AlfalfaGEDB | Msa1409690

M. sativa cultivar zhongmu-4 / Msa1409690

KEGG: K01859
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009812 GO:0009813 GO:0012505 GO:0016853 GO:0016872 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045430 GO:0050896 GO:0071704 GO:0080167 GO:1901576
PFAM: PF02431.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1409690	P28012.1	100.000	222	0	0	1	222	1	222	4.82e-159	449

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1409690	sp\|P28012\|CFI1_MEDSA	100.000	222	0	0	1	222	1	222	6.02e-162	449

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1409690	U5TRY3	100.000	222	0	0	1	222	1	222	2.30e-159	449

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0046170	Msa1409690	0.992694	7.443545e-195	-8.615850e-47
Msa0090380	Msa1409690	0.817538	3.130753e-52	-8.615850e-47
Msa1384700	Msa1409690	0.803406	3.539062e-49	-8.615850e-47
Msa1409690	Msa1433410	0.812907	3.346831e-51	-8.615850e-47
Msa1409690	Msa1436490	0.985541	6.870933e-164	-8.615850e-47
Msa1409690	Msa1459920	0.805909	1.063314e-49	-8.615850e-47
Msa0615200	Msa1409690	0.817171	3.786438e-52	-8.615850e-47
Msa0615210	Msa1409690	0.819116	1.374914e-52	-8.615850e-47
Msa0652590	Msa1409690	0.821409	4.099959e-53	-8.615850e-47
Msa0744710	Msa1409690	0.806025	1.005212e-49	-8.615850e-47
Msa0754480	Msa1409690	0.803794	2.940506e-49	-8.615850e-47
Msa0826240	Msa1409690	0.803938	2.745298e-49	-8.615850e-47
Msa0137860	Msa1409690	0.804924	1.710365e-49	-8.615850e-47
Msa0139530	Msa1409690	0.993375	2.647139e-199	-8.615850e-47
Msa1027340	Msa1409690	0.837664	4.547393e-57	-8.615850e-47
Msa1027400	Msa1409690	0.843214	1.607465e-58	-8.615850e-47
Msa1034450	Msa1409690	0.815595	8.531599e-52	-8.615850e-47
Msa1074200	Msa1409690	0.811123	8.193565e-51	-8.615850e-47
Msa1077970	Msa1409690	0.826779	2.249811e-54	-8.615850e-47
Msa0242720	Msa1409690	0.803851	2.861506e-49	-8.615850e-47
Msa0320170	Msa1409690	0.811308	7.470347e-51	-8.615850e-47
Msa1110900	Msa1409690	0.801690	7.993750e-49	-8.615850e-47
Msa1114670	Msa1409690	0.834045	3.761451e-56	-8.615850e-47
Msa1133700	Msa1409690	0.808663	2.773162e-50	-8.615850e-47
Msa1154570	Msa1409690	0.838482	2.801016e-57	-8.615850e-47
Msa1157110	Msa1409690	0.813351	2.675300e-51	-8.615850e-47
Msa1159170	Msa1409690	0.825291	5.079330e-54	-8.615850e-47
Msa0590390	Msa1409690	0.800852	1.186329e-48	-8.615850e-47
Msa0967750	Msa1409690	0.981431	1.428939e-152	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1409690	MtrunA17_Chr1g0213011	98.198	222	4	0	1	222	1	222	1.01e-161	445
Msa1409690	MtrunA17_Chr1g0213021	62.896	221	82	0	2	222	5	225	7.70e-98	284
Msa1409690	MtrunA17_Chr1g0213031	61.187	219	85	0	2	220	5	223	8.08e-93	271
Msa1409690	MtrunA17_Chr1g0213041	54.884	215	95	1	4	216	5	219	1.75e-80	240
Msa1409690	MtrunA17_Chr1g0213051	52.804	214	99	1	4	215	5	218	7.94e-78	233
Msa1409690	MtrunA17_Chr7g0224381	50.000	162	81	0	4	165	5	166	4.81e-56	176
Msa1409690	MtrunA17_Chr3g0128761	32.086	187	116	5	29	209	15	196	1.83e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1409690	AT3G55120.1	49.048	210	107	0	4	213	15	224	3.16e-67	207
Msa1409690	AT5G66230.2	42.453	212	114	1	4	215	5	208	1.27e-53	180
Msa1409690	AT5G66220.1	42.767	159	91	0	57	215	1	159	5.51e-44	145
Msa1409690	AT5G05270.1	28.708	209	142	4	8	214	6	209	6.90e-13	65.5
Msa1409690	AT5G05270.2	28.708	209	142	4	8	214	6	209	6.90e-13	65.5

Find 80 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGACCAATTCACCTATTT+TGG	0.093565	tig0023536:+8715	None:intergenic
AGCTATGATGTTTCAGATTT+TGG	0.159725	tig0023536:+8603	None:intergenic
CAATCACCTGATGGAATATT+AGG	0.209322	tig0023536:-7605	Msa1409690:CDS
CACTGCCATAGGTGTTTATT+TGG	0.211608	tig0023536:-8414	Msa1409690:CDS
TTGAAATCAGTTGGAACTTA+TGG	0.230001	tig0023536:-7713	Msa1409690:CDS
TTCTTGTGCTGCAACGCTTT+TGG	0.248420	tig0023536:+7235	None:intergenic
AATTAGAGGGTCAAAGATTA+GGG	0.310626	tig0023536:-7789	Msa1409690:CDS
CTTGATGAAGTTTCCTTCAA+TGG	0.330932	tig0023536:+8439	None:intergenic
CCCTGATCTTAAGCGCTGTT+TGG	0.332738	tig0023536:-7341	Msa1409690:CDS
AATAATTAAGAACAAGAATA+TGG	0.334406	tig0023536:-8573	Msa1409690:exon
AACGAGGGTGCTTTCAAGAT+TGG	0.337469	tig0023536:-7295	Msa1409690:CDS
TAATTAGAGGGTCAAAGATT+AGG	0.343487	tig0023536:-7790	Msa1409690:CDS
AAAATCCAAAATAGGTGAAT+TGG	0.349824	tig0023536:-8720	Msa1409690:five_prime_UTR
TCATATTTCCTCGGTGGCGC+TGG	0.355424	tig0023536:-8476	Msa1409690:CDS
CCCTTTGAAAAGTTAATTAG+AGG	0.361486	tig0023536:-7803	Msa1409690:CDS
AATCACCTGATGGAATATTA+GGG	0.365814	tig0023536:-7604	Msa1409690:CDS
TCAAATAAAATACATGCAAC+TGG	0.398245	tig0023536:-8697	Msa1409690:five_prime_UTR
GCCAAACAGCGCTTAAGATC+AGG	0.410390	tig0023536:+7340	None:intergenic
GCACCAGGTGGAAAATTAAC+AGG	0.410631	tig0023536:+7644	None:intergenic
ACCGAGGAAATATGATTTGC+CGG	0.416952	tig0023536:+8484	None:intergenic
AGATGATTTACCCTTCCATT+TGG	0.439741	tig0023536:+8364	None:intergenic
ACTTGCGTTAAGTGAAGAAC+GGG	0.443654	tig0023536:+8631	None:intergenic
GGCAGTTTCATCAGCAGTGT+TGG	0.459798	tig0023536:-7392	Msa1409690:CDS
CTCGGTGGCGCTGGGGAGAG+AGG	0.461142	tig0023536:-8467	Msa1409690:CDS
CATATTTCCTCGGTGGCGCT+GGG	0.461249	tig0023536:-8475	Msa1409690:CDS
GGAACGAAATAAACGCCGCC+TGG	0.467910	tig0023536:-8676	Msa1409690:five_prime_UTR
AAATATGATTTGCCGGTGAC+CGG	0.472992	tig0023536:+8491	None:intergenic
ACCGGAGAGGTAACCACCGC+TGG	0.477165	tig0023536:+8509	None:intergenic
TGAGTACTCAAGGAAGGTTA+TGG	0.487878	tig0023536:-7753	Msa1409690:CDS
TAACCACCGCTGGGTATTCA+AGG	0.488480	tig0023536:+8519	None:intergenic
GGATACAAGTATACCAGAAA+AGG	0.490457	tig0023536:-7437	Msa1409690:CDS
AATAGGAAGCGGTCTGGCCC+AGG	0.492465	tig0023536:+8658	None:intergenic
CCCAGCGGTGGTTACCTCTC+CGG	0.492838	tig0023536:-8510	Msa1409690:CDS
TATTATTGATACTAATAAGA+AGG	0.499753	tig0023536:+7158	None:intergenic
TGGCTTCACTAGCTGCCAAA+TGG	0.503292	tig0023536:-8379	Msa1409690:CDS
GTTACAGCTTAGTTTCTCTC+CGG	0.504378	tig0023536:-7458	Msa1409690:intron
GAGAGAGGATTGACCATTGA+AGG	0.509487	tig0023536:-8452	Msa1409690:CDS
CTAACCCCTAATATTCCATC+AGG	0.511312	tig0023536:+7599	None:intergenic
ATCTTCCAAATAAACACCTA+TGG	0.512141	tig0023536:+8409	None:intergenic
GTGGTTACCTCTCCGGTCAC+CGG	0.524005	tig0023536:-8503	Msa1409690:CDS
TTCACTAGCTGCCAAATGGA+AGG	0.526249	tig0023536:-8375	Msa1409690:CDS
CCAAACAGCGCTTAAGATCA+GGG	0.532079	tig0023536:+7341	None:intergenic
TTCTACAGGCAATCACCTGA+TGG	0.554083	tig0023536:-7614	Msa1409690:CDS
GAACGAAATAAACGCCGCCT+GGG	0.554703	tig0023536:-8675	Msa1409690:five_prime_UTR
GACTTGCGTTAAGTGAAGAA+CGG	0.560970	tig0023536:+8630	None:intergenic
GGCTGCACTCATAGAGAACA+AGG	0.569164	tig0023536:-7413	Msa1409690:CDS
ACCGGCAAATCATATTTCCT+CGG	0.576452	tig0023536:-8485	Msa1409690:CDS
TGAGTGGTCCTGAGTACTCA+AGG	0.577740	tig0023536:-7763	Msa1409690:CDS
CTCTCTCCCCAGCGCCACCG+AGG	0.582911	tig0023536:+8468	None:intergenic
CTGTAGAAAACAGAGGCACC+AGG	0.591901	tig0023536:+7629	None:intergenic
CCTTTGAAAAGTTAATTAGA+GGG	0.595496	tig0023536:-7802	Msa1409690:CDS
ATTACCTGCGTTGTTGAACG+AGG	0.600190	tig0023536:-7311	Msa1409690:CDS
TGATGTCTCTGTAAAAGTCG+AGG	0.602205	tig0023536:+8324	None:intergenic
ATAACCTTCCTTGAGTACTC+AGG	0.607676	tig0023536:+7755	None:intergenic
TTCATCAAGTTCACTGCCAT+AGG	0.610295	tig0023536:-8425	Msa1409690:CDS
GCAGTGTTGGAGACTATGAT+CGG	0.622152	tig0023536:-7379	Msa1409690:CDS
AGGAAGCGGTCTGGCCCAGG+CGG	0.623344	tig0023536:+8661	None:intergenic
TCACTAGCTGCCAAATGGAA+GGG	0.624312	tig0023536:-8374	Msa1409690:CDS
GTGGCACACTTGAAATCAGT+TGG	0.625898	tig0023536:-7722	Msa1409690:CDS
GATGTCTCTGTAAAAGTCGA+GGG	0.629213	tig0023536:+8325	None:intergenic
CCGGAGAGGTAACCACCGCT+GGG	0.632340	tig0023536:+8510	None:intergenic
TACAAGTATACCAGAAAAGG+AGG	0.632960	tig0023536:-7434	Msa1409690:CDS
TGGTCCTGAGTACTCAAGGA+AGG	0.639707	tig0023536:-7759	Msa1409690:CDS
GGCAAATCATATTTCCTCGG+TGG	0.648065	tig0023536:-8482	Msa1409690:CDS
AAGGTTCTCCACAGTGATTG+CGG	0.648293	tig0023536:+8538	None:intergenic
ATATTTCCTCGGTGGCGCTG+GGG	0.654176	tig0023536:-8474	Msa1409690:CDS
GCACCCTCGTTCAACAACGC+AGG	0.670342	tig0023536:+7307	None:intergenic
TGATTTGCCGGTGACCGGAG+AGG	0.671162	tig0023536:+8496	None:intergenic
TTATTTGGAAGATATAGCAG+TGG	0.671898	tig0023536:-8399	Msa1409690:CDS
GAACCTTGAATACCCAGCGG+TGG	0.677026	tig0023536:-8522	Msa1409690:CDS
CAAACAGCGCTTAAGATCAG+GGG	0.682290	tig0023536:+7342	None:intergenic
TTACCTGCGTTGTTGAACGA+GGG	0.686961	tig0023536:-7310	Msa1409690:CDS
ATCACCTGATGGAATATTAG+GGG	0.689762	tig0023536:-7603	Msa1409690:intron
TCAAAGATTAGGGAATTGAG+TGG	0.698363	tig0023536:-7779	Msa1409690:CDS
TAGAAAACAGAGGCACCAGG+TGG	0.700225	tig0023536:+7632	None:intergenic
GCAGCACAAGAATGAGACCA+TGG	0.722638	tig0023536:-7224	Msa1409690:three_prime_UTR
ATCAATCACCGCAATCACTG+TGG	0.724881	tig0023536:-8546	Msa1409690:CDS
GAAGGTTATGGAGAACTGTG+TGG	0.734369	tig0023536:-7741	Msa1409690:CDS
TGATTGCCTGTAGAAAACAG+AGG	0.767471	tig0023536:+7622	None:intergenic
GGAGAACCTTGAATACCCAG+CGG	0.782943	tig0023536:-8525	Msa1409690:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAATTAAGAACAAGAATA+TGG	-	tig0023536:7167-7186	Msa1409690:three_prime_UTR	15.0%
!!	AAATCATTTAATTAATTGCA+AGG	+	tig0023536:7482-7501	None:intergenic	15.0%
!!	GTAATACTATAGTATTTAAT+TGG	+	tig0023536:7797-7816	None:intergenic	15.0%
!!!	TGATAAATTGATAATTTTGT+AGG	-	tig0023536:7913-7932	Msa1409690:intron	15.0%
!!!	TTTTAATATACTAGTATTAG+TGG	+	tig0023536:8256-8275	None:intergenic	15.0%
!!	TATTATTGATACTAATAAGA+AGG	+	tig0023536:8585-8604	None:intergenic	15.0%
!!	AATAATTAAGAACAAGAATA+TGG	-	tig0023536:7167-7186	Msa1409690:three_prime_UTR	15.0%
!!	AAATCATTTAATTAATTGCA+AGG	+	tig0023536:7482-7501	None:intergenic	15.0%
!!	GTAATACTATAGTATTTAAT+TGG	+	tig0023536:7797-7816	None:intergenic	15.0%
!!!	TGATAAATTGATAATTTTGT+AGG	-	tig0023536:7913-7932	Msa1409690:intron	15.0%
!!!	TTTTAATATACTAGTATTAG+TGG	+	tig0023536:8256-8275	None:intergenic	15.0%
!!	TATTATTGATACTAATAAGA+AGG	+	tig0023536:8585-8604	None:intergenic	15.0%
!!	AGAAAAGAAAAATCCAAAAT+AGG	-	tig0023536:7012-7031	Msa1409690:three_prime_UTR	20.0%
!!	GTTAGACTTTAATTAATTCT+TGG	+	tig0023536:7707-7726	None:intergenic	20.0%
!!	AATTAAAGTCTAACATACAA+CGG	-	tig0023536:7713-7732	Msa1409690:CDS	20.0%
!!	AGTTAAGAAACAGAATTAAT+TGG	+	tig0023536:8178-8197	None:intergenic	20.0%
!!!	TTTCTTAACTATTTTAGTTG+AGG	-	tig0023536:8188-8207	Msa1409690:intron	20.0%
!!	AGAAAAGAAAAATCCAAAAT+AGG	-	tig0023536:7012-7031	Msa1409690:three_prime_UTR	20.0%
!!	GTTAGACTTTAATTAATTCT+TGG	+	tig0023536:7707-7726	None:intergenic	20.0%
!!	AATTAAAGTCTAACATACAA+CGG	-	tig0023536:7713-7732	Msa1409690:CDS	20.0%
!!	AGTTAAGAAACAGAATTAAT+TGG	+	tig0023536:8178-8197	None:intergenic	20.0%
!!!	TTTCTTAACTATTTTAGTTG+AGG	-	tig0023536:8188-8207	Msa1409690:intron	20.0%
!	AAAATCCAAAATAGGTGAAT+TGG	-	tig0023536:7020-7039	Msa1409690:three_prime_UTR	25.0%
!	TCAAATAAAATACATGCAAC+TGG	-	tig0023536:7043-7062	Msa1409690:three_prime_UTR	25.0%
!!!	CATTTTTTAACATATGAAGC+TGG	-	tig0023536:7537-7556	Msa1409690:intron	25.0%
!	AATGTGAGTAAAAACTATGA+AGG	+	tig0023536:7606-7625	None:intergenic	25.0%
!	TCAATAAGACTCATATGATT+TGG	+	tig0023536:7672-7691	None:intergenic	25.0%
!	TTTAATTGGATGAATTCAAG+TGG	+	tig0023536:7783-7802	None:intergenic	25.0%
!!	CCTCTAATTAACTTTTCAAA+GGG	+	tig0023536:7940-7959	None:intergenic	25.0%
!!	CCTTTGAAAAGTTAATTAGA+GGG	-	tig0023536:7938-7957	Msa1409690:intron	25.0%
!	ATATACTAGTATTAGTGGAA+AGG	+	tig0023536:8251-8270	None:intergenic	25.0%
!	AAAATCCAAAATAGGTGAAT+TGG	-	tig0023536:7020-7039	Msa1409690:three_prime_UTR	25.0%
!	TCAAATAAAATACATGCAAC+TGG	-	tig0023536:7043-7062	Msa1409690:three_prime_UTR	25.0%
!!!	CATTTTTTAACATATGAAGC+TGG	-	tig0023536:7537-7556	Msa1409690:intron	25.0%
!	AATGTGAGTAAAAACTATGA+AGG	+	tig0023536:7606-7625	None:intergenic	25.0%
!	TCAATAAGACTCATATGATT+TGG	+	tig0023536:7672-7691	None:intergenic	25.0%
!	TTTAATTGGATGAATTCAAG+TGG	+	tig0023536:7783-7802	None:intergenic	25.0%
!!	CCTCTAATTAACTTTTCAAA+GGG	+	tig0023536:7940-7959	None:intergenic	25.0%
!!	CCTTTGAAAAGTTAATTAGA+GGG	-	tig0023536:7938-7957	Msa1409690:intron	25.0%
!	ATATACTAGTATTAGTGGAA+AGG	+	tig0023536:8251-8270	None:intergenic	25.0%
!	TTTGACCAATTCACCTATTT+TGG	+	tig0023536:7028-7047	None:intergenic	30.0%
!	AGCTATGATGTTTCAGATTT+TGG	+	tig0023536:7140-7159	None:intergenic	30.0%
	ATCTTCCAAATAAACACCTA+TGG	+	tig0023536:7334-7353	None:intergenic	30.0%
	TTATTTGGAAGATATAGCAG+TGG	-	tig0023536:7341-7360	Msa1409690:CDS	30.0%
!!	CTCATATGATTTGGTTGATT+AGG	+	tig0023536:7663-7682	None:intergenic	30.0%
!!	AGTCTTATTGATGTAGAGTT+CGG	-	tig0023536:7681-7700	Msa1409690:CDS	30.0%
!	CCCTTTGAAAAGTTAATTAG+AGG	-	tig0023536:7937-7956	Msa1409690:intron	30.0%
!	CCCTCTAATTAACTTTTCAA+AGG	+	tig0023536:7941-7960	None:intergenic	30.0%
	TAATTAGAGGGTCAAAGATT+AGG	-	tig0023536:7950-7969	Msa1409690:intron	30.0%
	AATTAGAGGGTCAAAGATTA+GGG	-	tig0023536:7951-7970	Msa1409690:intron	30.0%
	TTGAAATCAGTTGGAACTTA+TGG	-	tig0023536:8027-8046	Msa1409690:intron	30.0%
	AATCACCTGATGGAATATTA+GGG	-	tig0023536:8136-8155	Msa1409690:intron	30.0%
!!	TTTTCTGGTATACTTGTATC+CGG	+	tig0023536:8304-8323	None:intergenic	30.0%
	TGTAGACTTAAAAAAGTCCA+TGG	+	tig0023536:8536-8555	None:intergenic	30.0%
!	TTTGACCAATTCACCTATTT+TGG	+	tig0023536:7028-7047	None:intergenic	30.0%
!	AGCTATGATGTTTCAGATTT+TGG	+	tig0023536:7140-7159	None:intergenic	30.0%
	ATCTTCCAAATAAACACCTA+TGG	+	tig0023536:7334-7353	None:intergenic	30.0%
	TTATTTGGAAGATATAGCAG+TGG	-	tig0023536:7341-7360	Msa1409690:CDS	30.0%
!!	CTCATATGATTTGGTTGATT+AGG	+	tig0023536:7663-7682	None:intergenic	30.0%
!!	AGTCTTATTGATGTAGAGTT+CGG	-	tig0023536:7681-7700	Msa1409690:CDS	30.0%
!	CCCTTTGAAAAGTTAATTAG+AGG	-	tig0023536:7937-7956	Msa1409690:intron	30.0%
!	CCCTCTAATTAACTTTTCAA+AGG	+	tig0023536:7941-7960	None:intergenic	30.0%
	TAATTAGAGGGTCAAAGATT+AGG	-	tig0023536:7950-7969	Msa1409690:intron	30.0%
	AATTAGAGGGTCAAAGATTA+GGG	-	tig0023536:7951-7970	Msa1409690:intron	30.0%
	TTGAAATCAGTTGGAACTTA+TGG	-	tig0023536:8027-8046	Msa1409690:intron	30.0%
	AATCACCTGATGGAATATTA+GGG	-	tig0023536:8136-8155	Msa1409690:intron	30.0%
!!	TTTTCTGGTATACTTGTATC+CGG	+	tig0023536:8304-8323	None:intergenic	30.0%
	TGTAGACTTAAAAAAGTCCA+TGG	+	tig0023536:8536-8555	None:intergenic	30.0%
!!	AGTGAAGAACGGGTTTTAAT+AGG	+	tig0023536:7102-7121	None:intergenic	35.0%
	CTTGATGAAGTTTCCTTCAA+TGG	+	tig0023536:7304-7323	None:intergenic	35.0%
	AGATGATTTACCCTTCCATT+TGG	+	tig0023536:7379-7398	None:intergenic	35.0%
!	TTTTACAGAGACATCATCTC+AGG	-	tig0023536:7423-7442	Msa1409690:CDS	35.0%
	TCAAAGATTAGGGAATTGAG+TGG	-	tig0023536:7961-7980	Msa1409690:intron	35.0%
	CAATCACCTGATGGAATATT+AGG	-	tig0023536:8135-8154	Msa1409690:intron	35.0%
	ATCACCTGATGGAATATTAG+GGG	-	tig0023536:8137-8156	Msa1409690:intron	35.0%
	GGATACAAGTATACCAGAAA+AGG	-	tig0023536:8303-8322	Msa1409690:intron	35.0%
	TACAAGTATACCAGAAAAGG+AGG	-	tig0023536:8306-8325	Msa1409690:intron	35.0%
!!	AGTGAAGAACGGGTTTTAAT+AGG	+	tig0023536:7102-7121	None:intergenic	35.0%
	CTTGATGAAGTTTCCTTCAA+TGG	+	tig0023536:7304-7323	None:intergenic	35.0%
	AGATGATTTACCCTTCCATT+TGG	+	tig0023536:7379-7398	None:intergenic	35.0%
!	TTTTACAGAGACATCATCTC+AGG	-	tig0023536:7423-7442	Msa1409690:CDS	35.0%
	TCAAAGATTAGGGAATTGAG+TGG	-	tig0023536:7961-7980	Msa1409690:intron	35.0%
	CAATCACCTGATGGAATATT+AGG	-	tig0023536:8135-8154	Msa1409690:intron	35.0%
	ATCACCTGATGGAATATTAG+GGG	-	tig0023536:8137-8156	Msa1409690:intron	35.0%
	GGATACAAGTATACCAGAAA+AGG	-	tig0023536:8303-8322	Msa1409690:intron	35.0%
	TACAAGTATACCAGAAAAGG+AGG	-	tig0023536:8306-8325	Msa1409690:intron	35.0%
!!	GAACGGGTTTTAATAGGAAG+CGG	+	tig0023536:7096-7115	None:intergenic	40.0%
	ACTTGCGTTAAGTGAAGAAC+GGG	+	tig0023536:7112-7131	None:intergenic	40.0%
	GACTTGCGTTAAGTGAAGAA+CGG	+	tig0023536:7113-7132	None:intergenic	40.0%
!	AAATATGATTTGCCGGTGAC+CGG	+	tig0023536:7252-7271	None:intergenic	40.0%
	ACCGGCAAATCATATTTCCT+CGG	-	tig0023536:7255-7274	Msa1409690:three_prime_UTR	40.0%
!	ACCGAGGAAATATGATTTGC+CGG	+	tig0023536:7259-7278	None:intergenic	40.0%
	TTCATCAAGTTCACTGCCAT+AGG	-	tig0023536:7315-7334	Msa1409690:CDS	40.0%
	CACTGCCATAGGTGTTTATT+TGG	-	tig0023536:7326-7345	Msa1409690:CDS	40.0%
	GATGTCTCTGTAAAAGTCGA+GGG	+	tig0023536:7418-7437	None:intergenic	40.0%
	TGATGTCTCTGTAAAAGTCG+AGG	+	tig0023536:7419-7438	None:intergenic	40.0%
	ATAACCTTCCTTGAGTACTC+AGG	+	tig0023536:7988-8007	None:intergenic	40.0%
	TGAGTACTCAAGGAAGGTTA+TGG	-	tig0023536:7987-8006	Msa1409690:intron	40.0%
!	AAGCCTGTTAATTTTCCACC+TGG	-	tig0023536:8093-8112	Msa1409690:intron	40.0%
	TGATTGCCTGTAGAAAACAG+AGG	+	tig0023536:8121-8140	None:intergenic	40.0%
	CTAACCCCTAATATTCCATC+AGG	+	tig0023536:8144-8163	None:intergenic	40.0%
	GTTACAGCTTAGTTTCTCTC+CGG	-	tig0023536:8282-8301	Msa1409690:intron	40.0%
	TGAGTAGAGTTGCTTAACTG+AGG	-	tig0023536:8738-8757	Msa1409690:five_prime_UTR	40.0%
!!	GAACGGGTTTTAATAGGAAG+CGG	+	tig0023536:7096-7115	None:intergenic	40.0%
	ACTTGCGTTAAGTGAAGAAC+GGG	+	tig0023536:7112-7131	None:intergenic	40.0%
	GACTTGCGTTAAGTGAAGAA+CGG	+	tig0023536:7113-7132	None:intergenic	40.0%
!	AAATATGATTTGCCGGTGAC+CGG	+	tig0023536:7252-7271	None:intergenic	40.0%
	ACCGGCAAATCATATTTCCT+CGG	-	tig0023536:7255-7274	Msa1409690:three_prime_UTR	40.0%
!	ACCGAGGAAATATGATTTGC+CGG	+	tig0023536:7259-7278	None:intergenic	40.0%
	TTCATCAAGTTCACTGCCAT+AGG	-	tig0023536:7315-7334	Msa1409690:CDS	40.0%
	CACTGCCATAGGTGTTTATT+TGG	-	tig0023536:7326-7345	Msa1409690:CDS	40.0%
	GATGTCTCTGTAAAAGTCGA+GGG	+	tig0023536:7418-7437	None:intergenic	40.0%
	TGATGTCTCTGTAAAAGTCG+AGG	+	tig0023536:7419-7438	None:intergenic	40.0%
	ATAACCTTCCTTGAGTACTC+AGG	+	tig0023536:7988-8007	None:intergenic	40.0%
	TGAGTACTCAAGGAAGGTTA+TGG	-	tig0023536:7987-8006	Msa1409690:intron	40.0%
!	AAGCCTGTTAATTTTCCACC+TGG	-	tig0023536:8093-8112	Msa1409690:intron	40.0%
	TGATTGCCTGTAGAAAACAG+AGG	+	tig0023536:8121-8140	None:intergenic	40.0%
	CTAACCCCTAATATTCCATC+AGG	+	tig0023536:8144-8163	None:intergenic	40.0%
	GTTACAGCTTAGTTTCTCTC+CGG	-	tig0023536:8282-8301	Msa1409690:intron	40.0%
!!	GGTTTTAATAGGAAGCGGTC+TGG	+	tig0023536:7091-7110	None:intergenic	45.0%
	ATCAATCACCGCAATCACTG+TGG	-	tig0023536:7194-7213	Msa1409690:three_prime_UTR	45.0%
	AAGGTTCTCCACAGTGATTG+CGG	+	tig0023536:7205-7224	None:intergenic	45.0%
	GGCAAATCATATTTCCTCGG+TGG	-	tig0023536:7258-7277	Msa1409690:three_prime_UTR	45.0%
	GAGAGAGGATTGACCATTGA+AGG	-	tig0023536:7288-7307	Msa1409690:CDS	45.0%
	TTCACTAGCTGCCAAATGGA+AGG	-	tig0023536:7365-7384	Msa1409690:CDS	45.0%
	TCACTAGCTGCCAAATGGAA+GGG	-	tig0023536:7366-7385	Msa1409690:CDS	45.0%
	GAAGGTTATGGAGAACTGTG+TGG	-	tig0023536:7999-8018	Msa1409690:intron	45.0%
	GTGGCACACTTGAAATCAGT+TGG	-	tig0023536:8018-8037	Msa1409690:intron	45.0%
	GCACCAGGTGGAAAATTAAC+AGG	+	tig0023536:8099-8118	None:intergenic	45.0%
	TTCTACAGGCAATCACCTGA+TGG	-	tig0023536:8126-8145	Msa1409690:intron	45.0%
!	GCAGTGTTGGAGACTATGAT+CGG	-	tig0023536:8361-8380	Msa1409690:CDS	45.0%
	CAAACAGCGCTTAAGATCAG+GGG	+	tig0023536:8401-8420	None:intergenic	45.0%
	CCAAACAGCGCTTAAGATCA+GGG	+	tig0023536:8402-8421	None:intergenic	45.0%
	ATTACCTGCGTTGTTGAACG+AGG	-	tig0023536:8429-8448	Msa1409690:CDS	45.0%
	TTACCTGCGTTGTTGAACGA+GGG	-	tig0023536:8430-8449	Msa1409690:CDS	45.0%
!!	AACGAGGGTGCTTTCAAGAT+TGG	-	tig0023536:8445-8464	Msa1409690:CDS	45.0%
!	TTCTTGTGCTGCAACGCTTT+TGG	+	tig0023536:8508-8527	None:intergenic	45.0%
!!	GGTTTTAATAGGAAGCGGTC+TGG	+	tig0023536:7091-7110	None:intergenic	45.0%
	ATCAATCACCGCAATCACTG+TGG	-	tig0023536:7194-7213	Msa1409690:three_prime_UTR	45.0%
	AAGGTTCTCCACAGTGATTG+CGG	+	tig0023536:7205-7224	None:intergenic	45.0%
	GGCAAATCATATTTCCTCGG+TGG	-	tig0023536:7258-7277	Msa1409690:three_prime_UTR	45.0%
	GAGAGAGGATTGACCATTGA+AGG	-	tig0023536:7288-7307	Msa1409690:CDS	45.0%
	TTCACTAGCTGCCAAATGGA+AGG	-	tig0023536:7365-7384	Msa1409690:CDS	45.0%
	TCACTAGCTGCCAAATGGAA+GGG	-	tig0023536:7366-7385	Msa1409690:CDS	45.0%
	GAAGGTTATGGAGAACTGTG+TGG	-	tig0023536:7999-8018	Msa1409690:intron	45.0%
	GTGGCACACTTGAAATCAGT+TGG	-	tig0023536:8018-8037	Msa1409690:intron	45.0%
	GCACCAGGTGGAAAATTAAC+AGG	+	tig0023536:8099-8118	None:intergenic	45.0%
	TTCTACAGGCAATCACCTGA+TGG	-	tig0023536:8126-8145	Msa1409690:intron	45.0%
!	GCAGTGTTGGAGACTATGAT+CGG	-	tig0023536:8361-8380	Msa1409690:CDS	45.0%
	CAAACAGCGCTTAAGATCAG+GGG	+	tig0023536:8401-8420	None:intergenic	45.0%
	CCAAACAGCGCTTAAGATCA+GGG	+	tig0023536:8402-8421	None:intergenic	45.0%
	ATTACCTGCGTTGTTGAACG+AGG	-	tig0023536:8429-8448	Msa1409690:CDS	45.0%
	TTACCTGCGTTGTTGAACGA+GGG	-	tig0023536:8430-8449	Msa1409690:CDS	45.0%
!!	AACGAGGGTGCTTTCAAGAT+TGG	-	tig0023536:8445-8464	Msa1409690:CDS	45.0%
!	TTCTTGTGCTGCAACGCTTT+TGG	+	tig0023536:8508-8527	None:intergenic	45.0%
	GAACGAAATAAACGCCGCCT+GGG	-	tig0023536:7065-7084	Msa1409690:three_prime_UTR	50.0%
	GGAGAACCTTGAATACCCAG+CGG	-	tig0023536:7215-7234	Msa1409690:three_prime_UTR	50.0%
	TAACCACCGCTGGGTATTCA+AGG	+	tig0023536:7224-7243	None:intergenic	50.0%
	TGGCTTCACTAGCTGCCAAA+TGG	-	tig0023536:7361-7380	Msa1409690:CDS	50.0%
	GACAGACACTCCTCAATCCT+CGG	+	tig0023536:7584-7603	None:intergenic	50.0%
	TGAGTGGTCCTGAGTACTCA+AGG	-	tig0023536:7977-7996	Msa1409690:intron	50.0%
	TGGTCCTGAGTACTCAAGGA+AGG	-	tig0023536:7981-8000	Msa1409690:intron	50.0%
!!	TAGAAAACAGAGGCACCAGG+TGG	+	tig0023536:8111-8130	None:intergenic	50.0%
!!	CTGTAGAAAACAGAGGCACC+AGG	+	tig0023536:8114-8133	None:intergenic	50.0%
!	CTGGTGCCTCTGTTTTCTAC+AGG	-	tig0023536:8112-8131	Msa1409690:intron	50.0%
!	ATGAGTGCAGCCTCCTTTTC+TGG	+	tig0023536:8319-8338	None:intergenic	50.0%
	GGCTGCACTCATAGAGAACA+AGG	-	tig0023536:8327-8346	Msa1409690:CDS	50.0%
	GGCAGTTTCATCAGCAGTGT+TGG	-	tig0023536:8348-8367	Msa1409690:CDS	50.0%
!	CCCTGATCTTAAGCGCTGTT+TGG	-	tig0023536:8399-8418	Msa1409690:CDS	50.0%
	GCCAAACAGCGCTTAAGATC+AGG	+	tig0023536:8403-8422	None:intergenic	50.0%
	GCAGCACAAGAATGAGACCA+TGG	-	tig0023536:8516-8535	Msa1409690:CDS	50.0%
	GAACGAAATAAACGCCGCCT+GGG	-	tig0023536:7065-7084	Msa1409690:three_prime_UTR	50.0%
	GGAGAACCTTGAATACCCAG+CGG	-	tig0023536:7215-7234	Msa1409690:three_prime_UTR	50.0%
	TAACCACCGCTGGGTATTCA+AGG	+	tig0023536:7224-7243	None:intergenic	50.0%
	TGGCTTCACTAGCTGCCAAA+TGG	-	tig0023536:7361-7380	Msa1409690:CDS	50.0%
	GACAGACACTCCTCAATCCT+CGG	+	tig0023536:7584-7603	None:intergenic	50.0%
	TGAGTGGTCCTGAGTACTCA+AGG	-	tig0023536:7977-7996	Msa1409690:intron	50.0%
	TGGTCCTGAGTACTCAAGGA+AGG	-	tig0023536:7981-8000	Msa1409690:intron	50.0%
!!	TAGAAAACAGAGGCACCAGG+TGG	+	tig0023536:8111-8130	None:intergenic	50.0%
!!	CTGTAGAAAACAGAGGCACC+AGG	+	tig0023536:8114-8133	None:intergenic	50.0%
!	CTGGTGCCTCTGTTTTCTAC+AGG	-	tig0023536:8112-8131	Msa1409690:intron	50.0%
!	ATGAGTGCAGCCTCCTTTTC+TGG	+	tig0023536:8319-8338	None:intergenic	50.0%
	GGCTGCACTCATAGAGAACA+AGG	-	tig0023536:8327-8346	Msa1409690:CDS	50.0%
	GGCAGTTTCATCAGCAGTGT+TGG	-	tig0023536:8348-8367	Msa1409690:CDS	50.0%
!	CCCTGATCTTAAGCGCTGTT+TGG	-	tig0023536:8399-8418	Msa1409690:CDS	50.0%
	GCCAAACAGCGCTTAAGATC+AGG	+	tig0023536:8403-8422	None:intergenic	50.0%
	GCAGCACAAGAATGAGACCA+TGG	-	tig0023536:8516-8535	Msa1409690:CDS	50.0%
	GGAACGAAATAAACGCCGCC+TGG	-	tig0023536:7064-7083	Msa1409690:three_prime_UTR	55.0%
	GAACCTTGAATACCCAGCGG+TGG	-	tig0023536:7218-7237	Msa1409690:three_prime_UTR	55.0%
	TCATATTTCCTCGGTGGCGC+TGG	-	tig0023536:7264-7283	Msa1409690:three_prime_UTR	55.0%
	CATATTTCCTCGGTGGCGCT+GGG	-	tig0023536:7265-7284	Msa1409690:three_prime_UTR	55.0%
	ATATTTCCTCGGTGGCGCTG+GGG	-	tig0023536:7266-7285	Msa1409690:three_prime_UTR	55.0%
	GACACATGTCCTCTGATCCG+AGG	-	tig0023536:7564-7583	Msa1409690:intron	55.0%
	GTCCTCTGATCCGAGGATTG+AGG	-	tig0023536:7571-7590	Msa1409690:intron	55.0%
	CTCCTCAATCCTCGGATCAG+AGG	+	tig0023536:7576-7595	None:intergenic	55.0%
	GGAACGAAATAAACGCCGCC+TGG	-	tig0023536:7064-7083	Msa1409690:three_prime_UTR	55.0%
	GAACCTTGAATACCCAGCGG+TGG	-	tig0023536:7218-7237	Msa1409690:three_prime_UTR	55.0%
	TCATATTTCCTCGGTGGCGC+TGG	-	tig0023536:7264-7283	Msa1409690:three_prime_UTR	55.0%
	CATATTTCCTCGGTGGCGCT+GGG	-	tig0023536:7265-7284	Msa1409690:three_prime_UTR	55.0%
	ATATTTCCTCGGTGGCGCTG+GGG	-	tig0023536:7266-7285	Msa1409690:three_prime_UTR	55.0%
	GACACATGTCCTCTGATCCG+AGG	-	tig0023536:7564-7583	Msa1409690:intron	55.0%
	GTCCTCTGATCCGAGGATTG+AGG	-	tig0023536:7571-7590	Msa1409690:intron	55.0%
	CTCCTCAATCCTCGGATCAG+AGG	+	tig0023536:7576-7595	None:intergenic	55.0%
	AATAGGAAGCGGTCTGGCCC+AGG	+	tig0023536:7085-7104	None:intergenic	60.0%
	GTGGTTACCTCTCCGGTCAC+CGG	-	tig0023536:7237-7256	Msa1409690:three_prime_UTR	60.0%
!	TGATTTGCCGGTGACCGGAG+AGG	+	tig0023536:7247-7266	None:intergenic	60.0%
	GCACCCTCGTTCAACAACGC+AGG	+	tig0023536:8436-8455	None:intergenic	60.0%
	AATAGGAAGCGGTCTGGCCC+AGG	+	tig0023536:7085-7104	None:intergenic	60.0%
	GTGGTTACCTCTCCGGTCAC+CGG	-	tig0023536:7237-7256	Msa1409690:three_prime_UTR	60.0%
!	TGATTTGCCGGTGACCGGAG+AGG	+	tig0023536:7247-7266	None:intergenic	60.0%
	GCACCCTCGTTCAACAACGC+AGG	+	tig0023536:8436-8455	None:intergenic	60.0%
	CCGGAGAGGTAACCACCGCT+GGG	+	tig0023536:7233-7252	None:intergenic	65.0%
	CCCAGCGGTGGTTACCTCTC+CGG	-	tig0023536:7230-7249	Msa1409690:three_prime_UTR	65.0%
	ACCGGAGAGGTAACCACCGC+TGG	+	tig0023536:7234-7253	None:intergenic	65.0%
	CCGGAGAGGTAACCACCGCT+GGG	+	tig0023536:7233-7252	None:intergenic	65.0%
	CCCAGCGGTGGTTACCTCTC+CGG	-	tig0023536:7230-7249	Msa1409690:three_prime_UTR	65.0%
	ACCGGAGAGGTAACCACCGC+TGG	+	tig0023536:7234-7253	None:intergenic	65.0%
	AGGAAGCGGTCTGGCCCAGG+CGG	+	tig0023536:7082-7101	None:intergenic	70.0%
	AGGAAGCGGTCTGGCCCAGG+CGG	+	tig0023536:7082-7101	None:intergenic	70.0%
	CTCTCTCCCCAGCGCCACCG+AGG	+	tig0023536:7275-7294	None:intergenic	75.0%
!	CTCGGTGGCGCTGGGGAGAG+AGG	-	tig0023536:7273-7292	Msa1409690:exon	75.0%
	CTCTCTCCCCAGCGCCACCG+AGG	+	tig0023536:7275-7294	None:intergenic	75.0%
!	CTCGGTGGCGCTGGGGAGAG+AGG	-	tig0023536:7273-7292	Msa1409690:exon	75.0%

Chromosome	Type	Strat	End	Strand	Name
tig0023536	gene	7004	8758	7004	ID=Msa1409690;Name=Msa1409690
tig0023536	mRNA	7004	8758	7004	ID=Msa1409690-mRNA-1;Parent=Msa1409690;Name=Msa1409690-mRNA-1;_AED=0.17;_eAED=0.17;_QI=182\|1\|1\|1\|1\|1\|3\|284\|222
tig0023536	exon	7004	7473	7004	ID=Msa1409690-mRNA-1:exon:26179;Parent=Msa1409690-mRNA-1
tig0023536	exon	7604	7827	7604	ID=Msa1409690-mRNA-1:exon:26178;Parent=Msa1409690-mRNA-1
tig0023536	exon	8318	8758	8318	ID=Msa1409690-mRNA-1:exon:26177;Parent=Msa1409690-mRNA-1
tig0023536	five_prime_UTR	8577	8758	8577	ID=Msa1409690-mRNA-1:five_prime_utr;Parent=Msa1409690-mRNA-1
tig0023536	CDS	8318	8576	8318	ID=Msa1409690-mRNA-1:cds;Parent=Msa1409690-mRNA-1
tig0023536	CDS	7604	7827	7604	ID=Msa1409690-mRNA-1:cds;Parent=Msa1409690-mRNA-1
tig0023536	CDS	7288	7473	7288	ID=Msa1409690-mRNA-1:cds;Parent=Msa1409690-mRNA-1
tig0023536	three_prime_UTR	7004	7287	7004	ID=Msa1409690-mRNA-1:three_prime_utr;Parent=Msa1409690-mRNA-1

Gene Sequence

>Msa1409690

ATGGCTGCATCAATCACCGCAATCACTGTGGAGAACCTTGAATACCCAGCGGTGGTTACCTCTCCGGTCACCGGCAAATCATATTTCCTCGGTGGCGCTGGGGAGAGAGGATTGACCATTGAAGGAAACTTCATCAAGTTCACTGCCATAGGTGTTTATTTGGAAGATATAGCAGTGGCTTCACTAGCTGCCAAATGGAAGGGTAAATCATCTGAAGAGTTACTTGAGACCCTCGACTTTTACAGAGACATCATCTCAGGTCCCTTTGAAAAGTTAATTAGAGGGTCAAAGATTAGGGAATTGAGTGGTCCTGAGTACTCAAGGAAGGTTATGGAGAACTGTGTGGCACACTTGAAATCAGTTGGAACTTATGGAGATGCAGAAGCTGAAGCTATGCAAAAATTTGCTGAAGCTTTCAAGCCTGTTAATTTTCCACCTGGTGCCTCTGTTTTCTACAGGCAATCACCTGATGGAATATTAGGGCTTAGTTTCTCTCCGGATACAAGTATACCAGAAAAGGAGGCTGCACTCATAGAGAACAAGGCAGTTTCATCAGCAGTGTTGGAGACTATGATCGGCGAACACGCTGTTTCCCCTGATCTTAAGCGCTGTTTGGCTGCAAGATTACCTGCGTTGTTGAACGAGGGTGCTTTCAAGATTGGAAACTGA

Protein sequence

>Msa1409690

MAASITAITVENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGNFIKFTAIGVYLEDIAVASLAAKWKGKSSEELLETLDFYRDIISGPFEKLIRGSKIRELSGPEYSRKVMENCVAHLKSVGTYGDAEAEAMQKFAEAFKPVNFPPGASVFYRQSPDGILGLSFSPDTSIPEKEAALIENKAVSSAVLETMIGEHAVSPDLKRCLAARLPALLNEGAFKIGN*