AlfalfaGEDB | Msa1436490

M. sativa cultivar zhongmu-4 / Msa1436490

KEGG: K01859
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576
PFAM: PF02431.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436490	P28012.1	100.000	222	0	0	1	222	1	222	4.82e-159	449

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436490	sp\|P28012\|CFI1_MEDSA	100.000	222	0	0	1	222	1	222	6.02e-162	449

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436490	U5TRY3	100.000	222	0	0	1	222	1	222	2.30e-159	449

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0046170	Msa1436490	0.981520	8.647888e-153	-8.615850e-47
Msa1405530	Msa1436490	0.806029	1.003056e-49	-8.615850e-47
Msa1409690	Msa1436490	0.985541	6.870933e-164	-8.615850e-47
Msa1436490	Msa1459920	0.806618	7.537610e-50	-8.615850e-47
Msa0615200	Msa1436490	0.815751	7.871756e-52	-8.615850e-47
Msa0615210	Msa1436490	0.800649	1.305089e-48	-8.615850e-47
Msa0652590	Msa1436490	0.833339	5.645558e-56	-8.615850e-47
Msa0652600	Msa1436490	0.801574	8.445935e-49	-8.615850e-47
Msa0669350	Msa1436490	0.803361	3.616877e-49	-8.615850e-47
Msa0744710	Msa1436490	0.825936	3.571069e-54	-8.615850e-47
Msa0826240	Msa1436490	0.824359	8.423700e-54	-8.615850e-47
Msa0139530	Msa1436490	0.981667	3.759803e-153	-8.615850e-47
Msa1027340	Msa1436490	0.844200	8.758883e-59	-8.615850e-47
Msa1027400	Msa1436490	0.847943	8.396736e-60	-8.615850e-47
Msa1034450	Msa1436490	0.807581	4.714617e-50	-8.615850e-47
Msa1074200	Msa1436490	0.804420	2.179091e-49	-8.615850e-47
Msa1077970	Msa1436490	0.831063	2.064331e-55	-8.615850e-47
Msa0242720	Msa1436490	0.813171	2.930267e-51	-8.615850e-47
Msa0320170	Msa1436490	0.821287	4.374552e-53	-8.615850e-47
Msa1110900	Msa1436490	0.811432	7.020544e-51	-8.615850e-47
Msa1114670	Msa1436490	0.828637	8.047572e-55	-8.615850e-47
Msa1120580	Msa1436490	0.805540	1.270961e-49	-8.615850e-47
Msa1133700	Msa1436490	0.805716	1.167308e-49	-8.615850e-47
Msa1154570	Msa1436490	0.844020	9.792351e-59	-8.615850e-47
Msa1157110	Msa1436490	0.822093	2.848286e-53	-8.615850e-47
Msa1159170	Msa1436490	0.816980	4.180983e-52	-8.615850e-47
Msa0557240	Msa1436490	0.806470	8.100680e-50	-8.615850e-47
Msa0967750	Msa1436490	0.977262	1.978810e-143	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436490	MtrunA17_Chr1g0213011	98.198	222	4	0	1	222	1	222	1.01e-161	445
Msa1436490	MtrunA17_Chr1g0213021	62.896	221	82	0	2	222	5	225	7.70e-98	284
Msa1436490	MtrunA17_Chr1g0213031	61.187	219	85	0	2	220	5	223	8.08e-93	271
Msa1436490	MtrunA17_Chr1g0213041	54.884	215	95	1	4	216	5	219	1.75e-80	240
Msa1436490	MtrunA17_Chr1g0213051	52.804	214	99	1	4	215	5	218	7.94e-78	233
Msa1436490	MtrunA17_Chr7g0224381	50.000	162	81	0	4	165	5	166	4.81e-56	176
Msa1436490	MtrunA17_Chr3g0128761	32.086	187	116	5	29	209	15	196	1.83e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1436490	AT3G55120.1	49.048	210	107	0	4	213	15	224	3.16e-67	207
Msa1436490	AT5G66230.2	42.453	212	114	1	4	215	5	208	1.27e-53	180
Msa1436490	AT5G66220.1	42.767	159	91	0	57	215	1	159	5.51e-44	145
Msa1436490	AT5G05270.1	28.708	209	142	4	8	214	6	209	6.90e-13	65.5
Msa1436490	AT5G05270.2	28.708	209	142	4	8	214	6	209	6.90e-13	65.5

Find 80 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGACCAATTCACCTATTT+TGG	0.093565	tig0027943:-43397	None:intergenic
AGCTATGATGTTTCAGATTT+TGG	0.159725	tig0027943:-43509	None:intergenic
CAATCACCTGATGGAATATT+AGG	0.209322	tig0027943:+44505	Msa1436490:CDS
CACTGCCATAGGTGTTTATT+TGG	0.211608	tig0027943:+43697	Msa1436490:CDS
TTGAAATCAGTTGGAACTTA+TGG	0.230001	tig0027943:+44397	Msa1436490:CDS
TTCTTGTGCTGCAACGCTTT+TGG	0.248420	tig0027943:-44872	None:intergenic
AATTAGAGGGTCAAAGATTA+GGG	0.310626	tig0027943:+44321	Msa1436490:CDS
CTTGATGAAGTTTCCTTCAA+TGG	0.330932	tig0027943:-43672	None:intergenic
CCCTGATCTTAAGCGCTGTT+TGG	0.332738	tig0027943:+44766	Msa1436490:CDS
AACGAGGGTGCTTTCAAGAT+TGG	0.337469	tig0027943:+44812	Msa1436490:CDS
TAATTAGAGGGTCAAAGATT+AGG	0.343487	tig0027943:+44320	Msa1436490:CDS
AAAATCCAAAATAGGTGAAT+TGG	0.349824	tig0027943:+43392	Msa1436490:five_prime_UTR
TCATATTTCCTCGGTGGCGC+TGG	0.355424	tig0027943:+43635	Msa1436490:CDS
CCCTTTGAAAAGTTAATTAG+AGG	0.361486	tig0027943:+44307	Msa1436490:CDS
AATCACCTGATGGAATATTA+GGG	0.365814	tig0027943:+44506	Msa1436490:CDS
AAATATTAAGAACAAGAATA+TGG	0.384629	tig0027943:+43538	Msa1436490:exon
TCAAATAAAATACATGCAAC+TGG	0.398245	tig0027943:+43415	Msa1436490:five_prime_UTR
GCCAAACAGCGCTTAAGATC+AGG	0.410390	tig0027943:-44767	None:intergenic
GCACCAGGTGGAAAATTAAC+AGG	0.410631	tig0027943:-44466	None:intergenic
ACCGAGGAAATATGATTTGC+CGG	0.416952	tig0027943:-43627	None:intergenic
AGATGATTTACCCTTCCATT+TGG	0.439741	tig0027943:-43747	None:intergenic
ACTTGCGTTAAGTGAAGAAC+GGG	0.443654	tig0027943:-43481	None:intergenic
GGCAGTTTCATCAGCAGTGT+TGG	0.459798	tig0027943:+44715	Msa1436490:CDS
CTCGGTGGCGCTGGGGAGAG+AGG	0.461142	tig0027943:+43644	Msa1436490:CDS
CATATTTCCTCGGTGGCGCT+GGG	0.461249	tig0027943:+43636	Msa1436490:CDS
GGAACGAAATAAACGCCGCC+TGG	0.467910	tig0027943:+43436	Msa1436490:five_prime_UTR
AAATATGATTTGCCGGTGAC+CGG	0.472992	tig0027943:-43620	None:intergenic
ACCGGAGAGGTAACCACCGC+TGG	0.477165	tig0027943:-43602	None:intergenic
TGAGTACTCAAGGAAGGTTA+TGG	0.487878	tig0027943:+44357	Msa1436490:CDS
TAACCACCGCTGGGTATTCA+AGG	0.488480	tig0027943:-43592	None:intergenic
GGATACAAGTATACCAGAAA+AGG	0.490457	tig0027943:+44670	Msa1436490:CDS
AATAGGAAGCGGTCTGGCCC+AGG	0.492465	tig0027943:-43454	None:intergenic
CCCAGCGGTGGTTACCTCTC+CGG	0.492838	tig0027943:+43601	Msa1436490:CDS
TATTATTGATACTAATAAGA+AGG	0.499753	tig0027943:-44949	None:intergenic
TGGCTTCACTAGCTGCCAAA+TGG	0.503292	tig0027943:+43732	Msa1436490:CDS
GTTACAGCTTAGTTTCTCTC+CGG	0.504378	tig0027943:+44649	Msa1436490:intron
GAGAGAGGATTGACCATTGA+AGG	0.509487	tig0027943:+43659	Msa1436490:CDS
CTAACCCCTAATATTCCATC+AGG	0.511312	tig0027943:-44511	None:intergenic
ATCTTCCAAATAAACACCTA+TGG	0.512141	tig0027943:-43702	None:intergenic
GTGGTTACCTCTCCGGTCAC+CGG	0.524005	tig0027943:+43608	Msa1436490:CDS
TTCACTAGCTGCCAAATGGA+AGG	0.526249	tig0027943:+43736	Msa1436490:CDS
CCAAACAGCGCTTAAGATCA+GGG	0.532079	tig0027943:-44766	None:intergenic
TTCTACAGGCAATCACCTGA+TGG	0.554083	tig0027943:+44496	Msa1436490:CDS
GAACGAAATAAACGCCGCCT+GGG	0.554703	tig0027943:+43437	Msa1436490:five_prime_UTR
GACTTGCGTTAAGTGAAGAA+CGG	0.560970	tig0027943:-43482	None:intergenic
GGCTGCACTCATAGAGAACA+AGG	0.569164	tig0027943:+44694	Msa1436490:CDS
ACCGGCAAATCATATTTCCT+CGG	0.576452	tig0027943:+43626	Msa1436490:CDS
TGAGTGGTCCTGAGTACTCA+AGG	0.577740	tig0027943:+44347	Msa1436490:CDS
CTCTCTCCCCAGCGCCACCG+AGG	0.582911	tig0027943:-43643	None:intergenic
CTGTAGAAAACAGAGGCACC+AGG	0.591901	tig0027943:-44481	None:intergenic
CCTTTGAAAAGTTAATTAGA+GGG	0.595496	tig0027943:+44308	Msa1436490:CDS
ATTACCTGCGTTGTTGAACG+AGG	0.600190	tig0027943:+44796	Msa1436490:CDS
TGATGTCTCTGTAAAAGTCG+AGG	0.602205	tig0027943:-43787	None:intergenic
ATAACCTTCCTTGAGTACTC+AGG	0.607676	tig0027943:-44355	None:intergenic
TTCATCAAGTTCACTGCCAT+AGG	0.610295	tig0027943:+43686	Msa1436490:CDS
GCAGTGTTGGAGACTATGAT+CGG	0.622152	tig0027943:+44728	Msa1436490:CDS
AGGAAGCGGTCTGGCCCAGG+CGG	0.623344	tig0027943:-43451	None:intergenic
TCACTAGCTGCCAAATGGAA+GGG	0.624312	tig0027943:+43737	Msa1436490:CDS
GTGGCACACTTGAAATCAGT+TGG	0.625898	tig0027943:+44388	Msa1436490:CDS
GATGTCTCTGTAAAAGTCGA+GGG	0.629213	tig0027943:-43786	None:intergenic
CCGGAGAGGTAACCACCGCT+GGG	0.632340	tig0027943:-43601	None:intergenic
TACAAGTATACCAGAAAAGG+AGG	0.632960	tig0027943:+44673	Msa1436490:CDS
TGGTCCTGAGTACTCAAGGA+AGG	0.639707	tig0027943:+44351	Msa1436490:CDS
GGCAAATCATATTTCCTCGG+TGG	0.648065	tig0027943:+43629	Msa1436490:CDS
AAGGTTCTCCACAGTGATTG+CGG	0.648293	tig0027943:-43573	None:intergenic
ATATTTCCTCGGTGGCGCTG+GGG	0.654176	tig0027943:+43637	Msa1436490:CDS
GCACCCTCGTTCAACAACGC+AGG	0.670342	tig0027943:-44800	None:intergenic
TGATTTGCCGGTGACCGGAG+AGG	0.671162	tig0027943:-43615	None:intergenic
TTATTTGGAAGATATAGCAG+TGG	0.671898	tig0027943:+43712	Msa1436490:CDS
GAACCTTGAATACCCAGCGG+TGG	0.677026	tig0027943:+43589	Msa1436490:CDS
CAAACAGCGCTTAAGATCAG+GGG	0.682290	tig0027943:-44765	None:intergenic
TTACCTGCGTTGTTGAACGA+GGG	0.686961	tig0027943:+44797	Msa1436490:CDS
ATCACCTGATGGAATATTAG+GGG	0.689762	tig0027943:+44507	Msa1436490:CDS
TCAAAGATTAGGGAATTGAG+TGG	0.698363	tig0027943:+44331	Msa1436490:CDS
TAGAAAACAGAGGCACCAGG+TGG	0.700225	tig0027943:-44478	None:intergenic
GCAGCACAAGAATGAGACCA+TGG	0.722638	tig0027943:+44883	Msa1436490:three_prime_UTR
ATCAATCACCGCAATCACTG+TGG	0.724881	tig0027943:+43565	Msa1436490:CDS
GAAGGTTATGGAGAACTGTG+TGG	0.734369	tig0027943:+44369	Msa1436490:CDS
TGATTGCCTGTAGAAAACAG+AGG	0.767471	tig0027943:-44488	None:intergenic
GGAGAACCTTGAATACCCAG+CGG	0.782943	tig0027943:+43586	Msa1436490:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATATTAAGAACAAGAATA+TGG	+	tig0027943:43538-43557	Msa1436490:exon	15.0%
!!	AAATCATTTAATTAATTGCA+AGG	-	tig0027943:43853-43872	None:intergenic	15.0%
!!	GTAATACTATAGTATTTAAT+TGG	-	tig0027943:44167-44186	None:intergenic	15.0%
!!!	TGATAAATTGATAATTTTGT+AGG	+	tig0027943:44283-44302	Msa1436490:intron	15.0%
!!!	TTTTAATATACTAGTATTAG+TGG	-	tig0027943:44623-44642	None:intergenic	15.0%
!!	TATTATTGATACTAATAAGA+AGG	-	tig0027943:44952-44971	None:intergenic	15.0%
!!	AAATATTAAGAACAAGAATA+TGG	+	tig0027943:43538-43557	Msa1436490:exon	15.0%
!!	AAATCATTTAATTAATTGCA+AGG	-	tig0027943:43853-43872	None:intergenic	15.0%
!!	GTAATACTATAGTATTTAAT+TGG	-	tig0027943:44167-44186	None:intergenic	15.0%
!!!	TGATAAATTGATAATTTTGT+AGG	+	tig0027943:44283-44302	Msa1436490:intron	15.0%
!!!	TTTTAATATACTAGTATTAG+TGG	-	tig0027943:44623-44642	None:intergenic	15.0%
!!	TATTATTGATACTAATAAGA+AGG	-	tig0027943:44952-44971	None:intergenic	15.0%
!!	AGAAAAGAAAAATCCAAAAT+AGG	+	tig0027943:43384-43403	Msa1436490:five_prime_UTR	20.0%
!!	GTTAGACTTTAATTAATTCT+TGG	-	tig0027943:44076-44095	None:intergenic	20.0%
!!	AATTAAAGTCTAACATACAA+CGG	+	tig0027943:44082-44101	Msa1436490:intron	20.0%
!!	AGTTAAGAAACAGAATTAAT+TGG	-	tig0027943:44545-44564	None:intergenic	20.0%
!!!	TTTCTTAACTATTTTAGTTG+AGG	+	tig0027943:44555-44574	Msa1436490:intron	20.0%
!!	AGAAAAGAAAAATCCAAAAT+AGG	+	tig0027943:43384-43403	Msa1436490:five_prime_UTR	20.0%
!!	GTTAGACTTTAATTAATTCT+TGG	-	tig0027943:44076-44095	None:intergenic	20.0%
!!	AATTAAAGTCTAACATACAA+CGG	+	tig0027943:44082-44101	Msa1436490:intron	20.0%
!!	AGTTAAGAAACAGAATTAAT+TGG	-	tig0027943:44545-44564	None:intergenic	20.0%
!!!	TTTCTTAACTATTTTAGTTG+AGG	+	tig0027943:44555-44574	Msa1436490:intron	20.0%
!	AAAATCCAAAATAGGTGAAT+TGG	+	tig0027943:43392-43411	Msa1436490:five_prime_UTR	25.0%
!	TCAAATAAAATACATGCAAC+TGG	+	tig0027943:43415-43434	Msa1436490:five_prime_UTR	25.0%
!!!	CATTTTTTAACATATGAAGC+TGG	+	tig0027943:43908-43927	Msa1436490:intron	25.0%
!	AATGTGAGTAAAAACTATGA+AGG	-	tig0027943:43977-43996	None:intergenic	25.0%
!	ATCAATAAGACTCATATGAT+TGG	-	tig0027943:44043-44062	None:intergenic	25.0%
!	TTTAATTGGATGAATTCAAG+TGG	-	tig0027943:44153-44172	None:intergenic	25.0%
!!	CCTCTAATTAACTTTTCAAA+GGG	-	tig0027943:44310-44329	None:intergenic	25.0%
!!	CCTTTGAAAAGTTAATTAGA+GGG	+	tig0027943:44308-44327	Msa1436490:CDS	25.0%
!	ATATACTAGTATTAGTGGAA+AGG	-	tig0027943:44618-44637	None:intergenic	25.0%
!	AAAATCCAAAATAGGTGAAT+TGG	+	tig0027943:43392-43411	Msa1436490:five_prime_UTR	25.0%
!	TCAAATAAAATACATGCAAC+TGG	+	tig0027943:43415-43434	Msa1436490:five_prime_UTR	25.0%
!!!	CATTTTTTAACATATGAAGC+TGG	+	tig0027943:43908-43927	Msa1436490:intron	25.0%
!	AATGTGAGTAAAAACTATGA+AGG	-	tig0027943:43977-43996	None:intergenic	25.0%
!	ATCAATAAGACTCATATGAT+TGG	-	tig0027943:44043-44062	None:intergenic	25.0%
!	TTTAATTGGATGAATTCAAG+TGG	-	tig0027943:44153-44172	None:intergenic	25.0%
!!	CCTCTAATTAACTTTTCAAA+GGG	-	tig0027943:44310-44329	None:intergenic	25.0%
!!	CCTTTGAAAAGTTAATTAGA+GGG	+	tig0027943:44308-44327	Msa1436490:CDS	25.0%
!	ATATACTAGTATTAGTGGAA+AGG	-	tig0027943:44618-44637	None:intergenic	25.0%
!	TTTGACCAATTCACCTATTT+TGG	-	tig0027943:43400-43419	None:intergenic	30.0%
!	AGCTATGATGTTTCAGATTT+TGG	-	tig0027943:43512-43531	None:intergenic	30.0%
	ATCTTCCAAATAAACACCTA+TGG	-	tig0027943:43705-43724	None:intergenic	30.0%
	TTATTTGGAAGATATAGCAG+TGG	+	tig0027943:43712-43731	Msa1436490:CDS	30.0%
!	ACTCATATGATTGGTTGATT+AGG	-	tig0027943:44034-44053	None:intergenic	30.0%
!	CCCTTTGAAAAGTTAATTAG+AGG	+	tig0027943:44307-44326	Msa1436490:CDS	30.0%
!	CCCTCTAATTAACTTTTCAA+AGG	-	tig0027943:44311-44330	None:intergenic	30.0%
	TAATTAGAGGGTCAAAGATT+AGG	+	tig0027943:44320-44339	Msa1436490:CDS	30.0%
	AATTAGAGGGTCAAAGATTA+GGG	+	tig0027943:44321-44340	Msa1436490:CDS	30.0%
	TTGAAATCAGTTGGAACTTA+TGG	+	tig0027943:44397-44416	Msa1436490:CDS	30.0%
	AATCACCTGATGGAATATTA+GGG	+	tig0027943:44506-44525	Msa1436490:CDS	30.0%
!!	TTTTCTGGTATACTTGTATC+CGG	-	tig0027943:44671-44690	None:intergenic	30.0%
	TGTAGACTTAAAAAAGTCCA+TGG	-	tig0027943:44903-44922	None:intergenic	30.0%
!	TTTGACCAATTCACCTATTT+TGG	-	tig0027943:43400-43419	None:intergenic	30.0%
!	AGCTATGATGTTTCAGATTT+TGG	-	tig0027943:43512-43531	None:intergenic	30.0%
	ATCTTCCAAATAAACACCTA+TGG	-	tig0027943:43705-43724	None:intergenic	30.0%
	TTATTTGGAAGATATAGCAG+TGG	+	tig0027943:43712-43731	Msa1436490:CDS	30.0%
!	ACTCATATGATTGGTTGATT+AGG	-	tig0027943:44034-44053	None:intergenic	30.0%
!	CCCTTTGAAAAGTTAATTAG+AGG	+	tig0027943:44307-44326	Msa1436490:CDS	30.0%
!	CCCTCTAATTAACTTTTCAA+AGG	-	tig0027943:44311-44330	None:intergenic	30.0%
	TAATTAGAGGGTCAAAGATT+AGG	+	tig0027943:44320-44339	Msa1436490:CDS	30.0%
	AATTAGAGGGTCAAAGATTA+GGG	+	tig0027943:44321-44340	Msa1436490:CDS	30.0%
	TTGAAATCAGTTGGAACTTA+TGG	+	tig0027943:44397-44416	Msa1436490:CDS	30.0%
	AATCACCTGATGGAATATTA+GGG	+	tig0027943:44506-44525	Msa1436490:CDS	30.0%
!!	TTTTCTGGTATACTTGTATC+CGG	-	tig0027943:44671-44690	None:intergenic	30.0%
	TGTAGACTTAAAAAAGTCCA+TGG	-	tig0027943:44903-44922	None:intergenic	30.0%
!!	AGTGAAGAACGGGTTTTAAT+AGG	-	tig0027943:43474-43493	None:intergenic	35.0%
	CTTGATGAAGTTTCCTTCAA+TGG	-	tig0027943:43675-43694	None:intergenic	35.0%
	AGATGATTTACCCTTCCATT+TGG	-	tig0027943:43750-43769	None:intergenic	35.0%
!	TTTTACAGAGACATCATCTC+AGG	+	tig0027943:43794-43813	Msa1436490:CDS	35.0%
	TCAAAGATTAGGGAATTGAG+TGG	+	tig0027943:44331-44350	Msa1436490:CDS	35.0%
	CAATCACCTGATGGAATATT+AGG	+	tig0027943:44505-44524	Msa1436490:CDS	35.0%
	ATCACCTGATGGAATATTAG+GGG	+	tig0027943:44507-44526	Msa1436490:CDS	35.0%
	GGATACAAGTATACCAGAAA+AGG	+	tig0027943:44670-44689	Msa1436490:CDS	35.0%
	TACAAGTATACCAGAAAAGG+AGG	+	tig0027943:44673-44692	Msa1436490:CDS	35.0%
!!	AGTGAAGAACGGGTTTTAAT+AGG	-	tig0027943:43474-43493	None:intergenic	35.0%
	CTTGATGAAGTTTCCTTCAA+TGG	-	tig0027943:43675-43694	None:intergenic	35.0%
	AGATGATTTACCCTTCCATT+TGG	-	tig0027943:43750-43769	None:intergenic	35.0%
!	TTTTACAGAGACATCATCTC+AGG	+	tig0027943:43794-43813	Msa1436490:CDS	35.0%
	TCAAAGATTAGGGAATTGAG+TGG	+	tig0027943:44331-44350	Msa1436490:CDS	35.0%
	CAATCACCTGATGGAATATT+AGG	+	tig0027943:44505-44524	Msa1436490:CDS	35.0%
	ATCACCTGATGGAATATTAG+GGG	+	tig0027943:44507-44526	Msa1436490:CDS	35.0%
	GGATACAAGTATACCAGAAA+AGG	+	tig0027943:44670-44689	Msa1436490:CDS	35.0%
	TACAAGTATACCAGAAAAGG+AGG	+	tig0027943:44673-44692	Msa1436490:CDS	35.0%
!!	GAACGGGTTTTAATAGGAAG+CGG	-	tig0027943:43468-43487	None:intergenic	40.0%
	ACTTGCGTTAAGTGAAGAAC+GGG	-	tig0027943:43484-43503	None:intergenic	40.0%
	GACTTGCGTTAAGTGAAGAA+CGG	-	tig0027943:43485-43504	None:intergenic	40.0%
!	AAATATGATTTGCCGGTGAC+CGG	-	tig0027943:43623-43642	None:intergenic	40.0%
	ACCGGCAAATCATATTTCCT+CGG	+	tig0027943:43626-43645	Msa1436490:CDS	40.0%
!	ACCGAGGAAATATGATTTGC+CGG	-	tig0027943:43630-43649	None:intergenic	40.0%
	TTCATCAAGTTCACTGCCAT+AGG	+	tig0027943:43686-43705	Msa1436490:CDS	40.0%
	CACTGCCATAGGTGTTTATT+TGG	+	tig0027943:43697-43716	Msa1436490:CDS	40.0%
	GATGTCTCTGTAAAAGTCGA+GGG	-	tig0027943:43789-43808	None:intergenic	40.0%
	TGATGTCTCTGTAAAAGTCG+AGG	-	tig0027943:43790-43809	None:intergenic	40.0%
	ATAACCTTCCTTGAGTACTC+AGG	-	tig0027943:44358-44377	None:intergenic	40.0%
	TGAGTACTCAAGGAAGGTTA+TGG	+	tig0027943:44357-44376	Msa1436490:CDS	40.0%
!	AAGCCTGTTAATTTTCCACC+TGG	+	tig0027943:44463-44482	Msa1436490:CDS	40.0%
	TGATTGCCTGTAGAAAACAG+AGG	-	tig0027943:44491-44510	None:intergenic	40.0%
	CTAACCCCTAATATTCCATC+AGG	-	tig0027943:44514-44533	None:intergenic	40.0%
	GTTACAGCTTAGTTTCTCTC+CGG	+	tig0027943:44649-44668	Msa1436490:intron	40.0%
	TGAGTAGAGTTGCTTAACTG+AGG	+	tig0027943:45105-45124	Msa1436490:three_prime_UTR	40.0%
!!	GAACGGGTTTTAATAGGAAG+CGG	-	tig0027943:43468-43487	None:intergenic	40.0%
	ACTTGCGTTAAGTGAAGAAC+GGG	-	tig0027943:43484-43503	None:intergenic	40.0%
	GACTTGCGTTAAGTGAAGAA+CGG	-	tig0027943:43485-43504	None:intergenic	40.0%
!	AAATATGATTTGCCGGTGAC+CGG	-	tig0027943:43623-43642	None:intergenic	40.0%
	ACCGGCAAATCATATTTCCT+CGG	+	tig0027943:43626-43645	Msa1436490:CDS	40.0%
!	ACCGAGGAAATATGATTTGC+CGG	-	tig0027943:43630-43649	None:intergenic	40.0%
	TTCATCAAGTTCACTGCCAT+AGG	+	tig0027943:43686-43705	Msa1436490:CDS	40.0%
	CACTGCCATAGGTGTTTATT+TGG	+	tig0027943:43697-43716	Msa1436490:CDS	40.0%
	GATGTCTCTGTAAAAGTCGA+GGG	-	tig0027943:43789-43808	None:intergenic	40.0%
	TGATGTCTCTGTAAAAGTCG+AGG	-	tig0027943:43790-43809	None:intergenic	40.0%
	ATAACCTTCCTTGAGTACTC+AGG	-	tig0027943:44358-44377	None:intergenic	40.0%
	TGAGTACTCAAGGAAGGTTA+TGG	+	tig0027943:44357-44376	Msa1436490:CDS	40.0%
!	AAGCCTGTTAATTTTCCACC+TGG	+	tig0027943:44463-44482	Msa1436490:CDS	40.0%
	TGATTGCCTGTAGAAAACAG+AGG	-	tig0027943:44491-44510	None:intergenic	40.0%
	CTAACCCCTAATATTCCATC+AGG	-	tig0027943:44514-44533	None:intergenic	40.0%
	GTTACAGCTTAGTTTCTCTC+CGG	+	tig0027943:44649-44668	Msa1436490:intron	40.0%
!!	GGTTTTAATAGGAAGCGGTC+TGG	-	tig0027943:43463-43482	None:intergenic	45.0%
	ATCAATCACCGCAATCACTG+TGG	+	tig0027943:43565-43584	Msa1436490:CDS	45.0%
	AAGGTTCTCCACAGTGATTG+CGG	-	tig0027943:43576-43595	None:intergenic	45.0%
	GGCAAATCATATTTCCTCGG+TGG	+	tig0027943:43629-43648	Msa1436490:CDS	45.0%
	GAGAGAGGATTGACCATTGA+AGG	+	tig0027943:43659-43678	Msa1436490:CDS	45.0%
	TTCACTAGCTGCCAAATGGA+AGG	+	tig0027943:43736-43755	Msa1436490:CDS	45.0%
	TCACTAGCTGCCAAATGGAA+GGG	+	tig0027943:43737-43756	Msa1436490:CDS	45.0%
	GAAGGTTATGGAGAACTGTG+TGG	+	tig0027943:44369-44388	Msa1436490:CDS	45.0%
	GTGGCACACTTGAAATCAGT+TGG	+	tig0027943:44388-44407	Msa1436490:CDS	45.0%
	GCACCAGGTGGAAAATTAAC+AGG	-	tig0027943:44469-44488	None:intergenic	45.0%
	TTCTACAGGCAATCACCTGA+TGG	+	tig0027943:44496-44515	Msa1436490:CDS	45.0%
!	GCAGTGTTGGAGACTATGAT+CGG	+	tig0027943:44728-44747	Msa1436490:CDS	45.0%
	CAAACAGCGCTTAAGATCAG+GGG	-	tig0027943:44768-44787	None:intergenic	45.0%
	CCAAACAGCGCTTAAGATCA+GGG	-	tig0027943:44769-44788	None:intergenic	45.0%
	ATTACCTGCGTTGTTGAACG+AGG	+	tig0027943:44796-44815	Msa1436490:CDS	45.0%
	TTACCTGCGTTGTTGAACGA+GGG	+	tig0027943:44797-44816	Msa1436490:CDS	45.0%
!!	AACGAGGGTGCTTTCAAGAT+TGG	+	tig0027943:44812-44831	Msa1436490:CDS	45.0%
!	TTCTTGTGCTGCAACGCTTT+TGG	-	tig0027943:44875-44894	None:intergenic	45.0%
!!	GGTTTTAATAGGAAGCGGTC+TGG	-	tig0027943:43463-43482	None:intergenic	45.0%
	ATCAATCACCGCAATCACTG+TGG	+	tig0027943:43565-43584	Msa1436490:CDS	45.0%
	AAGGTTCTCCACAGTGATTG+CGG	-	tig0027943:43576-43595	None:intergenic	45.0%
	GGCAAATCATATTTCCTCGG+TGG	+	tig0027943:43629-43648	Msa1436490:CDS	45.0%
	GAGAGAGGATTGACCATTGA+AGG	+	tig0027943:43659-43678	Msa1436490:CDS	45.0%
	TTCACTAGCTGCCAAATGGA+AGG	+	tig0027943:43736-43755	Msa1436490:CDS	45.0%
	TCACTAGCTGCCAAATGGAA+GGG	+	tig0027943:43737-43756	Msa1436490:CDS	45.0%
	GAAGGTTATGGAGAACTGTG+TGG	+	tig0027943:44369-44388	Msa1436490:CDS	45.0%
	GTGGCACACTTGAAATCAGT+TGG	+	tig0027943:44388-44407	Msa1436490:CDS	45.0%
	GCACCAGGTGGAAAATTAAC+AGG	-	tig0027943:44469-44488	None:intergenic	45.0%
	TTCTACAGGCAATCACCTGA+TGG	+	tig0027943:44496-44515	Msa1436490:CDS	45.0%
!	GCAGTGTTGGAGACTATGAT+CGG	+	tig0027943:44728-44747	Msa1436490:CDS	45.0%
	CAAACAGCGCTTAAGATCAG+GGG	-	tig0027943:44768-44787	None:intergenic	45.0%
	CCAAACAGCGCTTAAGATCA+GGG	-	tig0027943:44769-44788	None:intergenic	45.0%
	ATTACCTGCGTTGTTGAACG+AGG	+	tig0027943:44796-44815	Msa1436490:CDS	45.0%
	TTACCTGCGTTGTTGAACGA+GGG	+	tig0027943:44797-44816	Msa1436490:CDS	45.0%
!!	AACGAGGGTGCTTTCAAGAT+TGG	+	tig0027943:44812-44831	Msa1436490:CDS	45.0%
!	TTCTTGTGCTGCAACGCTTT+TGG	-	tig0027943:44875-44894	None:intergenic	45.0%
	GAACGAAATAAACGCCGCCT+GGG	+	tig0027943:43437-43456	Msa1436490:five_prime_UTR	50.0%
	GGAGAACCTTGAATACCCAG+CGG	+	tig0027943:43586-43605	Msa1436490:CDS	50.0%
	TAACCACCGCTGGGTATTCA+AGG	-	tig0027943:43595-43614	None:intergenic	50.0%
	TGGCTTCACTAGCTGCCAAA+TGG	+	tig0027943:43732-43751	Msa1436490:CDS	50.0%
	GACAGACACTCCTCAATCCT+CGG	-	tig0027943:43955-43974	None:intergenic	50.0%
	TGAGTGGTCCTGAGTACTCA+AGG	+	tig0027943:44347-44366	Msa1436490:CDS	50.0%
	TGGTCCTGAGTACTCAAGGA+AGG	+	tig0027943:44351-44370	Msa1436490:CDS	50.0%
!!	TAGAAAACAGAGGCACCAGG+TGG	-	tig0027943:44481-44500	None:intergenic	50.0%
!!	CTGTAGAAAACAGAGGCACC+AGG	-	tig0027943:44484-44503	None:intergenic	50.0%
!	CTGGTGCCTCTGTTTTCTAC+AGG	+	tig0027943:44482-44501	Msa1436490:CDS	50.0%
!	ATGAGTGCAGCCTCCTTTTC+TGG	-	tig0027943:44686-44705	None:intergenic	50.0%
	GGCTGCACTCATAGAGAACA+AGG	+	tig0027943:44694-44713	Msa1436490:CDS	50.0%
	GGCAGTTTCATCAGCAGTGT+TGG	+	tig0027943:44715-44734	Msa1436490:CDS	50.0%
!	CCCTGATCTTAAGCGCTGTT+TGG	+	tig0027943:44766-44785	Msa1436490:CDS	50.0%
	GCCAAACAGCGCTTAAGATC+AGG	-	tig0027943:44770-44789	None:intergenic	50.0%
	GCAGCACAAGAATGAGACCA+TGG	+	tig0027943:44883-44902	Msa1436490:three_prime_UTR	50.0%
	GAACGAAATAAACGCCGCCT+GGG	+	tig0027943:43437-43456	Msa1436490:five_prime_UTR	50.0%
	GGAGAACCTTGAATACCCAG+CGG	+	tig0027943:43586-43605	Msa1436490:CDS	50.0%
	TAACCACCGCTGGGTATTCA+AGG	-	tig0027943:43595-43614	None:intergenic	50.0%
	TGGCTTCACTAGCTGCCAAA+TGG	+	tig0027943:43732-43751	Msa1436490:CDS	50.0%
	GACAGACACTCCTCAATCCT+CGG	-	tig0027943:43955-43974	None:intergenic	50.0%
	TGAGTGGTCCTGAGTACTCA+AGG	+	tig0027943:44347-44366	Msa1436490:CDS	50.0%
	TGGTCCTGAGTACTCAAGGA+AGG	+	tig0027943:44351-44370	Msa1436490:CDS	50.0%
!!	TAGAAAACAGAGGCACCAGG+TGG	-	tig0027943:44481-44500	None:intergenic	50.0%
!!	CTGTAGAAAACAGAGGCACC+AGG	-	tig0027943:44484-44503	None:intergenic	50.0%
!	CTGGTGCCTCTGTTTTCTAC+AGG	+	tig0027943:44482-44501	Msa1436490:CDS	50.0%
!	ATGAGTGCAGCCTCCTTTTC+TGG	-	tig0027943:44686-44705	None:intergenic	50.0%
	GGCTGCACTCATAGAGAACA+AGG	+	tig0027943:44694-44713	Msa1436490:CDS	50.0%
	GGCAGTTTCATCAGCAGTGT+TGG	+	tig0027943:44715-44734	Msa1436490:CDS	50.0%
!	CCCTGATCTTAAGCGCTGTT+TGG	+	tig0027943:44766-44785	Msa1436490:CDS	50.0%
	GCCAAACAGCGCTTAAGATC+AGG	-	tig0027943:44770-44789	None:intergenic	50.0%
	GCAGCACAAGAATGAGACCA+TGG	+	tig0027943:44883-44902	Msa1436490:three_prime_UTR	50.0%
	GGAACGAAATAAACGCCGCC+TGG	+	tig0027943:43436-43455	Msa1436490:five_prime_UTR	55.0%
	GAACCTTGAATACCCAGCGG+TGG	+	tig0027943:43589-43608	Msa1436490:CDS	55.0%
	TCATATTTCCTCGGTGGCGC+TGG	+	tig0027943:43635-43654	Msa1436490:CDS	55.0%
	CATATTTCCTCGGTGGCGCT+GGG	+	tig0027943:43636-43655	Msa1436490:CDS	55.0%
	ATATTTCCTCGGTGGCGCTG+GGG	+	tig0027943:43637-43656	Msa1436490:CDS	55.0%
	GACACATGTCCTCTGATCCG+AGG	+	tig0027943:43935-43954	Msa1436490:intron	55.0%
	GTCCTCTGATCCGAGGATTG+AGG	+	tig0027943:43942-43961	Msa1436490:intron	55.0%
	CTCCTCAATCCTCGGATCAG+AGG	-	tig0027943:43947-43966	None:intergenic	55.0%
	GGAACGAAATAAACGCCGCC+TGG	+	tig0027943:43436-43455	Msa1436490:five_prime_UTR	55.0%
	GAACCTTGAATACCCAGCGG+TGG	+	tig0027943:43589-43608	Msa1436490:CDS	55.0%
	TCATATTTCCTCGGTGGCGC+TGG	+	tig0027943:43635-43654	Msa1436490:CDS	55.0%
	CATATTTCCTCGGTGGCGCT+GGG	+	tig0027943:43636-43655	Msa1436490:CDS	55.0%
	ATATTTCCTCGGTGGCGCTG+GGG	+	tig0027943:43637-43656	Msa1436490:CDS	55.0%
	GACACATGTCCTCTGATCCG+AGG	+	tig0027943:43935-43954	Msa1436490:intron	55.0%
	GTCCTCTGATCCGAGGATTG+AGG	+	tig0027943:43942-43961	Msa1436490:intron	55.0%
	CTCCTCAATCCTCGGATCAG+AGG	-	tig0027943:43947-43966	None:intergenic	55.0%
	AATAGGAAGCGGTCTGGCCC+AGG	-	tig0027943:43457-43476	None:intergenic	60.0%
	GTGGTTACCTCTCCGGTCAC+CGG	+	tig0027943:43608-43627	Msa1436490:CDS	60.0%
!	TGATTTGCCGGTGACCGGAG+AGG	-	tig0027943:43618-43637	None:intergenic	60.0%
	GCACCCTCGTTCAACAACGC+AGG	-	tig0027943:44803-44822	None:intergenic	60.0%
	AATAGGAAGCGGTCTGGCCC+AGG	-	tig0027943:43457-43476	None:intergenic	60.0%
	GTGGTTACCTCTCCGGTCAC+CGG	+	tig0027943:43608-43627	Msa1436490:CDS	60.0%
!	TGATTTGCCGGTGACCGGAG+AGG	-	tig0027943:43618-43637	None:intergenic	60.0%
	GCACCCTCGTTCAACAACGC+AGG	-	tig0027943:44803-44822	None:intergenic	60.0%
	CCGGAGAGGTAACCACCGCT+GGG	-	tig0027943:43604-43623	None:intergenic	65.0%
	CCCAGCGGTGGTTACCTCTC+CGG	+	tig0027943:43601-43620	Msa1436490:CDS	65.0%
	ACCGGAGAGGTAACCACCGC+TGG	-	tig0027943:43605-43624	None:intergenic	65.0%
	CCGGAGAGGTAACCACCGCT+GGG	-	tig0027943:43604-43623	None:intergenic	65.0%
	CCCAGCGGTGGTTACCTCTC+CGG	+	tig0027943:43601-43620	Msa1436490:CDS	65.0%
	ACCGGAGAGGTAACCACCGC+TGG	-	tig0027943:43605-43624	None:intergenic	65.0%
	AGGAAGCGGTCTGGCCCAGG+CGG	-	tig0027943:43454-43473	None:intergenic	70.0%
	AGGAAGCGGTCTGGCCCAGG+CGG	-	tig0027943:43454-43473	None:intergenic	70.0%
	CTCTCTCCCCAGCGCCACCG+AGG	-	tig0027943:43646-43665	None:intergenic	75.0%
!	CTCGGTGGCGCTGGGGAGAG+AGG	+	tig0027943:43644-43663	Msa1436490:CDS	75.0%
	CTCTCTCCCCAGCGCCACCG+AGG	-	tig0027943:43646-43665	None:intergenic	75.0%
!	CTCGGTGGCGCTGGGGAGAG+AGG	+	tig0027943:43644-43663	Msa1436490:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
tig0027943	gene	43376	45125	43376	ID=Msa1436490;Name=Msa1436490
tig0027943	mRNA	43376	45125	43376	ID=Msa1436490-mRNA-1;Parent=Msa1436490;Name=Msa1436490-mRNA-1;_AED=0.37;_eAED=0.37;_QI=181\|1\|1\|1\|1\|1\|3\|284\|222
tig0027943	exon	43376	43815	43376	ID=Msa1436490-mRNA-1:exon:10242;Parent=Msa1436490-mRNA-1
tig0027943	exon	44305	44528	44305	ID=Msa1436490-mRNA-1:exon:10243;Parent=Msa1436490-mRNA-1
tig0027943	exon	44656	45125	44656	ID=Msa1436490-mRNA-1:exon:10244;Parent=Msa1436490-mRNA-1
tig0027943	five_prime_UTR	43376	43556	43376	ID=Msa1436490-mRNA-1:five_prime_utr;Parent=Msa1436490-mRNA-1
tig0027943	CDS	43557	43815	43557	ID=Msa1436490-mRNA-1:cds;Parent=Msa1436490-mRNA-1
tig0027943	CDS	44305	44528	44305	ID=Msa1436490-mRNA-1:cds;Parent=Msa1436490-mRNA-1
tig0027943	CDS	44656	44841	44656	ID=Msa1436490-mRNA-1:cds;Parent=Msa1436490-mRNA-1
tig0027943	three_prime_UTR	44842	45125	44842	ID=Msa1436490-mRNA-1:three_prime_utr;Parent=Msa1436490-mRNA-1

Gene Sequence

>Msa1436490

ATGGCTGCATCAATCACCGCAATCACTGTGGAGAACCTTGAATACCCAGCGGTGGTTACCTCTCCGGTCACCGGCAAATCATATTTCCTCGGTGGCGCTGGGGAGAGAGGATTGACCATTGAAGGAAACTTCATCAAGTTCACTGCCATAGGTGTTTATTTGGAAGATATAGCAGTGGCTTCACTAGCTGCCAAATGGAAGGGTAAATCATCTGAAGAGTTACTTGAGACCCTCGACTTTTACAGAGACATCATCTCAGGTCCCTTTGAAAAGTTAATTAGAGGGTCAAAGATTAGGGAATTGAGTGGTCCTGAGTACTCAAGGAAGGTTATGGAGAACTGTGTGGCACACTTGAAATCAGTTGGAACTTATGGAGATGCAGAAGCTGAAGCTATGCAAAAATTTGCTGAAGCTTTCAAGCCTGTTAATTTTCCACCTGGTGCCTCTGTTTTCTACAGGCAATCACCTGATGGAATATTAGGGCTTAGTTTCTCTCCGGATACAAGTATACCAGAAAAGGAGGCTGCACTCATAGAGAACAAGGCAGTTTCATCAGCAGTGTTGGAGACTATGATCGGCGAACACGCTGTTTCCCCTGATCTTAAGCGCTGTTTGGCTGCAAGATTACCTGCGTTGTTGAACGAGGGTGCTTTCAAGATTGGAAACTGA

Protein sequence

>Msa1436490

MAASITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNEGAFKIGN*