_2:80990371-80990390 None:intergenic 50.0%
CAAGAGGAAACTCGCAGAAG+TGG + chr6_2:80991455-80991474 None:intergenic 50.0%
GGCTGCAATTATGTGCATGG+TGG - chr6_2:80990188-80990207 Msa0931480:three_prime_UTR 50.0%
GGTGGAGTGAGGAGACTTAA+CGG - chr6_2:80990324-80990343 Msa0931480:three_prime_UTR 50.0%
AGCAGTTGCAAGCAGTCTTG+CGG + chr6_2:80990371-80990390 None:intergenic 50.0%
CAAGAGGAAACTCGCAGAAG+TGG + chr6_2:80991455-80991474 None:intergenic 50.0%
! GGTGGTGGTTACTGCACCAA+TGG - chr6_2:80990206-80990225 Msa0931480:three_prime_UTR 55.0%
GGTTACTGCACCAATGGCAG+AGG - chr6_2:80990212-80990231 Msa0931480:three_prime_UTR 55.0%
!! CTTAACGGTGCCGCCAACAA+CGG - chr6_2:80990339-80990358 Msa0931480:three_prime_UTR 55.0%
GCAGTTGCAAGCAGTCTTGC+GGG + chr6_2:80990370-80990389 None:intergenic 55.0%
! GGTGGTGGTTACTGCACCAA+TGG - chr6_2:80990206-80990225 Msa0931480:three_prime_UTR 55.0%
GGTTACTGCACCAATGGCAG+AGG - chr6_2:80990212-80990231 Msa0931480:three_prime_UTR 55.0%
!! CTTAACGGTGCCGCCAACAA+CGG - chr6_2:80990339-80990358 Msa0931480:three_prime_UTR 55.0%
GCAGTTGCAAGCAGTCTTGC+GGG + chr6_2:80990370-80990389 None:intergenic 55.0%
GTGACTGCTGCCTCTGCCAT+TGG + chr6_2:80990225-80990244 None:intergenic 60.0%
GCAGAGGCAGCAGTCACATG+TGG - chr6_2:80990228-80990247 Msa0931480:three_prime_UTR 60.0%
GGTCCATCTGCAGCATGCTG+TGG - chr6_2:80990303-80990322 Msa0931480:three_prime_UTR 60.0%
CCACCACAGCATGCTGCAGA+TGG + chr6_2:80990309-80990328 None:intergenic 60.0%
CCATCTGCAGCATGCTGTGG+TGG - chr6_2:80990306-80990325 Msa0931480:three_prime_UTR 60.0%
! CAGCATGCTGTGGTGGAGTG+AGG - chr6_2:80990313-80990332 Msa0931480:three_prime_UTR 60.0%
TTGCAAGCAGTCTTGCGGGC+GGG + chr6_2:80990366-80990385 None:intergenic 60.0%
GTTGCAAGCAGTCTTGCGGG+CGG + chr6_2:80990367-80990386 None:intergenic 60.0%
AACCAAGCTGCTGCTCTCCC+TGG - chr6_2:80990429-80990448 Msa0931480:three_prime_UTR 60.0%
GCTGCTCTCCCTGGCAAATG+TGG - chr6_2:80990438-80990457 Msa0931480:three_prime_UTR 60.0%
GTGACTGCTGCCTCTGCCAT+TGG + chr6_2:80990225-80990244 None:intergenic 60.0%
GCAGAGGCAGCAGTCACATG+TGG - chr6_2:80990228-80990247 Msa0931480:three_prime_UTR 60.0%
GGTCCATCTGCAGCATGCTG+TGG - chr6_2:80990303-80990322 Msa0931480:three_prime_UTR 60.0%
CCACCACAGCATGCTGCAGA+TGG + chr6_2:80990309-80990328 None:intergenic 60.0%
CCATCTGCAGCATGCTGTGG+TGG - chr6_2:80990306-80990325 Msa0931480:three_prime_UTR 60.0%
! CAGCATGCTGTGGTGGAGTG+AGG - chr6_2:80990313-80990332 Msa0931480:three_prime_UTR 60.0%
TTGCAAGCAGTCTTGCGGGC+GGG + chr6_2:80990366-80990385 None:intergenic 60.0%
GTTGCAAGCAGTCTTGCGGG+CGG + chr6_2:80990367-80990386 None:intergenic 60.0%
AACCAAGCTGCTGCTCTCCC+TGG - chr6_2:80990429-80990448 Msa0931480:three_prime_UTR 60.0%
GCTGCTCTCCCTGGCAAATG+TGG - chr6_2:80990438-80990457 Msa0931480:three_prime_UTR 60.0%
TGCAAGCAGTCTTGCGGGCG+GGG + chr6_2:80990365-80990384 None:intergenic 65.0%
TGCCAGGGAGAGCAGCAGCT+TGG + chr6_2:80990434-80990453 None:intergenic 65.0%
TGCAAGCAGTCTTGCGGGCG+GGG + chr6_2:80990365-80990384 None:intergenic 65.0%
TGCCAGGGAGAGCAGCAGCT+TGG + chr6_2:80990434-80990453 None:intergenic 65.0%
CTTGCGGGCGGGGCCGTTGT+TGG + chr6_2:80990355-80990374 None:intergenic 75.0%
CTTGCGGGCGGGGCCGTTGT+TGG + chr6_2:80990355-80990374 None:intergenic 75.0%
! GCGGGCGGGGCCGTTGTTGG+CGG + chr6_2:80990352-80990371 None:intergenic 80.0%
! GCGGGCGGGGCCGTTGTTGG+CGG + chr6_2:80990352-80990371 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 80990162 80991698 80990162 ID=Msa0931480;Name=Msa0931480
chr6_2 mRNA 80990162 80991698 80990162 ID=Msa0931480-mRNA-1;Parent=Msa0931480;Name=Msa0931480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0.5|1|1|1|2|351|109
chr6_2 exon 80990162 80990525 80990162 ID=Msa0931480-mRNA-1:exon:14245;Parent=Msa0931480-mRNA-1
chr6_2 exon 80991382 80991698 80991382 ID=Msa0931480-mRNA-1:exon:14244;Parent=Msa0931480-mRNA-1
chr6_2 CDS 80991382 80991698 80991382 ID=Msa0931480-mRNA-1:cds;Parent=Msa0931480-mRNA-1
chr6_2 CDS 80990513 80990525 80990513 ID=Msa0931480-mRNA-1:cds;Parent=Msa0931480-mRNA-1
chr6_2 three_prime_UTR 80990162 80990512 80990162 ID=Msa0931480-mRNA-1:three_prime_utr;Parent=Msa0931480-mRNA-1
Gene Sequence

>Msa0931480

ATGGCAAGCATGAGAGTTGCATTTTTGGCTGCAATTATGTGCATGGTGGTGGTTACTGCACCAATGGCAGAGGCAGCAGTCACATGTGGACAAGTAGTAGGTTTCCTTACTCCATGCATTACTTATCTTCAAGGTGGTGCTGGTCCATCTGCAGCATGCTGTGGTGGAGTGAGGAGACTTAACGGTGCCGCCAACAACGGCCCCGCCCGCAAGACTGCTTGCAACTGCTTGAAAAGTGCTGCTGGTTCCATTGCTCGTTTGAATAACAACCAAGCTGCTGCTCTCCCTGGCAAATGTGGTGTTAACATTCCCTACAACATCAGGTTCTAA

Protein sequence

>Msa0931480

MASMRVAFLAAIMCMVVVTAPMAEAAVTCGQVVGFLTPCITYLQGGAGPSAACCGGVRRLNGAANNGPARKTACNCLKSAAGSIARLNNNQAAALPGKCGVNIPYNIRF*