Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115080 | sp|Q8GUU3|CPS3B_ARATH | 70.787 | 534 | 134 | 4 | 55 | 584 | 1 | 516 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115080 | A0A072VR63 | 93.258 | 534 | 32 | 1 | 55 | 584 | 1 | 534 | 0.0 | 1044 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012080 | Msa0115080 | 0.811907 | 5.535880e-51 | -8.615850e-47 |
| Msa0017510 | Msa0115080 | 0.800101 | 1.687927e-48 | -8.615850e-47 |
| Msa0021510 | Msa0115080 | 0.818431 | 1.967508e-52 | -8.615850e-47 |
| Msa0026710 | Msa0115080 | 0.805275 | 1.444270e-49 | -8.615850e-47 |
| Msa0026800 | Msa0115080 | 0.804903 | 1.727447e-49 | -8.615850e-47 |
| Msa0029270 | Msa0115080 | 0.842403 | 2.642055e-58 | -8.615850e-47 |
| Msa0032090 | Msa0115080 | 0.842951 | 1.889077e-58 | -8.615850e-47 |
| Msa0032430 | Msa0115080 | 0.875996 | 1.982482e-68 | -8.615850e-47 |
| Msa0036870 | Msa0115080 | 0.807129 | 5.876326e-50 | -8.615850e-47 |
| Msa0047030 | Msa0115080 | 0.804770 | 1.841958e-49 | -8.615850e-47 |
| Msa0048430 | Msa0115080 | 0.807157 | 5.797474e-50 | -8.615850e-47 |
| Msa0052260 | Msa0115080 | 0.812119 | 4.977021e-51 | -8.615850e-47 |
| Msa0054480 | Msa0115080 | 0.839206 | 1.820292e-57 | -8.615850e-47 |
| Msa0061290 | Msa0115080 | 0.976369 | 1.077611e-141 | -8.615850e-47 |
| Msa0070700 | Msa0115080 | 0.829008 | 6.544376e-55 | -8.615850e-47 |
| Msa0075220 | Msa0115080 | 0.808416 | 3.131335e-50 | -8.615850e-47 |
| Msa0079380 | Msa0115080 | 0.863608 | 2.204694e-64 | -8.615850e-47 |
| Msa0081090 | Msa0115080 | 0.816070 | 6.684944e-52 | -8.615850e-47 |
| Msa0089630 | Msa0115080 | 0.819942 | 8.912234e-53 | -8.615850e-47 |
| Msa0090400 | Msa0115080 | 0.807485 | 4.939633e-50 | -8.615850e-47 |
| Msa0115080 | Msa0118590 | 0.810494 | 1.121133e-50 | -8.615850e-47 |
| Msa0115080 | Msa0124060 | 0.824523 | 7.709377e-54 | -8.615850e-47 |
| Msa0115080 | Msa0127050 | 0.842797 | 2.076286e-58 | -8.615850e-47 |
| Msa0115080 | Msa0137880 | 0.812075 | 5.087412e-51 | -8.615850e-47 |
| Msa0115080 | Msa0139060 | 0.800478 | 1.414732e-48 | -8.615850e-47 |
| Msa0115080 | Msa0144370 | 0.825954 | 3.537289e-54 | -8.615850e-47 |
| Msa0115080 | Msa0152350 | 0.980226 | 9.863630e-150 | -8.615850e-47 |
| Msa0115080 | Msa0167520 | 0.814500 | 1.492471e-51 | -8.615850e-47 |
| Msa0115080 | Msa0168500 | 0.809719 | 1.646635e-50 | -8.615850e-47 |
| Msa0115080 | Msa0169310 | 0.836437 | 9.361890e-57 | -8.615850e-47 |
| Msa0115080 | Msa0172070 | 0.871438 | 6.834924e-67 | -8.615850e-47 |
| Msa0115080 | Msa0175780 | 0.800059 | 1.721499e-48 | -8.615850e-47 |
| Msa0115080 | Msa0178560 | 0.803430 | 3.499612e-49 | -8.615850e-47 |
| Msa0115080 | Msa0178610 | 0.821576 | 3.751125e-53 | -8.615850e-47 |
| Msa0115080 | Msa0178660 | 0.819511 | 1.117628e-52 | -8.615850e-47 |
| Msa0115080 | Msa0189010 | 0.832554 | 8.845744e-56 | -8.615850e-47 |
| Msa0115080 | Msa0196500 | -0.801673 | 8.057294e-49 | -8.615850e-47 |
| Msa0115080 | Msa0225760 | 0.800407 | 1.462534e-48 | -8.615850e-47 |
| Msa0115080 | Msa0229230 | 0.803166 | 3.969130e-49 | -8.615850e-47 |
| Msa0115080 | Msa0250000 | 0.827590 | 1.438199e-54 | -8.615850e-47 |
| Msa0115080 | Msa0260610 | 0.802978 | 4.340656e-49 | -8.615850e-47 |
| Msa0115080 | Msa0292400 | 0.807621 | 4.622103e-50 | -8.615850e-47 |
| Msa0115080 | Msa0299870 | 0.809041 | 2.302175e-50 | -8.615850e-47 |
| Msa0115080 | Msa0335730 | 0.814285 | 1.665756e-51 | -8.615850e-47 |
| Msa0115080 | Msa0344040 | 0.820407 | 6.973690e-53 | -8.615850e-47 |
| Msa0115080 | Msa0379770 | 0.815881 | 7.366594e-52 | -8.615850e-47 |
| Msa0115080 | Msa0386090 | 0.829193 | 5.901868e-55 | -8.615850e-47 |
| Msa0115080 | Msa0402650 | 0.805161 | 1.525407e-49 | -8.615850e-47 |
| Msa0115080 | Msa0428080 | 0.811748 | 5.993520e-51 | -8.615850e-47 |
| Msa0115080 | Msa0428150 | 0.807777 | 4.283316e-50 | -8.615850e-47 |
| Msa0115080 | Msa0449210 | 0.807593 | 4.686408e-50 | -8.615850e-47 |
| Msa0115080 | Msa0453210 | 0.816468 | 5.444549e-52 | -8.615850e-47 |
| Msa0115080 | Msa0462500 | 0.804428 | 2.170804e-49 | -8.615850e-47 |
| Msa0115080 | Msa0464680 | 0.819355 | 1.213180e-52 | -8.615850e-47 |
| Msa0115080 | Msa0465410 | 0.844215 | 8.679754e-59 | -8.615850e-47 |
| Msa0115080 | Msa0467490 | 0.827727 | 1.333474e-54 | -8.615850e-47 |
| Msa0115080 | Msa0472550 | 0.821868 | 3.211664e-53 | -8.615850e-47 |
| Msa0115080 | Msa0472620 | 0.816812 | 4.558908e-52 | -8.615850e-47 |
| Msa0115080 | Msa0474520 | 0.821082 | 4.877058e-53 | -8.615850e-47 |
| Msa0115080 | Msa0487800 | 0.825814 | 3.816881e-54 | -8.615850e-47 |
| Msa0115080 | Msa0511270 | 0.851910 | 6.522574e-61 | -8.615850e-47 |
| Msa0115080 | Msa0511370 | 0.843872 | 1.072774e-58 | -8.615850e-47 |
| Msa0115080 | Msa0529890 | 0.833357 | 5.587028e-56 | -8.615850e-47 |
| Msa0115080 | Msa0531180 | 0.813872 | 2.054393e-51 | -8.615850e-47 |
| Msa0115080 | Msa0532070 | 0.820242 | 7.606094e-53 | -8.615850e-47 |
| Msa0115080 | Msa0547900 | 0.843691 | 1.199289e-58 | -8.615850e-47 |
| Msa0115080 | Msa0548170 | 0.820414 | 6.946180e-53 | -8.615850e-47 |
| Msa0115080 | Msa0569200 | 0.845715 | 3.415776e-59 | -8.615850e-47 |
| Msa0115080 | Msa0585560 | 0.822311 | 2.535459e-53 | -8.615850e-47 |
| Msa0115080 | Msa0602880 | 0.838225 | 3.262470e-57 | -8.615850e-47 |
| Msa0115080 | Msa0615710 | 0.806304 | 8.777093e-50 | -8.615850e-47 |
| Msa0115080 | Msa0625720 | 0.833484 | 5.193462e-56 | -8.615850e-47 |
| Msa0115080 | Msa0635550 | 0.820209 | 7.738771e-53 | -8.615850e-47 |
| Msa0115080 | Msa0639430 | 0.806266 | 8.942168e-50 | -8.615850e-47 |
| Msa0115080 | Msa0643940 | 0.827347 | 1.645225e-54 | -8.615850e-47 |
| Msa0115080 | Msa0650020 | 0.819078 | 1.402504e-52 | -8.615850e-47 |
| Msa0115080 | Msa0661650 | 0.852283 | 5.111649e-61 | -8.615850e-47 |
| Msa0115080 | Msa0663390 | 0.808780 | 2.617849e-50 | -8.615850e-47 |
| Msa0115080 | Msa0681250 | 0.824694 | 7.024093e-54 | -8.615850e-47 |
| Msa0115080 | Msa0681270 | 0.833501 | 5.144838e-56 | -8.615850e-47 |
| Msa0115080 | Msa0683470 | 0.805310 | 1.419999e-49 | -8.615850e-47 |
| Msa0115080 | Msa0691980 | 0.846077 | 2.723557e-59 | -8.615850e-47 |
| Msa0115080 | Msa0698920 | 0.809600 | 1.746566e-50 | -8.615850e-47 |
| Msa0115080 | Msa0715700 | 0.818666 | 1.740117e-52 | -8.615850e-47 |
| Msa0115080 | Msa0716830 | 0.836526 | 8.884620e-57 | -8.615850e-47 |
| Msa0115080 | Msa0765910 | 0.818159 | 2.266675e-52 | -8.615850e-47 |
| Msa0115080 | Msa0789980 | 0.818242 | 2.171600e-52 | -8.615850e-47 |
| Msa0115080 | Msa0793800 | 0.821856 | 3.232208e-53 | -8.615850e-47 |
| Msa0115080 | Msa0892120 | 0.839054 | 1.993319e-57 | -8.615850e-47 |
| Msa0115080 | Msa0938220 | 0.813094 | 3.045576e-51 | -8.615850e-47 |
| Msa0115080 | Msa0945110 | 0.809595 | 1.750559e-50 | -8.615850e-47 |
| Msa0115080 | Msa0968850 | 0.801229 | 9.937315e-49 | -8.615850e-47 |
| Msa0115080 | Msa0979730 | 0.804622 | 1.977753e-49 | -8.615850e-47 |
| Msa0115080 | Msa1014540 | 0.813211 | 2.870374e-51 | -8.615850e-47 |
| Msa0115080 | Msa1029490 | 0.824829 | 6.529378e-54 | -8.615850e-47 |
| Msa0115080 | Msa1030800 | 0.846524 | 2.057405e-59 | -8.615850e-47 |
| Msa0115080 | Msa1045140 | 0.806724 | 7.159111e-50 | -8.615850e-47 |
| Msa0115080 | Msa1075650 | 0.840625 | 7.770176e-58 | -8.615850e-47 |
| Msa0115080 | Msa1082810 | 0.830336 | 3.110719e-55 | -8.615850e-47 |
| Msa0115080 | Msa1084960 | 0.814129 | 1.803086e-51 | -8.615850e-47 |
| Msa0115080 | Msa1100050 | 0.802070 | 6.678929e-49 | -8.615850e-47 |
| Msa0115080 | Msa1117170 | 0.801176 | 1.018535e-48 | -8.615850e-47 |
| Msa0115080 | Msa1119940 | 0.861728 | 8.365199e-64 | -8.615850e-47 |
| Msa0115080 | Msa1162270 | 0.834477 | 2.930774e-56 | -8.615850e-47 |
| Msa0115080 | Msa1170670 | 0.842425 | 2.606588e-58 | -8.615850e-47 |
| Msa0115080 | Msa1171710 | 0.859990 | 2.820815e-63 | -8.615850e-47 |
| Msa0115080 | Msa1175440 | 0.822665 | 2.098033e-53 | -8.615850e-47 |
| Msa0115080 | Msa1181910 | 0.819869 | 9.257420e-53 | -8.615850e-47 |
| Msa0115080 | Msa1209460 | 0.816196 | 6.264899e-52 | -8.615850e-47 |
| Msa0115080 | Msa1220280 | 0.820747 | 5.824399e-53 | -8.615850e-47 |
| Msa0115080 | Msa1220380 | 0.819851 | 9.349460e-53 | -8.615850e-47 |
| Msa0115080 | Msa1222850 | 0.857887 | 1.201125e-62 | -8.615850e-47 |
| Msa0115080 | Msa1225700 | 0.800864 | 1.179820e-48 | -8.615850e-47 |
| Msa0115080 | Msa1242670 | 0.805925 | 1.054724e-49 | -8.615850e-47 |
| Msa0115080 | Msa1260320 | 0.803930 | 2.756160e-49 | -8.615850e-47 |
| Msa0115080 | Msa1263750 | 0.844732 | 6.299812e-59 | -8.615850e-47 |
| Msa0115080 | Msa1263790 | 0.841665 | 4.140972e-58 | -8.615850e-47 |
| Msa0115080 | Msa1264190 | 0.811280 | 7.574410e-51 | -8.615850e-47 |
| Msa0115080 | Msa1265890 | 0.826301 | 2.924531e-54 | -8.615850e-47 |
| Msa0115080 | Msa1287460 | 0.804948 | 1.690912e-49 | -8.615850e-47 |
| Msa0115080 | Msa1297230 | 0.810805 | 9.601344e-51 | -8.615850e-47 |
| Msa0115080 | Msa1298820 | 0.831044 | 2.086471e-55 | -8.615850e-47 |
| Msa0115080 | Msa1302830 | 0.847606 | 1.039844e-59 | -8.615850e-47 |
| Msa0115080 | Msa1303480 | 0.804303 | 2.304580e-49 | -8.615850e-47 |
| Msa0115080 | Msa1314630 | 0.838235 | 3.244242e-57 | -8.615850e-47 |
| Msa0115080 | Msa1330410 | 0.870251 | 1.680147e-66 | -8.615850e-47 |
| Msa0115080 | Msa1333080 | 0.837834 | 4.114391e-57 | -8.615850e-47 |
| Msa0115080 | Msa1370010 | 0.838958 | 2.110430e-57 | -8.615850e-47 |
| Msa0115080 | Msa1370720 | 0.819014 | 1.450315e-52 | -8.615850e-47 |
| Msa0115080 | Msa1372230 | 0.821878 | 3.195259e-53 | -8.615850e-47 |
| Msa0115080 | Msa1381610 | 0.811335 | 7.372176e-51 | -8.615850e-47 |
| Msa0115080 | Msa1390440 | 0.808181 | 3.513608e-50 | -8.615850e-47 |
| Msa0115080 | Msa1391770 | 0.817970 | 2.501263e-52 | -8.615850e-47 |
| Msa0115080 | Msa1392240 | 0.846026 | 2.812258e-59 | -8.615850e-47 |
| Msa0115080 | Msa1392780 | 0.809978 | 1.448395e-50 | -8.615850e-47 |
| Msa0115080 | Msa1405930 | 0.837113 | 6.294801e-57 | -8.615850e-47 |
| Msa0115080 | Msa1419370 | 0.803247 | 3.818411e-49 | -8.615850e-47 |
| Msa0115080 | Msa1429150 | 0.800724 | 1.260321e-48 | -8.615850e-47 |
| Msa0115080 | Msa1437900 | 0.804247 | 2.367394e-49 | -8.615850e-47 |
| Msa0115080 | Msa1440560 | 0.824176 | 9.301221e-54 | -8.615850e-47 |
| Msa0115080 | Msa1442210 | 0.812298 | 4.549754e-51 | -8.615850e-47 |
| Msa0115080 | Msa1443760 | 0.827536 | 1.482095e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115080 | MtrunA17_Chr1g0161361 | 93.258 | 534 | 32 | 1 | 55 | 584 | 1 | 534 | 0.0 | 1044 |
| Msa0115080 | MtrunA17_Chr2g0277401 | 36.574 | 432 | 247 | 10 | 62 | 481 | 27 | 443 | 5.29e-84 | 276 |
| Msa0115080 | MtrunA17_Chr1g0171271 | 27.933 | 358 | 239 | 10 | 74 | 419 | 22 | 372 | 7.99e-33 | 134 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0115080 | AT2G01730.1 | 70.787 | 534 | 134 | 4 | 55 | 584 | 1 | 516 | 0.0 | 788 |
| Msa0115080 | AT2G01730.2 | 71.398 | 465 | 111 | 4 | 124 | 584 | 1 | 447 | 0.0 | 685 |
| Msa0115080 | AT1G61010.3 | 34.739 | 498 | 296 | 12 | 62 | 548 | 27 | 506 | 8.87e-88 | 286 |
| Msa0115080 | AT1G61010.1 | 34.739 | 498 | 296 | 12 | 62 | 548 | 27 | 506 | 8.87e-88 | 286 |
| Msa0115080 | AT1G61010.2 | 34.739 | 498 | 296 | 12 | 62 | 548 | 27 | 506 | 8.87e-88 | 286 |
| Msa0115080 | AT1G61010.5 | 34.739 | 498 | 296 | 12 | 62 | 548 | 27 | 506 | 8.87e-88 | 286 |
| Msa0115080 | AT1G61010.4 | 34.739 | 498 | 296 | 12 | 62 | 548 | 27 | 506 | 8.87e-88 | 286 |
| Msa0115080 | AT5G23880.1 | 28.691 | 359 | 236 | 10 | 74 | 419 | 22 | 373 | 2.30e-37 | 148 |
Find 124 sgRNAs with CRISPR-Local
Find 676 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATAAATTGTTAAGGTTAT+TGG | 0.150822 | 1_3:-33660991 | Msa0115080:intron |
| TAGGTTCATAAATGTGTTTC+TGG | 0.191107 | 1_3:-33658383 | Msa0115080:CDS |
| TGTGTTCTCTTTGCCACTCC+TGG | 0.217465 | 1_3:-33655901 | Msa0115080:CDS |
| AGTATGTGTCTTTAATCTTC+TGG | 0.243543 | 1_3:+33657045 | None:intergenic |
| CATTTCTGAAACTTGAAGTT+TGG | 0.247182 | 1_3:+33653745 | None:intergenic |
| GAGGGAAACAGTTAACATTT+TGG | 0.248514 | 1_3:-33653439 | Msa0115080:three_prime_UTR |
| GTATTATTTAGATATTTAAT+TGG | 0.249871 | 1_3:-33653006 | Msa0115080:three_prime_UTR |
| TTAGTTTACATATTGGTAAA+TGG | 0.280134 | 1_3:-33653542 | Msa0115080:exon |
| AAACTATGTGCTCATAATTT+AGG | 0.286277 | 1_3:-33653104 | Msa0115080:three_prime_UTR |
| ACGTATCACAAGATGCTTAT+AGG | 0.287478 | 1_3:-33657077 | Msa0115080:CDS |
| CTTTGATGTTGGAAGACTTT+CGG | 0.307404 | 1_3:-33662724 | Msa0115080:CDS |
| GAAAGGAAATTATGTTATAT+TGG | 0.311710 | 1_3:-33653059 | Msa0115080:three_prime_UTR |
| TATTATTTAGATATTTAATT+GGG | 0.315627 | 1_3:-33653005 | Msa0115080:three_prime_UTR |
| CACTGACTCTAAAGGGATAA+TGG | 0.318276 | 1_3:-33653968 | Msa0115080:CDS |
| GGAGAATAATAATAATAAAA+AGG | 0.321558 | 1_3:-33653623 | Msa0115080:CDS |
| GTAAATCAAGAATTATTTAT+AGG | 0.333298 | 1_3:-33652982 | Msa0115080:three_prime_UTR |
| TCATCTTCAACTTGAAGTTC+AGG | 0.337544 | 1_3:+33653673 | None:intergenic |
| TTCATATTCACAGTTTGCTT+TGG | 0.338382 | 1_3:+33653338 | None:intergenic |
| GGCTCTTGTGTTTATGATGC+TGG | 0.344795 | 1_3:-33653083 | Msa0115080:three_prime_UTR |
| GCCACTCCTGGGATGATACT+TGG | 0.350356 | 1_3:-33655889 | Msa0115080:CDS |
| CATTGTAGAGCTCTGAGTTA+TGG | 0.362361 | 1_3:-33653292 | Msa0115080:three_prime_UTR |
| TGCACTAGCATAACATGCTT+TGG | 0.366224 | 1_3:+33653925 | None:intergenic |
| GCACTAGCATAACATGCTTT+GGG | 0.369001 | 1_3:+33653926 | None:intergenic |
| CTTACAATTTCGTTGTTTGC+AGG | 0.379227 | 1_3:+33653832 | None:intergenic |
| AAGAGCAGCAGATGGAGTTT+TGG | 0.382873 | 1_3:-33653650 | Msa0115080:CDS |
| GAAAGTGTTGGTTGATCGTC+GGG | 0.383630 | 1_3:-33662702 | Msa0115080:CDS |
| TTCTTACATTCAAAGCTTTG+TGG | 0.383654 | 1_3:-33653473 | Msa0115080:three_prime_UTR |
| TGCAATGTTCTATGTAAAAG+TGG | 0.387426 | 1_3:-33660965 | Msa0115080:CDS |
| GTTCCTATCTACTTCTCATC+AGG | 0.393377 | 1_3:-33657593 | Msa0115080:intron |
| ACGGGGTTTAGTTTACATAT+TGG | 0.398909 | 1_3:-33653549 | Msa0115080:exon |
| CCTTACTTCACTGAAGTTTG+TGG | 0.411080 | 1_3:-33664001 | Msa0115080:CDS |
| TAGAGAAGAAAACGCAGGTT+TGG | 0.415918 | 1_3:-33664516 | Msa0115080:CDS |
| GCCGCTCCTAGGTGTCTATC+TGG | 0.418382 | 1_3:+33660901 | None:intergenic |
| CTTACTTCACTGAAGTTTGT+GGG | 0.419379 | 1_3:-33664000 | Msa0115080:CDS |
| CTTATTCCAACATTTGCTCT+TGG | 0.425564 | 1_3:-33658347 | Msa0115080:CDS |
| AATGGTTGCACAGCACTTGC+AGG | 0.425789 | 1_3:+33664436 | None:intergenic |
| CGCACATCTATCTGAGTATC+GGG | 0.431971 | 1_3:+33655019 | None:intergenic |
| TAACAGATTCTCATTCCATC+TGG | 0.433595 | 1_3:+33653251 | None:intergenic |
| GTGTTCTCTTTGCCACTCCT+GGG | 0.435665 | 1_3:-33655900 | Msa0115080:CDS |
| CTTCTTACTCAGTTATAAGA+AGG | 0.438009 | 1_3:+33660854 | None:intergenic |
| TGAAAATACATACGGCTTTG+AGG | 0.440006 | 1_3:+33659979 | None:intergenic |
| GTCCTCACACTGACTCTAAA+GGG | 0.442382 | 1_3:-33653975 | Msa0115080:CDS |
| AATTTCGTTGTTTGCAGGAT+GGG | 0.443574 | 1_3:+33653837 | None:intergenic |
| ACGTATCGTAGTTGCATAAG+TGG | 0.451707 | 1_3:+33660031 | None:intergenic |
| AAACCTGATGAGAAGTAGAT+AGG | 0.452202 | 1_3:+33657590 | None:intergenic |
| ATAGAATTGATTCTGAATTG+AGG | 0.461931 | 1_3:-33653870 | Msa0115080:CDS |
| AGTCCTCACACTGACTCTAA+AGG | 0.462808 | 1_3:-33653976 | Msa0115080:CDS |
| TTGATGTTGGTGCAGTCACT+TGG | 0.464421 | 1_3:-33664041 | Msa0115080:intron |
| TAACTGTTTCCCTCGAGATC+AGG | 0.465353 | 1_3:+33653448 | None:intergenic |
| GATTGCCATTGATGATGTAA+TGG | 0.465807 | 1_3:+33664418 | None:intergenic |
| CATAATATGCACGTATCTGC+AGG | 0.468751 | 1_3:+33662119 | None:intergenic |
| AGTTTGCTTTGGTTGTACTT+TGG | 0.471698 | 1_3:+33653349 | None:intergenic |
| CTGGGAGCGCATGAATTTGA+AGG | 0.471772 | 1_3:-33657615 | Msa0115080:CDS |
| CATAAATGTGTTTCTGGAGG+AGG | 0.473029 | 1_3:-33658377 | Msa0115080:CDS |
| GGGATCTGTATCAACTTTGG+TGG | 0.484392 | 1_3:+33655039 | None:intergenic |
| AGCTTTGTCTCCTTTGATGT+TGG | 0.487734 | 1_3:-33662735 | Msa0115080:CDS |
| GCAGGTGCTGGTCAAGAAGT+TGG | 0.488494 | 1_3:-33664295 | Msa0115080:intron |
| AAAAGTGGGAGACGCAGAAA+TGG | 0.495259 | 1_3:-33660950 | Msa0115080:CDS |
| GACGCAGAAATGGTTTATAC+AGG | 0.495611 | 1_3:-33660940 | Msa0115080:CDS |
| AGGTCTATGTTAGATGCTCC+TGG | 0.498744 | 1_3:-33655928 | Msa0115080:CDS |
| GGAAAGTGTTGGTTGATCGT+CGG | 0.500379 | 1_3:-33662703 | Msa0115080:CDS |
| TTATTGACAGATTCATCAGT+TGG | 0.504762 | 1_3:-33654004 | Msa0115080:intron |
| TATTGTATGGCTGGAACTGT+AGG | 0.504776 | 1_3:-33655085 | Msa0115080:CDS |
| CACAGTCTGCTTCAAATCTA+CGG | 0.509906 | 1_3:+33662156 | None:intergenic |
| CAATTTCGTTGTTTGCAGGA+TGG | 0.510023 | 1_3:+33653836 | None:intergenic |
| CGAAAGTCTTCCAACATCAA+AGG | 0.514799 | 1_3:+33662725 | None:intergenic |
| ATTTGCTCTTGGAAGAGCTC+AGG | 0.515179 | 1_3:-33658336 | Msa0115080:intron |
| TCAGATAGATGTGCGTTGCC+AGG | 0.518989 | 1_3:-33655011 | Msa0115080:intron |
| ACGCACATCTATCTGAGTAT+CGG | 0.521836 | 1_3:+33655018 | None:intergenic |
| CCACAAACTTCAGTGAAGTA+AGG | 0.522094 | 1_3:+33664001 | None:intergenic |
| ATATACCTAAAACTAGAGCT+TGG | 0.522967 | 1_3:+33664396 | None:intergenic |
| AAAATCTTGTCGCTTTGCCT+GGG | 0.523181 | 1_3:-33655822 | Msa0115080:intron |
| CTTTGTGGTGCCTGATCTCG+AGG | 0.524870 | 1_3:-33653458 | Msa0115080:three_prime_UTR |
| ATCGGGATCTGTATCAACTT+TGG | 0.527660 | 1_3:+33655036 | None:intergenic |
| GGATCTGTATCAACTTTGGT+GGG | 0.527910 | 1_3:+33655040 | None:intergenic |
| ATTACTGAGTGCATGAAGAA+AGG | 0.528301 | 1_3:-33662650 | Msa0115080:intron |
| GATCAATTTGAGCCGCTCCT+AGG | 0.528508 | 1_3:+33660890 | None:intergenic |
| GTTTACATATTGGTAAATGG+TGG | 0.530895 | 1_3:-33653539 | Msa0115080:three_prime_UTR |
| GTTGGTTGATCGTCGGGGTG+AGG | 0.531692 | 1_3:-33662696 | Msa0115080:CDS |
| CAGATACGTGCATATTATGC+AGG | 0.531738 | 1_3:-33662115 | Msa0115080:CDS |
| TGCAACCATTACATCATCAA+TGG | 0.531807 | 1_3:-33664423 | Msa0115080:CDS |
| ATCACAAGATGCTTATAGGT+TGG | 0.532804 | 1_3:-33657073 | Msa0115080:CDS |
| TGTGTAATAGTCAAAATCAA+TGG | 0.533569 | 1_3:-33664265 | Msa0115080:CDS |
| TTCAAAATGCGCTCGAGAGA+GGG | 0.542927 | 1_3:-33660006 | Msa0115080:CDS |
| GTAGGGCATAAATTAACGTC+AGG | 0.553447 | 1_3:-33655067 | Msa0115080:CDS |
| GACGCTTCTGCATTTACGTA+CGG | 0.556744 | 1_3:+33653796 | None:intergenic |
| GAAGATGAAAGAGCAGCAGA+TGG | 0.556757 | 1_3:-33653658 | Msa0115080:CDS |
| ATTCAAAATGCGCTCGAGAG+AGG | 0.557482 | 1_3:-33660007 | Msa0115080:CDS |
| TGTTGGACGAAAAGAAGCAC+GGG | 0.558183 | 1_3:-33653567 | Msa0115080:CDS |
| GTGTTTATGATGCTGGAGAA+AGG | 0.558298 | 1_3:-33653076 | Msa0115080:three_prime_UTR |
| AAGCAAACTGTGAATATGAA+AGG | 0.561293 | 1_3:-33653335 | Msa0115080:three_prime_UTR |
| TGCAGTCACTTGGATCATGT+TGG | 0.565848 | 1_3:-33664031 | Msa0115080:intron |
| ATGTGTTTCTGGAGGAGGAA+AGG | 0.566477 | 1_3:-33658372 | Msa0115080:CDS |
| GCATGGTGAGAAGCCTAAGA+TGG | 0.575124 | 1_3:-33653905 | Msa0115080:CDS |
| ATTATTTAGATATTTAATTG+GGG | 0.576235 | 1_3:-33653004 | Msa0115080:three_prime_UTR |
| TGTGAATATGAAAGGTTGCA+AGG | 0.579136 | 1_3:-33653327 | Msa0115080:three_prime_UTR |
| TTGTTTGCAGGATGGGAACA+CGG | 0.580061 | 1_3:+33653844 | None:intergenic |
| GCTCTTCCAAGAGCAAATGT+TGG | 0.581537 | 1_3:+33658341 | None:intergenic |
| GCAAAGAGAACACAAGGACC+AGG | 0.582633 | 1_3:+33655910 | None:intergenic |
| ACTCCTGGGATGATACTTGG+TGG | 0.584099 | 1_3:-33655886 | Msa0115080:CDS |
| GTTCATAAATGTGTTTCTGG+AGG | 0.584756 | 1_3:-33658380 | Msa0115080:CDS |
| ATTGTATGGCTGGAACTGTA+GGG | 0.588783 | 1_3:-33655084 | Msa0115080:CDS |
| GCAATGTTCTATGTAAAAGT+GGG | 0.592359 | 1_3:-33660964 | Msa0115080:CDS |
| GTTTCAGAAATGCAGTTCAG+TGG | 0.592784 | 1_3:-33653734 | Msa0115080:CDS |
| GGAAGACTTTCGGAAAGTGT+TGG | 0.601038 | 1_3:-33662714 | Msa0115080:CDS |
| CTGCAGTTCACAAATTTGAG+AGG | 0.608297 | 1_3:-33655948 | Msa0115080:intron |
| AATCCACCAAGTATCATCCC+AGG | 0.609445 | 1_3:+33655883 | None:intergenic |
| CACTAGCATAACATGCTTTG+GGG | 0.609757 | 1_3:+33653927 | None:intergenic |
| ACTGAAGTTTGTGGGTACAG+TGG | 0.613961 | 1_3:-33663992 | Msa0115080:CDS |
| ATGTTGGACGAAAAGAAGCA+CGG | 0.614169 | 1_3:-33653568 | Msa0115080:CDS |
| ACCAAGTATCATCCCAGGAG+TGG | 0.615613 | 1_3:+33655888 | None:intergenic |
| AAAATCAAATGCATTATGTG+TGG | 0.616999 | 1_3:+33657022 | None:intergenic |
| AAGACAATCATGTTCGATTG+CGG | 0.620905 | 1_3:-33664241 | Msa0115080:CDS |
| TGAATTAACAGAGCACCAGA+TGG | 0.620916 | 1_3:-33653266 | Msa0115080:three_prime_UTR |
| ATCCCTTTAGAGTCAGTGTG+AGG | 0.643471 | 1_3:+33653973 | None:intergenic |
| GGAGTGGCAAAGAGAACACA+AGG | 0.643913 | 1_3:+33655904 | None:intergenic |
| ATGACACCAGATAGACACCT+AGG | 0.654218 | 1_3:-33660907 | Msa0115080:CDS |
| ACCAGATAGACACCTAGGAG+CGG | 0.694856 | 1_3:-33660902 | Msa0115080:CDS |
| TTTGTGGTGCCTGATCTCGA+GGG | 0.695575 | 1_3:-33653457 | Msa0115080:three_prime_UTR |
| AAGCATGTTATGCTAGTGCA+TGG | 0.700149 | 1_3:-33653922 | Msa0115080:CDS |
| TGCTTCAAAAGAGAGATGCG+CGG | 0.704215 | 1_3:+33653392 | None:intergenic |
| ACGTTTAGAGAAGAAAACGC+AGG | 0.713642 | 1_3:-33664521 | Msa0115080:CDS |
| AAAGTGTTGGTTGATCGTCG+GGG | 0.731605 | 1_3:-33662701 | Msa0115080:CDS |
| GTTGGACGAAAAGAAGCACG+GGG | 0.747830 | 1_3:-33653566 | Msa0115080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATTTGTTATTATTTT+CGG | - | chr1_3:33653832-33653851 | Msa0115080:CDS | 10.0% |
| !! | TAAGAATTAATAACTAATAA+GGG | + | chr1_3:33654305-33654324 | None:intergenic | 10.0% |
| !! | TTCCTATTTAATTAATTTAA+GGG | + | chr1_3:33654521-33654540 | None:intergenic | 10.0% |
| !! | TTTCCTATTTAATTAATTTA+AGG | + | chr1_3:33654522-33654541 | None:intergenic | 10.0% |
| !! | TTAAACTATATTAAGATATT+TGG | + | chr1_3:33659596-33659615 | None:intergenic | 10.0% |
| !! | AGTTTAAGTAAAATTAAAAT+AGG | - | chr1_3:33659609-33659628 | Msa0115080:intron | 10.0% |
| !!! | TATCAATATCATTTTATTTT+TGG | + | chr1_3:33659649-33659668 | None:intergenic | 10.0% |
| !! | CTTTATAAGTAAATTTAATT+TGG | + | chr1_3:33661443-33661462 | None:intergenic | 10.0% |
| !! | TAAAGAAAAAGAATATAAAT+GGG | + | chr1_3:33661753-33661772 | None:intergenic | 10.0% |
| !! | ACAATTTATTTAAGAAAAAA+AGG | - | chr1_3:33663452-33663471 | Msa0115080:intron | 10.0% |
| !! | GTATTATTTAGATATTTAAT+TGG | - | chr1_3:33664539-33664558 | Msa0115080:CDS | 10.0% |
| !! | ATTATTTAGATATTTAATTG+GGG | - | chr1_3:33664541-33664560 | Msa0115080:CDS | 10.0% |
| !! | AAAAAAAATGAAGAAATGAA+TGG | + | chr1_3:33653444-33653463 | None:intergenic | 15.0% |
| !! | AAATTATTTGAAAAAGCTTA+TGG | + | chr1_3:33654076-33654095 | None:intergenic | 15.0% |
| !! | CTAAGAATTAATAACTAATA+AGG | + | chr1_3:33654306-33654325 | None:intergenic | 15.0% |
| !! | AACCCTTAAATTAATTAAAT+AGG | - | chr1_3:33654516-33654535 | Msa0115080:intron | 15.0% |
| !! | TGAAATTTCAAATTTATACA+AGG | - | chr1_3:33654570-33654589 | Msa0115080:intron | 15.0% |
| !!! | GATGTACAATTATTATTTTT+TGG | - | chr1_3:33655991-33656010 | Msa0115080:intron | 15.0% |
| !!! | ACAATTATTATTTTTTGGAA+TGG | - | chr1_3:33655996-33656015 | Msa0115080:intron | 15.0% |
| !!! | ACATTAATATTTTGTAATTC+AGG | - | chr1_3:33656429-33656448 | Msa0115080:intron | 15.0% |
| !! | TTATAAATTGTTAAGGTTAT+TGG | - | chr1_3:33656554-33656573 | Msa0115080:intron | 15.0% |
| !! | TTTACATGTTTATTGTTTAT+AGG | - | chr1_3:33656787-33656806 | Msa0115080:intron | 15.0% |
| !! | TTACATGTTTATTGTTTATA+GGG | - | chr1_3:33656788-33656807 | Msa0115080:intron | 15.0% |
| !! | TTTAATCGAAAAAATGAAAT+TGG | + | chr1_3:33657212-33657231 | None:intergenic | 15.0% |
| !! | ATAACAAGATTAACAAATTA+AGG | + | chr1_3:33657246-33657265 | None:intergenic | 15.0% |
| !! | ATGTTCAATTATACAAATTA+GGG | + | chr1_3:33657277-33657296 | None:intergenic | 15.0% |
| !! | TATGTTCAATTATACAAATT+AGG | + | chr1_3:33657278-33657297 | None:intergenic | 15.0% |
| !!! | TAATTTGTATAATTGAACAT+AGG | - | chr1_3:33657277-33657296 | Msa0115080:intron | 15.0% |
| !! | GTTTCTTCAATATTTAATAA+TGG | - | chr1_3:33657381-33657400 | Msa0115080:intron | 15.0% |
| !! | TATTTAATAATGGTTCATTA+TGG | - | chr1_3:33657391-33657410 | Msa0115080:intron | 15.0% |
| !! | TATATATAGCTAATAAACTT+GGG | + | chr1_3:33658145-33658164 | None:intergenic | 15.0% |
| !! | TTATATATAGCTAATAAACT+TGG | + | chr1_3:33658146-33658165 | None:intergenic | 15.0% |
| !! | CTATATATAACTGTTTAATA+GGG | - | chr1_3:33658156-33658175 | Msa0115080:intron | 15.0% |
| !! | AACAACTTTATTAGAATATT+TGG | - | chr1_3:33658185-33658204 | Msa0115080:intron | 15.0% |
| !!! | AACTTCAAATTAATTGATTT+AGG | - | chr1_3:33659143-33659162 | Msa0115080:intron | 15.0% |
| !!! | TTGATATTTTTTTCAATGTT+TGG | - | chr1_3:33659663-33659682 | Msa0115080:intron | 15.0% |
| !! | GATGAAAATTAAAAATTCAT+AGG | + | chr1_3:33660265-33660284 | None:intergenic | 15.0% |
| !!! | TTAATTTTCATCATTGATTT+AGG | - | chr1_3:33660273-33660292 | Msa0115080:intron | 15.0% |
| !!! | ATAGCAATAAAGTTATTTTT+TGG | - | chr1_3:33660303-33660322 | Msa0115080:intron | 15.0% |
| !!! | TTTTTTTGTTGTTAGAAAAA+TGG | + | chr1_3:33660715-33660734 | None:intergenic | 15.0% |
| !! | TTAAATATGTGATATAATGA+TGG | - | chr1_3:33661309-33661328 | Msa0115080:intron | 15.0% |
| !! | GTAAAGAAAAAGAATATAAA+TGG | + | chr1_3:33661754-33661773 | None:intergenic | 15.0% |
| !! | CATAAAGAAAAATAATACTA+GGG | + | chr1_3:33662359-33662378 | None:intergenic | 15.0% |
| !! | ACATAAAGAAAAATAATACT+AGG | + | chr1_3:33662360-33662379 | None:intergenic | 15.0% |
| !! | AAATTTCCTTGTAAATAAAA+GGG | + | chr1_3:33662576-33662595 | None:intergenic | 15.0% |
| !! | TAAATTTCCTTGTAAATAAA+AGG | + | chr1_3:33662577-33662596 | None:intergenic | 15.0% |
| !! | AAATAAGTAAATTAAAAAGC+AGG | - | chr1_3:33662675-33662694 | Msa0115080:CDS | 15.0% |
| !! | TCTAACTATATAGATTTATT+AGG | + | chr1_3:33663056-33663075 | None:intergenic | 15.0% |
| !! | GGAGAATAATAATAATAAAA+AGG | - | chr1_3:33663922-33663941 | Msa0115080:intron | 15.0% |
| !! | GTAAATCAAGAATTATTTAT+AGG | - | chr1_3:33664563-33664582 | Msa0115080:CDS | 15.0% |
| !! | ATTTCAAATTTATACAAGGA+AGG | - | chr1_3:33654574-33654593 | Msa0115080:intron | 20.0% |
| !!! | GTTTTTGTATTAACATTTGT+TGG | - | chr1_3:33654636-33654655 | Msa0115080:intron | 20.0% |
| !! | TCAAGCAAAATTTATTATTG+TGG | + | chr1_3:33654758-33654777 | None:intergenic | 20.0% |
| !!! | TTTTTGTAGTATCTATATGT+TGG | - | chr1_3:33654938-33654957 | Msa0115080:intron | 20.0% |
| !!! | AGATTTAACACATGTTATTT+TGG | - | chr1_3:33655506-33655525 | Msa0115080:intron | 20.0% |
| !!! | GAATTTTTGTGTAAATAAGA+TGG | - | chr1_3:33655556-33655575 | Msa0115080:intron | 20.0% |
| !!! | TTCTGATTTGACAATTTTTT+CGG | + | chr1_3:33655596-33655615 | None:intergenic | 20.0% |
| !! | TATTCTGTTTATGTTATGTA+TGG | + | chr1_3:33655620-33655639 | None:intergenic | 20.0% |
| !! | TTAAGTTTAACTAAAAGATC+AGG | + | chr1_3:33656236-33656255 | None:intergenic | 20.0% |
| !! | AGTACTAAAATATCAATTCA+AGG | + | chr1_3:33656507-33656526 | None:intergenic | 20.0% |
| !! | TATAATAAAAATAGGCTGAA+TGG | + | chr1_3:33656539-33656558 | None:intergenic | 20.0% |
| !! | GGTTAAATAAAGAAAAATGA+GGG | + | chr1_3:33657191-33657210 | None:intergenic | 20.0% |
| !! | TGGTTAAATAAAGAAAAATG+AGG | + | chr1_3:33657192-33657211 | None:intergenic | 20.0% |
| !!! | CTAGAAGTGTTTATTTAATT+TGG | - | chr1_3:33657612-33657631 | Msa0115080:CDS | 20.0% |
| !!! | AAGATTTCTGAGATAAAATA+AGG | + | chr1_3:33657640-33657659 | None:intergenic | 20.0% |
| !! | ATAGTTATTACAAAGAAACA+GGG | - | chr1_3:33657828-33657847 | Msa0115080:intron | 20.0% |
| !! | GCTATATATAACTGTTTAAT+AGG | - | chr1_3:33658155-33658174 | Msa0115080:intron | 20.0% |
| !!! | GAAATTAAAAAACGTTTTCT+CGG | + | chr1_3:33658227-33658246 | None:intergenic | 20.0% |
| !!! | CTAAAACCAAAATATTTTCA+AGG | - | chr1_3:33658783-33658802 | Msa0115080:intron | 20.0% |
| !! | GCTAATTAAAGAAAAAGTAA+GGG | + | chr1_3:33659513-33659532 | None:intergenic | 20.0% |
| !!! | AAAAAGCATGTGATAATATT+TGG | + | chr1_3:33660023-33660042 | None:intergenic | 20.0% |
| !! | TCAAAAATAAAAGAAAGAAG+TGG | - | chr1_3:33660188-33660207 | Msa0115080:intron | 20.0% |
| !! | TTCTACTAACTATTTGAATA+TGG | - | chr1_3:33660409-33660428 | Msa0115080:intron | 20.0% |
| !!! | AATGCATTTGATTTTAAGAA+TGG | - | chr1_3:33660531-33660550 | Msa0115080:intron | 20.0% |
| !! | CTAAATGATTATGAGATTTA+AGG | - | chr1_3:33660852-33660871 | Msa0115080:intron | 20.0% |
| !!! | ATGATAGATATTTTCATATC+TGG | - | chr1_3:33661201-33661220 | Msa0115080:intron | 20.0% |
| !!! | AGAAAAAAGCTTTAGTAAAT+TGG | - | chr1_3:33661254-33661273 | Msa0115080:intron | 20.0% |
| !!! | AAAATGCTTTTAAGTTCTAT+TGG | - | chr1_3:33661397-33661416 | Msa0115080:intron | 20.0% |
| !! | AGCTACTATAAAAGTTAAAA+AGG | + | chr1_3:33661783-33661802 | None:intergenic | 20.0% |
| !!! | GTATCACATTTAAAAGTATA+TGG | - | chr1_3:33661858-33661877 | Msa0115080:intron | 20.0% |
| !! | GCATATACAAGTAAATAAAT+CGG | - | chr1_3:33662641-33662660 | Msa0115080:intron | 20.0% |
| !!! | ATTTACTTATTTTGATCAGT+AGG | + | chr1_3:33662667-33662686 | None:intergenic | 20.0% |
| !! | AAACAATCAACATAGAAATA+TGG | + | chr1_3:33662805-33662824 | None:intergenic | 20.0% |
| !! | TTAGTTTACATATTGGTAAA+TGG | - | chr1_3:33664003-33664022 | Msa0115080:CDS | 20.0% |
| !!! | TTTTGAAGCATTATTGTTTT+AGG | - | chr1_3:33664166-33664185 | Msa0115080:CDS | 20.0% |
| !! | GAAAGGAAATTATGTTATAT+TGG | - | chr1_3:33664486-33664505 | Msa0115080:CDS | 20.0% |
| ! | TGTGTAATAGTCAAAATCAA+TGG | - | chr1_3:33653280-33653299 | Msa0115080:three_prime_UTR | 25.0% |
| ! | TTATTCAATGAAGTCAATGT+AGG | - | chr1_3:33653680-33653699 | Msa0115080:CDS | 25.0% |
| ! | TTCTTAGATGTACTCAAATT+AGG | - | chr1_3:33653897-33653916 | Msa0115080:CDS | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | + | chr1_3:33653923-33653942 | None:intergenic | 25.0% |
| ! | CGTTTATCATTTAAGTGTTT+AGG | - | chr1_3:33653948-33653967 | Msa0115080:CDS | 25.0% |
| ! | AAAGTAATGCTAAGTTTAAC+AGG | - | chr1_3:33654486-33654505 | Msa0115080:intron | 25.0% |
| !! | ATGTTGTAATTTTTGCTTGA+TGG | - | chr1_3:33654668-33654687 | Msa0115080:intron | 25.0% |
| !! | TGTTGTAATTTTTGCTTGAT+GGG | - | chr1_3:33654669-33654688 | Msa0115080:intron | 25.0% |
| ! | AGATACTACAAAAAGTAAAG+AGG | + | chr1_3:33654932-33654951 | None:intergenic | 25.0% |
| ! | TACATGATATATATTGTAGC+TGG | - | chr1_3:33654999-33655018 | Msa0115080:intron | 25.0% |
| ! | TGTTAAATCTATTACTGCAA+AGG | + | chr1_3:33655496-33655515 | None:intergenic | 25.0% |
| ! | AAAATTCACAAGAACTTCTA+TGG | + | chr1_3:33655543-33655562 | None:intergenic | 25.0% |
| ! | ACTTTATTGTAAGCAAAAGT+AGG | + | chr1_3:33656076-33656095 | None:intergenic | 25.0% |
| !! | ATAACTCGTAATTTTATACG+AGG | - | chr1_3:33656397-33656416 | Msa0115080:intron | 25.0% |
| ! | TAGAAATATGAACCAATCAT+TGG | - | chr1_3:33656868-33656887 | Msa0115080:intron | 25.0% |
| ! | TCCAAAAATCTAACTAGTTA+GGG | + | chr1_3:33656899-33656918 | None:intergenic | 25.0% |
| ! | TTCCAAAAATCTAACTAGTT+AGG | + | chr1_3:33656900-33656919 | None:intergenic | 25.0% |
| !!! | TAGTTAGATTTTTGGAAAGT+TGG | - | chr1_3:33656903-33656922 | Msa0115080:intron | 25.0% |
| ! | ACATAAAGGTTGAAGTAATA+AGG | + | chr1_3:33657098-33657117 | None:intergenic | 25.0% |
| ! | ACAAGATTAACAAATTAAGG+TGG | + | chr1_3:33657243-33657262 | None:intergenic | 25.0% |
| ! | GTAAGTTGTAAACATAACAA+TGG | + | chr1_3:33657329-33657348 | None:intergenic | 25.0% |
| ! | TGTTATGTTTACAACTTACA+AGG | - | chr1_3:33657330-33657349 | Msa0115080:intron | 25.0% |
| !!! | GCAAGTTTTGAAAATACATA+CGG | + | chr1_3:33657577-33657596 | None:intergenic | 25.0% |
| ! | GTCAACTTCAAATATAACTA+AGG | + | chr1_3:33657704-33657723 | None:intergenic | 25.0% |
| !! | TTATATTTGAAGTTGACCTT+TGG | - | chr1_3:33657707-33657726 | Msa0115080:intron | 25.0% |
| ! | GATAGTTATTACAAAGAAAC+AGG | - | chr1_3:33657827-33657846 | Msa0115080:intron | 25.0% |
| ! | TAGTTATTACAAAGAAACAG+GGG | - | chr1_3:33657829-33657848 | Msa0115080:intron | 25.0% |
| ! | AGAGTCTATATTGTAATCAA+GGG | + | chr1_3:33657862-33657881 | None:intergenic | 25.0% |
| ! | TAGAGTCTATATTGTAATCA+AGG | + | chr1_3:33657863-33657882 | None:intergenic | 25.0% |
| ! | ATGTGTAAATAATAGAAGAG+AGG | + | chr1_3:33658095-33658114 | None:intergenic | 25.0% |
| ! | TCTATTATTTACACATACTG+TGG | - | chr1_3:33658099-33658118 | Msa0115080:intron | 25.0% |
| ! | ATATTTGGACCAAGTTTATT+TGG | - | chr1_3:33658200-33658219 | Msa0115080:intron | 25.0% |
| !!! | TTTGTTTTGAAAGATTTGTG+TGG | - | chr1_3:33658305-33658324 | Msa0115080:intron | 25.0% |
| ! | TCTACAAATCTATGAAAACA+GGG | - | chr1_3:33658366-33658385 | Msa0115080:CDS | 25.0% |
| ! | TCCTAAAACAATAAAACAAG+GGG | + | chr1_3:33658638-33658657 | None:intergenic | 25.0% |
| ! | CTCCTAAAACAATAAAACAA+GGG | + | chr1_3:33658639-33658658 | None:intergenic | 25.0% |
| !!! | CTTGTTTTATTGTTTTAGGA+GGG | - | chr1_3:33658638-33658657 | Msa0115080:intron | 25.0% |
| ! | AAATGAAAAGATGATAGCAT+AGG | + | chr1_3:33658677-33658696 | None:intergenic | 25.0% |
| ! | CATTTCTTTGTTCTTAAATG+AGG | - | chr1_3:33658911-33658930 | Msa0115080:intron | 25.0% |
| ! | CTTTCTTCCAAATTAAAACA+AGG | + | chr1_3:33658940-33658959 | None:intergenic | 25.0% |
| ! | ATCTACAATTACTCTTATGT+TGG | - | chr1_3:33659114-33659133 | Msa0115080:intron | 25.0% |
| ! | AAATCCAGCATAAAACATTA+AGG | + | chr1_3:33659441-33659460 | None:intergenic | 25.0% |
| ! | GGCTAATTAAAGAAAAAGTA+AGG | + | chr1_3:33659514-33659533 | None:intergenic | 25.0% |
| !!! | TTCTTTAATTAGCCTTTTAC+AGG | - | chr1_3:33659520-33659539 | Msa0115080:intron | 25.0% |
| ! | TTTGAATTTCGATAGCTAAA+CGG | + | chr1_3:33659826-33659845 | None:intergenic | 25.0% |
| ! | ACCAAGTTATTATGATATGT+AGG | - | chr1_3:33659882-33659901 | Msa0115080:intron | 25.0% |
| ! | TCCTACATATCATAATAACT+TGG | + | chr1_3:33659886-33659905 | None:intergenic | 25.0% |
| ! | AAAATAAAAGAAAGAAGTGG+AGG | - | chr1_3:33660191-33660210 | Msa0115080:intron | 25.0% |
| ! | AAATAAAAGAAAGAAGTGGA+GGG | - | chr1_3:33660192-33660211 | Msa0115080:intron | 25.0% |
| !!! | ATATGGATTTTTTTTCTTCC+AGG | - | chr1_3:33660426-33660445 | Msa0115080:intron | 25.0% |
| ! | AAAATCAAATGCATTATGTG+TGG | + | chr1_3:33660526-33660545 | None:intergenic | 25.0% |
| ! | TTTATACCAACTAACTGTAA+AGG | + | chr1_3:33660820-33660839 | None:intergenic | 25.0% |
| ! | CTAAAATAATGATAGTTGAC+TGG | - | chr1_3:33661011-33661030 | Msa0115080:intron | 25.0% |
| ! | CATCTATAAAATTACAAGAG+AGG | - | chr1_3:33661102-33661121 | Msa0115080:intron | 25.0% |
| !!! | GTAAATTGGTTTAGTTTTTG+AGG | - | chr1_3:33661268-33661287 | Msa0115080:intron | 25.0% |
| ! | ACATGTTTATCAAAGTTAGA+GGG | + | chr1_3:33661344-33661363 | None:intergenic | 25.0% |
| ! | TACATGTTTATCAAAGTTAG+AGG | + | chr1_3:33661345-33661364 | None:intergenic | 25.0% |
| ! | TTGTTCATCTTCTATCTAAT+CGG | + | chr1_3:33661809-33661828 | None:intergenic | 25.0% |
| ! | TCAAAATACACTTAACTACT+AGG | + | chr1_3:33661909-33661928 | None:intergenic | 25.0% |
| !!! | CTTCATTTAGTTTTTCTCAT+TGG | + | chr1_3:33662298-33662317 | None:intergenic | 25.0% |
| ! | CAATGAGAAAAACTAAATGA+AGG | - | chr1_3:33662296-33662315 | Msa0115080:intron | 25.0% |
| ! | AGAAAAACTAAATGAAGGTT+TGG | - | chr1_3:33662301-33662320 | Msa0115080:intron | 25.0% |
| ! | TATAATCTGTGAAAGTAAAG+AGG | + | chr1_3:33662710-33662729 | None:intergenic | 25.0% |
| !! | TTTCTATGTTGATTGTTTGT+TGG | - | chr1_3:33662807-33662826 | Msa0115080:intron | 25.0% |
| ! | CTATTCAATTCTGTGATAAA+TGG | + | chr1_3:33662947-33662966 | None:intergenic | 25.0% |
| ! | ATGGACAAAATTTGTAACAA+CGG | + | chr1_3:33663216-33663235 | None:intergenic | 25.0% |
| !! | TGTTACAAATTTTGTCCATA+AGG | - | chr1_3:33663217-33663236 | Msa0115080:intron | 25.0% |
| ! | ATACTTAAAGTGATGATACA+AGG | - | chr1_3:33663240-33663259 | Msa0115080:intron | 25.0% |
| ! | ACTATATCTTTCAATCTTTG+AGG | - | chr1_3:33663276-33663295 | Msa0115080:intron | 25.0% |
| ! | CTATATCTTTCAATCTTTGA+GGG | - | chr1_3:33663277-33663296 | Msa0115080:intron | 25.0% |
| ! | AATTCTTCAGAAGACTTATA+TGG | - | chr1_3:33663317-33663336 | Msa0115080:intron | 25.0% |
| !! | ATAGAATTGATTCTGAATTG+AGG | - | chr1_3:33663675-33663694 | Msa0115080:intron | 25.0% |
| ! | AAACTATGTGCTCATAATTT+AGG | - | chr1_3:33664441-33664460 | Msa0115080:CDS | 25.0% |
| ATATACCTAAAACTAGAGCT+TGG | + | chr1_3:33653152-33653171 | None:intergenic | 30.0% | |
| ATCAATTTCAATAAACGTGC+AGG | - | chr1_3:33653232-33653251 | Msa0115080:three_prime_UTR | 30.0% | |
| !!! | TTTTGAAATCAGGAAAACGA+CGG | + | chr1_3:33653354-33653373 | None:intergenic | 30.0% |
| !!! | CGTGAAATCTTTTTGAAATC+AGG | + | chr1_3:33653364-33653383 | None:intergenic | 30.0% |
| TTCAAAAAGATTTCACGAAC+TGG | - | chr1_3:33653367-33653386 | Msa0115080:three_prime_UTR | 30.0% | |
| TCAAAAAGATTTCACGAACT+GGG | - | chr1_3:33653368-33653387 | Msa0115080:three_prime_UTR | 30.0% | |
| CATTTCATCAAACAGGTAAT+AGG | + | chr1_3:33653603-33653622 | None:intergenic | 30.0% | |
| AGTCAAACATTTCATCAAAC+AGG | + | chr1_3:33653610-33653629 | None:intergenic | 30.0% | |
| TTTATCAGGTGAAATCAATG+CGG | + | chr1_3:33653747-33653766 | None:intergenic | 30.0% | |
| !! | TTCAGTAATGTTTTTGCTAG+TGG | - | chr1_3:33654094-33654113 | Msa0115080:intron | 30.0% |
| !!! | TGTTTTGATGATTGTGTGAA+AGG | - | chr1_3:33654255-33654274 | Msa0115080:intron | 30.0% |
| AAAGTAAATGTAGCCTTTGT+TGG | - | chr1_3:33654384-33654403 | Msa0115080:intron | 30.0% | |
| ATTCGGGAAACATTTCATAA+AGG | + | chr1_3:33654440-33654459 | None:intergenic | 30.0% | |
| TATACAAGGAAGGAAACAAT+TGG | - | chr1_3:33654584-33654603 | Msa0115080:intron | 30.0% | |
| TTATTGTGGAATTACAACCA+AGG | + | chr1_3:33654744-33654763 | None:intergenic | 30.0% | |
| !! | TGTCACAAGGATTTTAATGA+AGG | - | chr1_3:33655070-33655089 | Msa0115080:CDS | 30.0% |
| CTGAAATGACATTTATAGAC+TGG | + | chr1_3:33655111-33655130 | None:intergenic | 30.0% | |
| AGAGAGAAACTAGAATTACA+TGG | - | chr1_3:33655179-33655198 | Msa0115080:intron | 30.0% | |
| !! | TTTTAGAGAAGATTTTGCCA+TGG | - | chr1_3:33655221-33655240 | Msa0115080:intron | 30.0% |
| TTGTGTAAATAAGATGGTAG+AGG | - | chr1_3:33655562-33655581 | Msa0115080:intron | 30.0% | |
| TCCAGTATCATTCAAGATTA+GGG | - | chr1_3:33655703-33655722 | Msa0115080:intron | 30.0% | |
| GCTTTAATTGTATTTGCAAG+AGG | - | chr1_3:33655731-33655750 | Msa0115080:intron | 30.0% | |
| AAAGGAATAAGTTCACCTAA+TGG | + | chr1_3:33655762-33655781 | None:intergenic | 30.0% | |
| !!! | CCTGGTTTTGCTTATAATTA+AGG | + | chr1_3:33655959-33655978 | None:intergenic | 30.0% |
| CCTTAATTATAAGCAAAACC+AGG | - | chr1_3:33655956-33655975 | Msa0115080:intron | 30.0% | |
| ! | CTTTTGCTTACAATAAAGTC+CGG | - | chr1_3:33656077-33656096 | Msa0115080:intron | 30.0% |
| !! | AGGGAGTATACAGTAATTTT+GGG | - | chr1_3:33656100-33656119 | Msa0115080:intron | 30.0% |
| AATATTGTGAAACACTGGAA+TGG | - | chr1_3:33656139-33656158 | Msa0115080:intron | 30.0% | |
| CTAGATGATATGGAAATTGA+GGG | + | chr1_3:33656194-33656213 | None:intergenic | 30.0% | |
| ACTAGATGATATGGAAATTG+AGG | + | chr1_3:33656195-33656214 | None:intergenic | 30.0% | |
| ! | TATGATGGAACTAGATGATA+TGG | + | chr1_3:33656204-33656223 | None:intergenic | 30.0% |
| TGCAATGTTCTATGTAAAAG+TGG | - | chr1_3:33656580-33656599 | Msa0115080:intron | 30.0% | |
| GCAATGTTCTATGTAAAAGT+GGG | - | chr1_3:33656581-33656600 | Msa0115080:intron | 30.0% | |
| CTTCTTACTCAGTTATAAGA+AGG | + | chr1_3:33656694-33656713 | None:intergenic | 30.0% | |
| TATCTTCAACGTTGTATTGA+AGG | - | chr1_3:33656749-33656768 | Msa0115080:intron | 30.0% | |
| CCAAAAATCTAACTAGTTAG+GGG | + | chr1_3:33656898-33656917 | None:intergenic | 30.0% | |
| !! | TTTTGATAGCATAGCATGTA+AGG | + | chr1_3:33656930-33656949 | None:intergenic | 30.0% |
| !! | AAATATGGTTTGGTGATTTG+AGG | + | chr1_3:33657126-33657145 | None:intergenic | 30.0% |
| CTTCAAATATAACTAAGGAC+AGG | + | chr1_3:33657699-33657718 | None:intergenic | 30.0% | |
| !! | TGAACTCTCTAAAATACCAA+AGG | + | chr1_3:33657726-33657745 | None:intergenic | 30.0% |
| !!! | TGTTTTGACTGAAGTAAAGA+AGG | - | chr1_3:33657746-33657765 | Msa0115080:intron | 30.0% |
| AGGTTCATAATGATATCATG+AGG | + | chr1_3:33657904-33657923 | None:intergenic | 30.0% | |
| TGATATCATTATGAACCTGT+AGG | - | chr1_3:33657906-33657925 | Msa0115080:intron | 30.0% | |
| GATATCATTATGAACCTGTA+GGG | - | chr1_3:33657907-33657926 | Msa0115080:intron | 30.0% | |
| ATATCATTATGAACCTGTAG+GGG | - | chr1_3:33657908-33657927 | Msa0115080:intron | 30.0% | |
| TAGTAGTTTGGGAAAGAATT+GGG | + | chr1_3:33658055-33658074 | None:intergenic | 30.0% | |
| TAAATAATAGAAGAGAGGAG+AGG | + | chr1_3:33658090-33658109 | None:intergenic | 30.0% | |
| TTGAAAGATTTGTGTGGAAA+TGG | - | chr1_3:33658311-33658330 | Msa0115080:intron | 30.0% | |
| ! | CTGTTTTCATAGATTTGTAG+AGG | + | chr1_3:33658367-33658386 | None:intergenic | 30.0% |
| CTCTACAAATCTATGAAAAC+AGG | - | chr1_3:33658365-33658384 | Msa0115080:CDS | 30.0% | |
| ! | GAAATGAGGAAAAGGAATTT+TGG | - | chr1_3:33658533-33658552 | Msa0115080:intron | 30.0% |
| TTCCAGACTATCCATTATAT+GGG | + | chr1_3:33658572-33658591 | None:intergenic | 30.0% | |
| !!! | TCCCCTTGTTTTATTGTTTT+AGG | - | chr1_3:33658634-33658653 | Msa0115080:intron | 30.0% |
| CCTCCTAAAACAATAAAACA+AGG | + | chr1_3:33658640-33658659 | None:intergenic | 30.0% | |
| !!! | CCTTGTTTTATTGTTTTAGG+AGG | - | chr1_3:33658637-33658656 | Msa0115080:intron | 30.0% |
| ! | AGGAGGAGTACAATAAAAAA+TGG | + | chr1_3:33658704-33658723 | None:intergenic | 30.0% |
| ! | CTGGATCCTTGAAAATATTT+TGG | + | chr1_3:33658792-33658811 | None:intergenic | 30.0% |
| GCGCTATAAATCTTAAATAC+TGG | + | chr1_3:33658811-33658830 | None:intergenic | 30.0% | |
| TAATTGTAGATCACTGTACT+GGG | + | chr1_3:33659105-33659124 | None:intergenic | 30.0% | |
| TAGGTTCATAAATGTGTTTC+TGG | - | chr1_3:33659162-33659181 | Msa0115080:intron | 30.0% | |
| ! | AATGTTTTATGCTGGATTTC+TGG | - | chr1_3:33659442-33659461 | Msa0115080:intron | 30.0% |
| ACATTATAAATGATGAACCG+TGG | + | chr1_3:33659481-33659500 | None:intergenic | 30.0% | |
| !! | CATTTTTGATGACCTGTAAA+AGG | + | chr1_3:33659535-33659554 | None:intergenic | 30.0% |
| ! | CTTTTACAGGTCATCAAAAA+TGG | - | chr1_3:33659533-33659552 | Msa0115080:intron | 30.0% |
| ! | GAAGAAAAATGTCTTTTGAG+CGG | + | chr1_3:33659735-33659754 | None:intergenic | 30.0% |
| TTGAATTTCGATAGCTAAAC+GGG | + | chr1_3:33659825-33659844 | None:intergenic | 30.0% | |
| AGCTATCGAAATTCAAAACA+TGG | - | chr1_3:33659829-33659848 | Msa0115080:intron | 30.0% | |
| ! | TATTTTGTTGGATGACTACT+GGG | - | chr1_3:33659912-33659931 | Msa0115080:intron | 30.0% |
| ATAAGTGTATCTGTAAACCA+GGG | + | chr1_3:33659995-33660014 | None:intergenic | 30.0% | |
| AATAAGTGTATCTGTAAACC+AGG | + | chr1_3:33659996-33660015 | None:intergenic | 30.0% | |
| CTATTGTGATACTAACAACA+CGG | - | chr1_3:33660215-33660234 | Msa0115080:intron | 30.0% | |
| !!! | AAAGTTATTTTTTGGTGCCT+TGG | - | chr1_3:33660311-33660330 | Msa0115080:intron | 30.0% |
| TGAGCTGTATATCTTCATAT+TGG | - | chr1_3:33660348-33660367 | Msa0115080:intron | 30.0% | |
| ! | TTAGCTTGAATAGTTAATCC+TGG | + | chr1_3:33660447-33660466 | None:intergenic | 30.0% |
| AGTATGTGTCTTTAATCTTC+TGG | + | chr1_3:33660503-33660522 | None:intergenic | 30.0% | |
| ! | GGCTTTGTATAACAGAATAA+TGG | + | chr1_3:33660749-33660768 | None:intergenic | 30.0% |
| ! | AAATTGATAGTAAGTGATGC+AGG | - | chr1_3:33660945-33660964 | Msa0115080:CDS | 30.0% |
| GCGAAGGATTTATATGTTAT+GGG | - | chr1_3:33660967-33660986 | Msa0115080:CDS | 30.0% | |
| CGAAGGATTTATATGTTATG+GGG | - | chr1_3:33660968-33660987 | Msa0115080:CDS | 30.0% | |
| TACAAATGATTGAGTAGATC+TGG | - | chr1_3:33661172-33661191 | Msa0115080:intron | 30.0% | |
| ! | TATGTGATATAATGATGGTG+TGG | - | chr1_3:33661314-33661333 | Msa0115080:intron | 30.0% |
| TAAACATGTATTCATGTTCC+AGG | - | chr1_3:33661355-33661374 | Msa0115080:intron | 30.0% | |
| TAAATGTGATACACCAATTG+TGG | + | chr1_3:33661850-33661869 | None:intergenic | 30.0% | |
| !!! | ATTTTGATTGCTTGATGACT+TGG | - | chr1_3:33661922-33661941 | Msa0115080:intron | 30.0% |
| ! | TCCTTATTAGTCTGGAAATT+TGG | - | chr1_3:33662045-33662064 | Msa0115080:intron | 30.0% |
| ! | CCTTATTAGTCTGGAAATTT+GGG | - | chr1_3:33662046-33662065 | Msa0115080:intron | 30.0% |
| ! | CTTATTAGTCTGGAAATTTG+GGG | - | chr1_3:33662047-33662066 | Msa0115080:intron | 30.0% |
| GTCATTGTTGTGGATATTAT+TGG | - | chr1_3:33662088-33662107 | Msa0115080:intron | 30.0% | |
| TTCATTGAAGTTAGTGTAAC+GGG | + | chr1_3:33662117-33662136 | None:intergenic | 30.0% | |
| CTTCATTGAAGTTAGTGTAA+CGG | + | chr1_3:33662118-33662137 | None:intergenic | 30.0% | |
| CACTAACTTCAATGAAGATT+TGG | - | chr1_3:33662121-33662140 | Msa0115080:CDS | 30.0% | |
| AAGAGACAAGAAAAGAAATG+GGG | + | chr1_3:33662207-33662226 | None:intergenic | 30.0% | |
| GAAGAGACAAGAAAAGAAAT+GGG | + | chr1_3:33662208-33662227 | None:intergenic | 30.0% | |
| TGAAGAGACAAGAAAAGAAA+TGG | + | chr1_3:33662209-33662228 | None:intergenic | 30.0% | |
| CAATAAGATTGACACAAATG+AGG | + | chr1_3:33662271-33662290 | None:intergenic | 30.0% | |
| CTCATTTGTGTCAATCTTAT+TGG | - | chr1_3:33662269-33662288 | Msa0115080:intron | 30.0% | |
| AATACTAGGGAAAAGACAAA+AGG | + | chr1_3:33662346-33662365 | None:intergenic | 30.0% | |
| TTATAAATTCAGTTCCGTGT+TGG | - | chr1_3:33662428-33662447 | Msa0115080:intron | 30.0% | |
| !!! | TTGGTTTTGTAGGTATTGTA+TGG | - | chr1_3:33662447-33662466 | Msa0115080:intron | 30.0% |
| TTCCTTGTAAATAAAAGGGT+GGG | + | chr1_3:33662572-33662591 | None:intergenic | 30.0% | |
| TTTCCTTGTAAATAAAAGGG+TGG | + | chr1_3:33662573-33662592 | None:intergenic | 30.0% | |
| AACCTCTATTGCTTAAACAT+TGG | - | chr1_3:33662844-33662863 | Msa0115080:intron | 30.0% | |
| CATCACTTTAAGTATCCTTA+TGG | + | chr1_3:33663235-33663254 | None:intergenic | 30.0% | |
| ATGTATAGTACAAACTGACA+TGG | - | chr1_3:33663404-33663423 | Msa0115080:intron | 30.0% | |
| AAAAAGGAAAAACAGTAGAC+TGG | - | chr1_3:33663468-33663487 | Msa0115080:intron | 30.0% | |
| TTATTGACAGATTCATCAGT+TGG | - | chr1_3:33663541-33663560 | Msa0115080:intron | 30.0% | |
| !! | TCTTTTAGAGAAACCATCTT+AGG | + | chr1_3:33663656-33663675 | None:intergenic | 30.0% |
| !! | CATTTCTGAAACTTGAAGTT+TGG | + | chr1_3:33663803-33663822 | None:intergenic | 30.0% |
| ! | AGATGAAATTTTGCTCATGT+TGG | - | chr1_3:33663961-33663980 | Msa0115080:intron | 30.0% |
| GTTTACATATTGGTAAATGG+TGG | - | chr1_3:33664006-33664025 | Msa0115080:CDS | 30.0% | |
| TTCTTACATTCAAAGCTTTG+TGG | - | chr1_3:33664072-33664091 | Msa0115080:intron | 30.0% | |
| ! | TTCATATTCACAGTTTGCTT+TGG | + | chr1_3:33664210-33664229 | None:intergenic | 30.0% |
| AAGCAAACTGTGAATATGAA+AGG | - | chr1_3:33664210-33664229 | Msa0115080:CDS | 30.0% | |
| !!! | CTTGTTTTTGCTGTGATGTT+TGG | + | chr1_3:33653000-33653019 | None:intergenic | 35.0% |
| TGCAACCATTACATCATCAA+TGG | - | chr1_3:33653122-33653141 | Msa0115080:three_prime_UTR | 35.0% | |
| !! | GATTGCCATTGATGATGTAA+TGG | + | chr1_3:33653130-33653149 | None:intergenic | 35.0% |
| AGAATGAAATGAACGAAGGA+AGG | + | chr1_3:33653184-33653203 | None:intergenic | 35.0% | |
| GCATAGAATGAAATGAACGA+AGG | + | chr1_3:33653188-33653207 | None:intergenic | 35.0% | |
| AAGACAATCATGTTCGATTG+CGG | - | chr1_3:33653304-33653323 | Msa0115080:three_prime_UTR | 35.0% | |
| CTTACTTCACTGAAGTTTGT+GGG | - | chr1_3:33653545-33653564 | Msa0115080:exon | 35.0% | |
| TACTCAAATTAGGCCATGTT+TGG | - | chr1_3:33653907-33653926 | Msa0115080:CDS | 35.0% | |
| TAAGCTATCATGTAGAGCTT+AGG | - | chr1_3:33654018-33654037 | Msa0115080:intron | 35.0% | |
| ATGTCAAAAACGTCCAACAA+AGG | + | chr1_3:33654400-33654419 | None:intergenic | 35.0% | |
| !! | AGGAAAGTATCTCGTAGAAA+AGG | - | chr1_3:33654536-33654555 | Msa0115080:intron | 35.0% |
| !! | GGAAAGTATCTCGTAGAAAA+GGG | - | chr1_3:33654537-33654556 | Msa0115080:intron | 35.0% |
| AACAATTGGCAGAAAAATGC+TGG | - | chr1_3:33654598-33654617 | Msa0115080:intron | 35.0% | |
| AAAATGCTGGTGGTTAATAG+TGG | - | chr1_3:33654611-33654630 | Msa0115080:intron | 35.0% | |
| ! | AAGGAGACAAAGCTTTTGTT+GGG | + | chr1_3:33654804-33654823 | None:intergenic | 35.0% |
| ! | AAAGGAGACAAAGCTTTTGT+TGG | + | chr1_3:33654805-33654824 | None:intergenic | 35.0% |
| CTTTGATGTTGGAAGACTTT+CGG | - | chr1_3:33654821-33654840 | Msa0115080:intron | 35.0% | |
| ATTACTGAGTGCATGAAGAA+AGG | - | chr1_3:33654895-33654914 | Msa0115080:intron | 35.0% | |
| TGCATGAAGAAAGGTAACAT+AGG | - | chr1_3:33654904-33654923 | Msa0115080:intron | 35.0% | |
| TTAGATAAGACATGTCACTG+AGG | - | chr1_3:33654967-33654986 | Msa0115080:intron | 35.0% | |
| ACCAAACTACTAATTGACCA+TGG | + | chr1_3:33655241-33655260 | None:intergenic | 35.0% | |
| AATTGAGATGCTAATGTCAG+AGG | + | chr1_3:33655314-33655333 | None:intergenic | 35.0% | |
| CATATTATGCAGGACATGTA+AGG | - | chr1_3:33655440-33655459 | Msa0115080:intron | 35.0% | |
| !! | AAAGAGTCTTGTTGAAAGTC+TGG | - | chr1_3:33655645-33655664 | Msa0115080:intron | 35.0% |
| GTCCAGTATCATTCAAGATT+AGG | - | chr1_3:33655702-33655721 | Msa0115080:intron | 35.0% | |
| ACCCTAATCTTGAATGATAC+TGG | + | chr1_3:33655707-33655726 | None:intergenic | 35.0% | |
| ! | CTTATTCCTTTTCAGTCACA+TGG | - | chr1_3:33655771-33655790 | Msa0115080:intron | 35.0% |
| GTCTTGTAACACTGCTTAAA+GGG | + | chr1_3:33655825-33655844 | None:intergenic | 35.0% | |
| ! | AGTCTTGTAACACTGCTTAA+AGG | + | chr1_3:33655826-33655845 | None:intergenic | 35.0% |
| TGCTTATAATTAAGGCCAGA+GGG | + | chr1_3:33655951-33655970 | None:intergenic | 35.0% | |
| TTGCTTATAATTAAGGCCAG+AGG | + | chr1_3:33655952-33655971 | None:intergenic | 35.0% | |
| !!! | TACATCGATTTTCTTTGACC+TGG | + | chr1_3:33655977-33655996 | None:intergenic | 35.0% |
| AAATTACTGTATACTCCCTC+CGG | + | chr1_3:33656099-33656118 | None:intergenic | 35.0% | |
| !! | GAGGGAGTATACAGTAATTT+TGG | - | chr1_3:33656099-33656118 | Msa0115080:intron | 35.0% |
| CCAGTGTTTCACAATATTGA+AGG | + | chr1_3:33656137-33656156 | None:intergenic | 35.0% | |
| CCTTCAATATTGTGAAACAC+TGG | - | chr1_3:33656134-33656153 | Msa0115080:intron | 35.0% | |
| ATCAGGAATCAGACATATGA+TGG | + | chr1_3:33656219-33656238 | None:intergenic | 35.0% | |
| GGAGTAATAATGCTAAGGTT+GGG | + | chr1_3:33656350-33656369 | None:intergenic | 35.0% | |
| AGGAGTAATAATGCTAAGGT+TGG | + | chr1_3:33656351-33656370 | None:intergenic | 35.0% | |
| ATGGAGGAGTAATAATGCTA+AGG | + | chr1_3:33656355-33656374 | None:intergenic | 35.0% | |
| ! | CCCCTAACTAGTTAGATTTT+TGG | - | chr1_3:33656895-33656914 | Msa0115080:intron | 35.0% |
| GTAGGAGTGAAAATATGGTT+TGG | + | chr1_3:33657136-33657155 | None:intergenic | 35.0% | |
| GTCATGTAGGAGTGAAAATA+TGG | + | chr1_3:33657141-33657160 | None:intergenic | 35.0% | |
| AAAATGCATATGAATGCTGC+TGG | + | chr1_3:33657357-33657376 | None:intergenic | 35.0% | |
| ! | GCAGCATTCATATGCATTTT+AGG | - | chr1_3:33657357-33657376 | Msa0115080:intron | 35.0% |
| !! | CACTGCTTGTTGTTATAAGA+AGG | - | chr1_3:33657442-33657461 | Msa0115080:intron | 35.0% |
| TGAAAATACATACGGCTTTG+AGG | + | chr1_3:33657569-33657588 | None:intergenic | 35.0% | |
| TATAACTAAGGACAGGTCAA+TGG | + | chr1_3:33657692-33657711 | None:intergenic | 35.0% | |
| TGACTGAAGTAAAGAAGGAA+TGG | - | chr1_3:33657751-33657770 | Msa0115080:intron | 35.0% | |
| !!! | TCCTATTTGGTGCATTTTGT+TGG | - | chr1_3:33657798-33657817 | Msa0115080:intron | 35.0% |
| TCCAACAAAATGCACCAAAT+AGG | + | chr1_3:33657802-33657821 | None:intergenic | 35.0% | |
| ! | TGACATCTCTTTTCTGCTAT+TGG | - | chr1_3:33658000-33658019 | Msa0115080:intron | 35.0% |
| ! | GACATCTCTTTTCTGCTATT+GGG | - | chr1_3:33658001-33658020 | Msa0115080:intron | 35.0% |
| AGTAGTTTGGGAAAGAATTG+GGG | + | chr1_3:33658054-33658073 | None:intergenic | 35.0% | |
| CTAGTAGTTTGGGAAAGAAT+TGG | + | chr1_3:33658056-33658075 | None:intergenic | 35.0% | |
| TAAACTTGGGTAGTTACAGA+GGG | + | chr1_3:33658132-33658151 | None:intergenic | 35.0% | |
| ATAAACTTGGGTAGTTACAG+AGG | + | chr1_3:33658133-33658152 | None:intergenic | 35.0% | |
| TTTCTCGGACCAAATAAACT+TGG | + | chr1_3:33658212-33658231 | None:intergenic | 35.0% | |
| CAACAGTGAAACTGAAAACA+AGG | + | chr1_3:33658285-33658304 | None:intergenic | 35.0% | |
| AGAGTTGAGAAATGAGGAAA+AGG | - | chr1_3:33658525-33658544 | Msa0115080:intron | 35.0% | |
| CTAGTTACAAGCCCATATAA+TGG | - | chr1_3:33658558-33658577 | Msa0115080:intron | 35.0% | |
| CTTCCAGACTATCCATTATA+TGG | + | chr1_3:33658573-33658592 | None:intergenic | 35.0% | |
| ! | TAATGGATAGTCTGGAAGTT+TGG | - | chr1_3:33658575-33658594 | Msa0115080:intron | 35.0% |
| GAAAAGCCACAAACAAATCT+TGG | + | chr1_3:33658738-33658757 | None:intergenic | 35.0% | |
| !!! | GAGGAGTCCTTGTTTTAATT+TGG | - | chr1_3:33658930-33658949 | Msa0115080:intron | 35.0% |
| GTAATTGTAGATCACTGTAC+TGG | + | chr1_3:33659106-33659125 | None:intergenic | 35.0% | |
| !! | GTTCATAAATGTGTTTCTGG+AGG | - | chr1_3:33659165-33659184 | Msa0115080:intron | 35.0% |
| CTTATTCCAACATTTGCTCT+TGG | - | chr1_3:33659198-33659217 | Msa0115080:intron | 35.0% | |
| !! | AAGAGCGTTAGGAATAAGAA+GGG | + | chr1_3:33659312-33659331 | None:intergenic | 35.0% |
| !! | AAAGAGCGTTAGGAATAAGA+AGG | + | chr1_3:33659313-33659332 | None:intergenic | 35.0% |
| TATTCCTAACGCTCTTTCAA+AGG | - | chr1_3:33659316-33659335 | Msa0115080:intron | 35.0% | |
| ATTCCTAACGCTCTTTCAAA+GGG | - | chr1_3:33659317-33659336 | Msa0115080:intron | 35.0% | |
| ! | CATTTGTGCGTATCTTTTCT+AGG | - | chr1_3:33659400-33659419 | Msa0115080:intron | 35.0% |
| ! | CTGTCCTTAATGTTTTATGC+TGG | - | chr1_3:33659434-33659453 | Msa0115080:intron | 35.0% |
| TCTTCAATCCATTATGACCA+AGG | - | chr1_3:33659750-33659769 | Msa0115080:intron | 35.0% | |
| TAATCCAACCTTGGTCATAA+TGG | + | chr1_3:33659761-33659780 | None:intergenic | 35.0% | |
| ATGGTTCATTAATCCAACCT+TGG | + | chr1_3:33659770-33659789 | None:intergenic | 35.0% | |
| AACCATGAAGTGAACTACTT+AGG | - | chr1_3:33659784-33659803 | Msa0115080:intron | 35.0% | |
| ATCCTAAGTAGTTCACTTCA+TGG | + | chr1_3:33659789-33659808 | None:intergenic | 35.0% | |
| AAGTGAACTACTTAGGATTC+TGG | - | chr1_3:33659791-33659810 | Msa0115080:intron | 35.0% | |
| ! | GTATTTTGTTGGATGACTAC+TGG | - | chr1_3:33659911-33659930 | Msa0115080:intron | 35.0% |
| AAACCTGATGAGAAGTAGAT+AGG | + | chr1_3:33659958-33659977 | None:intergenic | 35.0% | |
| TACACCGAAACTTTGCTTTA+GGG | - | chr1_3:33660063-33660082 | Msa0115080:intron | 35.0% | |
| GAATTGTGTTCTGATGCTAA+AGG | - | chr1_3:33660107-33660126 | Msa0115080:intron | 35.0% | |
| TCAGAAGTCACATAAAACCA+AGG | + | chr1_3:33660331-33660350 | None:intergenic | 35.0% | |
| GTGTACTTCTCGTTATTTGT+TGG | - | chr1_3:33660370-33660389 | Msa0115080:intron | 35.0% | |
| ACGTATCACAAGATGCTTAT+AGG | - | chr1_3:33660468-33660487 | Msa0115080:intron | 35.0% | |
| ATCACAAGATGCTTATAGGT+TGG | - | chr1_3:33660472-33660491 | Msa0115080:intron | 35.0% | |
| AATTGCATGTGAAGATGACT+GGG | + | chr1_3:33660692-33660711 | None:intergenic | 35.0% | |
| AAATTTCCTGACAGCACAAA+AGG | - | chr1_3:33660885-33660904 | Msa0115080:CDS | 35.0% | |
| AATTTCCTGACAGCACAAAA+GGG | - | chr1_3:33660886-33660905 | Msa0115080:CDS | 35.0% | |
| GGCGAAGGATTTATATGTTA+TGG | - | chr1_3:33660966-33660985 | Msa0115080:CDS | 35.0% | |
| GATGATTGCATCACTTCATT+AGG | - | chr1_3:33661072-33661091 | Msa0115080:intron | 35.0% | |
| ! | TTACAAGAGAGGAAGTATGT+CGG | - | chr1_3:33661113-33661132 | Msa0115080:intron | 35.0% |
| TATAGATGACATGCCTAATG+AGG | + | chr1_3:33661142-33661161 | None:intergenic | 35.0% | |
| ACAAATTATACCTCCGTTCT+CGG | + | chr1_3:33661521-33661540 | None:intergenic | 35.0% | |
| !! | ACTTGAAGTTTTCAAGCACT+GGG | - | chr1_3:33661688-33661707 | Msa0115080:intron | 35.0% |
| !!! | GCGACAAGATTTTTTTCTGA+AGG | + | chr1_3:33661716-33661735 | None:intergenic | 35.0% |
| !! | GTTCTAGAAGCATCACAAAA+TGG | + | chr1_3:33662017-33662036 | None:intergenic | 35.0% |
| !!! | TTTTGTGATGCTTCTAGAAC+AGG | - | chr1_3:33662017-33662036 | Msa0115080:intron | 35.0% |
| !! | TTTGTGATGCTTCTAGAACA+GGG | - | chr1_3:33662018-33662037 | Msa0115080:intron | 35.0% |
| CCCAAATTTCCAGACTAATA+AGG | + | chr1_3:33662049-33662068 | None:intergenic | 35.0% | |
| ! | GCTTAAATGTGTCATTGTTG+TGG | - | chr1_3:33662078-33662097 | Msa0115080:intron | 35.0% |
| ACAAGAAAAGAAATGGGGAA+GGG | + | chr1_3:33662202-33662221 | None:intergenic | 35.0% | |
| AGGGAAAAGACAAAAGGAAT+GGG | + | chr1_3:33662340-33662359 | None:intergenic | 35.0% | |
| TAGGGAAAAGACAAAAGGAA+TGG | + | chr1_3:33662341-33662360 | None:intergenic | 35.0% | |
| CAATACCTACAAAACCAACA+CGG | + | chr1_3:33662445-33662464 | None:intergenic | 35.0% | |
| !! | TTTTGTAGGTATTGTATGGC+TGG | - | chr1_3:33662451-33662470 | Msa0115080:intron | 35.0% |
| TTCTGTGCAAACAATTCATC+AGG | - | chr1_3:33662599-33662618 | Msa0115080:intron | 35.0% | |
| CTAGTCTAAGTTCATGAGTT+TGG | - | chr1_3:33662730-33662749 | Msa0115080:CDS | 35.0% | |
| CTCCAATGTTTAAGCAATAG+AGG | + | chr1_3:33662849-33662868 | None:intergenic | 35.0% | |
| TTGCTTAAACATTGGAGTAC+AGG | - | chr1_3:33662852-33662871 | Msa0115080:intron | 35.0% | |
| TGCTTAAACATTGGAGTACA+GGG | - | chr1_3:33662853-33662872 | Msa0115080:intron | 35.0% | |
| AAATGGAGAACTTCAGTAAG+CGG | + | chr1_3:33662930-33662949 | None:intergenic | 35.0% | |
| CAATATCTAAATGGCTGAAG+TGG | + | chr1_3:33663134-33663153 | None:intergenic | 35.0% | |
| TGGTGGCAACAATATCTAAA+TGG | + | chr1_3:33663143-33663162 | None:intergenic | 35.0% | |
| !! | CAATCTTTAACGGACTAATC+TGG | + | chr1_3:33663163-33663182 | None:intergenic | 35.0% |
| ! | CAATCTTTGAGGGACTAATT+TGG | - | chr1_3:33663287-33663306 | Msa0115080:intron | 35.0% |
| !! | ATCTTTTGGAGATCTAGTCA+GGG | - | chr1_3:33663348-33663367 | Msa0115080:intron | 35.0% |
| ATAGTACAAACTGACATGGA+AGG | - | chr1_3:33663408-33663427 | Msa0115080:intron | 35.0% | |
| AATTTCGTTGTTTGCAGGAT+GGG | + | chr1_3:33663711-33663730 | None:intergenic | 35.0% | |
| CTTACAATTTCGTTGTTTGC+AGG | + | chr1_3:33663716-33663735 | None:intergenic | 35.0% | |
| !! | GCAGTTTTTGATGAAAGTGT+CGG | + | chr1_3:33663774-33663793 | None:intergenic | 35.0% |
| TCATCTTCAACTTGAAGTTC+AGG | + | chr1_3:33663875-33663894 | None:intergenic | 35.0% | |
| ! | ACGGGGTTTAGTTTACATAT+TGG | - | chr1_3:33663996-33664015 | Msa0115080:CDS | 35.0% |
| ! | GAGGGAAACAGTTAACATTT+TGG | - | chr1_3:33664106-33664125 | Msa0115080:intron | 35.0% |
| ! | AGTTTGCTTTGGTTGTACTT+TGG | + | chr1_3:33664199-33664218 | None:intergenic | 35.0% |
| TGTGAATATGAAAGGTTGCA+AGG | - | chr1_3:33664218-33664237 | Msa0115080:CDS | 35.0% | |
| TAACAGATTCTCATTCCATC+TGG | + | chr1_3:33664297-33664316 | None:intergenic | 35.0% | |
| !! | TTTTGTAGTGTTTTGCTGTC+TGG | - | chr1_3:33664403-33664422 | Msa0115080:CDS | 35.0% |
| ACGTTTAGAGAAGAAAACGC+AGG | - | chr1_3:33653024-33653043 | Msa0115080:three_prime_UTR | 40.0% | |
| TAGAGAAGAAAACGCAGGTT+TGG | - | chr1_3:33653029-33653048 | Msa0115080:three_prime_UTR | 40.0% | |
| !!! | GCAATCCAAGCTCTAGTTTT+AGG | - | chr1_3:33653144-33653163 | Msa0115080:three_prime_UTR | 40.0% |
| TGAAATGAACGAAGGAAGGA+AGG | + | chr1_3:33653180-33653199 | None:intergenic | 40.0% | |
| ! | GACGTTGTTGTTGTTGATGT+TGG | - | chr1_3:33653491-33653510 | Msa0115080:three_prime_UTR | 40.0% |
| CCACAAACTTCAGTGAAGTA+AGG | + | chr1_3:33653547-33653566 | None:intergenic | 40.0% | |
| CCTTACTTCACTGAAGTTTG+TGG | - | chr1_3:33653544-33653563 | Msa0115080:exon | 40.0% | |
| CAGTGGACCAGTTTATATGA+CGG | - | chr1_3:33653570-33653589 | Msa0115080:CDS | 40.0% | |
| CGGAACTCACACTTAAAACA+TGG | + | chr1_3:33653727-33653746 | None:intergenic | 40.0% | |
| ! | TCAACACTCGCTCTTTTATC+AGG | + | chr1_3:33653761-33653780 | None:intergenic | 40.0% |
| TCTCGTTTGACACTGTATGA+TGG | - | chr1_3:33653806-33653825 | Msa0115080:CDS | 40.0% | |
| CTCGTTTGACACTGTATGAT+GGG | - | chr1_3:33653807-33653826 | Msa0115080:CDS | 40.0% | |
| GAGCTTAGGAGAACAGTTTA+TGG | - | chr1_3:33654032-33654051 | Msa0115080:intron | 40.0% | |
| TGAAATGTTTCCCGAATGTG+CGG | - | chr1_3:33654443-33654462 | Msa0115080:intron | 40.0% | |
| AATTGGCAGAAAAATGCTGG+TGG | - | chr1_3:33654601-33654620 | Msa0115080:intron | 40.0% | |
| !! | AAAGCACCATAAGCATTGAC+TGG | + | chr1_3:33654702-33654721 | None:intergenic | 40.0% |
| TTGTGGAATTACAACCAAGG+AGG | + | chr1_3:33654741-33654760 | None:intergenic | 40.0% | |
| ! | AGCTTTGTCTCCTTTGATGT+TGG | - | chr1_3:33654810-33654829 | Msa0115080:intron | 40.0% |
| CGAAAGTCTTCCAACATCAA+AGG | + | chr1_3:33654823-33654842 | None:intergenic | 40.0% | |
| GACATGTCACTGAGGAATAA+CGG | - | chr1_3:33654975-33654994 | Msa0115080:intron | 40.0% | |
| GCCATGGTCAATTAGTAGTT+TGG | - | chr1_3:33655237-33655256 | Msa0115080:intron | 40.0% | |
| !! | TGGTGTGTGTTTTAGACTGT+TGG | - | chr1_3:33655257-33655276 | Msa0115080:intron | 40.0% |
| CTACGGCAATAACTGTTTAC+AGG | + | chr1_3:33655375-33655394 | None:intergenic | 40.0% | |
| CACAGTCTGCTTCAAATCTA+CGG | + | chr1_3:33655392-33655411 | None:intergenic | 40.0% | |
| CATAATATGCACGTATCTGC+AGG | + | chr1_3:33655429-33655448 | None:intergenic | 40.0% | |
| CAGATACGTGCATATTATGC+AGG | - | chr1_3:33655430-33655449 | Msa0115080:intron | 40.0% | |
| !! | AGTCTTGTTGAAAGTCTGGA+AGG | - | chr1_3:33655649-33655668 | Msa0115080:intron | 40.0% |
| ! | GTCTTGTTGAAAGTCTGGAA+GGG | - | chr1_3:33655650-33655669 | Msa0115080:intron | 40.0% |
| TCTTGTTGAAAGTCTGGAAG+GGG | - | chr1_3:33655651-33655670 | Msa0115080:intron | 40.0% | |
| ! | TTGCAAGAGGTTGATCCATT+AGG | - | chr1_3:33655744-33655763 | Msa0115080:intron | 40.0% |
| TTGTCACCATGTGACTGAAA+AGG | + | chr1_3:33655780-33655799 | None:intergenic | 40.0% | |
| ACACTGCTTAAAGGGAACAT+TGG | + | chr1_3:33655817-33655836 | None:intergenic | 40.0% | |
| TTGCTTACAATAAAGTCCGG+AGG | - | chr1_3:33656080-33656099 | Msa0115080:intron | 40.0% | |
| TGCTTACAATAAAGTCCGGA+GGG | - | chr1_3:33656081-33656100 | Msa0115080:intron | 40.0% | |
| ATCAGTTCAGTCTGTGATGT+GGG | + | chr1_3:33656298-33656317 | None:intergenic | 40.0% | |
| TATCAGTTCAGTCTGTGATG+TGG | + | chr1_3:33656299-33656318 | None:intergenic | 40.0% | |
| GACGCAGAAATGGTTTATAC+AGG | - | chr1_3:33656605-33656624 | Msa0115080:intron | 40.0% | |
| GATTTGAGGAAGGGACATAA+AGG | + | chr1_3:33657112-33657131 | None:intergenic | 40.0% | |
| !! | TGGTTTGGTGATTTGAGGAA+GGG | + | chr1_3:33657121-33657140 | None:intergenic | 40.0% |
| !! | ATGGTTTGGTGATTTGAGGA+AGG | + | chr1_3:33657122-33657141 | None:intergenic | 40.0% |
| ACGTATCGTAGTTGCATAAG+TGG | + | chr1_3:33657517-33657536 | None:intergenic | 40.0% | |
| !!! | TGTGCCATTTTGCTCCTATT+TGG | - | chr1_3:33657785-33657804 | Msa0115080:intron | 40.0% |
| TGCACCAAATAGGAGCAAAA+TGG | + | chr1_3:33657792-33657811 | None:intergenic | 40.0% | |
| GGGTGGTAAACTAGTAGTTT+GGG | + | chr1_3:33658066-33658085 | None:intergenic | 40.0% | |
| AGGGTGGTAAACTAGTAGTT+TGG | + | chr1_3:33658067-33658086 | None:intergenic | 40.0% | |
| TAATAGAAGAGAGGAGAGGA+GGG | + | chr1_3:33658086-33658105 | None:intergenic | 40.0% | |
| ATAATAGAAGAGAGGAGAGG+AGG | + | chr1_3:33658087-33658106 | None:intergenic | 40.0% | |
| GCTAGAGTCAATGGCATATT+TGG | + | chr1_3:33658464-33658483 | None:intergenic | 40.0% | |
| ACCTAAAACGCTAGAGTCAA+TGG | + | chr1_3:33658473-33658492 | None:intergenic | 40.0% | |
| GTAGAGAGAGTTGAGAAATG+AGG | - | chr1_3:33658519-33658538 | Msa0115080:intron | 40.0% | |
| !! | AGCCCATATAATGGATAGTC+TGG | - | chr1_3:33658567-33658586 | Msa0115080:intron | 40.0% |
| ! | CTAGTGCCAAGATTTGTTTG+TGG | - | chr1_3:33658729-33658748 | Msa0115080:intron | 40.0% |
| !! | CATAAATGTGTTTCTGGAGG+AGG | - | chr1_3:33659168-33659187 | Msa0115080:intron | 40.0% |
| TCTTTCAAAGGGACAACATG+AGG | - | chr1_3:33659328-33659347 | Msa0115080:intron | 40.0% | |
| CTTTCAAAGGGACAACATGA+GGG | - | chr1_3:33659329-33659348 | Msa0115080:intron | 40.0% | |
| TTTCAAAGGGACAACATGAG+GGG | - | chr1_3:33659330-33659349 | Msa0115080:intron | 40.0% | |
| CTGGCAAGTTATTGTTTCCA+CGG | - | chr1_3:33659461-33659480 | Msa0115080:intron | 40.0% | |
| CAATCCATTATGACCAAGGT+TGG | - | chr1_3:33659754-33659773 | Msa0115080:intron | 40.0% | |
| ACATGGATCAAGATGTGACA+AGG | - | chr1_3:33659846-33659865 | Msa0115080:intron | 40.0% | |
| ! | GTAGGAACTGCGTATTTTGT+TGG | - | chr1_3:33659900-33659919 | Msa0115080:intron | 40.0% |
| GTTCCTATCTACTTCTCATC+AGG | - | chr1_3:33659952-33659971 | Msa0115080:intron | 40.0% | |
| TTTGAATTAGCTAGCATCCC+TGG | - | chr1_3:33659975-33659994 | Msa0115080:intron | 40.0% | |
| ! | CTAAAGCAAAGTTTCGGTGT+AGG | + | chr1_3:33660064-33660083 | None:intergenic | 40.0% |
| CTACACCGAAACTTTGCTTT+AGG | - | chr1_3:33660062-33660081 | Msa0115080:intron | 40.0% | |
| ACACCGAAACTTTGCTTTAG+GGG | - | chr1_3:33660064-33660083 | Msa0115080:intron | 40.0% | |
| AACCCCCTAAAGCAAAGTTT+CGG | + | chr1_3:33660070-33660089 | None:intergenic | 40.0% | |
| GTGTTCTGATGCTAAAGGAA+TGG | - | chr1_3:33660112-33660131 | Msa0115080:intron | 40.0% | |
| TAACAACACGGAATGTACCT+TGG | - | chr1_3:33660227-33660246 | Msa0115080:intron | 40.0% | |
| ATAGGCGTCACATATAACCA+AGG | + | chr1_3:33660247-33660266 | None:intergenic | 40.0% | |
| CAACTAGTGGGAAAAATGCT+TGG | + | chr1_3:33660641-33660660 | None:intergenic | 40.0% | |
| ! | CAAGCATTTTTCCCACTAGT+TGG | - | chr1_3:33660639-33660658 | Msa0115080:intron | 40.0% |
| ! | TTTTTCCCACTAGTTGGAAC+TGG | - | chr1_3:33660645-33660664 | Msa0115080:intron | 40.0% |
| GAATTGCATGTGAAGATGAC+TGG | + | chr1_3:33660693-33660712 | None:intergenic | 40.0% | |
| CAACAGCCTTTACAGTTAGT+TGG | - | chr1_3:33660811-33660830 | Msa0115080:intron | 40.0% | |
| ATTTCCTGACAGCACAAAAG+GGG | - | chr1_3:33660887-33660906 | Msa0115080:CDS | 40.0% | |
| ! | CATTCAGCTTTGACCTTCTA+GGG | + | chr1_3:33661052-33661071 | None:intergenic | 40.0% |
| ATGTATTCATGTTCCAGGTC+AGG | - | chr1_3:33661360-33661379 | Msa0115080:intron | 40.0% | |
| ! | CTTCAATTTTTCACCTGACC+TGG | + | chr1_3:33661376-33661395 | None:intergenic | 40.0% |
| CATGCTATAATAGCCGAGAA+CGG | - | chr1_3:33661505-33661524 | Msa0115080:intron | 40.0% | |
| CTGCAGTTCACAAATTTGAG+AGG | - | chr1_3:33661597-33661616 | Msa0115080:intron | 40.0% | |
| !! | CACTTGAAGTTTTCAAGCAC+TGG | - | chr1_3:33661687-33661706 | Msa0115080:intron | 40.0% |
| !! | AAAAATCTTGTCGCTTTGCC+TGG | - | chr1_3:33661722-33661741 | Msa0115080:intron | 40.0% |
| !! | AAAATCTTGTCGCTTTGCCT+GGG | - | chr1_3:33661723-33661742 | Msa0115080:intron | 40.0% |
| GAATATAAATGGGCATACCC+AGG | + | chr1_3:33661743-33661762 | None:intergenic | 40.0% | |
| AGATGAATGTCCTCCACAAT+TGG | - | chr1_3:33661834-33661853 | Msa0115080:intron | 40.0% | |
| ATGTGATACACCAATTGTGG+AGG | + | chr1_3:33661847-33661866 | None:intergenic | 40.0% | |
| !! | GATTGCTTGATGACTTGGTA+CGG | - | chr1_3:33661927-33661946 | Msa0115080:intron | 40.0% |
| !!! | ACTTTTCAAGTGCCTAGTGA+AGG | + | chr1_3:33661989-33662008 | None:intergenic | 40.0% |
| !! | TTGTGATGCTTCTAGAACAG+GGG | - | chr1_3:33662019-33662038 | Msa0115080:intron | 40.0% |
| !! | AGTCTGGAAATTTGGGGTTT+TGG | - | chr1_3:33662053-33662072 | Msa0115080:intron | 40.0% |
| !! | GTCTGGAAATTTGGGGTTTT+GGG | - | chr1_3:33662054-33662073 | Msa0115080:intron | 40.0% |
| !! | TCTGGAAATTTGGGGTTTTG+GGG | - | chr1_3:33662055-33662074 | Msa0115080:intron | 40.0% |
| GACAAGAAAAGAAATGGGGA+AGG | + | chr1_3:33662203-33662222 | None:intergenic | 40.0% | |
| AGACAAAAGGAATGGGGAAA+GGG | + | chr1_3:33662333-33662352 | None:intergenic | 40.0% | |
| AAGACAAAAGGAATGGGGAA+AGG | + | chr1_3:33662334-33662353 | None:intergenic | 40.0% | |
| GGGAAAAGACAAAAGGAATG+GGG | + | chr1_3:33662339-33662358 | None:intergenic | 40.0% | |
| TATTGTATGGCTGGAACTGT+AGG | - | chr1_3:33662460-33662479 | Msa0115080:intron | 40.0% | |
| ATTGTATGGCTGGAACTGTA+GGG | - | chr1_3:33662461-33662480 | Msa0115080:intron | 40.0% | |
| GTAGGGCATAAATTAACGTC+AGG | - | chr1_3:33662478-33662497 | Msa0115080:intron | 40.0% | |
| GGATCTGTATCAACTTTGGT+GGG | + | chr1_3:33662508-33662527 | None:intergenic | 40.0% | |
| ATCGGGATCTGTATCAACTT+TGG | + | chr1_3:33662512-33662531 | None:intergenic | 40.0% | |
| ACGCACATCTATCTGAGTAT+CGG | + | chr1_3:33662530-33662549 | None:intergenic | 40.0% | |
| !! | CTCCCACCCTTTTATTTACA+AGG | - | chr1_3:33662567-33662586 | Msa0115080:intron | 40.0% |
| TTACTTGTATATGCTGCTGC+TGG | + | chr1_3:33662635-33662654 | None:intergenic | 40.0% | |
| !! | AGTTCATGAGTTTGGTGCAA+TGG | - | chr1_3:33662738-33662757 | Msa0115080:CDS | 40.0% |
| !! | GTTCATGAGTTTGGTGCAAT+GGG | - | chr1_3:33662739-33662758 | Msa0115080:CDS | 40.0% |
| TTGGAGTACAGGGTGAAAAT+AGG | - | chr1_3:33662863-33662882 | Msa0115080:intron | 40.0% | |
| TGGCGATGTATCTTGATCTT+GGG | + | chr1_3:33663114-33663133 | None:intergenic | 40.0% | |
| !! | TCTTTAACGGACTAATCTGG+TGG | + | chr1_3:33663160-33663179 | None:intergenic | 40.0% |
| GGCGACACTTCAATCTTTAA+CGG | + | chr1_3:33663173-33663192 | None:intergenic | 40.0% | |
| ! | TGTAACAACGGCGTATTTTG+AGG | + | chr1_3:33663204-33663223 | None:intergenic | 40.0% |
| ! | ATATGGCGACACTGATCTTT+TGG | - | chr1_3:33663334-33663353 | Msa0115080:intron | 40.0% |
| !! | GATCTTTTGGAGATCTAGTC+AGG | - | chr1_3:33663347-33663366 | Msa0115080:intron | 40.0% |
| !! | TCTTTTGGAGATCTAGTCAG+GGG | - | chr1_3:33663349-33663368 | Msa0115080:intron | 40.0% |
| AAGGAAAAACAGTAGACTGG+TGG | - | chr1_3:33663471-33663490 | Msa0115080:intron | 40.0% | |
| AGGAAAAACAGTAGACTGGT+GGG | - | chr1_3:33663472-33663491 | Msa0115080:intron | 40.0% | |
| !! | CACTGACTCTAAAGGGATAA+TGG | - | chr1_3:33663577-33663596 | Msa0115080:intron | 40.0% |
| CACTAGCATAACATGCTTTG+GGG | + | chr1_3:33663621-33663640 | None:intergenic | 40.0% | |
| GCACTAGCATAACATGCTTT+GGG | + | chr1_3:33663622-33663641 | None:intergenic | 40.0% | |
| TGCACTAGCATAACATGCTT+TGG | + | chr1_3:33663623-33663642 | None:intergenic | 40.0% | |
| AAGCATGTTATGCTAGTGCA+TGG | - | chr1_3:33663623-33663642 | Msa0115080:intron | 40.0% | |
| CAATTTCGTTGTTTGCAGGA+TGG | + | chr1_3:33663712-33663731 | None:intergenic | 40.0% | |
| GTTTCAGAAATGCAGTTCAG+TGG | - | chr1_3:33663811-33663830 | Msa0115080:intron | 40.0% | |
| ATGTTGGACGAAAAGAAGCA+CGG | - | chr1_3:33663977-33663996 | Msa0115080:intron | 40.0% | |
| !! | CATTGTAGAGCTCTGAGTTA+TGG | - | chr1_3:33664253-33664272 | Msa0115080:CDS | 40.0% |
| ! | TGAATTAACAGAGCACCAGA+TGG | - | chr1_3:33664279-33664298 | Msa0115080:CDS | 40.0% |
| GTGTTTATGATGCTGGAGAA+AGG | - | chr1_3:33664469-33664488 | Msa0115080:CDS | 40.0% | |
| TTCAATAAACGTGCAGGTGC+TGG | - | chr1_3:33653238-33653257 | Msa0115080:three_prime_UTR | 45.0% | |
| TTGATGTTGGTGCAGTCACT+TGG | - | chr1_3:33653504-33653523 | Msa0115080:three_prime_UTR | 45.0% | |
| TGCAGTCACTTGGATCATGT+TGG | - | chr1_3:33653514-33653533 | Msa0115080:three_prime_UTR | 45.0% | |
| ACTGAAGTTTGTGGGTACAG+TGG | - | chr1_3:33653553-33653572 | Msa0115080:exon | 45.0% | |
| TGGACCAGTTTATATGACGG+TGG | - | chr1_3:33653573-33653592 | Msa0115080:CDS | 45.0% | |
| GGACCAGTTTATATGACGGT+GGG | - | chr1_3:33653574-33653593 | Msa0115080:CDS | 45.0% | |
| GTAGGAACCACCATTTCATG+CGG | - | chr1_3:33653698-33653717 | Msa0115080:CDS | 45.0% | |
| !! | TCAAACGAGAAGTGTCAGGA+AGG | + | chr1_3:33653796-33653815 | None:intergenic | 45.0% |
| !! | AGTGTCAAACGAGAAGTGTC+AGG | + | chr1_3:33653800-33653819 | None:intergenic | 45.0% |
| AGCTAATCCAAACACACCCT+TGG | - | chr1_3:33654130-33654149 | Msa0115080:intron | 45.0% | |
| TAATCCAAACACACCCTTGG+TGG | - | chr1_3:33654133-33654152 | Msa0115080:intron | 45.0% | |
| CAATGCATGCATTCCACCAA+GGG | + | chr1_3:33654149-33654168 | None:intergenic | 45.0% | |
| ACAATGCATGCATTCCACCA+AGG | + | chr1_3:33654150-33654169 | None:intergenic | 45.0% | |
| GCTGTTCCAGTCAATGCTTA+TGG | - | chr1_3:33654693-33654712 | Msa0115080:intron | 45.0% | |
| ! | ATGTTTAAGCACTGCCTCCT+TGG | - | chr1_3:33654724-33654743 | Msa0115080:intron | 45.0% |
| ! | GGAAGACTTTCGGAAAGTGT+TGG | - | chr1_3:33654831-33654850 | Msa0115080:intron | 45.0% |
| !! | GGAAAGTGTTGGTTGATCGT+CGG | - | chr1_3:33654842-33654861 | Msa0115080:intron | 45.0% |
| !! | GAAAGTGTTGGTTGATCGTC+GGG | - | chr1_3:33654843-33654862 | Msa0115080:intron | 45.0% |
| !! | AAAGTGTTGGTTGATCGTCG+GGG | - | chr1_3:33654844-33654863 | Msa0115080:intron | 45.0% |
| TATGCAGCTACTGTGTCACA+AGG | - | chr1_3:33655057-33655076 | Msa0115080:CDS | 45.0% | |
| !! | TGGTGATTTTGGGTGGGAAT+CGG | + | chr1_3:33655289-33655308 | None:intergenic | 45.0% |
| !! | GTCAGAGGTGTGGTGATTTT+GGG | + | chr1_3:33655299-33655318 | None:intergenic | 45.0% |
| !! | TGTCAGAGGTGTGGTGATTT+TGG | + | chr1_3:33655300-33655319 | None:intergenic | 45.0% |
| AGATGCTAATGTCAGAGGTG+TGG | + | chr1_3:33655309-33655328 | None:intergenic | 45.0% | |
| GAAGAGCTTCAATAGCTCAG+TGG | + | chr1_3:33656265-33656284 | None:intergenic | 45.0% | |
| AATGCTAAGGTTGGGCTATC+AGG | + | chr1_3:33656342-33656361 | None:intergenic | 45.0% | |
| AAAAGTGGGAGACGCAGAAA+TGG | - | chr1_3:33656595-33656614 | Msa0115080:intron | 45.0% | |
| ATGACACCAGATAGACACCT+AGG | - | chr1_3:33656638-33656657 | Msa0115080:intron | 45.0% | |
| TTCACTCCTACATGACCAAG+TGG | - | chr1_3:33657145-33657164 | Msa0115080:intron | 45.0% | |
| TCATAGCCACTTGGTCATGT+AGG | + | chr1_3:33657154-33657173 | None:intergenic | 45.0% | |
| GAAGTGATCTCATAGCCACT+TGG | + | chr1_3:33657163-33657182 | None:intergenic | 45.0% | |
| ACAAGCAGTGAGTGCAAAAC+AGG | + | chr1_3:33657432-33657451 | None:intergenic | 45.0% | |
| ATTCAAAATGCGCTCGAGAG+AGG | - | chr1_3:33657538-33657557 | Msa0115080:intron | 45.0% | |
| TTCAAAATGCGCTCGAGAGA+GGG | - | chr1_3:33657539-33657558 | Msa0115080:intron | 45.0% | |
| GTAAAGAAGGAATGGTGCTC+TGG | - | chr1_3:33657759-33657778 | Msa0115080:intron | 45.0% | |
| !!! | GCCATTGACTCTAGCGTTTT+AGG | - | chr1_3:33658469-33658488 | Msa0115080:intron | 45.0% |
| GGATAGTCTGGAAGTTTGGT+TGG | - | chr1_3:33658579-33658598 | Msa0115080:intron | 45.0% | |
| CAATAAAACAAGGGGACTGC+AGG | + | chr1_3:33658630-33658649 | None:intergenic | 45.0% | |
| AAATCTTGGCACTAGCACAC+AGG | + | chr1_3:33658724-33658743 | None:intergenic | 45.0% | |
| !! | ATGTGTTTCTGGAGGAGGAA+AGG | - | chr1_3:33659173-33659192 | Msa0115080:intron | 45.0% |
| GCTCTTCCAAGAGCAAATGT+TGG | + | chr1_3:33659207-33659226 | None:intergenic | 45.0% | |
| ATTTGCTCTTGGAAGAGCTC+AGG | - | chr1_3:33659209-33659228 | Msa0115080:intron | 45.0% | |
| !! | TGTCCCTTTGAAAGAGCGTT+AGG | + | chr1_3:33659323-33659342 | None:intergenic | 45.0% |
| TTCAAAGGGACAACATGAGG+GGG | - | chr1_3:33659331-33659350 | Msa0115080:intron | 45.0% | |
| ! | CACCGAAACTTTGCTTTAGG+GGG | - | chr1_3:33660065-33660084 | Msa0115080:intron | 45.0% |
| ATCCACCAGTTCCAACTAGT+GGG | + | chr1_3:33660653-33660672 | None:intergenic | 45.0% | |
| CACAAGAATGCTCGAACACA+AGG | + | chr1_3:33660770-33660789 | None:intergenic | 45.0% | |
| CTTGTGTTCGAGCATTCTTG+TGG | - | chr1_3:33660768-33660787 | Msa0115080:intron | 45.0% | |
| TTTCCTGACAGCACAAAAGG+GGG | - | chr1_3:33660888-33660907 | Msa0115080:CDS | 45.0% | |
| ! | ACAGCACAAAAGGGGGATTT+TGG | - | chr1_3:33660895-33660914 | Msa0115080:CDS | 45.0% |
| ! | CAGCACAAAAGGGGGATTTT+GGG | - | chr1_3:33660896-33660915 | Msa0115080:CDS | 45.0% |
| ! | AGCACAAAAGGGGGATTTTG+GGG | - | chr1_3:33660897-33660916 | Msa0115080:CDS | 45.0% |
| ATAGTAAGTGATGCAGGCGA+AGG | - | chr1_3:33660951-33660970 | Msa0115080:CDS | 45.0% | |
| ! | GGGTAACTTAGTCGACTTTG+TGG | - | chr1_3:33660988-33661007 | Msa0115080:intron | 45.0% |
| GCTGTCAATAGTACCCTAGA+AGG | - | chr1_3:33661036-33661055 | Msa0115080:intron | 45.0% | |
| ! | CCATTCAGCTTTGACCTTCT+AGG | + | chr1_3:33661053-33661072 | None:intergenic | 45.0% |
| CCTAGAAGGTCAAAGCTGAA+TGG | - | chr1_3:33661050-33661069 | Msa0115080:intron | 45.0% | |
| AGATGACATGCCTAATGAGG+TGG | + | chr1_3:33661139-33661158 | None:intergenic | 45.0% | |
| AGGTCTATGTTAGATGCTCC+TGG | - | chr1_3:33661617-33661636 | Msa0115080:intron | 45.0% | |
| AATCCACCAAGTATCATCCC+AGG | + | chr1_3:33661665-33661684 | None:intergenic | 45.0% | |
| ! | ACTTGGTACGGATAGTTTGC+TGG | - | chr1_3:33661939-33661958 | Msa0115080:intron | 45.0% |
| !!! | CGGATAGTTTGCTGGTTTTG+TGG | - | chr1_3:33661947-33661966 | Msa0115080:intron | 45.0% |
| !!! | TGCTGGTTTTGTGGCAACAT+AGG | - | chr1_3:33661956-33661975 | Msa0115080:intron | 45.0% |
| !!! | GCTGGTTTTGTGGCAACATA+GGG | - | chr1_3:33661957-33661976 | Msa0115080:intron | 45.0% |
| !!! | CTGGTTTTGTGGCAACATAG+GGG | - | chr1_3:33661958-33661977 | Msa0115080:intron | 45.0% |
| AGGGGCTTTCCTTATTAGTC+TGG | - | chr1_3:33662037-33662056 | Msa0115080:intron | 45.0% | |
| !! | CTGGAAATTTGGGGTTTTGG+GGG | - | chr1_3:33662056-33662075 | Msa0115080:intron | 45.0% |
| !!! | CAGTTCCGTGTTGGTTTTGT+AGG | - | chr1_3:33662437-33662456 | Msa0115080:intron | 45.0% |
| GGGATCTGTATCAACTTTGG+TGG | + | chr1_3:33662509-33662528 | None:intergenic | 45.0% | |
| CGCACATCTATCTGAGTATC+GGG | + | chr1_3:33662529-33662548 | None:intergenic | 45.0% | |
| GGTGGGAGATAAAATGTACC+TGG | + | chr1_3:33662555-33662574 | None:intergenic | 45.0% | |
| GGCACAAGCATTAGCTGAAA+TGG | + | chr1_3:33662909-33662928 | None:intergenic | 45.0% | |
| GTGGCGATGTATCTTGATCT+TGG | + | chr1_3:33663115-33663134 | None:intergenic | 45.0% | |
| !! | AGATTGAAGTGTCGCCGTAT+CGG | - | chr1_3:33663177-33663196 | Msa0115080:intron | 45.0% |
| !! | GCGTATTTTGAGGACCGATA+CGG | + | chr1_3:33663194-33663213 | None:intergenic | 45.0% |
| !! | AGTCCTCACACTGACTCTAA+AGG | - | chr1_3:33663569-33663588 | Msa0115080:intron | 45.0% |
| !! | GTCCTCACACTGACTCTAAA+GGG | - | chr1_3:33663570-33663589 | Msa0115080:intron | 45.0% |
| !! | ATCCCTTTAGAGTCAGTGTG+AGG | + | chr1_3:33663575-33663594 | None:intergenic | 45.0% |
| TTGTTTGCAGGATGGGAACA+CGG | + | chr1_3:33663704-33663723 | None:intergenic | 45.0% | |
| GACGCTTCTGCATTTACGTA+CGG | + | chr1_3:33663752-33663771 | None:intergenic | 45.0% | |
| GAAGATGAAAGAGCAGCAGA+TGG | - | chr1_3:33663887-33663906 | Msa0115080:intron | 45.0% | |
| ! | AAGAGCAGCAGATGGAGTTT+TGG | - | chr1_3:33663895-33663914 | Msa0115080:intron | 45.0% |
| !! | AGCAGATGGAGTTTTGGTCA+TGG | - | chr1_3:33663901-33663920 | Msa0115080:intron | 45.0% |
| ! | TGTTGGACGAAAAGAAGCAC+GGG | - | chr1_3:33663978-33663997 | Msa0115080:intron | 45.0% |
| TAACTGTTTCCCTCGAGATC+AGG | + | chr1_3:33664100-33664119 | None:intergenic | 45.0% | |
| TGCTTCAAAAGAGAGATGCG+CGG | + | chr1_3:33664156-33664175 | None:intergenic | 45.0% | |
| GGCTCTTGTGTTTATGATGC+TGG | - | chr1_3:33664462-33664481 | Msa0115080:CDS | 45.0% | |
| !! | TAACAATTTATAATAAAAAT+AGG | + | chr1_3:33656547-33656566 | None:intergenic | 5.0% |
| !!! | ATTTTTATTATAAATTGTTA+AGG | - | chr1_3:33656547-33656566 | Msa0115080:intron | 5.0% |
| !! | TATTATTTAGATATTTAATT+GGG | - | chr1_3:33664540-33664559 | Msa0115080:CDS | 5.0% |
| AATGGTTGCACAGCACTTGC+AGG | + | chr1_3:33653112-33653131 | None:intergenic | 50.0% | |
| CGACCCACCGTCATATAAAC+TGG | + | chr1_3:33653580-33653599 | None:intergenic | 50.0% | |
| AACATGGCAGCCGCATGAAA+TGG | + | chr1_3:33653711-33653730 | None:intergenic | 50.0% | |
| ! | CATTCCACCAAGGGTGTGTT+TGG | + | chr1_3:33654140-33654159 | None:intergenic | 50.0% |
| TCAATCCAGAGCCGCACATT+CGG | + | chr1_3:33654457-33654476 | None:intergenic | 50.0% | |
| !! | GAGGTGTGGTGATTTTGGGT+GGG | + | chr1_3:33655295-33655314 | None:intergenic | 50.0% |
| !! | AGAGGTGTGGTGATTTTGGG+TGG | + | chr1_3:33655296-33655315 | None:intergenic | 50.0% |
| GTTGAAAGTCTGGAAGGGGT+AGG | - | chr1_3:33655655-33655674 | Msa0115080:intron | 50.0% | |
| ACACACACACACATTCCCTC+TGG | - | chr1_3:33655933-33655952 | Msa0115080:CDS | 50.0% | |
| ACACGCAACGCTACTTCACA+TGG | + | chr1_3:33656374-33656393 | None:intergenic | 50.0% | |
| ACCAGATAGACACCTAGGAG+CGG | - | chr1_3:33656643-33656662 | Msa0115080:intron | 50.0% | |
| GATCAATTTGAGCCGCTCCT+AGG | + | chr1_3:33656658-33656677 | None:intergenic | 50.0% | |
| GTTAGGGGCAGACCAATGAT+TGG | + | chr1_3:33656883-33656902 | None:intergenic | 50.0% | |
| CTTGGGTAGTTACAGAGGGT+AGG | + | chr1_3:33658128-33658147 | None:intergenic | 50.0% | |
| ACATGAGGGGGAGGAAAAGT+AGG | - | chr1_3:33659343-33659362 | Msa0115080:intron | 50.0% | |
| ! | CTGGGAGCGCATGAATTTGA+AGG | - | chr1_3:33659930-33659949 | Msa0115080:intron | 50.0% |
| TTCCCACTAGTTGGAACTGG+TGG | - | chr1_3:33660648-33660667 | Msa0115080:intron | 50.0% | |
| GATCCACCAGTTCCAACTAG+TGG | + | chr1_3:33660654-33660673 | None:intergenic | 50.0% | |
| ! | AATCCCCCTTTTGTGCTGTC+AGG | + | chr1_3:33660894-33660913 | None:intergenic | 50.0% |
| ! | GCACAAAAGGGGGATTTTGG+GGG | - | chr1_3:33660898-33660917 | Msa0115080:CDS | 50.0% |
| AGTATGTCGGCCACCTCATT+AGG | - | chr1_3:33661126-33661145 | Msa0115080:intron | 50.0% | |
| GCTATAATAGCCGAGAACGG+AGG | - | chr1_3:33661508-33661527 | Msa0115080:intron | 50.0% | |
| TGTTCTACGTCTCACTCTCC+TGG | - | chr1_3:33661566-33661585 | Msa0115080:intron | 50.0% | |
| TACGTCTCACTCTCCTGGTT+TGG | - | chr1_3:33661571-33661590 | Msa0115080:intron | 50.0% | |
| TGAACTGCAGCATCCAAACC+AGG | + | chr1_3:33661587-33661606 | None:intergenic | 50.0% | |
| GCAAAGAGAACACAAGGACC+AGG | + | chr1_3:33661638-33661657 | None:intergenic | 50.0% | |
| GGAGTGGCAAAGAGAACACA+AGG | + | chr1_3:33661644-33661663 | None:intergenic | 50.0% | |
| TGTGTTCTCTTTGCCACTCC+TGG | - | chr1_3:33661644-33661663 | Msa0115080:intron | 50.0% | |
| GTGTTCTCTTTGCCACTCCT+GGG | - | chr1_3:33661645-33661664 | Msa0115080:intron | 50.0% | |
| ACCAAGTATCATCCCAGGAG+TGG | + | chr1_3:33661660-33661679 | None:intergenic | 50.0% | |
| ACTCCTGGGATGATACTTGG+TGG | - | chr1_3:33661659-33661678 | Msa0115080:intron | 50.0% | |
| ATAGGGGACATGCCTTCACT+AGG | - | chr1_3:33661974-33661993 | Msa0115080:intron | 50.0% | |
| TCAGATAGATGTGCGTTGCC+AGG | - | chr1_3:33662534-33662553 | Msa0115080:intron | 50.0% | |
| GCATGGTGAGAAGCCTAAGA+TGG | - | chr1_3:33663640-33663659 | Msa0115080:intron | 50.0% | |
| ! | GTTGGACGAAAAGAAGCACG+GGG | - | chr1_3:33663979-33663998 | Msa0115080:intron | 50.0% |
| TTTGTGGTGCCTGATCTCGA+GGG | - | chr1_3:33664088-33664107 | Msa0115080:intron | 50.0% | |
| !! | GCAGGTGCTGGTCAAGAAGT+TGG | - | chr1_3:33653250-33653269 | Msa0115080:three_prime_UTR | 55.0% |
| ATGGCAGCCGCATGAAATGG+TGG | + | chr1_3:33653708-33653727 | None:intergenic | 55.0% | |
| CAATCCAGAGCCGCACATTC+GGG | + | chr1_3:33654456-33654475 | None:intergenic | 55.0% | |
| CGCAACGCTACTTCACATGG+AGG | + | chr1_3:33656371-33656390 | None:intergenic | 55.0% | |
| TACGTGGAAGTTGCCCCTAC+AGG | + | chr1_3:33657924-33657943 | None:intergenic | 55.0% | |
| ACTTCCACGTAACGTCGTCC+AGG | - | chr1_3:33657933-33657952 | Msa0115080:intron | 55.0% | |
| CTTCCACGTAACGTCGTCCA+GGG | - | chr1_3:33657934-33657953 | Msa0115080:intron | 55.0% | |
| TAGAAGAGAGGAGAGGAGGG+TGG | + | chr1_3:33658083-33658102 | None:intergenic | 55.0% | |
| TCTTGGCACTAGCACACAGG+AGG | + | chr1_3:33658721-33658740 | None:intergenic | 55.0% | |
| AAAGGGACAACATGAGGGGG+AGG | - | chr1_3:33659334-33659353 | Msa0115080:intron | 55.0% | |
| TGAGGGGGAGGAAAAGTAGG+CGG | - | chr1_3:33659346-33659365 | Msa0115080:intron | 55.0% | |
| GCCACTCCTGGGATGATACT+TGG | - | chr1_3:33661656-33661675 | Msa0115080:intron | 55.0% | |
| AACAGTAGACTGGTGGGACG+TGG | - | chr1_3:33663478-33663497 | Msa0115080:intron | 55.0% | |
| CTTTGTGGTGCCTGATCTCG+AGG | - | chr1_3:33664087-33664106 | Msa0115080:intron | 55.0% | |
| GTTTCCCGAATGTGCGGCTC+TGG | - | chr1_3:33654449-33654468 | Msa0115080:intron | 60.0% | |
| GTTGGTTGATCGTCGGGGTG+AGG | - | chr1_3:33654849-33654868 | Msa0115080:intron | 60.0% | |
| GCCGCTCCTAGGTGTCTATC+TGG | + | chr1_3:33656647-33656666 | None:intergenic | 60.0% | |
| CATCCCTGGACGACGTTACG+TGG | + | chr1_3:33657940-33657959 | None:intergenic | 60.0% | |
| !! | GGTCGCAGTAGAAGCATCCC+TGG | + | chr1_3:33657954-33657973 | None:intergenic | 60.0% |
| GAGGGGGAGGAAAAGTAGGC+GGG | - | chr1_3:33659347-33659366 | Msa0115080:intron | 60.0% | |
| GTAGACTGGTGGGACGTGGA+AGG | - | chr1_3:33663482-33663501 | Msa0115080:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 33652979 | 33664588 | 33652979 | ID=Msa0115080;Name=Msa0115080 |
| chr1_3 | mRNA | 33652979 | 33664588 | 33652979 | ID=Msa0115080-mRNA-1;Parent=Msa0115080;Name=Msa0115080-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.91|0.84|1|0.83|0.92|13|582|584 |
| chr1_3 | exon | 33652979 | 33654016 | 33652979 | ID=Msa0115080-mRNA-1:exon:10559;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33655012 | 33655108 | 33655012 | ID=Msa0115080-mRNA-1:exon:10558;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33655823 | 33655964 | 33655823 | ID=Msa0115080-mRNA-1:exon:10557;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33657015 | 33657119 | 33657015 | ID=Msa0115080-mRNA-1:exon:10556;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33657594 | 33657663 | 33657594 | ID=Msa0115080-mRNA-1:exon:10555;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33658337 | 33658402 | 33658337 | ID=Msa0115080-mRNA-1:exon:10554;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33659992 | 33660055 | 33659992 | ID=Msa0115080-mRNA-1:exon:10553;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33660862 | 33660998 | 33660862 | ID=Msa0115080-mRNA-1:exon:10552;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33662111 | 33662184 | 33662111 | ID=Msa0115080-mRNA-1:exon:10551;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33662651 | 33662768 | 33662651 | ID=Msa0115080-mRNA-1:exon:10550;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33663988 | 33664048 | 33663988 | ID=Msa0115080-mRNA-1:exon:10549;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33664136 | 33664313 | 33664136 | ID=Msa0115080-mRNA-1:exon:10548;Parent=Msa0115080-mRNA-1 |
| chr1_3 | exon | 33664402 | 33664588 | 33664402 | ID=Msa0115080-mRNA-1:exon:10547;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33664402 | 33664588 | 33664402 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33664136 | 33664313 | 33664136 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33663988 | 33664048 | 33663988 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33662651 | 33662768 | 33662651 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33662111 | 33662184 | 33662111 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33660862 | 33660998 | 33660862 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33659992 | 33660055 | 33659992 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33658337 | 33658402 | 33658337 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33657594 | 33657663 | 33657594 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33657015 | 33657119 | 33657015 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33655823 | 33655964 | 33655823 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33655012 | 33655108 | 33655012 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | CDS | 33653561 | 33654016 | 33653561 | ID=Msa0115080-mRNA-1:cds;Parent=Msa0115080-mRNA-1 |
| chr1_3 | three_prime_UTR | 33652979 | 33653560 | 33652979 | ID=Msa0115080-mRNA-1:three_prime_utr;Parent=Msa0115080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
