AlfalfaGEDB | Msa0046170

M. sativa cultivar zhongmu-4 / Msa0046170

KEGG: K01859
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576
PFAM: PF02431.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046170	sp\|P28012\|CFI1_MEDSA	100.000	222	0	0	1	222	1	222	6.02e-162	449

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0046170	Msa0090380	0.817445	3.286226e-52	-8.615850e-47
Msa0046170	Msa0137860	0.805003	1.646096e-49	-8.615850e-47
Msa0046170	Msa0139530	0.990592	2.266864e-183	-8.615850e-47
Msa0046170	Msa0590390	0.813084	3.060496e-51	-8.615850e-47
Msa0046170	Msa0615200	0.810973	8.830076e-51	-8.615850e-47
Msa0046170	Msa0615210	0.822092	2.849352e-53	-8.615850e-47
Msa0046170	Msa0652590	0.812553	4.001952e-51	-8.615850e-47
Msa0046170	Msa0754480	0.808974	2.378624e-50	-8.615850e-47
Msa0046170	Msa0967750	0.981035	1.279504e-151	-8.615850e-47
Msa0046170	Msa1027340	0.823331	1.466860e-53	-8.615850e-47
Msa0046170	Msa1027400	0.830301	3.172663e-55	-8.615850e-47
Msa0046170	Msa1034450	0.813914	2.011026e-51	-8.615850e-47
Msa0046170	Msa1074200	0.809878	1.521845e-50	-8.615850e-47
Msa0046170	Msa1077970	0.814865	1.239525e-51	-8.615850e-47
Msa0046170	Msa1114670	0.829339	5.441617e-55	-8.615850e-47
Msa0046170	Msa1133700	0.805138	1.542345e-49	-8.615850e-47
Msa0046170	Msa1154570	0.824316	8.620852e-54	-8.615850e-47
Msa0046170	Msa1159170	0.818828	1.599104e-52	-8.615850e-47
Msa0046170	Msa1409690	0.992694	7.443545e-195	-8.615850e-47
Msa0046170	Msa1433410	0.813592	2.367867e-51	-8.615850e-47
Msa0046170	Msa1436490	0.981520	8.647888e-153	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046170	MtrunA17_Chr1g0213011	98.198	222	4	0	1	222	1	222	1.01e-161	445
Msa0046170	MtrunA17_Chr1g0213021	62.896	221	82	0	2	222	5	225	7.70e-98	284
Msa0046170	MtrunA17_Chr1g0213031	61.187	219	85	0	2	220	5	223	8.08e-93	271
Msa0046170	MtrunA17_Chr1g0213041	54.884	215	95	1	4	216	5	219	1.75e-80	240
Msa0046170	MtrunA17_Chr1g0213051	52.804	214	99	1	4	215	5	218	7.94e-78	233
Msa0046170	MtrunA17_Chr7g0224381	50.000	162	81	0	4	165	5	166	4.81e-56	176
Msa0046170	MtrunA17_Chr3g0128761	32.086	187	116	5	29	209	15	196	1.83e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0046170	AT3G55120.1	49.048	210	107	0	4	213	15	224	3.16e-67	207
Msa0046170	AT5G66230.2	42.453	212	114	1	4	215	5	208	1.27e-53	180
Msa0046170	AT5G66220.1	42.767	159	91	0	57	215	1	159	5.51e-44	145
Msa0046170	AT5G05270.1	28.708	209	142	4	8	214	6	209	6.90e-13	65.5
Msa0046170	AT5G05270.2	28.708	209	142	4	8	214	6	209	6.90e-13	65.5

Find 80 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGACCAATTCACCTATTT+TGG	0.093565	1_1:-78228246	None:intergenic
AGCTATGATGTTTCAGATTT+TGG	0.159725	1_1:-78228358	None:intergenic
CAATCACCTGATGGAATATT+AGG	0.209322	1_1:+78229235	Msa0046170:CDS
CACTGCCATAGGTGTTTATT+TGG	0.211608	1_1:+78228547	Msa0046170:CDS
TTGAAATCAGTTGGAACTTA+TGG	0.230001	1_1:+78229127	Msa0046170:CDS
TTCTTGTGCTGCAACGCTTT+TGG	0.248420	1_1:-78229602	None:intergenic
AATTAGAGGGTCAAAGATTA+GGG	0.310626	1_1:+78229051	Msa0046170:CDS
CTTGATGAAGTTTCCTTCAA+TGG	0.330932	1_1:-78228522	None:intergenic
CCCTGATCTTAAGCGCTGTT+TGG	0.332738	1_1:+78229496	Msa0046170:CDS
AATAATTAAGAACAAGAATA+TGG	0.334406	1_1:+78228388	Msa0046170:exon
AACGAGGGTGCTTTCAAGAT+TGG	0.337469	1_1:+78229542	Msa0046170:CDS
TAATTAGAGGGTCAAAGATT+AGG	0.343487	1_1:+78229050	Msa0046170:CDS
AAAATCCAAAATAGGTGAAT+TGG	0.349824	1_1:+78228241	Msa0046170:five_prime_UTR
TCATATTTCCTCGGTGGCGC+TGG	0.355424	1_1:+78228485	Msa0046170:CDS
CCCTTTGAAAAGTTAATTAG+AGG	0.361486	1_1:+78229037	Msa0046170:CDS
AATCACCTGATGGAATATTA+GGG	0.365814	1_1:+78229236	Msa0046170:CDS
TCAAATAAAATACATGCAAC+TGG	0.398245	1_1:+78228264	Msa0046170:five_prime_UTR
GCCAAACAGCGCTTAAGATC+AGG	0.410390	1_1:-78229497	None:intergenic
GCACCAGGTGGAAAATTAAC+AGG	0.410631	1_1:-78229196	None:intergenic
ACCGAGGAAATATGATTTGC+CGG	0.416952	1_1:-78228477	None:intergenic
AGATGATTTACCCTTCCATT+TGG	0.439741	1_1:-78228597	None:intergenic
ACTTGCGTTAAGTGAAGAAC+GGG	0.443654	1_1:-78228330	None:intergenic
GGCAGTTTCATCAGCAGTGT+TGG	0.459798	1_1:+78229445	Msa0046170:CDS
CTCGGTGGCGCTGGGGAGAG+AGG	0.461142	1_1:+78228494	Msa0046170:CDS
CATATTTCCTCGGTGGCGCT+GGG	0.461249	1_1:+78228486	Msa0046170:CDS
GGAACGAAATAAACGCCGCC+TGG	0.467910	1_1:+78228285	Msa0046170:five_prime_UTR
AAATATGATTTGCCGGTGAC+CGG	0.472992	1_1:-78228470	None:intergenic
ACCGGAGAGGTAACCACCGC+TGG	0.477165	1_1:-78228452	None:intergenic
TGAGTACTCAAGGAAGGTTA+TGG	0.487878	1_1:+78229087	Msa0046170:CDS
TAACCACCGCTGGGTATTCA+AGG	0.488480	1_1:-78228442	None:intergenic
GGATACAAGTATACCAGAAA+AGG	0.490457	1_1:+78229400	Msa0046170:CDS
AATAGGAAGCGGTCTGGCCC+AGG	0.492465	1_1:-78228303	None:intergenic
CCCAGCGGTGGTTACCTCTC+CGG	0.492838	1_1:+78228451	Msa0046170:CDS
TATTATTGATACTAATAAGA+AGG	0.499753	1_1:-78229679	None:intergenic
TGGCTTCACTAGCTGCCAAA+TGG	0.503292	1_1:+78228582	Msa0046170:CDS
GTTACAGCTTAGTTTCTCTC+CGG	0.504378	1_1:+78229379	Msa0046170:intron
GAGAGAGGATTGACCATTGA+AGG	0.509487	1_1:+78228509	Msa0046170:CDS
CTAACCCCTAATATTCCATC+AGG	0.511312	1_1:-78229241	None:intergenic
ATCTTCCAAATAAACACCTA+TGG	0.512141	1_1:-78228552	None:intergenic
GTGGTTACCTCTCCGGTCAC+CGG	0.524005	1_1:+78228458	Msa0046170:CDS
TTCACTAGCTGCCAAATGGA+AGG	0.526249	1_1:+78228586	Msa0046170:CDS
CCAAACAGCGCTTAAGATCA+GGG	0.532079	1_1:-78229496	None:intergenic
TTCTACAGGCAATCACCTGA+TGG	0.554083	1_1:+78229226	Msa0046170:CDS
GAACGAAATAAACGCCGCCT+GGG	0.554703	1_1:+78228286	Msa0046170:five_prime_UTR
GACTTGCGTTAAGTGAAGAA+CGG	0.560970	1_1:-78228331	None:intergenic
GGCTGCACTCATAGAGAACA+AGG	0.569164	1_1:+78229424	Msa0046170:CDS
ACCGGCAAATCATATTTCCT+CGG	0.576452	1_1:+78228476	Msa0046170:CDS
TGAGTGGTCCTGAGTACTCA+AGG	0.577740	1_1:+78229077	Msa0046170:CDS
CTCTCTCCCCAGCGCCACCG+AGG	0.582911	1_1:-78228493	None:intergenic
CTGTAGAAAACAGAGGCACC+AGG	0.591901	1_1:-78229211	None:intergenic
CCTTTGAAAAGTTAATTAGA+GGG	0.595496	1_1:+78229038	Msa0046170:CDS
ATTACCTGCGTTGTTGAACG+AGG	0.600190	1_1:+78229526	Msa0046170:CDS
TGATGTCTCTGTAAAAGTCG+AGG	0.602205	1_1:-78228637	None:intergenic
ATAACCTTCCTTGAGTACTC+AGG	0.607676	1_1:-78229085	None:intergenic
TTCATCAAGTTCACTGCCAT+AGG	0.610295	1_1:+78228536	Msa0046170:CDS
GCAGTGTTGGAGACTATGAT+CGG	0.622152	1_1:+78229458	Msa0046170:CDS
AGGAAGCGGTCTGGCCCAGG+CGG	0.623344	1_1:-78228300	None:intergenic
TCACTAGCTGCCAAATGGAA+GGG	0.624312	1_1:+78228587	Msa0046170:CDS
GTGGCACACTTGAAATCAGT+TGG	0.625898	1_1:+78229118	Msa0046170:CDS
GATGTCTCTGTAAAAGTCGA+GGG	0.629213	1_1:-78228636	None:intergenic
CCGGAGAGGTAACCACCGCT+GGG	0.632340	1_1:-78228451	None:intergenic
TACAAGTATACCAGAAAAGG+AGG	0.632960	1_1:+78229403	Msa0046170:CDS
TGGTCCTGAGTACTCAAGGA+AGG	0.639707	1_1:+78229081	Msa0046170:CDS
GGCAAATCATATTTCCTCGG+TGG	0.648065	1_1:+78228479	Msa0046170:CDS
AAGGTTCTCCACAGTGATTG+CGG	0.648293	1_1:-78228423	None:intergenic
ATATTTCCTCGGTGGCGCTG+GGG	0.654176	1_1:+78228487	Msa0046170:CDS
GCACCCTCGTTCAACAACGC+AGG	0.670342	1_1:-78229530	None:intergenic
TGATTTGCCGGTGACCGGAG+AGG	0.671162	1_1:-78228465	None:intergenic
TTATTTGGAAGATATAGCAG+TGG	0.671898	1_1:+78228562	Msa0046170:CDS
GAACCTTGAATACCCAGCGG+TGG	0.677026	1_1:+78228439	Msa0046170:CDS
CAAACAGCGCTTAAGATCAG+GGG	0.682290	1_1:-78229495	None:intergenic
TTACCTGCGTTGTTGAACGA+GGG	0.686961	1_1:+78229527	Msa0046170:CDS
ATCACCTGATGGAATATTAG+GGG	0.689762	1_1:+78229237	Msa0046170:CDS
TCAAAGATTAGGGAATTGAG+TGG	0.698363	1_1:+78229061	Msa0046170:CDS
TAGAAAACAGAGGCACCAGG+TGG	0.700225	1_1:-78229208	None:intergenic
GCAGCACAAGAATGAGACCA+TGG	0.722638	1_1:+78229613	Msa0046170:three_prime_UTR
ATCAATCACCGCAATCACTG+TGG	0.724881	1_1:+78228415	Msa0046170:CDS
GAAGGTTATGGAGAACTGTG+TGG	0.734369	1_1:+78229099	Msa0046170:CDS
TGATTGCCTGTAGAAAACAG+AGG	0.767471	1_1:-78229218	None:intergenic
GGAGAACCTTGAATACCCAG+CGG	0.782943	1_1:+78228436	Msa0046170:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAATTAAGAACAAGAATA+TGG	+	chr1_1:78228388-78228407	Msa0046170:exon	15.0%
!!	AAATCATTTAATTAATTGCA+AGG	-	chr1_1:78228703-78228722	None:intergenic	15.0%
!!!	TGATAAATTGATAATTTTGT+AGG	+	chr1_1:78229013-78229032	Msa0046170:intron	15.0%
!!!	TTTTAATATACTAGTATTAG+TGG	-	chr1_1:78229353-78229372	None:intergenic	15.0%
!!	TATTATTGATACTAATAAGA+AGG	-	chr1_1:78229682-78229701	None:intergenic	15.0%
!!	AATAATTAAGAACAAGAATA+TGG	+	chr1_1:78228388-78228407	Msa0046170:exon	15.0%
!!	AAATCATTTAATTAATTGCA+AGG	-	chr1_1:78228703-78228722	None:intergenic	15.0%
!!!	TGATAAATTGATAATTTTGT+AGG	+	chr1_1:78229013-78229032	Msa0046170:intron	15.0%
!!!	TTTTAATATACTAGTATTAG+TGG	-	chr1_1:78229353-78229372	None:intergenic	15.0%
!!	TATTATTGATACTAATAAGA+AGG	-	chr1_1:78229682-78229701	None:intergenic	15.0%
!!	AGAAAAGAAAAATCCAAAAT+AGG	+	chr1_1:78228233-78228252	Msa0046170:five_prime_UTR	20.0%
!!	GTTAGACTTTAATTAATTCT+TGG	-	chr1_1:78228931-78228950	None:intergenic	20.0%
!!	AATTAAAGTCTAACATACAA+CGG	+	chr1_1:78228937-78228956	Msa0046170:intron	20.0%
!!	AGTTAAGAAACAGAATTAAT+TGG	-	chr1_1:78229275-78229294	None:intergenic	20.0%
!!!	TTTCTTAACTATTTTAGTTG+AGG	+	chr1_1:78229285-78229304	Msa0046170:intron	20.0%
!!	AGAAAAGAAAAATCCAAAAT+AGG	+	chr1_1:78228233-78228252	Msa0046170:five_prime_UTR	20.0%
!!	GTTAGACTTTAATTAATTCT+TGG	-	chr1_1:78228931-78228950	None:intergenic	20.0%
!!	AATTAAAGTCTAACATACAA+CGG	+	chr1_1:78228937-78228956	Msa0046170:intron	20.0%
!!	AGTTAAGAAACAGAATTAAT+TGG	-	chr1_1:78229275-78229294	None:intergenic	20.0%
!!!	TTTCTTAACTATTTTAGTTG+AGG	+	chr1_1:78229285-78229304	Msa0046170:intron	20.0%
!	AAAATCCAAAATAGGTGAAT+TGG	+	chr1_1:78228241-78228260	Msa0046170:five_prime_UTR	25.0%
!	TCAAATAAAATACATGCAAC+TGG	+	chr1_1:78228264-78228283	Msa0046170:five_prime_UTR	25.0%
!!!	CATTTTTTAACATATGAAGC+TGG	+	chr1_1:78228758-78228777	Msa0046170:intron	25.0%
!	TCAATAAGACTCATATGATT+TGG	-	chr1_1:78228896-78228915	None:intergenic	25.0%
!!	CCTCTAATTAACTTTTCAAA+GGG	-	chr1_1:78229040-78229059	None:intergenic	25.0%
!!	CCTTTGAAAAGTTAATTAGA+GGG	+	chr1_1:78229038-78229057	Msa0046170:CDS	25.0%
!	ATATACTAGTATTAGTGGAA+AGG	-	chr1_1:78229348-78229367	None:intergenic	25.0%
!	AAAATCCAAAATAGGTGAAT+TGG	+	chr1_1:78228241-78228260	Msa0046170:five_prime_UTR	25.0%
!	TCAAATAAAATACATGCAAC+TGG	+	chr1_1:78228264-78228283	Msa0046170:five_prime_UTR	25.0%
!!!	CATTTTTTAACATATGAAGC+TGG	+	chr1_1:78228758-78228777	Msa0046170:intron	25.0%
!	TCAATAAGACTCATATGATT+TGG	-	chr1_1:78228896-78228915	None:intergenic	25.0%
!!	CCTCTAATTAACTTTTCAAA+GGG	-	chr1_1:78229040-78229059	None:intergenic	25.0%
!!	CCTTTGAAAAGTTAATTAGA+GGG	+	chr1_1:78229038-78229057	Msa0046170:CDS	25.0%
!	ATATACTAGTATTAGTGGAA+AGG	-	chr1_1:78229348-78229367	None:intergenic	25.0%
!	TTTGACCAATTCACCTATTT+TGG	-	chr1_1:78228249-78228268	None:intergenic	30.0%
!	AGCTATGATGTTTCAGATTT+TGG	-	chr1_1:78228361-78228380	None:intergenic	30.0%
	ATCTTCCAAATAAACACCTA+TGG	-	chr1_1:78228555-78228574	None:intergenic	30.0%
	TTATTTGGAAGATATAGCAG+TGG	+	chr1_1:78228562-78228581	Msa0046170:CDS	30.0%
	GTGAGTAAAAACTAGTATGA+AGG	-	chr1_1:78228827-78228846	None:intergenic	30.0%
!!	CTCATATGATTTGGTTGATT+AGG	-	chr1_1:78228887-78228906	None:intergenic	30.0%
!!	AGTCTTATTGATGTAGAGTT+CGG	+	chr1_1:78228905-78228924	Msa0046170:intron	30.0%
!	CCCTTTGAAAAGTTAATTAG+AGG	+	chr1_1:78229037-78229056	Msa0046170:CDS	30.0%
!	CCCTCTAATTAACTTTTCAA+AGG	-	chr1_1:78229041-78229060	None:intergenic	30.0%
	TAATTAGAGGGTCAAAGATT+AGG	+	chr1_1:78229050-78229069	Msa0046170:CDS	30.0%
	AATTAGAGGGTCAAAGATTA+GGG	+	chr1_1:78229051-78229070	Msa0046170:CDS	30.0%
	TTGAAATCAGTTGGAACTTA+TGG	+	chr1_1:78229127-78229146	Msa0046170:CDS	30.0%
	AATCACCTGATGGAATATTA+GGG	+	chr1_1:78229236-78229255	Msa0046170:CDS	30.0%
!!	TTTTCTGGTATACTTGTATC+CGG	-	chr1_1:78229401-78229420	None:intergenic	30.0%
	TGTAGACTTAAAAAAGTCCA+TGG	-	chr1_1:78229633-78229652	None:intergenic	30.0%
!	TTTGACCAATTCACCTATTT+TGG	-	chr1_1:78228249-78228268	None:intergenic	30.0%
!	AGCTATGATGTTTCAGATTT+TGG	-	chr1_1:78228361-78228380	None:intergenic	30.0%
	ATCTTCCAAATAAACACCTA+TGG	-	chr1_1:78228555-78228574	None:intergenic	30.0%
	TTATTTGGAAGATATAGCAG+TGG	+	chr1_1:78228562-78228581	Msa0046170:CDS	30.0%
	GTGAGTAAAAACTAGTATGA+AGG	-	chr1_1:78228827-78228846	None:intergenic	30.0%
!!	CTCATATGATTTGGTTGATT+AGG	-	chr1_1:78228887-78228906	None:intergenic	30.0%
!!	AGTCTTATTGATGTAGAGTT+CGG	+	chr1_1:78228905-78228924	Msa0046170:intron	30.0%
!	CCCTTTGAAAAGTTAATTAG+AGG	+	chr1_1:78229037-78229056	Msa0046170:CDS	30.0%
!	CCCTCTAATTAACTTTTCAA+AGG	-	chr1_1:78229041-78229060	None:intergenic	30.0%
	TAATTAGAGGGTCAAAGATT+AGG	+	chr1_1:78229050-78229069	Msa0046170:CDS	30.0%
	AATTAGAGGGTCAAAGATTA+GGG	+	chr1_1:78229051-78229070	Msa0046170:CDS	30.0%
	TTGAAATCAGTTGGAACTTA+TGG	+	chr1_1:78229127-78229146	Msa0046170:CDS	30.0%
	AATCACCTGATGGAATATTA+GGG	+	chr1_1:78229236-78229255	Msa0046170:CDS	30.0%
!!	TTTTCTGGTATACTTGTATC+CGG	-	chr1_1:78229401-78229420	None:intergenic	30.0%
	TGTAGACTTAAAAAAGTCCA+TGG	-	chr1_1:78229633-78229652	None:intergenic	30.0%
!!	AGTGAAGAACGGGTTTTAAT+AGG	-	chr1_1:78228323-78228342	None:intergenic	35.0%
	CTTGATGAAGTTTCCTTCAA+TGG	-	chr1_1:78228525-78228544	None:intergenic	35.0%
	AGATGATTTACCCTTCCATT+TGG	-	chr1_1:78228600-78228619	None:intergenic	35.0%
!	TTTTACAGAGACATCATCTC+AGG	+	chr1_1:78228644-78228663	Msa0046170:CDS	35.0%
	TCAAAGATTAGGGAATTGAG+TGG	+	chr1_1:78229061-78229080	Msa0046170:CDS	35.0%
	CAATCACCTGATGGAATATT+AGG	+	chr1_1:78229235-78229254	Msa0046170:CDS	35.0%
	ATCACCTGATGGAATATTAG+GGG	+	chr1_1:78229237-78229256	Msa0046170:CDS	35.0%
	GGATACAAGTATACCAGAAA+AGG	+	chr1_1:78229400-78229419	Msa0046170:CDS	35.0%
	TACAAGTATACCAGAAAAGG+AGG	+	chr1_1:78229403-78229422	Msa0046170:CDS	35.0%
!!	AGTGAAGAACGGGTTTTAAT+AGG	-	chr1_1:78228323-78228342	None:intergenic	35.0%
	CTTGATGAAGTTTCCTTCAA+TGG	-	chr1_1:78228525-78228544	None:intergenic	35.0%
	AGATGATTTACCCTTCCATT+TGG	-	chr1_1:78228600-78228619	None:intergenic	35.0%
!	TTTTACAGAGACATCATCTC+AGG	+	chr1_1:78228644-78228663	Msa0046170:CDS	35.0%
	TCAAAGATTAGGGAATTGAG+TGG	+	chr1_1:78229061-78229080	Msa0046170:CDS	35.0%
	CAATCACCTGATGGAATATT+AGG	+	chr1_1:78229235-78229254	Msa0046170:CDS	35.0%
	ATCACCTGATGGAATATTAG+GGG	+	chr1_1:78229237-78229256	Msa0046170:CDS	35.0%
	GGATACAAGTATACCAGAAA+AGG	+	chr1_1:78229400-78229419	Msa0046170:CDS	35.0%
	TACAAGTATACCAGAAAAGG+AGG	+	chr1_1:78229403-78229422	Msa0046170:CDS	35.0%
!!	GAACGGGTTTTAATAGGAAG+CGG	-	chr1_1:78228317-78228336	None:intergenic	40.0%
	ACTTGCGTTAAGTGAAGAAC+GGG	-	chr1_1:78228333-78228352	None:intergenic	40.0%
	GACTTGCGTTAAGTGAAGAA+CGG	-	chr1_1:78228334-78228353	None:intergenic	40.0%
!	AAATATGATTTGCCGGTGAC+CGG	-	chr1_1:78228473-78228492	None:intergenic	40.0%
	ACCGGCAAATCATATTTCCT+CGG	+	chr1_1:78228476-78228495	Msa0046170:CDS	40.0%
!	ACCGAGGAAATATGATTTGC+CGG	-	chr1_1:78228480-78228499	None:intergenic	40.0%
	TTCATCAAGTTCACTGCCAT+AGG	+	chr1_1:78228536-78228555	Msa0046170:CDS	40.0%
	CACTGCCATAGGTGTTTATT+TGG	+	chr1_1:78228547-78228566	Msa0046170:CDS	40.0%
	GATGTCTCTGTAAAAGTCGA+GGG	-	chr1_1:78228639-78228658	None:intergenic	40.0%
	TGATGTCTCTGTAAAAGTCG+AGG	-	chr1_1:78228640-78228659	None:intergenic	40.0%
	ATAACCTTCCTTGAGTACTC+AGG	-	chr1_1:78229088-78229107	None:intergenic	40.0%
	TGAGTACTCAAGGAAGGTTA+TGG	+	chr1_1:78229087-78229106	Msa0046170:CDS	40.0%
!	AAGCCTGTTAATTTTCCACC+TGG	+	chr1_1:78229193-78229212	Msa0046170:CDS	40.0%
	TGATTGCCTGTAGAAAACAG+AGG	-	chr1_1:78229221-78229240	None:intergenic	40.0%
	CTAACCCCTAATATTCCATC+AGG	-	chr1_1:78229244-78229263	None:intergenic	40.0%
	GTTACAGCTTAGTTTCTCTC+CGG	+	chr1_1:78229379-78229398	Msa0046170:intron	40.0%
	TGAGTAGAGTTGCTTAACTG+AGG	+	chr1_1:78229835-78229854	Msa0046170:three_prime_UTR	40.0%
!!	GAACGGGTTTTAATAGGAAG+CGG	-	chr1_1:78228317-78228336	None:intergenic	40.0%
	ACTTGCGTTAAGTGAAGAAC+GGG	-	chr1_1:78228333-78228352	None:intergenic	40.0%
	GACTTGCGTTAAGTGAAGAA+CGG	-	chr1_1:78228334-78228353	None:intergenic	40.0%
!	AAATATGATTTGCCGGTGAC+CGG	-	chr1_1:78228473-78228492	None:intergenic	40.0%
	ACCGGCAAATCATATTTCCT+CGG	+	chr1_1:78228476-78228495	Msa0046170:CDS	40.0%
!	ACCGAGGAAATATGATTTGC+CGG	-	chr1_1:78228480-78228499	None:intergenic	40.0%
	TTCATCAAGTTCACTGCCAT+AGG	+	chr1_1:78228536-78228555	Msa0046170:CDS	40.0%
	CACTGCCATAGGTGTTTATT+TGG	+	chr1_1:78228547-78228566	Msa0046170:CDS	40.0%
	GATGTCTCTGTAAAAGTCGA+GGG	-	chr1_1:78228639-78228658	None:intergenic	40.0%
	TGATGTCTCTGTAAAAGTCG+AGG	-	chr1_1:78228640-78228659	None:intergenic	40.0%
	ATAACCTTCCTTGAGTACTC+AGG	-	chr1_1:78229088-78229107	None:intergenic	40.0%
	TGAGTACTCAAGGAAGGTTA+TGG	+	chr1_1:78229087-78229106	Msa0046170:CDS	40.0%
!	AAGCCTGTTAATTTTCCACC+TGG	+	chr1_1:78229193-78229212	Msa0046170:CDS	40.0%
	TGATTGCCTGTAGAAAACAG+AGG	-	chr1_1:78229221-78229240	None:intergenic	40.0%
	CTAACCCCTAATATTCCATC+AGG	-	chr1_1:78229244-78229263	None:intergenic	40.0%
	GTTACAGCTTAGTTTCTCTC+CGG	+	chr1_1:78229379-78229398	Msa0046170:intron	40.0%
!!	GGTTTTAATAGGAAGCGGTC+TGG	-	chr1_1:78228312-78228331	None:intergenic	45.0%
	ATCAATCACCGCAATCACTG+TGG	+	chr1_1:78228415-78228434	Msa0046170:CDS	45.0%
	AAGGTTCTCCACAGTGATTG+CGG	-	chr1_1:78228426-78228445	None:intergenic	45.0%
	GGCAAATCATATTTCCTCGG+TGG	+	chr1_1:78228479-78228498	Msa0046170:CDS	45.0%
	GAGAGAGGATTGACCATTGA+AGG	+	chr1_1:78228509-78228528	Msa0046170:CDS	45.0%
	TTCACTAGCTGCCAAATGGA+AGG	+	chr1_1:78228586-78228605	Msa0046170:CDS	45.0%
	TCACTAGCTGCCAAATGGAA+GGG	+	chr1_1:78228587-78228606	Msa0046170:CDS	45.0%
	GAAGGTTATGGAGAACTGTG+TGG	+	chr1_1:78229099-78229118	Msa0046170:CDS	45.0%
	GTGGCACACTTGAAATCAGT+TGG	+	chr1_1:78229118-78229137	Msa0046170:CDS	45.0%
	GCACCAGGTGGAAAATTAAC+AGG	-	chr1_1:78229199-78229218	None:intergenic	45.0%
	TTCTACAGGCAATCACCTGA+TGG	+	chr1_1:78229226-78229245	Msa0046170:CDS	45.0%
!	GCAGTGTTGGAGACTATGAT+CGG	+	chr1_1:78229458-78229477	Msa0046170:CDS	45.0%
	CAAACAGCGCTTAAGATCAG+GGG	-	chr1_1:78229498-78229517	None:intergenic	45.0%
	CCAAACAGCGCTTAAGATCA+GGG	-	chr1_1:78229499-78229518	None:intergenic	45.0%
	ATTACCTGCGTTGTTGAACG+AGG	+	chr1_1:78229526-78229545	Msa0046170:CDS	45.0%
	TTACCTGCGTTGTTGAACGA+GGG	+	chr1_1:78229527-78229546	Msa0046170:CDS	45.0%
!!	AACGAGGGTGCTTTCAAGAT+TGG	+	chr1_1:78229542-78229561	Msa0046170:CDS	45.0%
!	TTCTTGTGCTGCAACGCTTT+TGG	-	chr1_1:78229605-78229624	None:intergenic	45.0%
!!	GGTTTTAATAGGAAGCGGTC+TGG	-	chr1_1:78228312-78228331	None:intergenic	45.0%
	ATCAATCACCGCAATCACTG+TGG	+	chr1_1:78228415-78228434	Msa0046170:CDS	45.0%
	AAGGTTCTCCACAGTGATTG+CGG	-	chr1_1:78228426-78228445	None:intergenic	45.0%
	GGCAAATCATATTTCCTCGG+TGG	+	chr1_1:78228479-78228498	Msa0046170:CDS	45.0%
	GAGAGAGGATTGACCATTGA+AGG	+	chr1_1:78228509-78228528	Msa0046170:CDS	45.0%
	TTCACTAGCTGCCAAATGGA+AGG	+	chr1_1:78228586-78228605	Msa0046170:CDS	45.0%
	TCACTAGCTGCCAAATGGAA+GGG	+	chr1_1:78228587-78228606	Msa0046170:CDS	45.0%
	GAAGGTTATGGAGAACTGTG+TGG	+	chr1_1:78229099-78229118	Msa0046170:CDS	45.0%
	GTGGCACACTTGAAATCAGT+TGG	+	chr1_1:78229118-78229137	Msa0046170:CDS	45.0%
	GCACCAGGTGGAAAATTAAC+AGG	-	chr1_1:78229199-78229218	None:intergenic	45.0%
	TTCTACAGGCAATCACCTGA+TGG	+	chr1_1:78229226-78229245	Msa0046170:CDS	45.0%
!	GCAGTGTTGGAGACTATGAT+CGG	+	chr1_1:78229458-78229477	Msa0046170:CDS	45.0%
	CAAACAGCGCTTAAGATCAG+GGG	-	chr1_1:78229498-78229517	None:intergenic	45.0%
	CCAAACAGCGCTTAAGATCA+GGG	-	chr1_1:78229499-78229518	None:intergenic	45.0%
	ATTACCTGCGTTGTTGAACG+AGG	+	chr1_1:78229526-78229545	Msa0046170:CDS	45.0%
	TTACCTGCGTTGTTGAACGA+GGG	+	chr1_1:78229527-78229546	Msa0046170:CDS	45.0%
!!	AACGAGGGTGCTTTCAAGAT+TGG	+	chr1_1:78229542-78229561	Msa0046170:CDS	45.0%
!	TTCTTGTGCTGCAACGCTTT+TGG	-	chr1_1:78229605-78229624	None:intergenic	45.0%
	GAACGAAATAAACGCCGCCT+GGG	+	chr1_1:78228286-78228305	Msa0046170:five_prime_UTR	50.0%
	GGAGAACCTTGAATACCCAG+CGG	+	chr1_1:78228436-78228455	Msa0046170:CDS	50.0%
	TAACCACCGCTGGGTATTCA+AGG	-	chr1_1:78228445-78228464	None:intergenic	50.0%
	TGGCTTCACTAGCTGCCAAA+TGG	+	chr1_1:78228582-78228601	Msa0046170:CDS	50.0%
	GACAGACACTCCTCAATCCT+CGG	-	chr1_1:78228805-78228824	None:intergenic	50.0%
	TGAGTGGTCCTGAGTACTCA+AGG	+	chr1_1:78229077-78229096	Msa0046170:CDS	50.0%
	TGGTCCTGAGTACTCAAGGA+AGG	+	chr1_1:78229081-78229100	Msa0046170:CDS	50.0%
!!	TAGAAAACAGAGGCACCAGG+TGG	-	chr1_1:78229211-78229230	None:intergenic	50.0%
!!	CTGTAGAAAACAGAGGCACC+AGG	-	chr1_1:78229214-78229233	None:intergenic	50.0%
!	CTGGTGCCTCTGTTTTCTAC+AGG	+	chr1_1:78229212-78229231	Msa0046170:CDS	50.0%
!	ATGAGTGCAGCCTCCTTTTC+TGG	-	chr1_1:78229416-78229435	None:intergenic	50.0%
	GGCTGCACTCATAGAGAACA+AGG	+	chr1_1:78229424-78229443	Msa0046170:CDS	50.0%
	GGCAGTTTCATCAGCAGTGT+TGG	+	chr1_1:78229445-78229464	Msa0046170:CDS	50.0%
!	CCCTGATCTTAAGCGCTGTT+TGG	+	chr1_1:78229496-78229515	Msa0046170:CDS	50.0%
	GCCAAACAGCGCTTAAGATC+AGG	-	chr1_1:78229500-78229519	None:intergenic	50.0%
	GCAGCACAAGAATGAGACCA+TGG	+	chr1_1:78229613-78229632	Msa0046170:three_prime_UTR	50.0%
	GAACGAAATAAACGCCGCCT+GGG	+	chr1_1:78228286-78228305	Msa0046170:five_prime_UTR	50.0%
	GGAGAACCTTGAATACCCAG+CGG	+	chr1_1:78228436-78228455	Msa0046170:CDS	50.0%
	TAACCACCGCTGGGTATTCA+AGG	-	chr1_1:78228445-78228464	None:intergenic	50.0%
	TGGCTTCACTAGCTGCCAAA+TGG	+	chr1_1:78228582-78228601	Msa0046170:CDS	50.0%
	GACAGACACTCCTCAATCCT+CGG	-	chr1_1:78228805-78228824	None:intergenic	50.0%
	TGAGTGGTCCTGAGTACTCA+AGG	+	chr1_1:78229077-78229096	Msa0046170:CDS	50.0%
	TGGTCCTGAGTACTCAAGGA+AGG	+	chr1_1:78229081-78229100	Msa0046170:CDS	50.0%
!!	TAGAAAACAGAGGCACCAGG+TGG	-	chr1_1:78229211-78229230	None:intergenic	50.0%
!!	CTGTAGAAAACAGAGGCACC+AGG	-	chr1_1:78229214-78229233	None:intergenic	50.0%
!	CTGGTGCCTCTGTTTTCTAC+AGG	+	chr1_1:78229212-78229231	Msa0046170:CDS	50.0%
!	ATGAGTGCAGCCTCCTTTTC+TGG	-	chr1_1:78229416-78229435	None:intergenic	50.0%
	GGCTGCACTCATAGAGAACA+AGG	+	chr1_1:78229424-78229443	Msa0046170:CDS	50.0%
	GGCAGTTTCATCAGCAGTGT+TGG	+	chr1_1:78229445-78229464	Msa0046170:CDS	50.0%
!	CCCTGATCTTAAGCGCTGTT+TGG	+	chr1_1:78229496-78229515	Msa0046170:CDS	50.0%
	GCCAAACAGCGCTTAAGATC+AGG	-	chr1_1:78229500-78229519	None:intergenic	50.0%
	GCAGCACAAGAATGAGACCA+TGG	+	chr1_1:78229613-78229632	Msa0046170:three_prime_UTR	50.0%
	GGAACGAAATAAACGCCGCC+TGG	+	chr1_1:78228285-78228304	Msa0046170:five_prime_UTR	55.0%
	GAACCTTGAATACCCAGCGG+TGG	+	chr1_1:78228439-78228458	Msa0046170:CDS	55.0%
	TCATATTTCCTCGGTGGCGC+TGG	+	chr1_1:78228485-78228504	Msa0046170:CDS	55.0%
	CATATTTCCTCGGTGGCGCT+GGG	+	chr1_1:78228486-78228505	Msa0046170:CDS	55.0%
	ATATTTCCTCGGTGGCGCTG+GGG	+	chr1_1:78228487-78228506	Msa0046170:CDS	55.0%
	GACACATGTCCTCTGATCCG+AGG	+	chr1_1:78228785-78228804	Msa0046170:intron	55.0%
	GTCCTCTGATCCGAGGATTG+AGG	+	chr1_1:78228792-78228811	Msa0046170:intron	55.0%
	CTCCTCAATCCTCGGATCAG+AGG	-	chr1_1:78228797-78228816	None:intergenic	55.0%
	GGAACGAAATAAACGCCGCC+TGG	+	chr1_1:78228285-78228304	Msa0046170:five_prime_UTR	55.0%
	GAACCTTGAATACCCAGCGG+TGG	+	chr1_1:78228439-78228458	Msa0046170:CDS	55.0%
	TCATATTTCCTCGGTGGCGC+TGG	+	chr1_1:78228485-78228504	Msa0046170:CDS	55.0%
	CATATTTCCTCGGTGGCGCT+GGG	+	chr1_1:78228486-78228505	Msa0046170:CDS	55.0%
	ATATTTCCTCGGTGGCGCTG+GGG	+	chr1_1:78228487-78228506	Msa0046170:CDS	55.0%
	GACACATGTCCTCTGATCCG+AGG	+	chr1_1:78228785-78228804	Msa0046170:intron	55.0%
	GTCCTCTGATCCGAGGATTG+AGG	+	chr1_1:78228792-78228811	Msa0046170:intron	55.0%
	CTCCTCAATCCTCGGATCAG+AGG	-	chr1_1:78228797-78228816	None:intergenic	55.0%
	AATAGGAAGCGGTCTGGCCC+AGG	-	chr1_1:78228306-78228325	None:intergenic	60.0%
	GTGGTTACCTCTCCGGTCAC+CGG	+	chr1_1:78228458-78228477	Msa0046170:CDS	60.0%
!	TGATTTGCCGGTGACCGGAG+AGG	-	chr1_1:78228468-78228487	None:intergenic	60.0%
	GCACCCTCGTTCAACAACGC+AGG	-	chr1_1:78229533-78229552	None:intergenic	60.0%
	AATAGGAAGCGGTCTGGCCC+AGG	-	chr1_1:78228306-78228325	None:intergenic	60.0%
	GTGGTTACCTCTCCGGTCAC+CGG	+	chr1_1:78228458-78228477	Msa0046170:CDS	60.0%
!	TGATTTGCCGGTGACCGGAG+AGG	-	chr1_1:78228468-78228487	None:intergenic	60.0%
	GCACCCTCGTTCAACAACGC+AGG	-	chr1_1:78229533-78229552	None:intergenic	60.0%
	CCGGAGAGGTAACCACCGCT+GGG	-	chr1_1:78228454-78228473	None:intergenic	65.0%
	CCCAGCGGTGGTTACCTCTC+CGG	+	chr1_1:78228451-78228470	Msa0046170:CDS	65.0%
	ACCGGAGAGGTAACCACCGC+TGG	-	chr1_1:78228455-78228474	None:intergenic	65.0%
	CCGGAGAGGTAACCACCGCT+GGG	-	chr1_1:78228454-78228473	None:intergenic	65.0%
	CCCAGCGGTGGTTACCTCTC+CGG	+	chr1_1:78228451-78228470	Msa0046170:CDS	65.0%
	ACCGGAGAGGTAACCACCGC+TGG	-	chr1_1:78228455-78228474	None:intergenic	65.0%
	AGGAAGCGGTCTGGCCCAGG+CGG	-	chr1_1:78228303-78228322	None:intergenic	70.0%
	AGGAAGCGGTCTGGCCCAGG+CGG	-	chr1_1:78228303-78228322	None:intergenic	70.0%
	CTCTCTCCCCAGCGCCACCG+AGG	-	chr1_1:78228496-78228515	None:intergenic	75.0%
!	CTCGGTGGCGCTGGGGAGAG+AGG	+	chr1_1:78228494-78228513	Msa0046170:CDS	75.0%
	CTCTCTCCCCAGCGCCACCG+AGG	-	chr1_1:78228496-78228515	None:intergenic	75.0%
!	CTCGGTGGCGCTGGGGAGAG+AGG	+	chr1_1:78228494-78228513	Msa0046170:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	78228225	78229855	78228225	ID=Msa0046170;Name=Msa0046170
chr1_1	mRNA	78228225	78229855	78228225	ID=Msa0046170-mRNA-1;Parent=Msa0046170;Name=Msa0046170-mRNA-1;_AED=0.40;_eAED=0.40;_QI=182\|1\|1\|1\|1\|1\|3\|284\|222
chr1_1	exon	78228225	78228665	78228225	ID=Msa0046170-mRNA-1:exon:26911;Parent=Msa0046170-mRNA-1
chr1_1	exon	78229035	78229258	78229035	ID=Msa0046170-mRNA-1:exon:26912;Parent=Msa0046170-mRNA-1
chr1_1	exon	78229386	78229855	78229386	ID=Msa0046170-mRNA-1:exon:26913;Parent=Msa0046170-mRNA-1
chr1_1	five_prime_UTR	78228225	78228406	78228225	ID=Msa0046170-mRNA-1:five_prime_utr;Parent=Msa0046170-mRNA-1
chr1_1	CDS	78228407	78228665	78228407	ID=Msa0046170-mRNA-1:cds;Parent=Msa0046170-mRNA-1
chr1_1	CDS	78229035	78229258	78229035	ID=Msa0046170-mRNA-1:cds;Parent=Msa0046170-mRNA-1
chr1_1	CDS	78229386	78229571	78229386	ID=Msa0046170-mRNA-1:cds;Parent=Msa0046170-mRNA-1
chr1_1	three_prime_UTR	78229572	78229855	78229572	ID=Msa0046170-mRNA-1:three_prime_utr;Parent=Msa0046170-mRNA-1

Gene Sequence

>Msa0046170

ATGGCTGCATCAATCACCGCAATCACTGTGGAGAACCTTGAATACCCAGCGGTGGTTACCTCTCCGGTCACCGGCAAATCATATTTCCTCGGTGGCGCTGGGGAGAGAGGATTGACCATTGAAGGAAACTTCATCAAGTTCACTGCCATAGGTGTTTATTTGGAAGATATAGCAGTGGCTTCACTAGCTGCCAAATGGAAGGGTAAATCATCTGAAGAGTTACTTGAGACCCTCGACTTTTACAGAGACATCATCTCAGGTCCCTTTGAAAAGTTAATTAGAGGGTCAAAGATTAGGGAATTGAGTGGTCCTGAGTACTCAAGGAAGGTTATGGAGAACTGTGTGGCACACTTGAAATCAGTTGGAACTTATGGAGATGCAGAAGCTGAAGCTATGCAAAAATTTGCTGAAGCTTTCAAGCCTGTTAATTTTCCACCTGGTGCCTCTGTTTTCTACAGGCAATCACCTGATGGAATATTAGGGCTTAGTTTCTCTCCGGATACAAGTATACCAGAAAAGGAGGCTGCACTCATAGAGAACAAGGCAGTTTCATCAGCAGTGTTGGAGACTATGATCGGCGAACACGCTGTTTCCCCTGATCTTAAGCGCTGTTTGGCTGCAAGATTACCTGCGTTGTTGAACGAGGGTGCTTTCAAGATTGGAAACTGA

Protein sequence

>Msa0046170

MAASITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNEGAFKIGN*