AlfalfaGEDB | Msa1436490

M. sativa cultivar zhongmu-4 / Msa1436490

KEGG: K01859
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576
PFAM: PF02431.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436490	P28012.1	100.000	222	0	0	1	222	1	222	4.82e-159	449

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436490	sp\|P28012\|CFI1_MEDSA	100.000	222	0	0	1	222	1	222	6.02e-162	449

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436490	U5TRY3	100.000	222	0	0	1	222	1	222	2.30e-159	449

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0046170	Msa1436490	0.981520	8.647888e-153	-8.615850e-47
Msa0139530	Msa1436490	0.981667	3.759803e-153	-8.615850e-47
Msa0242720	Msa1436490	0.813171	2.930267e-51	-8.615850e-47
Msa0320170	Msa1436490	0.821287	4.374552e-53	-8.615850e-47
Msa0557240	Msa1436490	0.806470	8.100680e-50	-8.615850e-47
Msa0615200	Msa1436490	0.815751	7.871756e-52	-8.615850e-47
Msa0615210	Msa1436490	0.800649	1.305089e-48	-8.615850e-47
Msa0652590	Msa1436490	0.833339	5.645558e-56	-8.615850e-47
Msa0652600	Msa1436490	0.801574	8.445935e-49	-8.615850e-47
Msa0669350	Msa1436490	0.803361	3.616877e-49	-8.615850e-47

Showing 1 to 10 of 28 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436490	MtrunA17_Chr1g0213011	98.198	222	4	0	1	222	1	222	1.01e-161	445
Msa1436490	MtrunA17_Chr1g0213021	62.896	221	82	0	2	222	5	225	7.70e-98	284
Msa1436490	MtrunA17_Chr1g0213031	61.187	219	85	0	2	220	5	223	8.08e-93	271
Msa1436490	MtrunA17_Chr1g0213041	54.884	215	95	1	4	216	5	219	1.75e-80	240
Msa1436490	MtrunA17_Chr1g0213051	52.804	214	99	1	4	215	5	218	7.94e-78	233
Msa1436490	MtrunA17_Chr7g0224381	50.000	162	81	0	4	165	5	166	4.81e-56	176
Msa1436490	MtrunA17_Chr3g0128761	32.086	187	116	5	29	209	15	196	1.83e-11	61.2

Showing 1 to 7 of 7 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436490	AT3G55120.1	49.048	210	107	0	4	213	15	224	3.16e-67	207
Msa1436490	AT5G66230.2	42.453	212	114	1	4	215	5	208	1.27e-53	180
Msa1436490	AT5G66220.1	42.767	159	91	0	57	215	1	159	5.51e-44	145
Msa1436490	AT5G05270.1	28.708	209	142	4	8	214	6	209	6.90e-13	65.5
Msa1436490	AT5G05270.2	28.708	209	142	4	8	214	6	209	6.90e-13	65.5

Showing 1 to 5 of 5 entries

Previous1Next

Find 80 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCAAAATAGGTGAAT+TGG	0.349824	tig0027943:+43392	Msa1436490:five_prime_UTR
AAATATGATTTGCCGGTGAC+CGG	0.472992	tig0027943:-43620	None:intergenic
AAATATTAAGAACAAGAATA+TGG	0.384629	tig0027943:+43538	Msa1436490:exon
AACGAGGGTGCTTTCAAGAT+TGG	0.337469	tig0027943:+44812	Msa1436490:CDS
AAGGTTCTCCACAGTGATTG+CGG	0.648293	tig0027943:-43573	None:intergenic
AATAGGAAGCGGTCTGGCCC+AGG	0.492465	tig0027943:-43454	None:intergenic
AATCACCTGATGGAATATTA+GGG	0.365814	tig0027943:+44506	Msa1436490:CDS
AATTAGAGGGTCAAAGATTA+GGG	0.310626	tig0027943:+44321	Msa1436490:CDS
ACCGAGGAAATATGATTTGC+CGG	0.416952	tig0027943:-43627	None:intergenic
ACCGGAGAGGTAACCACCGC+TGG	0.477165	tig0027943:-43602	None:intergenic

Showing 1 to 10 of 80 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCTTCCAAATAAACACCTA+TGG	-	tig0027943:43705-43724	None:intergenic	30.0%
TTATTTGGAAGATATAGCAG+TGG	+	tig0027943:43712-43731	Msa1436490:CDS	30.0%
TAATTAGAGGGTCAAAGATT+AGG	+	tig0027943:44320-44339	Msa1436490:CDS	30.0%
AATTAGAGGGTCAAAGATTA+GGG	+	tig0027943:44321-44340	Msa1436490:CDS	30.0%
TTGAAATCAGTTGGAACTTA+TGG	+	tig0027943:44397-44416	Msa1436490:CDS	30.0%
AATCACCTGATGGAATATTA+GGG	+	tig0027943:44506-44525	Msa1436490:CDS	30.0%
TGTAGACTTAAAAAAGTCCA+TGG	-	tig0027943:44903-44922	None:intergenic	30.0%
ATCTTCCAAATAAACACCTA+TGG	-	tig0027943:43705-43724	None:intergenic	30.0%
TTATTTGGAAGATATAGCAG+TGG	+	tig0027943:43712-43731	Msa1436490:CDS	30.0%
TAATTAGAGGGTCAAAGATT+AGG	+	tig0027943:44320-44339	Msa1436490:CDS	30.0%

Showing 1 to 10 of 221 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
tig0027943	gene	43376	45125	43376	ID=Msa1436490;Name=Msa1436490
tig0027943	mRNA	43376	45125	43376	ID=Msa1436490-mRNA-1;Parent=Msa1436490;Name=Msa1436490-mRNA-1;_AED=0.37;_eAED=0.37;_QI=181\|1\|1\|1\|1\|1\|3\|284\|222
tig0027943	exon	43376	43815	43376	ID=Msa1436490-mRNA-1:exon:10242;Parent=Msa1436490-mRNA-1
tig0027943	exon	44305	44528	44305	ID=Msa1436490-mRNA-1:exon:10243;Parent=Msa1436490-mRNA-1
tig0027943	exon	44656	45125	44656	ID=Msa1436490-mRNA-1:exon:10244;Parent=Msa1436490-mRNA-1
tig0027943	five_prime_UTR	43376	43556	43376	ID=Msa1436490-mRNA-1:five_prime_utr;Parent=Msa1436490-mRNA-1
tig0027943	CDS	43557	43815	43557	ID=Msa1436490-mRNA-1:cds;Parent=Msa1436490-mRNA-1
tig0027943	CDS	44305	44528	44305	ID=Msa1436490-mRNA-1:cds;Parent=Msa1436490-mRNA-1
tig0027943	CDS	44656	44841	44656	ID=Msa1436490-mRNA-1:cds;Parent=Msa1436490-mRNA-1
tig0027943	three_prime_UTR	44842	45125	44842	ID=Msa1436490-mRNA-1:three_prime_utr;Parent=Msa1436490-mRNA-1

Gene Sequence

>Msa1436490

ATGGCTGCATCAATCACCGCAATCACTGTGGAGAACCTTGAATACCCAGCGGTGGTTACCTCTCCGGTCACCGGCAAATCATATTTCCTCGGTGGCGCTGGGGAGAGAGGATTGACCATTGAAGGAAACTTCATCAAGTTCACTGCCATAGGTGTTTATTTGGAAGATATAGCAGTGGCTTCACTAGCTGCCAAATGGAAGGGTAAATCATCTGAAGAGTTACTTGAGACCCTCGACTTTTACAGAGACATCATCTCAGGTCCCTTTGAAAAGTTAATTAGAGGGTCAAAGATTAGGGAATTGAGTGGTCCTGAGTACTCAAGGAAGGTTATGGAGAACTGTGTGGCACACTTGAAATCAGTTGGAACTTATGGAGATGCAGAAGCTGAAGCTATGCAAAAATTTGCTGAAGCTTTCAAGCCTGTTAATTTTCCACCTGGTGCCTCTGTTTTCTACAGGCAATCACCTGATGGAATATTAGGGCTTAGTTTCTCTCCGGATACAAGTATACCAGAAAAGGAGGCTGCACTCATAGAGAACAAGGCAGTTTCATCAGCAGTGTTGGAGACTATGATCGGCGAACACGCTGTTTCCCCTGATCTTAAGCGCTGTTTGGCTGCAAGATTACCTGCGTTGTTGAACGAGGGTGCTTTCAAGATTGGAAACTGA

Protein sequence

>Msa1436490

MAASITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNEGAFKIGN*