AlfalfaGEDB | Msa0048430

M. sativa cultivar zhongmu-4 / Msa0048430

KEGG: -
GO: GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
PFAM: PF08513.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048430	XP_024631814.1	95.536	784	9	2	1	758	1	784	0.0	1545

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048430	sp\|O48847\|LUH_ARATH	70.670	791	195	12	1	758	1	787	0.0	1066

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048430	G7I7B3	95.293	786	9	3	1	758	1	786	0.0	1540

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TFs/TRs:

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Gene ID	Type	Classification
Msa0048430	TR	LUG

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016260	Msa0048430	0.986356	1.622149e-166	-8.615850e-47
Msa0029240	Msa0048430	0.807010	6.229170e-50	-8.615850e-47
Msa0048430	Msa0058300	0.806842	6.757798e-50	-8.615850e-47
Msa0048430	Msa0063530	0.818958	1.493618e-52	-8.615850e-47
Msa0048430	Msa0070700	0.809757	1.616343e-50	-8.615850e-47
Msa0048430	Msa0075960	0.897357	1.521173e-76	-8.615850e-47
Msa0048430	Msa0115080	0.807157	5.797474e-50	-8.615850e-47
Msa0048430	Msa0144370	0.800699	1.275309e-48	-8.615850e-47
Msa0048430	Msa0159340	0.901537	2.424209e-78	-8.615850e-47
Msa0048430	Msa0170200	0.803308	3.708816e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048430	MtrunA17_Chr1g0171711	95.293	786	9	3	1	758	1	786	0.0	1540
Msa0048430	MtrunA17_Chr7g0237271	62.500	784	260	10	2	758	8	784	0.0	953
Msa0048430	MtrunA17_Chr7g0237241	61.303	783	262	9	2	758	8	775	0.0	920
Msa0048430	MtrunA17_Chr3g0138311	54.988	431	173	6	339	758	477	897	1.35e-153	469
Msa0048430	MtrunA17_Chr3g0138311	76.136	88	21	0	1	88	1	88	4.45e-39	155
Msa0048430	MtrunA17_Chr1g0148791	55.963	436	163	8	339	758	480	902	5.15e-151	463
Msa0048430	MtrunA17_Chr1g0148791	40.421	428	136	20	1	340	1	397	6.06e-56	206
Msa0048430	MtrunA17_Chr2g0282401	52.410	332	148	5	433	758	461	788	1.71e-114	364
Msa0048430	MtrunA17_Chr4g0062881	45.783	415	186	6	347	758	79	457	6.20e-108	337
Msa0048430	MtrunA17_Chr4g0047051	43.066	274	153	3	487	758	36	308	3.98e-69	229

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048430	AT2G32700.6	70.849	789	195	11	1	758	1	785	0.0	1071
Msa0048430	AT2G32700.2	70.670	791	195	12	1	758	1	787	0.0	1066
Msa0048430	AT2G32700.5	70.670	791	195	12	1	758	1	787	0.0	1066
Msa0048430	AT2G32700.1	70.670	791	195	12	1	758	1	787	0.0	1066
Msa0048430	AT2G32700.4	70.670	791	195	12	1	758	1	787	0.0	1066
Msa0048430	AT2G32700.3	70.670	791	195	12	1	758	1	787	0.0	1066
Msa0048430	AT2G32700.7	69.012	810	195	13	1	758	1	806	0.0	1055
Msa0048430	AT4G32551.1	57.955	440	167	6	328	758	501	931	8.04e-169	511
Msa0048430	AT4G32551.1	77.273	88	20	0	1	88	1	88	8.13e-40	158
Msa0048430	AT4G32551.1	35.407	209	98	10	106	291	185	379	6.49e-14	76.3

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Find 213 sgRNAs with CRISPR-Local

Find 1038 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTATGGCGCAGAGTAAT+TGG	0.185140	1_2:-732491	Msa0048430:exon
AAACTCTAACCCTATGGATA+CGG	0.540176	1_2:-731778	Msa0048430:CDS
AAAGTTTGGTCACTTGCCTC+TGG	0.432801	1_2:-720000	Msa0048430:CDS
AACTATGGCGCAGAGTAATT+GGG	0.449762	1_2:-732490	Msa0048430:exon
AAGGTTTCTCCTGATCCAGT+AGG	0.649090	1_2:-732282	Msa0048430:intron
AAGTACCTCTAAATATGCTG+CGG	0.661658	1_2:+732067	None:intergenic
AAGTCTGGAATCACAAATGC+AGG	0.526168	1_2:-731332	Msa0048430:intron
AATCTCATTGTTATCATCAC+AGG	0.531071	1_2:+720462	None:intergenic
AATCTGTAGCATGCTCGGCA+GGG	0.649746	1_2:+726852	None:intergenic
AATGCAATCTACTTCATCTA+AGG	0.355132	1_2:-730663	Msa0048430:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGCTGAATTGAATTGAAT+TGG	+	chr1_2:719386-719405	None:intergenic	30.0%
TTGAACTGAAAACGAAACTA+TGG	-	chr1_2:719455-719474	Msa0048430:intron	30.0%
CTAAGTCATTTATGACAGAA+GGG	-	chr1_2:719655-719674	Msa0048430:intron	30.0%
TTGAAATCAACAAATCATCC+TGG	-	chr1_2:720246-720265	Msa0048430:CDS	30.0%
TGAAATCAACAAATCATCCT+GGG	-	chr1_2:720247-720266	Msa0048430:CDS	30.0%
TAATTCTCTTCTCCTATATC+AGG	-	chr1_2:720900-720919	Msa0048430:intron	30.0%
TCCTATATCAGGATTAAATC+AGG	-	chr1_2:720911-720930	Msa0048430:intron	30.0%
CCTATATCAGGATTAAATCA+GGG	-	chr1_2:720912-720931	Msa0048430:intron	30.0%
AGAACAAAACTCACAGTTAA+AGG	+	chr1_2:720966-720985	None:intergenic	30.0%
AACCATCAATATATCTGATC+TGG	-	chr1_2:721009-721028	Msa0048430:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	719086	732896	719086	ID=Msa0048430;Name=Msa0048430
chr1_2	mRNA	719086	732896	719086	ID=Msa0048430-mRNA-1;Parent=Msa0048430;Name=Msa0048430-mRNA-1;_AED=0.11;_eAED=0.11;_QI=312\|0.87\|0.94\|1\|0.93\|0.88\|17\|202\|758
chr1_2	exon	719086	719431	719086	ID=Msa0048430-mRNA-1:exon:151;Parent=Msa0048430-mRNA-1
chr1_2	exon	719903	720100	719903	ID=Msa0048430-mRNA-1:exon:150;Parent=Msa0048430-mRNA-1
chr1_2	exon	720215	720331	720215	ID=Msa0048430-mRNA-1:exon:149;Parent=Msa0048430-mRNA-1
chr1_2	exon	720417	720572	720417	ID=Msa0048430-mRNA-1:exon:148;Parent=Msa0048430-mRNA-1
chr1_2	exon	723423	723572	723423	ID=Msa0048430-mRNA-1:exon:147;Parent=Msa0048430-mRNA-1
chr1_2	exon	726666	726775	726666	ID=Msa0048430-mRNA-1:exon:146;Parent=Msa0048430-mRNA-1
chr1_2	exon	726843	726984	726843	ID=Msa0048430-mRNA-1:exon:145;Parent=Msa0048430-mRNA-1
chr1_2	exon	727548	727775	727548	ID=Msa0048430-mRNA-1:exon:144;Parent=Msa0048430-mRNA-1
chr1_2	exon	730664	730936	730664	ID=Msa0048430-mRNA-1:exon:143;Parent=Msa0048430-mRNA-1
chr1_2	exon	731011	731060	731011	ID=Msa0048430-mRNA-1:exon:142;Parent=Msa0048430-mRNA-1
chr1_2	exon	731333	731441	731333	ID=Msa0048430-mRNA-1:exon:141;Parent=Msa0048430-mRNA-1
chr1_2	exon	731551	731626	731551	ID=Msa0048430-mRNA-1:exon:140;Parent=Msa0048430-mRNA-1
chr1_2	exon	731714	731997	731714	ID=Msa0048430-mRNA-1:exon:139;Parent=Msa0048430-mRNA-1
chr1_2	exon	732073	732182	732073	ID=Msa0048430-mRNA-1:exon:138;Parent=Msa0048430-mRNA-1
chr1_2	exon	732283	732380	732283	ID=Msa0048430-mRNA-1:exon:137;Parent=Msa0048430-mRNA-1
chr1_2	exon	732477	732545	732477	ID=Msa0048430-mRNA-1:exon:136;Parent=Msa0048430-mRNA-1
chr1_2	exon	732622	732896	732622	ID=Msa0048430-mRNA-1:exon:135;Parent=Msa0048430-mRNA-1
chr1_2	five_prime_UTR	732622	732896	732622	ID=Msa0048430-mRNA-1:five_prime_utr;Parent=Msa0048430-mRNA-1
chr1_2	five_prime_UTR	732509	732545	732509	ID=Msa0048430-mRNA-1:five_prime_utr;Parent=Msa0048430-mRNA-1
chr1_2	CDS	732477	732508	732477	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	732283	732380	732283	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	732073	732182	732073	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	731714	731997	731714	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	731551	731626	731551	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	731333	731441	731333	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	731011	731060	731011	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	730664	730936	730664	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	727548	727775	727548	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	726843	726984	726843	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	726666	726775	726666	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	723423	723572	723423	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	720417	720572	720417	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	720215	720331	720215	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	719903	720100	719903	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	CDS	719288	719431	719288	ID=Msa0048430-mRNA-1:cds;Parent=Msa0048430-mRNA-1
chr1_2	three_prime_UTR	719086	719287	719086	ID=Msa0048430-mRNA-1:three_prime_utr;Parent=Msa0048430-mRNA-1

Gene Sequence

>Msa0048430

ATGGCGCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTTTACATATATGATTATTTGGTTAAGAAAAAGTTGCACAATACTGCTAAGTCATTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGTGGTTTTCTTTTCGAGTGGTGGTCTGTTTTCTGGGACATTTTTATCGCGAGGACAAATGAGAAACATTCTGATAATGCCGCAGCATATTTAGAGGCTCAACAGCTTAAAGCGAAAGAACAACAATTGCAAATGCAACAGTTGCAATTAATGCGCCAAGCTCAGATGCAAAGAAGGGATCCTAATCATCCTCCCATTGGAACTCCTCCTCTAAATGCTATCACTACAGAAGGAATGCTAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAAAACTCTAACCCTATGGATACGGAGACATCATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCTGGTCAGATGGTTCAAGGAAATTCAGTAAGTGTGACAGCAGCTTTGCAGCAAATGCAGGCTCGAACTCAGCAAACCCCTGATATCAAAAGCGAAGTCAACATGGGAAACATGCAGAGATCCTTACCTGTGGATCCTTCAATTTATGGGCAGGGAGGATTGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGAGTTGGTGGTCTCACATTGAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGCCCAGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAAAGTGCAAATCAGTTTCAGCTTTTGCCACAACAACAACAACAACAGCTCCTTGCTCAGGTACATGCACAAGGAAATATTGGCAATTCACAAGTGTATGGAGATATGGATCCTCAACGATTAAGAGGATTAGCTAGAGGAGGTTTGAATGTGAAAGACAGTCAACCAATTGCAAACGATGGGTCAATAGGTTCTCCAATGCAATCTACTTCATCTAAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAATAGTACTGGTACAGGAAATACACTTGGCCCTTCTAATTCTCAACCGTCAACTCCATCTATTCATACTCCTGGTGATGGAGTTGCTATGGCGGGCAACTTGCAGAATGTTGCTGGTGTATCCAAGGGTTTGATGATTTATGGTACTGAAGGAGCAGGCGGTCTTGCATCTTCCACAAACCAGCTGGATGGCTTGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGAAAGGACTTATTTGGGACGTTGAAACGGAACCCTGCCGAGCATGCTACAGATTCTTCAAAAGGCTTTTCCTTCAGTGAAGTTAGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCTTCAGATGGGAAATTATTAGCCAGTGCTGGACATGACAAGAAGGTTGTTCTTTGGAACATGGAGACACTGAAAACGCAGAGCACGCCAGAGGAACACACTGTTATTATTACTGACGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCGTTTGATACAACTGTGCGGCTTTGGGATGCTGCTGATCCAAGCCTTTCTTTGCAGGCATATAGCGGTCATACTTCACATGTTGCATCCCTTGATTTCCACCCTAAGAAAAATGACCTTTTCTGTTCCTGTGATGATAACAATGAGATTCGCTTCTGGAATATTAGTCAATATTCTTGTACTCGTGTTTTTAAGGGAGGATCTACACAGGTGAGGTTTCAGCCAAGGAGTGGACACCTTCTGGCCGCAGCATCTGGCAATGTTGTGTCTCTCTTTGATGTTGAGACTGACAGGCAAATGCACTCATTACAGGGACACTCTGGGGAGGTACATTGTGTATGCTGGGATACAAATGGAGATTATTTGGCATCTGTGAGTCAAGAATCTGTCAAAGTTTGGTCACTTGCCTCTGGTGATTGCATTCATGAACTTAATTCCAGTGGAAACATGTTTCATTCTTGTGTTTTTCACCCAAGTTACTCCAACCTCTTGGTTATCGGAGGATACCAGTCATTGGAGCTATGGCACATGGCCGAAAACAAATGTATGACCATACCAGCTCATGAGGGTGTAATATCAGCCCTAGCACAATCACCAGTGACAGGGATGGTTGCTTCTGCCAGTCATGATAAGTCGGTAAAGATATGGAAATAA

Protein sequence

>Msa0048430

MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDNAAAYLEAQQLKAKEQQLQMQQLQLMRQAQMQRRDPNHPPIGTPPLNAITTEGMLGQSTATALAAKMYEDRMKNSNPMDTETSSQPLLDARMALLKSTNHPGQMVQGNSVSVTAALQQMQARTQQTPDIKSEVNMGNMQRSLPVDPSIYGQGGLQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQVHAQGNIGNSQVYGDMDPQRLRGLARGGLNVKDSQPIANDGSIGSPMQSTSSKNNRKRKGPTSSGAANSTGTGNTLGPSNSQPSTPSIHTPGDGVAMAGNLQNVAGVSKGLMIYGTEGAGGLASSTNQLDGLEHFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPAEHATDSSKGFSFSEVSSIRKSNGKVVCCHFSSDGKLLASAGHDKKVVLWNMETLKTQSTPEEHTVIITDVRFRPNSTQLATSSFDTTVRLWDAADPSLSLQAYSGHTSHVASLDFHPKKNDLFCSCDDNNEIRFWNISQYSCTRVFKGGSTQVRFQPRSGHLLAAASGNVVSLFDVETDRQMHSLQGHSGEVHCVCWDTNGDYLASVSQESVKVWSLASGDCIHELNSSGNMFHSCVFHPSYSNLLVIGGYQSLELWHMAENKCMTIPAHEGVISALAQSPVTGMVASASHDKSVKIWK*